BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase
[Candidatus Liberibacter asiaticus str. psy62]
         (296 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040387|gb|ACT57183.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 296

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 296/296 (100%), Positives = 296/296 (100%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV
Sbjct: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM
Sbjct: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL
Sbjct: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH
Sbjct: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296
           KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY
Sbjct: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296


>gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
 gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
 gi|166225757|sp|A4YBF7|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225759|sp|A1RPD2|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
 gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
 gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200]
          Length = 275

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+  LIP         +                   SMGNPH +  VE D+    +A
Sbjct: 121 VPILEPSLIPFKAK-----KPEKTYLLQTAQQTFLCGAASMGNPHCVLDVE-DVASAAVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W      ++MTG A+  ++G++ +
Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
 gi|229807504|sp|B2AGE5|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
          Length = 288

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T     AL+        DQI+++       VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI+N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VDMG 
Sbjct: 63  RIVNADGSEVEHCGNGARCFVRFVTEQGMTDKRSVRVEVMNGVITLTLQDDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P L+   +P          +      G   +        VSMGNPHA+  V+ D+ ++ +
Sbjct: 123 PELEPARVPFRAQGLPTHAEGADALYGLEVNGRTEWISAVSMGNPHAVQVVD-DVENFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  HP F   VN    +V    ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284
             +  V V   GG L I W      V MTG A   +EG +D+   
Sbjct: 242 LLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDLAAL 286


>gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
 gi|123535219|sp|Q2SQ64|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
          Length = 276

 Score =  252 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +   + +  L+       FDQ++++        D  
Sbjct: 2   LIKFTKMHGLGNDFMVVDLISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+       +K+   ET +GI+    N+DG ++VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVKENRLTNKKNIRVETKKGIIELIVNKDGLVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP      +        G +  +       VSMGNPH +  V+ D+    + 
Sbjct: 122 APRLAPADIPFVAETQEAIYPIEVNGVMYEI-----SAVSMGNPHGVLVVD-DVNKAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HP F E  N+   +V       LR +ERG G T ACG+ ACA+VVA      
Sbjct: 176 KLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAAVVAGRLRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +R V +K+ GG L I W    H V MTG A + ++G++ I
Sbjct: 236 LDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQVRI 276


>gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
 gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
          Length = 281

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 12/282 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +VID       ++ D +  ++        DQ++L+   +  S D   RI
Sbjct: 5   FSKMHGLGNDFVVIDAIRQQVELSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRYRI 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSEV+ CGNG RC  RF+  +        S   ET+ G +  +      + VDMG 
Sbjct: 65  YNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDMGV 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   +P     +       H        L +   VSMGNPHA+ +V+ ++    +A 
Sbjct: 125 PRFDPSALPFEADAEAA-----HYALDTAGQLLDIGAVSMGNPHAVLWVD-EIQEAPVAE 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN   A+  S   + LR +ERG G T ACG+ ACA+V       K 
Sbjct: 179 LGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAVAVGIRQGKL 238

Query: 243 NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKT 283
           +R V+V + GG L I W  D+  + MTG+A   +EG +D+ +
Sbjct: 239 DREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLSS 280


>gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4]
 gi|166225756|sp|A3Q9P7|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4]
          Length = 279

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 95/279 (34%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ S+  + ++     T  G +  +  RDGS++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+L+   IP                    +       VSMGNPH +  V+ D+ + D+ 
Sbjct: 121 IPVLEPSRIPFNAKK-AEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVD-DVANADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+LL KH  F +GVN+   +V     + LR +ERG   T ACGS ACA+V       K
Sbjct: 179 RIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGK 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             R V V + GG L I W      ++MTG A+  ++G++
Sbjct: 239 LARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277


>gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 276

 Score =  251 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMILKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP+         ++ +I       L      SMGNPH +  V+ ++   D+ +
Sbjct: 123 PIFEPNKIPMKAK----QAEKTYILRAGDQTLFCG-AASMGNPHCVTVVD-NVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRLQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      +FMTG A   ++G+ ++
Sbjct: 237 DENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276


>gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010]
 gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010]
          Length = 281

 Score =  251 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 142/279 (50%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +VID       +TS  I  LS        DQ++L+   Q A  D  
Sbjct: 1   MLKFSKMHGLGNDFVVIDAIEQTVELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +      T   ET  G++      DGS++VDMG
Sbjct: 61  YRIFNADGGEVAQCGNGARCFARFVRDKGLTTKDTIAVETASGLIYPTLQADGSVTVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +PI +   IP             ++  ++    +    +SMGNPHA+  V+ D+    + 
Sbjct: 121 KPIFEPAKIPFQAE-----EATTYMLTIDEHGKKEIAALSMGNPHAVMLVD-DVTVASVL 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F E VN    ++   +S+ LR +ERG G T+ACG+ ACA+VV+      
Sbjct: 175 ELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAAVVSGIKRGL 234

Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
            N  V+V + GG L I W   +  V+MTG A+  ++G++
Sbjct: 235 LNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273


>gi|288957726|ref|YP_003448067.1| diaminopimelate epimerase [Azospirillum sp. B510]
 gi|288910034|dbj|BAI71523.1| diaminopimelate epimerase [Azospirillum sp. B510]
          Length = 283

 Score =  251 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 103/284 (36%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G+GN  +VID R      ++  + A++        DQ +++        DAF+R
Sbjct: 4   EFLKMHGLGNDFVVIDARSEPYRPSAAEVRAIADRRIGVGCDQFIVLERTDAPGADAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG E  +CGN  RCV   L     R   +F+T  G+L A    +G I+VDMG P L
Sbjct: 64  IRNADGGEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHASRADNGRITVDMGPPRL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA   D +  +    G         P  V+MGNPHA+FFV+ D     L   G 
Sbjct: 124 DWAAIPLAAPADTLRVETVAHGGF-----AAPVAVNMGNPHAVFFVD-DAEAVPLDEVGP 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +   HP F E  N+  A+V S  ++ +R WERG G+T ACGS +CA++VA+     T+R 
Sbjct: 178 VFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRK 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTGKWI 287
             + + GG L IEW + + V MTG     + G+L  ++ +G+ +
Sbjct: 238 ADIILDGGTLTIEWTEEDRVLMTGPVALAFSGRLSAELVSGELV 281


>gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [marine bacterium HP15]
          Length = 304

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 10/282 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D       +  + I  L+       FDQ++++       VD  
Sbjct: 11  MLRFTKMHGLGNDFMVVDAISQPFRLRPEMIRELANRNFGIGFDQLLVVEPPGLPDVDFR 70

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF        +K    +T +G++  +  R+G + V+MG
Sbjct: 71  YRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGREGMVMVNMG 130

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IP A      DR +                +SMGNPH +  VE D+    + 
Sbjct: 131 VPEFNPPAIPFAA-----DRRKDVYTVDVDGQTVELSALSMGNPHGVLLVE-DVDQAPVE 184

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L +HP F    N+   ++     + LR +ERG G T ACGS ACA+VVA      
Sbjct: 185 TLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSGACAAVVAGCLRGL 244

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
            +  V V++ GG L+IEW      V M G A   +EG+L + 
Sbjct: 245 LDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRLP 286


>gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16]
 gi|123134519|sp|Q0KF42|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16]
          Length = 288

 Score =  250 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T     AL+        DQI+++       VD   
Sbjct: 3   LQFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI+N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VDMG 
Sbjct: 63  RIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P L+   +P          +      G   +       VVSMGNPHA+  V+ D+ ++ +
Sbjct: 123 PELEPARVPFRAEGLPTRAEGADTLYGLEVNGRTEWISVVSMGNPHAVQVVD-DVENFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  H  F   VN    +V    ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284
             +  V V   GG L I W      V MTG A   +EG +D+   
Sbjct: 242 LLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDLAAL 286


>gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
 gi|229807488|sp|B3PEI8|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
          Length = 276

 Score =  250 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/280 (35%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID       +T + I  L+        DQ++L+   +  +VD   
Sbjct: 3   IRFSKMHGLGNDFVVIDGISQTVRLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDGSEV++CGNG RC   F+  R    ++    ET  GI+  +   D  +SVDMG 
Sbjct: 63  RIFNCDGSEVENCGNGARCFAVFVRERRLTGKRVIRVETAGGIIELRVQDDEQVSVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L  + IP        D+            + +   VSMGNPHA+  V+ D+    +  
Sbjct: 123 PRLLPEKIPFVA-----DQQAVTYPLDVAGQVCSISAVSMGNPHAVMLVD-DVKSAPVGQ 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  HP F   VN    +V S + ++LR +ERG G T ACG+ ACA+VV        
Sbjct: 177 LGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L I W    H V MTG A   + G++ +
Sbjct: 237 NDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276


>gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155]
 gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185]
 gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195]
 gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223]
 gi|304412535|ref|ZP_07394141.1| diaminopimelate epimerase [Shewanella baltica OS183]
 gi|307307194|ref|ZP_07586932.1| diaminopimelate epimerase [Shewanella baltica BA175]
 gi|166225754|sp|A3D9Q0|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225755|sp|A6WTF5|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082840|sp|A9L5F5|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767120|sp|B8E690|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155]
 gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185]
 gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195]
 gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223]
 gi|304349177|gb|EFM13589.1| diaminopimelate epimerase [Shewanella baltica OS183]
 gi|306910433|gb|EFN40864.1| diaminopimelate epimerase [Shewanella baltica BA175]
 gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678]
          Length = 275

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGTEVEQCGNGARCFARFVRNKGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+   IP         +          +        SMGNPH +  VE D+    +A
Sbjct: 121 VPILEPSQIPFKAK-----KPEKTYLLQTPMQTFLCGAASMGNPHCVLDVE-DVASASVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L KH  F  GVN+   +V     + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             + V V + GG L I W      ++MTG A+  ++G++ +
Sbjct: 235 LGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002]
 gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002]
          Length = 276

 Score =  249 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    H ++T + I  L        FDQ++L+     +  D   
Sbjct: 3   LKFSKMHGLGNDFMVIDGVRQHVDLTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +    + +   ET +G++V +   DG+++VDMG 
Sbjct: 63  RIFNSDGSEVEQCGNGARCFARFVAEQGLSAKVAIRVETAKGVIVPQLLADGTVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP   +      +             +  VVSMGNPHA+  V  D+  + +A 
Sbjct: 123 PRFKPVEIPFVAA-----EEALTYPLDAAGRQCDISVVSMGNPHAVQVV-ADVDTFPVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F E VN    ++ S E + LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 LGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVAGIRRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V   GG L I W      V MTG A   + G++ +
Sbjct: 237 DHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276


>gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893]
 gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893]
          Length = 327

 Score =  249 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 135/283 (47%), Gaps = 10/283 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+D       +  + I  L+       FDQ++++       VD  
Sbjct: 17  MLNFTKMHGLGNDFMVVDAISQPFRLRPEMIRELADRNFGIGFDQLLVVEPPGLPDVDFR 76

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF        +K    +T +G++  +  R G ++VDMG
Sbjct: 77  YRIFNSDGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGRAGMVTVDMG 136

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L+   IP A      DR +                VSMGNPH +  V+ D+    + 
Sbjct: 137 VPELNPPAIPFAA-----DRRKDVYTVELGGDTVELSAVSMGNPHGVLLVD-DVDTAPVG 190

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            +G  L  HP F    N+   ++     + LR +ERG G T ACGS ACA+VVA      
Sbjct: 191 EYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSGACAAVVAGCLRGL 250

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283
            +  V V++ GG L+IEW      V M G     +EG+L +  
Sbjct: 251 LDNRVDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRLPA 293


>gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
 gi|166225758|sp|A0KS65|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
          Length = 275

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+LD   IP         +                   SMGNPH +  VE D+ + ++A
Sbjct: 121 VPVLDPSQIPFKAK-----KAEKTYLLQTPQQTFLCGAASMGNPHCVLDVE-DVANANVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W      ++MTG A+  ++G++ +
Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
 gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
          Length = 276

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGG 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP+         ++ +I       L      SMGNPH +  V+ ++   D+ +
Sbjct: 123 PIFEPSKIPMKAK----QAEKTYILRAGEQTLFCG-AASMGNPHCVTVVD-NVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVAIGRSQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG A   ++G+ 
Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274


>gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4]
 gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7]
 gi|122944336|sp|Q0HQJ2|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123130815|sp|Q0HN95|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4]
 gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7]
          Length = 275

 Score =  248 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+LD   IP         +                   SMGNPH +  VE D+ + ++A
Sbjct: 121 VPVLDPSQIPFKAK-----KAEKTYLLQTSQQTFLCGAASMGNPHCVLDVE-DVANANVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W      ++MTG A+  ++G++ +
Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
 gi|123396771|sp|Q21P78|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
          Length = 277

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 133/280 (47%), Gaps = 9/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  ++ID       IT +    L+        DQ++++        D   
Sbjct: 3   LRFTKMHGLGNDFVMIDAISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV++CGNG RC   F+  R    +   T ET  G +V     D  ++VDMG 
Sbjct: 63  RIFNHDGSEVENCGNGARCFAVFVRQRGLTAKSVITVETAVGRMVLHVQEDDQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PIL    IPLA             G  +         VSMGNPHA++ V +D     + +
Sbjct: 123 PILSPADIPLAAPQQATSYTLPTQGAGDITIG----AVSMGNPHAVYCV-NDCKTAPVET 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN    +V S   ++LR +ERG G T ACG+ ACA+VVA       
Sbjct: 178 LGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQGLL 237

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W   ++ V MTG A   + G++ I
Sbjct: 238 ENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQVKI 277


>gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
 gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
          Length = 308

 Score =  248 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +  D I  L+       FDQ++++       VD   
Sbjct: 12  LRFTKMHGLGNDFMVVDAISQPFRLAPDTIRELADRNFGIGFDQLLVVEPPGLPDVDFRY 71

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF        ++    +T +G++  K  RDG ++V+MG 
Sbjct: 72  RIFNADGSEVEQCGNGARCFARFVRDQRLTNKRVIRVQTAKGVIELKVGRDGLVAVNMGV 131

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IP A      D+ +       +        +SMGNPH +  V+ ++    + S
Sbjct: 132 PELNPPAIPFAA-----DQRKDVYTVDVNGQTVELSAISMGNPHGVLVVD-NVDTAPVES 185

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L KHP F    N+   +V       LR +ERG G T ACGS ACA+VVA       
Sbjct: 186 LGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVAGCLRGLL 245

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           +  V V++ GG L+IEW  ++  V M G A   +EG+L + 
Sbjct: 246 DSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRLP 286


>gi|24375790|ref|NP_719833.1| diaminopimelate epimerase [Shewanella oneidensis MR-1]
 gi|29839322|sp|Q8E9H5|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|24350738|gb|AAN57277.1|AE015863_6 diaminopimelate epimerase [Shewanella oneidensis MR-1]
          Length = 275

 Score =  248 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV++CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+L+   IP         +                   SMGNPH +  VE D+ + ++A
Sbjct: 121 VPVLEPSQIPFKAK-----KAEKTYLLQTPQQTFLCGAASMGNPHCVLDVE-DVANANVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL KH  F  GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K
Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ++ V V + GG L I W      ++MTG A+  ++G++ +
Sbjct: 235 LDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275


>gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
 gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
          Length = 276

 Score =  248 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM+G+GN  +V+D       +    I  L+       FDQ++++   Q    D  
Sbjct: 2   IMPFSKMQGLGNDFVVVDAISQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSE   CGNG R V +++  +    ++     T    + A    +G +++DMG
Sbjct: 62  FRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRQLRLSTNTATMQATLEDNGLVTIDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L+   IPL     +    +                VSMGNPH +  V+ ++    + 
Sbjct: 122 KPRLEPAQIPL-----RFAEKQTLYSIDAGGISYKVGAVSMGNPHCVLKVD-NVEKAPVQ 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L++H  F    N    ++   +++ LR +ERGVG T ACG+ ACA+VV +     
Sbjct: 176 TVGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVVARLQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           T+  V V + GG L I W      VFM+G AK  +EG+++I
Sbjct: 236 TDDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQVEI 276


>gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9]
 gi|254767108|sp|C1D8Q0|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9]
          Length = 278

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN   V+D       +T + I  L        FDQ++L+   QDA  D   
Sbjct: 3   LKFTKMQGLGNDFAVLDGVRQTIRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFSY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC  RF+       R+    ET RG++V +   DG ++VDMG 
Sbjct: 63  RIFNCDGGEVEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP   + D +  +    G      +    VVSMGNPHA+  V+ D+    + +
Sbjct: 123 PRFRPADIPFVAAEDAVIHELEVAG-----QILGVTVVSMGNPHAVQVVD-DVDTAPVTA 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG L+  H  F   VN    ++ S  ++ LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 FGPLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAGIRRGLL 236

Query: 243 --NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  V+V+  GG L I W  + H V+MTG A   +EG++ +
Sbjct: 237 DADTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278


>gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
 gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017]
          Length = 275

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
 gi|123169125|sp|Q146W2|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
          Length = 287

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N+T   + AL+        DQ++L+     A VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGT 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D + +P A    +  R+              R   VVSMGNPHA+  V  D+  + +
Sbjct: 123 PVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVVG-DVEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W    +   + M G A   +EG++++ 
Sbjct: 242 LLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELP 286


>gi|94499871|ref|ZP_01306407.1| diaminopimelate epimerase [Oceanobacter sp. RED65]
 gi|94428072|gb|EAT13046.1| diaminopimelate epimerase [Oceanobacter sp. RED65]
          Length = 278

 Score =  246 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 6/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H     + +  LS       FDQ++++    +  VD  
Sbjct: 2   LLKFTKMHGLGNDFMVVDLVTQHFAFRPEFVRQLSDRQFGIGFDQLLIVEPPSNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+       +     ET  GI+     +DG + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVHDVRLTAKNPIKVETSSGIIELNIEQDGDVVVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                   +P   + ++ +R +  +   +  +      VSMGNPH +  V+ D++   + 
Sbjct: 122 AARFSPSDLPF--NAEQAERYQVQVPLNDGNYTAEFGAVSMGNPHCVMVVD-DIHSELVN 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  H  F + VN    ++ +   +DLR +ERG G T ACG+ ACA+V  +     
Sbjct: 179 QLGPQLEGHEQFPKRVNAGFMQIKNRNEMDLRVYERGAGWTLACGTGACAAVAVAHKWGL 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +  V V + GG L I W     V M G   + ++G+L +
Sbjct: 239 VDDEVKVNLPGGALTIRWDGEGDVIMKGPVVRVFDGRLQV 278


>gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 274

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS   +   FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V K + D  ++V+MGE
Sbjct: 61  RIFNADGSEVGQCGNGARCFARFVRLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP            + +    H  L     VSMGNPH +  V+ D+    + +
Sbjct: 121 PIFEPSKIPFKA---VKAEKTYIMRAAEHTILCG--AVSMGNPHCVLQVD-DVETALVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 IGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W   +N +FMTG A   ++G + +
Sbjct: 235 DENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDGFIHL 274


>gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
 gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
          Length = 282

 Score =  246 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 13/288 (4%)

Query: 1   MQSSM---VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ 56
           M + M   + F KM G+GN  +V D      ++T + I  ++        DQ++++   Q
Sbjct: 1   MAARMTTRLRFTKMHGLGNDFVVFDGINQDIDLTPERIRKIADRRFGIGCDQLLVVEVPQ 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114
               D   RI N DGSEV++CGNG RC  +F+  +    + +   ET+ G+L    +R G
Sbjct: 61  HPENDFRYRIYNYDGSEVENCGNGARCFAKFVRDKKLTGKNTIRVETLGGVLTLHASRQG 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG P+L    IP       ++ D             +   +SMGNPHA+  V+ +
Sbjct: 121 DVTVDMGVPVLTPAEIPFNADSQAVNYDLALAD-----QTISISAISMGNPHAVTLVD-N 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +  +G L+  H  F   VN     V S ES+ LR +ERGVG T ACG+ ACA+VV
Sbjct: 175 VDTAPIEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACAAVV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           A       +  V+  + GG L IEW    H V MTG A   ++G++ I
Sbjct: 235 AGHLQGLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQVKI 282


>gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
 gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
          Length = 276

 Score =  246 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 132/278 (47%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFMVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +     +     T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP      +  +                 VVSMGNPH +  V+ DL    + +
Sbjct: 123 PEFEPSKIPF-----RAKQTEKTYIMRVGERTIFCGVVSMGNPHCVTVVD-DLDLTGVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E VN    +V S   + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  V V + GG L I W  +   ++MTG     ++G++
Sbjct: 237 DENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274


>gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
 gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
          Length = 276

 Score =  246 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+  +    FDQ++++    D   D   
Sbjct: 3   IQFSKMHGLGNDFMVVDCVTQNAYFSPDMIRRLADRNTGVGFDQLLVVEPPYDPESDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N D SEV  CGNG RC  RF+  +    +      T  G +V K + D  ++V+MGE
Sbjct: 63  RIFNADSSEVAQCGNGARCFARFVRMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI     IP      + + +                 VSMGNPH +  V+ ++  +D+  
Sbjct: 123 PIWAPAKIPF-----RANAEEKTYILRVEDTTLFVGAVSMGNPHCVTVVD-NVDTFDVEG 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E VN    ++ S   + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           + +V+V + GG L I W    H ++MTG A   ++G++ +
Sbjct: 237 DESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQITV 276


>gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
 gi|123626043|sp|Q476V3|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
          Length = 288

 Score =  246 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T++   AL+        DQ++++       VD   
Sbjct: 3   LQFTKMHGAGNDFVVLDGIHQKLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC VRF+T +    ++S   E + G++      DG ++VDMG 
Sbjct: 63  RIFNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P L+   +P       +    +    G   +        VSMGNPHA+  V+ D+ ++ +
Sbjct: 123 PELEPARVPFRPDGLPVRTQGEDIAYGLEINGRTAWISPVSMGNPHAVQVVD-DVENFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H  F   VN    +V    +  LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284
             +  V V   GG L I W      V MTG A   +EG +D+   
Sbjct: 242 LLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDLAAL 286


>gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863]
          Length = 275

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
 gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
          Length = 275

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTATVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275


>gi|296161402|ref|ZP_06844209.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
 gi|295888388|gb|EFG68199.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
          Length = 295

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N+T   + AL+        DQ++L+     A VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTVTLTMQENGEVLVDMGT 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D + +P A    +  R+              R    VSMGNPHA+  V+ D+  + +
Sbjct: 123 PVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVVD-DVEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
           + +  V V   GG L I W    +   + M G A   +EG++++ 
Sbjct: 242 RLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIELP 286


>gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T]
 gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T]
          Length = 277

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 130/281 (46%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      ++T   + A++        DQ++++       VD   
Sbjct: 3   LRFTKMHGLGNDFVVIDATRAPVDLTPARVKAIADRHFGVGCDQLLVVEPAARPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +          ET  GI+  +   DG ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDKGLTDKAEIRVETRSGIIAPRLRADGLVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    +P     D + +     G    +       VSMGNPHA+  V  D+    +  
Sbjct: 123 PELAPAKVPFVSDSDAVVQPLQVGGDTVAI-----TAVSMGNPHAVQVV-ADVDAAPVVE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  + +H  F   VN    +V     + LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 QGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAGILRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
              V V   GG L I W      V MTG A   +EG++++ 
Sbjct: 237 ETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMELA 277


>gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72]
 gi|166224239|sp|A1K306|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72]
          Length = 277

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      ++T   + A++        DQ++++       VD   
Sbjct: 3   IRFTKMHGLGNDFVVIDATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET  G++      DG +SVDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDKGLTDKREIRVETRAGVIAPALRPDGLVSVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IP     D   +          +       VSMGNPHA+  V  D+    +A 
Sbjct: 123 PELSPARIPFVSDSDAWVQPLQLAEDTVAI-----TAVSMGNPHAVQVV-ADVDTAPVAR 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F   VN    +V     + LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 QGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVAGIGRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
              V V+  GG L I W      V MTG A   +EG+L++ 
Sbjct: 237 VSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELELP 277


>gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206]
 gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3]
 gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206]
          Length = 275

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P   +        + +       L    VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89]
 gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1]
 gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638]
 gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11]
 gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
 gi|254039021|ref|ZP_04873072.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
 gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185]
 gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
 gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
 gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
 gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
 gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
 gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
 gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
 gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
 gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
 gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
 gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
 gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
 gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
 gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
 gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
 gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
 gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
 gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605]
 gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718]
 gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143]
 gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271]
 gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280]
 gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591]
 gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299]
 gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9]
 gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933]
 gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
 gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046]
 gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197]
 gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227]
 gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89]
 gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1]
 gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638]
 gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli]
 gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11]
 gi|226838712|gb|EEH70740.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
 gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
 gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15]
 gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185]
 gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
 gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
 gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
 gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
 gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
 gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
 gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
 gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
 gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
 gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
 gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
 gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
 gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
 gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
 gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
 gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
 gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
 gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1]
 gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3]
 gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101]
 gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520]
 gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482]
 gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120]
 gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263]
 gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489]
 gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007]
 gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509]
 gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2]
 gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1]
 gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3]
 gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253]
 gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167]
 gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227]
 gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605]
 gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718]
 gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143]
 gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271]
 gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280]
 gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591]
 gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299]
 gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9]
          Length = 275

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 275

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972]
 gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
 gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
 gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073]
 gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972]
 gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
 gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
 gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1]
          Length = 275

 Score =  245 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P   +        + +       L    VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
 gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
          Length = 278

 Score =  245 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           S ++ F KM G+GN  +V+D    +   + D I  L+       FDQ++L+    D  +D
Sbjct: 2   SILIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG ++V+
Sbjct: 62  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L+   IP         +       +          VSMGNPH +  VE D+   D
Sbjct: 122 MGIPALEPGKIPFTAK-----KVEKTYLLMASSGTYLCGAVSMGNPHCVIEVE-DVAATD 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  L  H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 176 VDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVVVGILQ 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            K +R V V + GG L+I W      ++MTG A+  ++G++
Sbjct: 236 GKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276


>gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
 gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
          Length = 279

 Score =  245 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 138/285 (48%), Gaps = 10/285 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M+   + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 1   MKGQEMQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPD 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI N DGSEV  CGNG RC  RF+T +    +K  T  T  G ++     +  + 
Sbjct: 61  QDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTDKKEITVSTQIGKMILNVLENEKVQ 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPI +   IP        ++   +      +      VVSMGNPH +  V+ D+  
Sbjct: 121 VNMGEPIWEPAKIPFVA-----NKFEKNYILRTDIQTVLCGVVSMGNPHCVVQVD-DIKT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            ++   G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V    
Sbjct: 175 ANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVGI 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                +  V V + GG L IEW      +FMTGEA   ++G + +
Sbjct: 235 MQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDGVIRL 279


>gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
 gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
          Length = 277

 Score =  245 bits (624), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+      +  + I  L+       FDQ++++   +D  +D  
Sbjct: 2   LLQFTKMHGLGNDFMVVDLVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV++CGNG RC  RF        ++    ET  G L      DG +SVDMG
Sbjct: 62  YRIYNADGSEVENCGNGARCFARFVLDQRLTHKREIHVETAGGPLTLVVGDDGRVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P    + +P     D+      H   V+   +      S+GNPHA+  V+ D+    +A
Sbjct: 122 KPRFAPQDLPFEADGDR----PLHDLEVDGQQISIGVA-SLGNPHAVLRVD-DVTTAPVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN    +V S   + LR +ERGVG T ACG+ ACA+V        
Sbjct: 176 TLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAAVACGIRQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V+V + GG L I+W D   ++ MTG A++ +EG++ I
Sbjct: 236 LESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAI 276


>gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
 gi|166225747|sp|Q1LS37|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
          Length = 288

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 134/285 (47%), Gaps = 7/285 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T     AL+        DQI+++       VD   
Sbjct: 3   LQFTKMHGAGNDFIVLDGIHQKLDLTDAQWRALANRHFGIGADQILIVEKSSRDDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDMGE 122
           RI+N DG EV+ CGNG RC VRF+T R          E + G++  K   DG ++VDMGE
Sbjct: 63  RIVNADGGEVEHCGNGARCFVRFVTDRGMTDKQSVRVEVMNGVITLKLQDDGQVTVDMGE 122

Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P L    +P        + +      G   +        VSMGNPHA+  V+ D+  + +
Sbjct: 123 PELTPARVPFIADGLPTRAEAQDTLYGLEVNGRTEWISPVSMGNPHAVQIVD-DVEQFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  H  F   VN    ++    ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
             +  V V   GG L I W      V MTG A   +EG +D+ T 
Sbjct: 242 LLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLSTL 286


>gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9]
 gi|81614797|sp|Q6LLN5|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum
           SS9]
          Length = 276

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   +  AI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFMVVDCVTQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +     +     T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP          ++ +I  V    +     VSMGNPH +  V+ DL   D+ +
Sbjct: 123 PEFEPSKIPF----RAKQTEKTYIMRVGERTIFCGT-VSMGNPHCVTVVD-DLELTDVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E VN    +V S   + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  V V + GG L I W      ++MTG     ++G++
Sbjct: 237 DENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274


>gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea sp. MED297]
 gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297]
          Length = 274

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 130/277 (46%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID       ++++ I           FDQ++L+        D   
Sbjct: 3   LKFTKMHGLGNDFMVIDGVTQAVELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV++CGNG RC  RF      ++  +   ET  G L  +   +G ++VDMG 
Sbjct: 63  RIFNADGSEVENCGNGARCFARFVLDNQLIQNTTIRVETAGGDLELRVEDNGEVTVDMGR 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP        D               +   +++GNPH +  V+ D+   D+  
Sbjct: 123 PRTRPDKIPFLA-----DDKAALYDINVLDETLSISAINVGNPHCVTRVD-DVLTADVER 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F + VN    ++    ++ LR +ERGVG T ACG+ ACA+VVA       
Sbjct: 177 LGPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAVVAGVLNGWL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  VSV + GG L I W    ++ MTG A + +EG +
Sbjct: 237 DHTVSVTLPGGKLTIHWAGEGNILMTGPATRVYEGVI 273


>gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602]
 gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602]
          Length = 274

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + +P          ++ +I       +    VVSMGNPH +  V+ D+   ++  
Sbjct: 121 PVFEPQQVPF----RAAKPEKTYILRAEERTVFCG-VVSMGNPHCVLQVD-DVLTAEVEV 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   ++ S ES+ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
 gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
          Length = 276

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +VID       +T+  +  ++        DQ++L+      ++D   
Sbjct: 3   IAFTKMQGLGNDFVVIDAFSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  R      T   +T  GI+  +   DG I+VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARFVRERKLTDKNTLRVQTAGGIIQLQLEPDGQITVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + IP     +         G    +      VVS+GNPH +  V   +    +A 
Sbjct: 123 PRFAPQQIPFKVDHEADYYSLELDGQQLEIG-----VVSLGNPHCVLRVPA-VDAAPVAH 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G LL  HP F + VN+  A++ S   L LR +ERG G T ACG+ ACA+VV        
Sbjct: 177 WGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIGKRRGWL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W  +   V+M+G A+  +EG  D+
Sbjct: 237 SGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276


>gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
 gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
          Length = 278

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 8/279 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +V D      ++ +     L+        DQI+L+   +    D   
Sbjct: 3   LRFTKMQGLGNDFVVFDGVRQRVDLDAGFARLLADRRFGIGCDQILLVEPPRLPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +    +      T  G +      DG + VDMG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVRDQGLTDKDEIPVGTAAGAIRLYLEPDGQVRVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP +   +  D           L +     +SMGNPHA+  V+ D+    +A+
Sbjct: 123 PAFTPARIPFSVETETADATYPLEIEDRTLTIG---ALSMGNPHAVLIVD-DVESAPVAT 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  HP F   VN    ++    ++ LR  ERG G T ACG+ ACA+VV+     + 
Sbjct: 179 LGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVVSGRRRGRL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
           +  V V + GG L+IEW    H V+MTG A   +EG+++
Sbjct: 239 DERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEIE 277


>gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
 gi|254767118|sp|B6IP82|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
          Length = 291

 Score =  244 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/277 (39%), Positives = 156/277 (56%), Gaps = 9/277 (3%)

Query: 5   MVD-FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           MV  F KM G+GN  +V+D R     +T+ A  A++        DQI+L+   +  + D 
Sbjct: 1   MVRRFLKMHGLGNDFVVLDARRDPLPLTTAAARAIADRHTGVGCDQIVLLEPPRHPAADL 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+RI+N DGSE  +CGN  RCV   +     R   T ET  G+L  +   DGS++VDMG 
Sbjct: 61  FMRILNPDGSESGACGNATRCVASLVADGSGRAEVTVETATGLLRCRLRADGSVTVDMGP 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             LDW  IPLA + D +        P     L++   V MGNPHA+FFV+ D    DLA+
Sbjct: 121 ARLDWTQIPLAAAHDTLRV------PAGAGPLQDACCVGMGNPHAVFFVD-DAEAVDLAT 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H +F +  N+ +A+V + + + +R WERG G+T ACGS +CA++VA+     T
Sbjct: 174 LGPVLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLT 233

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            RA  +++ GG L IEWH + HV MTG     + G+L
Sbjct: 234 GRAAWIELDGGRLWIEWHGDGHVLMTGPVATAFTGEL 270


>gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
 gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
          Length = 276

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+  +    +   +  T  G L     +DG ++V+MG
Sbjct: 62  YRIFNADGHEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IPL  +                        VSMGNPH +  V+ D+    ++
Sbjct: 122 HPNFEPSKIPLKATKR-----ELTYIIRAEEHTVFSGAVSMGNPHCVMEVD-DIETAQVS 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     +K
Sbjct: 176 TLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAAMVIGFIQNK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 236 LTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
 gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
          Length = 275

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275


>gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
 gi|122419111|sp|Q1QSV1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
          Length = 277

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 136/282 (48%), Gaps = 10/282 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+      + ++ I  L+       FDQ++L+   +D  +D  
Sbjct: 2   LLHFTKMHGLGNDFVVIDLITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV++CGNG RC  RF+       ++    ET  G L  +   D  I VDMG
Sbjct: 62  YRIFNADGNEVENCGNGARCFARFVRDNRLTHKREIRVETQAGPLTLRVEDDERIRVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    +++P     D                  +   VSMGNPHA+  V+ D+    +A
Sbjct: 122 VPRFAPEVVPFDAPADAPA-----HCLEVDGETWDIGAVSMGNPHAVLRVD-DVAQAPVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+ +HP F  GVN+   +V S     LR +ERG G T ACG+ ACA+V        
Sbjct: 176 RLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAAVAHGIRRGW 235

Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
               V V + GG L + W   +  + MTG A   +EG++ + 
Sbjct: 236 LESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIALP 277


>gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
 gi|229807509|sp|B2T1P5|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
          Length = 299

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N+T   + AL+        DQ++L+     A VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+       ++S   +  +G +      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGT 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D + +P A    +   +          +   R   VVSMGNPHA+  V+ D+  + +
Sbjct: 123 PVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W     +  + M G A   +EG++++ 
Sbjct: 242 LLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIELP 286


>gi|307823077|ref|ZP_07653307.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96]
 gi|307735852|gb|EFO06699.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96]
          Length = 275

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +VID    H ++T + I  +S       FDQ++LI    +A+ D  
Sbjct: 1   MINFTKMHGLGNDFVVIDAINQHIDLTPEQIRLMSDRHFGIGFDQLLLIEKAVNANADFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +    +     +T  G L+ + + D  I+V+MG
Sbjct: 61  YRIFNADGGEVAQCGNGARCFARFVRDKKLSDKNEICVDTNSGQLLLRFDADNLITVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IPL    +             +   +    VSMGNPHA+  V  D+    +A
Sbjct: 121 IPRHAPAEIPLLAEEESRFYTVLV-----NETEKAFGAVSMGNPHAVIQV-TDVKTAPVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  H  F E VN+   +V   + + LR +ERG   T ACGS ACA+VV     + 
Sbjct: 175 ELGKALESHTFFPERVNVGFMQVVDRQHIKLRVYERGAAETLACGSGACAAVVIGIEHNL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VSV + GG L I W      V MTG A   +EG++ +
Sbjct: 235 LDHTVSVDLPGGTLSINWLGRGEPVLMTGPAISVFEGQITL 275


>gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
 gi|161485855|ref|NP_709616.2| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
 gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
 gi|122366275|sp|Q0SZ00|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
 gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
 gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
 gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74]
 gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70]
 gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671]
 gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71]
 gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71]
 gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6]
 gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218]
 gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227]
 gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304]
          Length = 274

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
 gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
          Length = 287

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N++   + AL+        DQ++L+       VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLSPAQVRALADRHFGVGADQLLLVEKPTVEGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+       ++S   +  +G +      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ + + +P A    +  R+          +   R   VVSMGNPHA+  V+ D+  + +
Sbjct: 123 PVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W    ++  + M G A   ++G++++ 
Sbjct: 242 LLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIELA 286


>gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905]
          Length = 274

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767121|sp|B8GT89|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 278

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/282 (34%), Positives = 139/282 (49%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH-DFQDASVDAF 63
           + F+KM G+GN  +VID      +++ D +  L+        DQ++L+      A+ D  
Sbjct: 3   IQFSKMHGLGNDFVVIDAIHQPVDLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC   F+  R    +     ET  GI+  +   DG ++VDMG
Sbjct: 63  YRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDHIPVETAAGIIHLQVQPDGQVTVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP               G    +       VSMGNPHA+  V+ ++    +A
Sbjct: 123 PPRLKPWQIPFEAESAMTSYPLEVEGETYEIG-----AVSMGNPHAVLRVD-NVQTAPVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  HP F   VN+   +V S   + LR +ERGVG T ACG+ ACA+VV+      
Sbjct: 177 RLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVSGRIQGL 236

Query: 242 TNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
            +  V+V + GG L+I W   +   V MTG A + + G +DI
Sbjct: 237 LDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSIDI 278


>gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 276

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+  +    +   +  T  G L     +DG ++V+MG
Sbjct: 62  YRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IPL  S                        VSMGNPH +  V+ D+    + 
Sbjct: 122 HPNFEPSKIPLKASKR-----ELTYIIRTQEHTVFSGAVSMGNPHCVLEVD-DVTTAQVD 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     +K
Sbjct: 176 ILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHMQNK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 236 LSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82]
          Length = 274

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC   F+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFACFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895]
 gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895]
          Length = 275

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ ++    + 
Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NIDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275


>gi|257453687|ref|ZP_05618974.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60]
 gi|257448921|gb|EEV23877.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60]
          Length = 310

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 11/299 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+     ++T + +  L        FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLHLTKELVALLGDRHLGIGFDQLLIVEPPSRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEVQ CGNG RC  RF+ +R    ++    ET  GI+    +  G + VDMG
Sbjct: 62  YRIFNKDGSEVQQCGNGARCFARFVQARKLSFKQRIRVETASGIITLSTDDYGWVKVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP         ++ + +           +V +MGNPHA+  V+ D+   ++ 
Sbjct: 122 KPKFEPDEIPFTPKTITKVQNSYRLNVDGTPVTL--YVANMGNPHAVIKVD-DVLTAEVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V        
Sbjct: 179 KLGKAIESHPAFPERVNVGFMQVMNNRHIRLRVYERGVGETQACGTGACAAVATGVREGW 238

Query: 242 TNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD---IKTGKWIKKNEDDEA 295
            +  V ++  + GG L I W +   V+MTG A   +EG      +  G  +K      +
Sbjct: 239 LDEGVDIRAQLYGGSLAIRWQEGYPVYMTGPATFVYEGVFSPEGLMAGAGLKFAPAQSS 297


>gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
 gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
          Length = 300

 Score =  243 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 3   SSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           S M + F KM G GN  +V+D      N+T + + AL+        DQ++L+       V
Sbjct: 12  SVMKLKFTKMHGAGNDFVVLDGYTQALNLTPEQVRALADRHFGVGADQLLLVEKPTVDGV 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118
           D   RI NCDG EV+ CGNG RC V+F+       ++S   +   G +      +G + V
Sbjct: 72  DFRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQNGTITLTMQENGEVLV 131

Query: 119 DMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P+ + + +P A    +  R+          +   R   VVSMGNPHA+  V+ D+ 
Sbjct: 132 DMGSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVE 190

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            + +   G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A 
Sbjct: 191 AFPVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAG 250

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
                 +  V V   GG L I W    ++  + M G A   ++G++++ 
Sbjct: 251 IRRGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIELA 299


>gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312761|sp|Q0ACL9|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 279

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 12/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F KM+G+GN  +VID        + + I  ++        DQ++L    + +  D   
Sbjct: 3   VRFTKMQGLGNDFVVIDAVRQPVEPSPEQIRHIADRRYGVGCDQVLLATPARRSQADFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
            I N DGS+ + CGNG+RC+ RFL  R      R     ETI G+   +   DG ++VDM
Sbjct: 63  LIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTVDM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+L+   IP        + +    G V  L       VSMGNPHA+  V+ D+    +
Sbjct: 123 GAPVLEPPHIPFRAPSRAREYELEVEGQVVRLG-----AVSMGNPHAVLRVD-DVDSAPV 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  H  F   VN+   +V +   + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 177 ETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRLRG 236

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
               AV V + GG L+I W  +  HV+MTG A+  +EG++ + 
Sbjct: 237 WLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279


>gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
 gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
          Length = 276

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+  +    +   +  T  G L     +DG ++V+MG
Sbjct: 62  YRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IPL  S                        VSMGNPH +  V+ D+    + 
Sbjct: 122 HPNFEPSKIPLKASKR-----ELTYIIRAEEHTVFSGAVSMGNPHCVIEVD-DITTAQVD 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V      K
Sbjct: 176 VLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQSK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            + AV V + GG L I W    H V MTG A+  ++G++ +
Sbjct: 236 LSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276


>gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v]
          Length = 274

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101]
 gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101]
          Length = 274

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|163859105|ref|YP_001633403.1| diaminopimelate epimerase [Bordetella petrii DSM 12804]
 gi|163262833|emb|CAP45136.1| dapF [Bordetella petrii]
          Length = 304

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 140/294 (47%), Gaps = 14/294 (4%)

Query: 5   MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           M+ +F KM G GN  +V+D      +IT +   AL+        DQI+L+        D 
Sbjct: 7   MIWNFTKMHGAGNDFVVLDGVRQAIDITPERARALADRHFGIGADQILLVEPPTHPEADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    R     E   GILV  E  D  ++VDM
Sbjct: 67  RYRIFNADGSEVEHCGNGARCFVRFVHEQRLSSRNPLRAEIATGILVLDEGDDEQVTVDM 126

Query: 121 GEPILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           G    D   +P         A+  D + +      P           V++ NPHA+  V+
Sbjct: 127 GVTRFDPAALPFDTAGLASAAQGSDTLWQLDLPDAPPGLPRSVQVSAVAISNPHAVQQVD 186

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+    +A+ G L+ +HP F+  VN    +V    S+ LR +ERG G T ACG+ ACA+
Sbjct: 187 -DVDAAPVAAIGPLIERHPRFARRVNAGFMQVLDRHSIRLRVYERGAGETLACGTGACAA 245

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           V A       +  V V   GG L ++W+   H+ MTG A   + G++DI    +
Sbjct: 246 VAAGIRRGLLDSPVRVHTRGGTLTVDWN-GEHLRMTGPATSVFTGQVDIDKLVF 298


>gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
 gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
          Length = 274

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    +D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFPADTIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G +V     D ++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMVLTVKEDDNVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+ D++  ++A 
Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTEIQTVLCGAVSMGNPHCVVQVD-DIHTANVAQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V + + + LR  ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG LLIEW    H ++MTG A   ++G + +
Sbjct: 235 DNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDGVIYL 274


>gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
 gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
          Length = 276

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D       ++ + I  ++        DQ++L+   Q    D   
Sbjct: 3   LKFTKMHGAGNDFVVLDGVRQSVALSPEQIRYIADRHFGIGCDQVLLVEKTQRDEADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET  G++  +   DG I+V+MG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDQNLTSKREIVVETKSGLISPRLEEDGRITVNMGL 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP        D                  VVSMGNPHA+  V+ D+    +A+
Sbjct: 123 PIFDPAQIPFV-----SDSTEVIQPLQVGNESVQITVVSMGNPHAVQVVD-DVETAPVAT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN+   +V   E + LR +ERG G T +CG+ ACA+VVA       
Sbjct: 177 QGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAAVVAGIRRKLL 236

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V   GG L I W  + + V MTG A   +EG++++
Sbjct: 237 DNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276


>gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
 gi|229813249|sp|B2TUW5|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
          Length = 274

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ+++I    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVS+GNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSIGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 278

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 135/285 (47%), Gaps = 11/285 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M+  M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  
Sbjct: 1   MEQ-MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPD 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + 
Sbjct: 60  LDFHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP  D   +P      + ++                 VVSMGNPH +  V+ D+  
Sbjct: 120 VNMGEPNFDPSAVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVQT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V    
Sbjct: 174 AAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                   V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 234 SQGLLAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDGFIHL 278


>gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J]
 gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
 gi|229813252|sp|B2UD25|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J]
 gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
          Length = 292

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 134/286 (46%), Gaps = 7/286 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      + T +   A++        DQ++L+       VD   
Sbjct: 3   LHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG 
Sbjct: 63  RIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P        +   D        +        VSMGNPHA+  V+ D   + +
Sbjct: 123 PVFEAARLPFLPEGLPTRTQGDDTQHALQINGRTEWLSTVSMGNPHAVQIVD-DTEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H +F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285
             +  V V   GG L I W  +   V MTG A   +EG LD+   K
Sbjct: 242 LLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDLDALK 287


>gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
 gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
          Length = 287

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N+T   + AL+        DQ++L+       VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVDGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+       ++S   +  +G +      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGL 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ + + +P A    +  R+          +   R   VVSMGNPHA+  V+ D+  + +
Sbjct: 123 PVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDN---NHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W  N     + M G A   ++G++++ 
Sbjct: 242 LLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIELA 286


>gi|227357158|ref|ZP_03841527.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906]
 gi|227162690|gb|EEI47657.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +      +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +     + I  +    L    VVSMGNPH +  VE D+   ++ S
Sbjct: 121 PEFEPQKVPFRA---QKVEKTYIIRAMERTVLCG--VVSMGNPHCVIQVE-DIKTAEVES 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G++L +H  F E  N+   +V    +L LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +R V V + GG L IEW    + ++MTG A   ++G + +
Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274


>gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 276

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 141/278 (50%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + D +  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFMVVDAVTQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDDQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP   +      ++ +I       +      SMGNPH +  V+ D+   D+ +
Sbjct: 123 PIFDPAKIPFRAN----QAEKTYILRAGDQTVFCG-AASMGNPHCVTVVD-DVLTADVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN+   +V S   + LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACAAVAIGRQQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  V+V + GG L I W+ N  ++FMTG     ++G++
Sbjct: 237 DEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQV 274


>gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 275

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ ++    + 
Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275


>gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
 gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
          Length = 274

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTATVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274


>gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
 gi|259595064|sp|C4LDU8|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
          Length = 276

 Score =  242 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN  +V+D         ++ +  L        FDQ++L+    D  +D  
Sbjct: 2   LIQFSKMHGLGNDFVVVDGVTQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121
            RI N DGSEVQ CGNG RC  RF+  +           T+ G +V +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVQQCGNGARCFARFVRLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IP       +  ++ ++  V    +    VVSMGNPH +  V   +    + 
Sbjct: 122 VPEFEPAKIPF----RALKAEKLYLLRVAEQTVMCG-VVSMGNPHCVIEV-PSVKDAPVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L     F E +N+    V S   ++LR +ERG G T ACG+ ACA+VV      K
Sbjct: 176 TLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAAVVVGIQQEK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L I W+     V+MTG A+  ++G++++
Sbjct: 236 LKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276


>gi|89110210|ref|AP_003990.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536]
 gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A]
 gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS]
 gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 EDL933]
 gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197]
 gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227]
 gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046]
 gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
 gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
 gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
 gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
 gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739]
 gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
 gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
 gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
 gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
 gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
 gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
 gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A]
 gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11]
 gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22]
 gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019]
 gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171]
 gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1]
 gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024]
 gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
 gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
 gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
 gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
 gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
 gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
 gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1]
 gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88]
 gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989]
 gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39]
 gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026]
 gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952]
 gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
 gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
 gi|256021447|ref|ZP_05435312.1| diaminopimelate epimerase [Shigella sp. D9]
 gi|256026156|ref|ZP_05440021.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B]
 gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
           12009]
 gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
           11368]
 gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
           11128]
 gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
 gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412]
 gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354]
 gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088]
 gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
 gi|307140508|ref|ZP_07499864.1| diaminopimelate epimerase [Escherichia coli H736]
 gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W]
 gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
 gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70]
 gi|62288069|sp|P0A6K1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|62288070|sp|P0A6K2|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123147484|sp|Q0TAR6|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012034|sp|A7ZU14|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012035|sp|A8A6R7|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082833|sp|B1IW95|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724208|sp|B7MH73|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724209|sp|B7NTD3|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724210|sp|B7M611|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724211|sp|B7NFB1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724212|sp|B1LLY0|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724213|sp|B7LU47|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807507|sp|B5YY56|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807508|sp|B1XAH6|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767104|sp|B7L969|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259595053|sp|C4ZZ73|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110]
 gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536]
 gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS]
 gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A]
 gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739]
 gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
 gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
 gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
 gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
 gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
 gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
 gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
 gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
 gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
 gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A]
 gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11]
 gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22]
 gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019]
 gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171]
 gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1]
 gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
 gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
 gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
 gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
 gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
 gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989]
 gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
 gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1]
 gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88]
 gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39]
 gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026]
 gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82]
 gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952]
 gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
 gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
 gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
 gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
 gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
           11368]
 gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
           12009]
 gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
           11128]
 gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1]
 gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042]
 gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
 gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088]
 gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412]
 gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354]
 gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034]
 gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
 gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W]
 gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146]
 gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
 gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407]
 gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70]
 gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W]
 gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1]
 gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431]
 gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112]
 gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83]
 gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212]
 gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327]
 gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B]
 gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89]
 gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687]
 gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61]
 gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14]
 gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010]
 gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68]
 gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli 1180]
 gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1]
 gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11]
 gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252]
 gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125]
 gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044]
 gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86]
 gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74]
 gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88]
          Length = 274

 Score =  242 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
 gi|123587542|sp|Q3IEW3|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
          Length = 276

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  ++ D I  L+       FDQ++++       +D  
Sbjct: 2   LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+  +    +   T  T  G L     +DG ++V+MG
Sbjct: 62  YRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IPL  +                        VSMGNPH +  V+ D+    + 
Sbjct: 122 HPNFEPSKIPLKATKR-----ELTYIIRTEEHTVFSGAVSMGNPHCVLEVD-DITTAQVD 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F +  N+   +V S E + LR WERGV  T ACG+ ACA++V     +K
Sbjct: 176 ILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQNK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L I W+   H V MTG A+  ++G++ +
Sbjct: 236 LISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276


>gi|295675164|ref|YP_003603688.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002]
 gi|295435007|gb|ADG14177.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002]
          Length = 370

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 142/299 (47%), Gaps = 10/299 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T+  + AL+        DQ++L+       VD   
Sbjct: 62  LKFTKMHGAGNDFVVLDGYTQPLDLTTAQVRALANRHFGVGADQLLLVEKPTVEGVDFRY 121

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDMG 
Sbjct: 122 RIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQDNGEVIVDMGT 181

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D +L+P A    +  R+          +   R   VVSMGNPHA+  V+ D   + +
Sbjct: 182 PVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVVD-DAEAFPV 240

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  + +H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+V A     
Sbjct: 241 LVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAVGAGIRRG 300

Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296
             +  V V   GG L I W        + M G A   +EG++++   +    + D   +
Sbjct: 301 LLDSPVLVHTHGGDLTITWDIAQPGAPLLMAGPAATVFEGEIEL-AEEASGASPDSSQH 358


>gi|237747500|ref|ZP_04577980.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS]
 gi|229378851|gb|EEO28942.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS]
          Length = 287

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 136/286 (47%), Gaps = 11/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V D      ++T++    ++        DQI+++   Q+ + D   
Sbjct: 3   LKFTKMHGAGNDFIVFDACTQKVDLTAEQFRFIADRRFGIGADQILIVEKPQNPATDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R   RF+   +   R     ET  GI+  +  ++G+++V+MG+
Sbjct: 63  RIFNADGGEVEQCGNGARAFARFVTVFNMTDRNPVRVETKAGIIELRVEKNGNVTVNMGK 122

Query: 123 PILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P      IP        +           +     L      +VSMGNPHA+  VE ++ 
Sbjct: 123 PEFSPDRIPFDASGLKGKPAGDDMIWPLALELPKGLQTIEVSLVSMGNPHAVQIVE-NVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G L+  H  F    N     + +  S+ LR +ERG G T ACG+ ACA+VVA 
Sbjct: 182 KAPVGETGPLIENHARFPNRTNAGFMEIENRHSIKLRVFERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V+VK  GG L I W+ N H V MTG A   + G++D+
Sbjct: 242 IRRKLLDSPVTVKARGGTLEITWNGNGHEVTMTGPAVIVFNGEIDL 287


>gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073]
 gi|29839329|sp|Q8FBN6|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972]
          Length = 274

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P   +        + +       L    VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
 gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
          Length = 274

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFPTETIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLSVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +   IP        ++   +      +       VSMGNPH +  VE D+   ++  
Sbjct: 121 PVWEPNKIPF-----IANKFEKNYILRTTVQTVLCGAVSMGNPHCVVQVE-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V + + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG A   ++G + +
Sbjct: 235 DNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVIYL 274


>gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
 gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
 gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 307

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 2   QSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + +M + F KM G GN  +V+D      + T +   A++        DQ++L+       
Sbjct: 13  RPAMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPD 72

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++
Sbjct: 73  VDFRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVT 132

Query: 118 VDMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P+ +   +P          +          +        VSMGNPHA+  V+ D 
Sbjct: 133 VDMGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDRTAWLSTVSMGNPHAVQVVD-DT 191

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA
Sbjct: 192 EAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVA 251

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
                  +  V V   GGGL I W      V MTG A   +EG LD+   K
Sbjct: 252 GIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302


>gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
 gi|123628370|sp|Q47JN0|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
          Length = 276

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D      +++ + +  L+        DQI+L+       +D   
Sbjct: 3   LKFSKMHGLGNDFVVLDGVRQSVSLSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+       ++    ET+RGI+  +   DG+++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDEGLTDKREIRVETMRGIISPRLEGDGNVTVDMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     D                     VVSMGNPHA+  V+  +    +  
Sbjct: 123 PRFLPAEIPFLAEDDV-----IIHLLDVADETLETSVVSMGNPHAVQVVD-SVDTAPVGE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ KHP F   VN    ++    ++ LR +ERG G T ACG+ ACA+VVA       
Sbjct: 177 HGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVAGIRRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V   GG L I W  +   V MTG A   + G++++
Sbjct: 237 DSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276


>gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 274

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G ++     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  VE D+   ++  
Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTEIQTVLCSAVSMGNPHCVVQVE-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +  V V + GG L IEW    H ++MTG A   ++G +
Sbjct: 235 DNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272


>gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166224237|sp|A0KFI1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 276

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++DF+KM G+GN  +V+D        +++ I  L+       FDQ++L+    D  +D  
Sbjct: 2   LIDFSKMHGLGNDFMVVDGVTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +           T RG +V +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IP      +  +                  VSMGNPH +  V   +    +A
Sbjct: 122 VPQFEPGKIPF-----RAQKAEKTYLLRAQEHTVMCGAVSMGNPHCVIEV-PSVADAPVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++ +H  F E VN+    + +   + LR +ERGVG T ACG+ ACA+VV      K
Sbjct: 176 TLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQGK 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 236 LKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276


>gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
 gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
          Length = 276

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 2   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 62  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 122 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVETAAVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 176 TLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V V++ GG L I W      ++MTG A   ++G + +
Sbjct: 236 LAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 276


>gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF)
           (SP:P08885) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 275

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ ++    + 
Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275


>gi|197287149|ref|YP_002153021.1| diaminopimelate epimerase [Proteus mirabilis HI4320]
 gi|229813240|sp|B4F1X7|DAPF_PROMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|194684636|emb|CAR46550.1| diaminopimelate epimerase [Proteus mirabilis HI4320]
          Length = 274

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +      +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +     + I  +    L    VVSMGNPH +  VE D+   ++ S
Sbjct: 121 PEFEPQKVPFRA---QKVEKTYIIRAMERTVLCG--VVSMGNPHCVIQVE-DIKTAEVES 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G++L +H  F E  N+   +V    +L LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +R V V + GG L IEW    + ++MTG A   ++G + +
Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274


>gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617]
          Length = 282

 Score =  241 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 9   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G ++    +D  + V+MGE
Sbjct: 69  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 129 PNFEPQQIPF-----RANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQVD-NVKTAAVET 182

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 183 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 242

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H +FMTG A   ++G + +
Sbjct: 243 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 282


>gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
 gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
          Length = 286

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           S+++ F KM G+GN  +V+D    +   + D I  L+       FDQ++L+    D  +D
Sbjct: 10  STLIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 69

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV+ CGNG RC  RF+ ++    +      T  G +  +  RDG ++V+
Sbjct: 70  FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 129

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+L+   IP         +       +          VSMGNPH +  V+D +   D
Sbjct: 130 MGIPVLEPSKIPFTAK-----KVEKTYLLLASSGTYLCGAVSMGNPHCVIEVDD-VAAAD 183

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  L  H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV     
Sbjct: 184 VDTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGIQQ 243

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            K +R V V + GG L+I W      ++MTG A+  ++G++
Sbjct: 244 GKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284


>gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2]
          Length = 276

 Score =  241 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + D I  L+       FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFMVIDNVTQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+MG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL       ++         +        VSMGNPH +  VE D+    +  
Sbjct: 123 PEFEPAKIPLKA-----NKQENTYILRVNDKTLFYGAVSMGNPHCVMEVE-DVDTAPVKE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ ++  F EGVN+   ++ +   + LR +ERG G T ACGS ACA+V       K 
Sbjct: 177 IGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIGQIQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           ++ V V + GG L I W   ++V  MTG A   ++G +++
Sbjct: 237 SKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276


>gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
 gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
 gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163]
          Length = 274

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G ++    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPQQIPF-----RANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQVD-NVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274


>gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a]
 gi|254767105|sp|B7MR29|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a]
          Length = 274

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNTDGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P   +        + +       L    VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
 gi|81643660|sp|Q6CZG8|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
          Length = 274

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P            + +    H  L    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVETAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F +  N+   +V   +++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|293391245|ref|ZP_06635579.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951779|gb|EFE01898.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 274

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 137/278 (49%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAMTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K+    T  G ++     DG++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKNIAVSTQNGKMLLTVKEDGNVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  VE D+   ++  
Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTEIQTVLCSAVSMGNPHCVVQVE-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +  V V + GG L IEW    H ++MTG A   ++G +
Sbjct: 235 DNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272


>gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430]
 gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
 gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
 gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430]
 gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158]
          Length = 274

 Score =  241 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G ++    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PGFEPQQIPF-----RANKAENIYLMRAVEQTVMCGVVSMGNPHCVIQVD-NVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274


>gi|269137480|ref|YP_003294180.1| diaminopimelate epimerase [Edwardsiella tarda EIB202]
 gi|267983140|gb|ACY82969.1| diaminopimelate epimerase [Edwardsiella tarda EIB202]
 gi|304557553|gb|ADM40217.1| Diaminopimelate epimerase [Edwardsiella tarda FL6-60]
          Length = 274

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R+     T  G +      D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVGEDDRVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP   +     +                  VSMGNPH +  VE D+    +  
Sbjct: 121 PQFEPGRIPFKAA-----KAEKTYILRVAQQTVLCGAVSMGNPHCVLQVE-DVSRAQVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+   +V   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMQVVERDHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      + MTG A   ++G + +
Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274


>gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 275

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/281 (30%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGS+V  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSDVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275


>gi|207727618|ref|YP_002256012.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 307

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 135/291 (46%), Gaps = 8/291 (2%)

Query: 2   QSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + +M + F KM G GN  +V+D      + T +   A++        DQ++L+       
Sbjct: 13  RPAMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPD 72

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++
Sbjct: 73  VDFRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVT 132

Query: 118 VDMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P+ +   +P          +          +        VSMGNPHA+  V+ D 
Sbjct: 133 VDMGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDRTAWLSTVSMGNPHAVQVVD-DA 191

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             + +   G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA
Sbjct: 192 EAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVA 251

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
                  +  V V   GGGL I W      V MTG A   +EG LD+   K
Sbjct: 252 GIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302


>gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22]
 gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22]
          Length = 274

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 130/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F E  N+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 AETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274


>gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
 gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
 gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 274

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  LS       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P   +     +   +      L      VVSMGNPH +  V+ D+    +  
Sbjct: 121 PIWEPSQVPFTAN-----KFEKNYILRTELQTVLCGVVSMGNPHCVLQVD-DVKTAPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+S  +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 235 DNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL 274


>gi|308188854|ref|YP_003932985.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
 gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
          Length = 282

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 9   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V     D  + V+MGE
Sbjct: 69  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNMGE 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      + ++                  VSMGNPH +  VE  +    +  
Sbjct: 129 PNFEPQQVPF-----RANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SVKTAQVEL 182

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F + VN+    + + E + LR +ERG G T ACGS ACA+V         
Sbjct: 183 LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGVL 242

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      ++MTG A   ++G + +
Sbjct: 243 APKVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 282


>gi|254495752|ref|ZP_05108666.1| diaminopimelate epimerase [Legionella drancourtii LLAP12]
 gi|254355030|gb|EET13651.1| diaminopimelate epimerase [Legionella drancourtii LLAP12]
          Length = 308

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 4   SM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           +M + F KM G+GN  +VID      N+    I  L+  +    FDQ++LI       +D
Sbjct: 29  NMRIKFTKMHGLGNDFIVIDGINQSINLQPLQIAKLAQRNTGIGFDQLLLIERSTHTGID 88

Query: 62  AFIRIINCDGSEVQSCGNGMRC--VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV  CGNG RC  V     +   +   T  T    +  + N D S+ V+
Sbjct: 89  FNYRIFNADGQEVGQCGNGARCLAVFAKYYNLTHKNHLTVATTTTQMSLQINADNSVRVE 148

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L+   IPL+      +    +   + H        +S+GNPHA+  V+ D+    
Sbjct: 149 MGIPQLNPAAIPLSAEHQAAE----YQLELQHGQTATMHAISVGNPHAVLLVK-DVETAP 203

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G+ ++ HP F    N+   ++ + + + LR +ERG G T ACGS A A+V      
Sbjct: 204 VPTLGHEISIHPRFPAQANVGFMQIINPQHIKLRVYERGCGETLACGSGAVAAVAIGRLY 263

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           H+ ++ V+V + GG L+I+W D    + +TG A   +EG+L
Sbjct: 264 HRLDKQVTVSLPGGELIIDWPDFTAPITLTGPAVFVYEGQL 304


>gi|253690336|ref|YP_003019526.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259595059|sp|C6DHB7|DAPF_PECCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|251756914|gb|ACT14990.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 274

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P            + +    H  L    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SANVRVSLPGGDLDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
 gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75]
 gi|254767103|sp|B7UNC6|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75]
          Length = 274

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431432|sp|P57962|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 274

 Score =  240 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G ++     DG I ++MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTA-----NKFEKNYILRTSIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW      +FMTG+A   ++G + +
Sbjct: 235 DSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274


>gi|242237690|ref|YP_002985871.1| diaminopimelate epimerase [Dickeya dadantii Ech703]
 gi|242129747|gb|ACS84049.1| diaminopimelate epimerase [Dickeya dadantii Ech703]
          Length = 274

 Score =  240 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +     +                 VVSMGNPH +  VE ++    + +
Sbjct: 121 PNFEPQQVPFRAA-----KSEKTYILRVAERTVMCGVVSMGNPHCVIQVE-NVDTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++ +  ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIINRNAIQLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V+V++ GG L I W    N +FMTG A   ++G + +
Sbjct: 235 AADVNVRLPGGELNIHWDGPGNPLFMTGPATHVYDGFIHL 274


>gi|300714800|ref|YP_003739603.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
 gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
          Length = 274

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P      + ++                 VVSMGNPH +  V+  +    + S
Sbjct: 121 PNFDPQQVPF-----RANKAENLYLMRVAEQTIMCGVVSMGNPHCVLQVD-SVKTAAVES 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
 gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
          Length = 292

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 132/286 (46%), Gaps = 7/286 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      + T +   A++        DQ++L+       VD   
Sbjct: 3   LHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG 
Sbjct: 63  RIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P          +          +        VSMGNPHA+  V+ D   + +
Sbjct: 123 PVFEAARLPFVPDGLPTRVEGRDAQHALQVNGRTAWLSTVSMGNPHAVQVVD-DTEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
             +  V V   GGGL I W      V MTG A   +EG LD+   K
Sbjct: 242 LLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287


>gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
 gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
          Length = 274

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 130/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +  +                 VVSMGNPH +  VE ++    +  
Sbjct: 121 PNFEPQQVPF-----RAVKPEKTYILRAAERTVLCGVVSMGNPHCVLQVE-NVDSASVEE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 AADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDGFIHL 274


>gi|323143040|ref|ZP_08077745.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066]
 gi|322417181|gb|EFY07810.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066]
          Length = 277

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 144/282 (51%), Gaps = 10/282 (3%)

Query: 5   MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           M+  F+KM G+GN  +V+D        + + I  LS       FDQ++L+    D  VD 
Sbjct: 1   MILKFSKMHGLGNDFMVVDGVTQKIFFSPELIKRLSDRHFGVGFDQLLLVEPPYDPEVDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEVQ CGNG RC VRF+       ++     T+ G+L  K N D S++V+M
Sbjct: 61  HYRIFNADGSEVQMCGNGARCFVRFVVDHGLTNKRDIKVSTVSGVLRLKLNNDDSVTVNM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P LD + +P          +    G            VSMGNPHA+  V+ D+    +
Sbjct: 121 GVPQLDPEKLPFKAEAQSESYELCVKGFDAVTIG----AVSMGNPHAVINVK-DVKTAPV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+ KH  F E VN+  ++  +   ++LR +ERG G T ACG+ ACA+VVA    H
Sbjct: 176 HELGSLVEKHERFPEKVNVGFSQKVNDHEINLRVFERGCGETLACGTGACAAVVAGIVQH 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +    V V + GG L I W   N  V M+G A   +EG++ I
Sbjct: 236 RLVSPVKVNLPGGSLNISWDGKNSPVMMSGPAVLVYEGQIVI 277


>gi|41237|emb|CAA31413.1| unnamed protein product [Escherichia coli K-12]
          Length = 275

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVTTANGRMVLTVTDDDLVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHWLIQVD-DVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   + + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKRDDIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275


>gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
 gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
          Length = 276

 Score =  240 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D            I  LS  +    FDQ++++    D  +D  
Sbjct: 2   LLKFTKMHGLGNDFVVVDAVSRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  +F+  R    ++    ET RG +  +    G ++VDMG
Sbjct: 62  YRIYNSDGSEVEHCGNGARCFAKFVLDRELTNKRIINVETKRGAIQLRVLDGGLVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  + + +P                   +L       VS+GNPHA+  V+  +    +A
Sbjct: 122 APSFEPQDLPFTAE-PCDVLYSIMAEDTEYLITP----VSVGNPHAVIKVDQLIDDE-VA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F   VN+   +V + + ++LR +ERGVG T ACG+ ACA+VVA      
Sbjct: 176 KVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAAVVAGIKQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V+  + GG L IEW      + MTG A+K +EG++ +
Sbjct: 236 LSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQIYL 276


>gi|229807518|sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas
           arsenicoxydans]
          Length = 283

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 7/282 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +VID      + T      L+        DQ++++   Q A VD   
Sbjct: 3   IKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   +G I+VDMG 
Sbjct: 63  RIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           PIL  + +P   S      +                  V+SMGNPHA+  V  D  H  +
Sbjct: 123 PILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVV-ADADHAPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 182 REDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                + V+  GG L I W  +N  V +TG A   +EG++++
Sbjct: 242 LLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283


>gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999]
          Length = 276

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +V+F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D   D  
Sbjct: 2   LVEFTKMHGLGNDFMVVDCITQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +   +  T  G ++    +DG ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVKYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +P+        +                  VS+GNPH +  V+ D+  YD+ 
Sbjct: 122 RPRFAPDDVPMKA-----QKQENTYIIREADQTFFCGAVSLGNPHCVMVVD-DIDTYDVL 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F + VN+   ++    ++ LR +ERGVG T ACGS ACA+V       K
Sbjct: 176 GVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAIGQQQGK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
               V+V + GG L I W  ++H + MTG A+  ++GK+
Sbjct: 236 LGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKI 274


>gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
 gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
          Length = 283

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 11/282 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++++ F+KM+G+GN  +VID       ++++ I   +       FDQ++++ +     VD
Sbjct: 2   TNLLKFSKMQGLGNDFMVIDGTQETITLSTEEIRFWANRYFGVGFDQLLMVENSAQGDVD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEVQ CGNG RC  +F+  +    +     ET  G++V      G + V+
Sbjct: 62  FRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEIRVETASGMIVLYITDQGWVRVN 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P    + +P     +    +    G    +       VSMGNPHA+  V  DL    
Sbjct: 122 MGAPNFLPEALPFDMPLESEQYELDVDGERFEIG-----AVSMGNPHAVLRV-ADLGAAP 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  +  H +F E VN+  A     + + LR +ERG   T ACG+ ACA++V    L
Sbjct: 176 VAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAETLACGTGACAAMVVLRNL 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKL 279
            + +  V+V + GG L IEW+ +    V+MTG A   +EG++
Sbjct: 236 GEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277


>gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 276

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+  +    FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFVVVDCITQNVFFSPDLIRRLADRNTGIGFDQLLIVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DG EV+ CGNG RC  RF+  +     +     T +G ++     D  ++V+MG P
Sbjct: 64  IFNSDGGEVEQCGNGARCFARFVRMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         R++ +I       L     VS+GNPH +  VE +L    +   
Sbjct: 124 EFEPSKIPFKAK----QREKTYILRAQDKTLFCG-AVSLGNPHVVTVVE-ELSDALIDEI 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G +L  H  F E VN    +V S   + LR +ERG G T ACG+ ACA+V         +
Sbjct: 178 GPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVAVGIAQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V+V + GG L I W  +   ++MTG A   ++G+L
Sbjct: 238 ENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQL 274


>gi|271502382|ref|YP_003335408.1| diaminopimelate epimerase [Dickeya dadantii Ech586]
 gi|270345937|gb|ACZ78702.1| diaminopimelate epimerase [Dickeya dadantii Ech586]
          Length = 274

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPDLIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +        + +    H  L    VVSMGNPH +  V+ ++    +  
Sbjct: 121 PNFEPQQVPFRAA---KPEKTYILRAAEHTVLCG--VVSMGNPHCVLQVD-NVDTAPVEE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 QGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AADVKVQLPGGELDIHWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15]
          Length = 292

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 131/286 (45%), Gaps = 7/286 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      + T +   A++        DQ++L+       VD   
Sbjct: 3   LHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG 
Sbjct: 63  RIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGIATLTMQPDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P          +          +        VSMGNPHA+  V+ D   + +
Sbjct: 123 PVFEAARLPFVPDGLPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQVVD-DAQAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 REDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
             +  V V   GG L I W      V MTG A   +EG LD+   K
Sbjct: 242 LLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287


>gi|227114725|ref|ZP_03828381.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P            + +    H  L    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVETAKVDT 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHAVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           + +V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SASVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|71278746|ref|YP_266845.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H]
 gi|123634292|sp|Q48AR8|DAPF_COLP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71144486|gb|AAZ24959.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H]
          Length = 276

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  LV+D    +  ++ + I   +       FDQ++++    D  +D  
Sbjct: 2   LVNFSKMHGLGNDFLVLDNVTQNVFLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  +F+  +        +  T  G +     RDG+ISV M 
Sbjct: 62  YRIYNADGSEVGQCGNGARCFAKFVRMKGLCNKHKIKVSTSTGKMNLHIERDGNISVTMP 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  + K IP         +        +         VSMGNPH +  V+  +   D+ 
Sbjct: 122 VPQFEPKKIPFTA-----QKTEGTYILRSESETVLCGAVSMGNPHCVVTVD-SVAEADVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  L+ H  F E  N+    + S   + LR +ERG   T ACGS ACA+VV      K
Sbjct: 176 SLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVVIGYMQKK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             + V+V++ GG L I W    H V M+G A   ++G++ I
Sbjct: 236 LAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQISI 276


>gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
 gi|229813236|sp|B2J3A7|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
          Length = 279

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R     +     AI           D ++     ++   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  F          + S+   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP   +   ++     +             V+MGNPH I FVE D+   +
Sbjct: 122 MGLPRLLAGEIPTTLA--PVEEKVISVPLEVAGKTWEVTCVNMGNPHCITFVE-DVAAIE 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L S G     HP F + +N    +V   + L +R WERG G+T ACG+ ACAS+VA    
Sbjct: 179 LESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            K +R  +V++ GG L IEW + +  V+MTG A++ + GKL
Sbjct: 239 GKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279


>gi|170769865|ref|ZP_02904318.1| diaminopimelate epimerase [Escherichia albertii TW07627]
 gi|170121303|gb|EDS90234.1| diaminopimelate epimerase [Escherichia albertii TW07627]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+    +  FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLSVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +  + ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274


>gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
 gi|229807512|sp|B2VI49|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V    +D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPQQIPF-----RANKAENIYLMRAAEQTVMCGVVSMGNPHCVLQVD-NVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQASL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|294637957|ref|ZP_06716224.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685]
 gi|291088889|gb|EFE21450.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R+     T  G +    + D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVDDDERVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   IP   +     +                  VSMGNPH +  VE D+    +A 
Sbjct: 121 PQFDPGRIPFKAA-----KAEKTYILRVAQQTVLCGAVSMGNPHCVLQVE-DVSQAQVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERVNVGFMQVVDRGYIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      + M G A   ++G + +
Sbjct: 235 DEQVRVELPGGTLHICWQGPGTPLLMIGPATHVYDGFIHL 274


>gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-NVETAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274


>gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
 gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
          Length = 292

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 135/286 (47%), Gaps = 7/286 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      + T +   A++        DQ++L+       VD   
Sbjct: 3   LHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG 
Sbjct: 63  RIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P        +++ D        +        VSMGNPHA+  V+ D   + +
Sbjct: 123 PVFEAARLPFLPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIVD-DTEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H +F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285
             +  V V   GG L I W      V MTG A   +EG LD+   K
Sbjct: 242 VLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDLDALK 287


>gi|238918090|ref|YP_002931604.1| diaminopimelate epimerase, [Edwardsiella ictaluri 93-146]
 gi|259595054|sp|C5BBD4|DAPF_EDWI9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|238867658|gb|ACR67369.1| diaminopimelate epimerase, putative [Edwardsiella ictaluri 93-146]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 125/280 (44%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R+     T    +      D  ++V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNSRMTLHVGEDDRVTVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP   +     +                  VSMGNPH +  VE D+    +  
Sbjct: 121 PQFEPGRIPFKAA-----KAEKTYILRVAQQTVLCGAVSMGNPHCVLQVE-DISRAQVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   +V     + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPSLESHERFPERVNVGFMQVVERSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      + MTG A   ++G + +
Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274


>gi|157368431|ref|YP_001476420.1| diaminopimelate epimerase [Serratia proteamaculans 568]
 gi|167012038|sp|A8G852|DAPF_SERP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157320195|gb|ABV39292.1| Diaminopimelate epimerase [Serratia proteamaculans 568]
          Length = 274

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   + +      + +    H  L    VVSMGNPH +  V+ D+    +  
Sbjct: 121 PNFDPQTVPFRATKE---EKTYIMRAAEHTVLCG--VVSMGNPHCVLQVD-DVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274


>gi|329113599|ref|ZP_08242379.1| Diaminopimelate epimerase [Acetobacter pomorum DM001]
 gi|326697121|gb|EGE48782.1| Diaminopimelate epimerase [Acetobacter pomorum DM001]
          Length = 288

 Score =  239 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 101/283 (35%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
            S +  F KM G+GN  +++D RG H  +T   I AL+        DQ++ +        
Sbjct: 17  HSMLTSFRKMHGLGNDFVILDERGGHLPLTPARIAALAHRRRGIGCDQLVTLRPACAEGA 76

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D F+R  N DGSE  +CGN  RCV   +      ++   +T  G L A+   +G I+VDM
Sbjct: 77  DVFVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDM 136

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L+W+ +PL    D +                +P   SMGNPHA FF    +  +  
Sbjct: 137 GEPRLNWQDVPLVAEMDTLHL----------PLEGDPAAASMGNPHATFF----VEDFAR 182

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G  L   P+F E  N+  AR+     + L+  ERG G+T ACGS ACA+VV +    
Sbjct: 183 LSQGQALEHDPLFPERANIGFARIDGSARMRLKVHERGAGVTEACGSGACAAVVNAARRG 242

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
              R   V++ GG L IEW  NNHV MTG A   +EG +D+  
Sbjct: 243 LVERVCEVELDGGILQIEWAPNNHVLMTGSATTAFEGTVDLAA 285


>gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
 gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
          Length = 290

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  +V+D      ++ +D I  L+       FDQ++L+       VD   
Sbjct: 15  LSFTKMQGIGNDFIVVDGYSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDFRY 74

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VR++  +    ++    +T RGI++ +   +G ++V+MGE
Sbjct: 75  RIFNADGGEVEQCGNGARCFVRYVHDKSLTSKREIRVQTARGIILPRLEDNGLVTVNMGE 134

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P        DR+                V SMGNPHA+  VE D+    +  
Sbjct: 135 PRFEPAEVPF-----IADREAMTYLLQVADQALEISVASMGNPHAVTVVE-DVDTAPVER 188

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+V +       
Sbjct: 189 LGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASGIRRGLL 248

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
              V V   GG L+I W      V+MTG A+  +EG +DI+
Sbjct: 249 QSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSIDIE 289


>gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB]
 gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB]
          Length = 274

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      + ++                  VSMGNPH +  VE  +    +  
Sbjct: 121 PNFEPQQVPF-----RANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SVKTAQVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F + VN+    + + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      ++MTG A   ++G + +
Sbjct: 235 APNVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 274


>gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
 gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
          Length = 328

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 10/284 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
            ++ F KM G+GN  +V+D       +  + I  L+       FDQ++++       VD 
Sbjct: 34  GVLRFTKMHGLGNDFMVVDAISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDVDF 93

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF        +K    +T  GI+  +  +DG + VDM
Sbjct: 94  RYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVMRVQTAGGIIELRVGKDGLVKVDM 153

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L+   +P +   +        +   N        VVSMGNPH +   + D+    +
Sbjct: 154 GVPRLEPATVPFSAD-EFAPVYNLDVNGQNIEL----SVVSMGNPHGVILTD-DVDSAPV 207

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G LL KH  F    N+   ++     + LR +ERG G T ACG+ ACA+VVA     
Sbjct: 208 ATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAVVAGCLRG 267

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283
             +  V V++ GG L+IEW      V M G     +EG+L +  
Sbjct: 268 LLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRLPA 311


>gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
 gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
          Length = 274

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P            + +    H  L    VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVD-DVETAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++   +++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGSL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I+W    H +FMTG A   ++G + +
Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274


>gi|238784733|ref|ZP_04628736.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970]
 gi|238714329|gb|EEQ06338.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970]
          Length = 274

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P      +  +                 VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFDPQSVPF-----RATKAEKTYIFRAAEQTVLCGVVSMGNPHCVLQVD-DVAVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S +++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDNIRLRVYERGAGETQACGSGACAAVAVGIQQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V++ GG LLI W    H ++MTG A   ++G + +
Sbjct: 235 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|320539386|ref|ZP_08039055.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson]
 gi|320030511|gb|EFW12521.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson]
          Length = 274

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAITQNVYFSPELIRRLSDRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVQLKGLTNKCELRVSTQSGRMVLNVTGNDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P            + +    H  L    +VSMGNPH +  V+ D+    +A 
Sbjct: 121 PNFDPQAVPFRA---TKAEKTYIMRAAEHTVLCG--IVSMGNPHCVLQVD-DVNTAKVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGSGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 SEEVRVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274


>gi|239993650|ref|ZP_04714174.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
          Length = 276

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I  L+       FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+MG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL  +     ++  +I  V    L      SMGNPH +  V+ D+   ++A 
Sbjct: 123 PEFEPANIPLKAN----KQENTYILRVGESTLFIGSA-SMGNPHCVMEVD-DVDTANVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ KH  F EGVN+   ++ +   + LR +ERG G T ACGS ACA+V       K 
Sbjct: 177 IGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
            + V V + GG L I W   ++V  MTG A+  ++G +++
Sbjct: 237 GKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276


>gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
 gi|123170519|sp|Q15NG5|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
          Length = 276

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I+ L+       FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFVVIDNVTQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R      T  G +V    RDG I+V+MGE
Sbjct: 63  RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IPL  +     +         +        VSMGNPH +  V+ D+   D+  
Sbjct: 123 PIFEPAKIPLKAN-----KQENIYIIRENDHTFFCGAVSMGNPHCVLLVD-DVETADVEG 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F EG N+   ++ +   + LR +ERGVG T ACGS ACA+V       K 
Sbjct: 177 IGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           N+ V+V + GG L I W     +  MTG A+  ++G + +
Sbjct: 237 NKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276


>gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
          Length = 274

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V        I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|90581047|ref|ZP_01236847.1| diaminopimelate epimerase [Vibrio angustum S14]
 gi|90437743|gb|EAS62934.1| diaminopimelate epimerase [Vibrio angustum S14]
          Length = 276

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+GN  +V+D    +   + DAI  L+       FDQ++++    D   D   
Sbjct: 3   INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF++ +    +   +  T  G ++ K   D  ++V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP+         ++ +I       L      SMGNPH    V DD+   D+ +
Sbjct: 123 PIFEPNKIPMKAK----QAEKTYILRAGEQTLFCG-AASMGNPHC-VTVVDDVDTADVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRVQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +  V V + GG L I W      +FMTG A   ++G+ 
Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274


>gi|197103593|ref|YP_002128970.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1]
 gi|229813239|sp|B4RCE2|DAPF_PHEZH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|196477013|gb|ACG76541.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1]
          Length = 277

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 147/281 (52%), Gaps = 7/281 (2%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           M ++M   F KM G+GN  +V++ R      T+  + A++        DQ++ +   +  
Sbjct: 1   MSAAMGRPFLKMNGLGNDFVVVETRSAPFEPTAAQVRAIADRATGIGCDQLIAVDPAE-- 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             DA +R  N DG EV +CGNG RCV   L     +     ET  G LVA    +  +SV
Sbjct: 59  GADAHVRFWNADGEEVGACGNGTRCVGWLLMQSSGKDEAVIETRAGRLVATRAGERLVSV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+W  IPLA   D    D       +   +  P  VSMGNPH +FFV  D    
Sbjct: 119 DMGPPRLEWNEIPLAEPHDTRALDVVLY--HHADLMAPPGCVSMGNPHVVFFV-PDAEQA 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
             A  G  +  HP+F E VN+  A+V + + + LR WERG GLT ACG+ ACA++VA+  
Sbjct: 176 PAAEAGPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASR 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                R  ++++ GG L +EW  + HV MTG A  +++G+L
Sbjct: 236 RGLIGRHATMELDGGELFVEWRADGHVIMTGPAAVDFQGEL 276


>gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
 gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
          Length = 276

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F KM+G+GN  +VID      ++T+  +  ++        DQ++L+       VD   
Sbjct: 3   VAFTKMQGLGNDFVVIDTISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  +    ++    +T  G++      D  ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARFVREQGLTGKERLQVQTAGGVIRLHLETDKQVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     +  D                   VSMGNPH +  V   +    +A 
Sbjct: 123 PRFAPDEIPFKADHE-ADSYLLEFDKQRVEIG----AVSMGNPHCVLRVAA-IDAAPIAC 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G +L +HP F + VN+    V S   + LR +ERG G T ACG+ ACA++V        
Sbjct: 177 WGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMVIGRRRGWL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V+V + GG L I W      V+MTG A+  +EG +++
Sbjct: 237 SEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276


>gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 276

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I  L+       FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFVVIDNVTQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    R      T  G +V    RDG ++V+MGE
Sbjct: 63  RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNMGE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL  +     +         +        VSMGNPH +  V+ D+   D+  
Sbjct: 123 PEFEPSKIPLKAN-----KQENIYIIRENDHTFFCGAVSMGNPHCVLLVD-DIATTDVEG 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F EG N+   ++ +   + LR +ERGVG T ACGS ACA+V       K 
Sbjct: 177 IGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           N+ V+V + GG L I W     +  MTG A+  ++G + +
Sbjct: 237 NKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276


>gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
 gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
          Length = 274

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  +F+T +    +K  +    +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFAQFVTLKGLTNKKDISVSAQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392165|sp|P0A1F2|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|60392166|sp|P0A1F3|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81599710|sp|Q5PKM6|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082839|sp|A9MY70|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813242|sp|B5EZS3|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813243|sp|B5FNU5|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813244|sp|B4TB37|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813245|sp|B4SZ51|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813246|sp|B5BIV6|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813247|sp|B4TNV9|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205373|gb|EFZ90347.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 274

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274


>gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20]
 gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
 gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
 gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
 gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
 gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
 gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
 gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
 gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
 gi|1169225|sp|P44859|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81336228|sp|Q4QME8|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
           Epimerase At 1.7a
 gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
           With An Irreversible Inhibitor Ll-Azidap
 gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
           With An Irreversible Inhibitor Dl-Azidap
 gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20]
 gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
 gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
 gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
 gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21]
 gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
 gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
 gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866]
 gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
 gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
          Length = 274

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99]
 gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99]
          Length = 274

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 88/273 (32%), Positives = 138/273 (50%), Gaps = 5/273 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG RC  RF+ ++    ++     T  G L  +  +DG+++V+MG P+L+ 
Sbjct: 61  DGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVLEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      +           + +       VSMGNPH +  VE D+   D+   G LL
Sbjct: 121 SKIPFNAKRPEKTYLLQTDTAESKMQTFLCGAVSMGNPHCVLDVE-DIQAADVEGIGALL 179

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K ++ V 
Sbjct: 180 TQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQLQGKLDKRVR 239

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           V + GG L I W      ++MTG A+  ++G++
Sbjct: 240 VDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQI 272


>gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
 gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
          Length = 274

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D        + D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGITQSVYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +    +K     T +G +V   N D ++ V+MGE
Sbjct: 61  RIFNADGSEVEQCGNGARCFARFVRLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      +      VVSMGNPH +  VE D+   ++  
Sbjct: 121 PIWEPAKVPF-----IANKFEKNYILRTDIQTVLCGVVSMGNPHCVLQVE-DVKTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F    N+   +V + + + LR +ERG G T ACG+ ACA+V         
Sbjct: 175 LGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L+IEW      ++MTG+A   ++G + +
Sbjct: 235 DNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274


>gi|293393892|ref|ZP_06638199.1| diaminopimelate epimerase [Serratia odorifera DSM 4582]
 gi|291423719|gb|EFE96941.1| diaminopimelate epimerase [Serratia odorifera DSM 4582]
          Length = 274

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +++D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMMVDAVTQNVYFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   +        + +    H  L    VVSMGNPH +  V+ D+    +  
Sbjct: 121 PNFDPQTVPFRAA---KAEKTYIMRAAEHTVLAG--VVSMGNPHCVLQVD-DVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDRIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGTPLFMTGPATHVYDGFIHL 274


>gi|186474847|ref|YP_001856317.1| diaminopimelate epimerase [Burkholderia phymatum STM815]
 gi|229807493|sp|B2JJY4|DAPF_BURP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|184191306|gb|ACC69271.1| Diaminopimelate epimerase [Burkholderia phymatum STM815]
          Length = 286

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 8/284 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N+T   + AL+        DQ++++       VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F   +    ++S   +  +G++      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRDSRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P   S  +  R+          +   R   VVSMGNPHA+  V+ D+  + +
Sbjct: 123 PVFEPVQVPFDASGVEARREGNDTLYALEVNGETRWVSVVSMGNPHAVQVVD-DVEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  HP F + VN    ++     + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LVDGPVIETHPRFPQRVNAGFMQIVGRSEVKLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W+    + + M G A   +EG++++ 
Sbjct: 242 LLDAPVKVHTHGGTLTITWNGESASSLMMAGPAATVFEGEIELA 285


>gi|326625664|gb|EGE32009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 275

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +       + ++                 VVSMGNPH +  V+ ++    + 
Sbjct: 121 EPNFEPAQVTF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275


>gi|148652161|ref|YP_001279254.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1]
 gi|172048462|sp|A5WCB3|DAPF_PSYWF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148571245|gb|ABQ93304.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1]
          Length = 293

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+  +    FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ +R    ++    ET  GIL    +  G + VDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP         ++ +H+           +V +MGNPHA+  V+ D+   D+ 
Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKVD-DILTADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V        
Sbjct: 179 KLGKAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREGW 238

Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +    +  ++ GG LLI W     V MTG     +EG  
Sbjct: 239 LDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVF 278


>gi|238798589|ref|ZP_04642065.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969]
 gi|238717545|gb|EEQ09385.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969]
          Length = 278

 Score =  238 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 65  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P            +      H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 125 PNFDPQSVPFRA---TKAEKTYIFRAAEHTVLCG--VVSMGNPHCVLQVD-DVSVANVAL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E++ LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPVLESHERFPERANIGFMQVVSRENIRLRVYERGAGETQACGSGACAAVAVGIQQELL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V++ GG LLI W    H ++MTG A   ++G + +
Sbjct: 239 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 278


>gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 274

 Score =  238 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P   +        + +  V    L    VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPAQVPFRAN---KAEKTYIMRAVEQTILCG--VVSMGNPHCVIQVD-NVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274


>gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
 gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
          Length = 274

 Score =  238 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 144/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIQRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G ++     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMILTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +      ++ +I   +   +     VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN----KFEKNYILRTDIQTVLCGT-VSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDGFITL 274


>gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
 gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
          Length = 274

 Score =  238 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W      +FMTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274


>gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305]
 gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305]
          Length = 274

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +G + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQIPFTA-----NKFEKNYILRTSLQTVLCGVVSMGNPHCVLQVE-DIQTAPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 235 DSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDGFVKL 274


>gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
 gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
 gi|81561459|sp|Q5N013|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123556543|sp|Q31LW2|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
 gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
          Length = 280

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + FAK  G+GN  +++D R      +T +  +     +     D ++          D  
Sbjct: 3   LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPG-SGDSDYV 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC+ +F        +  +   T  G++V      G ++VDMG
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              L    IP   +                        VSMGNPH I FVE D+    LA
Sbjct: 122 PAYLKPVEIPTTLTG--TGDRVVEADLEVGDRPWKVTTVSMGNPHCITFVE-DVAAVPLA 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L   HP+F +  N     V   + L +R WERG G T ACG+ ACA++VA+    +
Sbjct: 179 EIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLTGR 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           ++R  +V++ GG L IEW ++ H+FMTG A K + G +++  
Sbjct: 239 SDRQATVELPGGPLQIEWREDGHLFMTGPAVKVFSGSMELAA 280


>gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
 gi|259595063|sp|C5BUL6|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
          Length = 276

 Score =  238 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  ++ID       IT +    L+        DQ++++    +   D   
Sbjct: 3   LRFTKMHGLGNDFVMIDAISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV++CGNG RC            +     ET  G+L      D  ++V+MG 
Sbjct: 63  RIFNNDGSEVENCGNGARCFAVFVRQRQLTAKSDIVVETAAGLLRLHVLDDNQVTVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+L    IP     ++ +     +  +          VSMGNPHA+  V+ +L  + + +
Sbjct: 123 PVLAPAQIPFVTPHEQPEY-PLQLDNMEITI----SAVSMGNPHAVTLVD-NLASFPVKT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F   VN     + S + + LR +ERGVG T ACG+ ACA+VV+       
Sbjct: 177 LGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGIVRGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V+V + GG L I W      V MTG AK  + G++ +
Sbjct: 237 DTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276


>gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103]
 gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103]
 gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355]
          Length = 282

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 129/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 9   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFHY 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V     D  + V+MGE
Sbjct: 69  RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNMGE 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      + ++                  VSMGNPH +  VE       +  
Sbjct: 129 PNFEPQQVPF-----RANKAENLYLLRVAEQTVMFGAVSMGNPHCVIQVE-STKTAQVEL 182

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    + S E + LR +ERG G T ACGS ACA+V         
Sbjct: 183 LGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 242

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           ++ V V + GG L I W      ++MTG A   ++G + +
Sbjct: 243 SQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDGFIHL 282


>gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
 gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
          Length = 276

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +V+F+KM G+GN  +VID    +  I  D I  L+       FDQ++++    D  +D  
Sbjct: 2   LVNFSKMHGLGNDFMVIDNVTQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+  +           T  G +     +DG +SV+MG
Sbjct: 62  YRIFNSDGTEVEQCGNGARCFARFVRMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P L+   IP   +      + +     +H        VSMGNPH +  V+ D+    + 
Sbjct: 122 QPKLEPHTIPFKAAKR---ENTYIFRAQDHTVFCG--AVSMGNPHCVVEVD-DITTAPVN 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL  H  F +  N+   ++ S E + LR WERG G T ACG+ ACA+VV      K
Sbjct: 176 VLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGACAAVVVGILQKK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L + W    H V MTG A+  ++G++ +
Sbjct: 236 LAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276


>gi|253991594|ref|YP_003042950.1| diaminopimelate epimerase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638472|emb|CAR67094.1| diaminopimelate epimerase (ec 5.1.1.7) (dap epimerase)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783044|emb|CAQ86209.1| diaminopimelate epimerase [Photorhabdus asymbiotica]
          Length = 278

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+  +    FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +  + ++     T  G +V     D  + V+MGE
Sbjct: 65  RIFNSDGSEVAQCGNGARCFARFVRLKGLINKREIKVSTQSGRMVLSITNDDQVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP      +  R                 VVSMGNPH +  V  D+   ++  
Sbjct: 125 PEFEPHNIPF-----RALRAEKTYILRVIEKTVLCSVVSMGNPHCVIQV-ADVETAEVEI 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   ++ +   + LR +ERGVG T ACGS ACA+V         
Sbjct: 179 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 238

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W    N ++MTG A   ++G + +
Sbjct: 239 DSNVRVDLPGGSLFICWAGPGNPLYMTGPATHVYDGTIHL 278


>gi|262172885|ref|ZP_06040563.1| diaminopimelate epimerase [Vibrio mimicus MB-451]
 gi|261893961|gb|EEY39947.1| diaminopimelate epimerase [Vibrio mimicus MB-451]
          Length = 276

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I       L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEISWKGPGKALYMTGPATHVYDGQI 274


>gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b]
 gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b]
          Length = 274

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      + ++                  VSMGNPH +  VE ++    + +
Sbjct: 121 PNFEPQHVPF-----RANKAENLYLLRVAEQTVMFGAVSMGNPHCVIQVE-NVKTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E VN+    V + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      +FMTG A   ++G + +
Sbjct: 235 AEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274


>gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 275

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  LS       F+Q++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +   +P      + ++                 VVSMGNPH +  V+ ++    + 
Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVE 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V        
Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275


>gi|123440586|ref|YP_001004580.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225763|sp|A1JI90|DAPF_YERE8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|122087547|emb|CAL10328.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 274

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +        + +    H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFEPQSVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
 gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
          Length = 278

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  +SV+MGE
Sbjct: 65  RIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + IP            + +    H  L    VVSMGNPH +  V+ D+   ++  
Sbjct: 125 PNFEPQAIPFKA---IKAEKTYILRAAEHTVLCG--VVSMGNPHCVLQVD-DVSAANVEL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 238

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W      ++MTG A   ++G + +
Sbjct: 239 DEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDGFIHL 278


>gi|332977414|gb|EGK14191.1| diaminopimelate epimerase [Psychrobacter sp. 1501(2011)]
          Length = 293

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLELTEELIALLADRHMGIGFDQLLVVEPPMRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ +R    ++    ET  GIL    +  G + VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLTTDNYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP         ++ +H+           +V +MGNPHA+  V+ D+   D+ 
Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKVD-DILTADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V        
Sbjct: 179 KLGGAIESHPAFPEKVNVGFVQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREGW 238

Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +    +  ++ GG LLI W     V MTG     +EG  
Sbjct: 239 LDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVF 278


>gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
 gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
          Length = 274

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
 gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
          Length = 274

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|258543519|ref|YP_003188952.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634597|dbj|BAI00573.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637653|dbj|BAI03622.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640707|dbj|BAI06669.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643762|dbj|BAI09717.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646817|dbj|BAI12765.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649870|dbj|BAI15811.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652860|dbj|BAI18794.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655914|dbj|BAI21841.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-12]
          Length = 270

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 15/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +++D R  H ++T   I AL+        DQ++ +        D F+R 
Sbjct: 5   FRKMHGLGNDFVILDERNGHLSLTPARIAALAHRRRGIGCDQLVTLRPACAEGADVFVRF 64

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSE  +CGN  RCV   +      ++   +T  G L A+   +G I+VDMGEP L+
Sbjct: 65  FNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDMGEPRLN 124

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ +PLA   D +                +P   SMGNPHA FF    +  +   S G+ 
Sbjct: 125 WQDVPLAAEMDTLHL----------PLEGDPAAASMGNPHATFF----VEDFVRLSQGHA 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+  AR+     + L+  ERG G+T ACGS ACA+VV +       R  
Sbjct: 171 LEHDPLFPERANIGFARIDGPARMRLKVHERGAGVTEACGSGACAAVVNAARRGLIGRVC 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            V++ GG L IEW  NNHV MTG A   +EG +D+  
Sbjct: 231 EVELDGGVLRIEWAANNHVLMTGSATTAFEGTVDLAA 267


>gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 276

 Score =  237 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F+KM G+GN  +VID    +   + + I  L+       FDQ++++    D   D   
Sbjct: 3   VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +  + R      T  G +V    +DG ++V+MG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IPL  +     +                   SMGNPH +  V+ D+   ++A 
Sbjct: 123 PEFEPANIPLKAN-----KQENTYILRVGESTLFIGAASMGNPHCVMEVD-DVDTANVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ KH  FSEGVN+   ++ +   + LR +ERG G T ACGS ACA+V       K 
Sbjct: 177 IGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281
           ++ V V + GG L I W   ++V  MTG A+  ++G +++
Sbjct: 237 SKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276


>gi|270264255|ref|ZP_06192522.1| diaminopimelate epimerase [Serratia odorifera 4Rx13]
 gi|270041904|gb|EFA15001.1| diaminopimelate epimerase [Serratia odorifera 4Rx13]
          Length = 274

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   + +      + +    H  L    VVSMGNPH +  V+ D+    +  
Sbjct: 121 PNFDPQAVPFRATKE---ERTYIMRAAEHTVLCG--VVSMGNPHCVLQVD-DVKTAKVEL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    N +FMTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDGFIHL 274


>gi|283787514|ref|YP_003367379.1| diaminopimelate epimerase [Citrobacter rodentium ICC168]
 gi|282950968|emb|CBG90645.1| diaminopimelate epimerase [Citrobacter rodentium ICC168]
          Length = 274

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVLQVD-NVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGTGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 ADEVRVELTGGRLDIVWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|238763613|ref|ZP_04624573.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638]
 gi|238698091|gb|EEP90848.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638]
          Length = 274

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P            +      H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFDPQAVPFRA---TKAEKTYIFRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
 gi|166224259|sp|A5UDX5|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
          Length = 274

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VS+GNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSIGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846]
          Length = 274

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|332159816|ref|YP_004296393.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607641|emb|CBY29139.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664046|gb|ADZ40690.1| diaminopimelate epimerase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862563|emb|CBX72717.1| diaminopimelate epimerase [Yersinia enterocolitica W22703]
          Length = 274

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +        + +    H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFEPQSVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAIGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|121587735|ref|ZP_01677496.1| diaminopimelate epimerase [Vibrio cholerae 2740-80]
 gi|121728312|ref|ZP_01681343.1| diaminopimelate epimerase [Vibrio cholerae V52]
 gi|147673333|ref|YP_001218293.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|153214851|ref|ZP_01949659.1| diaminopimelate epimerase [Vibrio cholerae 1587]
 gi|153803077|ref|ZP_01957663.1| diaminopimelate epimerase [Vibrio cholerae MZO-3]
 gi|153818937|ref|ZP_01971604.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457]
 gi|153830024|ref|ZP_01982691.1| diaminopimelate epimerase [Vibrio cholerae 623-39]
 gi|161582035|ref|NP_229784.2| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|229508404|ref|ZP_04397908.1| diaminopimelate epimerase [Vibrio cholerae BX 330286]
 gi|229508915|ref|ZP_04398405.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|229515839|ref|ZP_04405297.1| diaminopimelate epimerase [Vibrio cholerae TMA 21]
 gi|229517029|ref|ZP_04406475.1| diaminopimelate epimerase [Vibrio cholerae RC9]
 gi|229520082|ref|ZP_04409510.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80]
 gi|229606677|ref|YP_002877325.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236]
 gi|255743921|ref|ZP_05417876.1| diaminopimelate epimerase [Vibrio cholera CIRS 101]
 gi|262151160|ref|ZP_06028299.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1]
 gi|262167029|ref|ZP_06034746.1| diaminopimelate epimerase [Vibrio cholerae RC27]
 gi|262190132|ref|ZP_06048418.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93]
 gi|21362496|sp|Q9KVL6|DAPF_VIBCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|172047519|sp|A5F4I6|DAPF_VIBC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121548034|gb|EAX58112.1| diaminopimelate epimerase [Vibrio cholerae 2740-80]
 gi|121629442|gb|EAX61871.1| diaminopimelate epimerase [Vibrio cholerae V52]
 gi|124115094|gb|EAY33914.1| diaminopimelate epimerase [Vibrio cholerae 1587]
 gi|124121396|gb|EAY40139.1| diaminopimelate epimerase [Vibrio cholerae MZO-3]
 gi|126510499|gb|EAZ73093.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457]
 gi|146315216|gb|ABQ19755.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|148874509|gb|EDL72644.1| diaminopimelate epimerase [Vibrio cholerae 623-39]
 gi|229342870|gb|EEO07860.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80]
 gi|229346092|gb|EEO11064.1| diaminopimelate epimerase [Vibrio cholerae RC9]
 gi|229347102|gb|EEO12063.1| diaminopimelate epimerase [Vibrio cholerae TMA 21]
 gi|229354032|gb|EEO18965.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|229354677|gb|EEO19599.1| diaminopimelate epimerase [Vibrio cholerae BX 330286]
 gi|229369332|gb|ACQ59755.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236]
 gi|255738404|gb|EET93794.1| diaminopimelate epimerase [Vibrio cholera CIRS 101]
 gi|262024547|gb|EEY43231.1| diaminopimelate epimerase [Vibrio cholerae RC27]
 gi|262031054|gb|EEY49679.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1]
 gi|262033986|gb|EEY52440.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93]
          Length = 276

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274


>gi|238789381|ref|ZP_04633167.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641]
 gi|238722524|gb|EEQ14178.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641]
          Length = 274

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P   +        + +    H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFDPQTVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPELESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 362

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 137/288 (47%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++ ++ F K  G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 74  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +   + SFT  T  G++V +   DG +
Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMG PIL  + +P     +           V      N   VSMGNPH I F +    
Sbjct: 193 KVDMGTPILKAQDVPTKLPGN-KGEAVVQAELVVDGESWNVTCVSMGNPHCITFGKKGGP 251

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +L   G    +H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 252 NLKVDDLNLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWERGAGATLACGTGACA 311

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G 
Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359


>gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
 gi|188020072|gb|EDU58112.1| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
          Length = 278

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 11/285 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M+ +M  F+KM G+GN  +V+D    +   + + I+ L+       FDQ++L+    D  
Sbjct: 1   MERNM-QFSKMHGLGNDFMVVDGVTQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPD 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D   RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V   N +  + 
Sbjct: 60  LDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMVLTINENDDVC 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEP  + + +P      +  +                 VVSMGNPH +  VE  +  
Sbjct: 120 VNMGEPEFEPQKVPF-----RAIKAEKTYIIRALERTVLCGVVSMGNPHCVIQVE-SVKT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            ++   G +L  H  F E  N+    + S   + LR +ERG G T ACGS ACA+V    
Sbjct: 174 AEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACAAVAIGI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
                   V V + GG L I W+     ++MTG A   ++G + +
Sbjct: 234 QQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278


>gi|297581833|ref|ZP_06943754.1| diaminopimelate epimerase [Vibrio cholerae RC385]
 gi|297533927|gb|EFH72767.1| diaminopimelate epimerase [Vibrio cholerae RC385]
          Length = 290

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 18  HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 78  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 137

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I       L     VSMGNPH +  V+ D+    + + 
Sbjct: 138 EFEPNKIPF----RAKQSEKTYILRAGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 191

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 192 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 251

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 252 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288


>gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont]
          Length = 274

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 129/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +      T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +PL     + ++                  VSMGNPH +  VE  +    + +
Sbjct: 121 PNFDPQQVPL-----RANKAENLYLQRVAEQTVMFGAVSMGNPHCVIQVE-SVKTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+    V + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W      +FMTG A   ++G + +
Sbjct: 235 AVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274


>gi|260428165|ref|ZP_05782144.1| diaminopimelate epimerase [Citreicella sp. SE45]
 gi|260422657|gb|EEX15908.1| diaminopimelate epimerase [Citreicella sp. SE45]
          Length = 279

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/289 (34%), Positives = 150/289 (51%), Gaps = 19/289 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F KM G+GN  +V+D R     +T   + A++       FDQ+ LI      + D
Sbjct: 8   SDTLPFMKMHGLGNDFVVLDGRAQTMRLTPSLVRAIADRHRGVGFDQLALIEP---GAGD 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +   N DGS   +CGN  RC+ R+L  +  R   T  T RG L+A++   G  SV+MG
Sbjct: 65  ARLTFYNADGSTAGACGNATRCIARYLMDKTGRDRLTLVTERGALLAEDAGAGLTSVNMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW  IPLAR  D ++                P    MGNPH  FFVE D    DL 
Sbjct: 125 QPQLDWHEIPLAREMDTLEL----------PIDGAPTATGMGNPHCTFFVE-DAEAVDLT 173

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           SFG +   HP++ E  N+ +A +   + + +R WERG GLT A GS++CA+ VA+     
Sbjct: 174 SFGPVHEHHPLYPERTNVQVASIIGPDHIRMRVWERGAGLTLASGSSSCATAVAAARRGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           T R V++++ GG L ++W ++  V+MTG     ++G     +  W++  
Sbjct: 234 TGRKVTIELDGGTLQVDWREDG-VWMTGGTAHVFDGSF---SRAWLEAA 278


>gi|118591329|ref|ZP_01548727.1| diaminopimelate epimerase [Stappia aggregata IAM 12614]
 gi|118436001|gb|EAV42644.1| diaminopimelate epimerase [Stappia aggregata IAM 12614]
          Length = 303

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/296 (41%), Positives = 169/296 (57%), Gaps = 5/296 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M S    F KM G+GN  +V D R     +  +AI AL        FDQ++ +       
Sbjct: 1   MASETRPFLKMNGLGNDFVVWDARENPLRLAPEAIAALGDRETGIGFDQMITVERS-SLG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDGSISV 118
           VDAF+RI N DGSEV +CGN  RC+ R L     +   T ET  G+L A + +   S++V
Sbjct: 60  VDAFMRIHNRDGSEVSACGNATRCIGRLLMEEAGKDLVTIETGAGLLHAFDADGPRSVTV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V+ D+  Y
Sbjct: 120 DMGVPRLAWNEIPLAEEFADTRAIELQIGPIDDPILHTPAVVNMGNPHAIFWVD-DVEAY 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L   G LL  HP+F E  N+S+A V   + + ++ WERGVGLT ACG+AACA  VA+  
Sbjct: 179 ELERVGPLLEHHPIFPEYANISLAHVFDTDQIRVKVWERGVGLTLACGTAACAVGVAAAR 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
             +T+R  ++ + GG + IEW + +NHV M+G  + E+EG++D+ T  W K    D
Sbjct: 239 DGRTSRKTTIHLPGGPIGIEWRESDNHVLMSGLTEVEFEGEVDLDTLAWRKTAAGD 294


>gi|153822333|ref|ZP_01975000.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|153826286|ref|ZP_01978953.1| diaminopimelate epimerase [Vibrio cholerae MZO-2]
 gi|227080362|ref|YP_002808913.1| diaminopimelate epimerase [Vibrio cholerae M66-2]
 gi|254291935|ref|ZP_04962716.1| diaminopimelate epimerase [Vibrio cholerae AM-19226]
 gi|254851510|ref|ZP_05240860.1| diaminopimelate epimerase [Vibrio cholerae MO10]
 gi|298501106|ref|ZP_07010906.1| diaminopimelate epimerase [Vibrio cholerae MAK 757]
 gi|9654526|gb|AAF93303.1| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126520159|gb|EAZ77382.1| diaminopimelate epimerase [Vibrio cholerae B33]
 gi|149739954|gb|EDM54133.1| diaminopimelate epimerase [Vibrio cholerae MZO-2]
 gi|150422145|gb|EDN14111.1| diaminopimelate epimerase [Vibrio cholerae AM-19226]
 gi|227008250|gb|ACP04462.1| diaminopimelate epimerase [Vibrio cholerae M66-2]
 gi|227011872|gb|ACP08082.1| diaminopimelate epimerase [Vibrio cholerae O395]
 gi|254847215|gb|EET25629.1| diaminopimelate epimerase [Vibrio cholerae MO10]
 gi|297540140|gb|EFH76201.1| diaminopimelate epimerase [Vibrio cholerae MAK 757]
          Length = 290

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 18  HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 78  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 137

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 138 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 191

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 192 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 251

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 252 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288


>gi|262163684|ref|ZP_06031425.1| diaminopimelate epimerase [Vibrio mimicus VM223]
 gi|262027900|gb|EEY46564.1| diaminopimelate epimerase [Vibrio mimicus VM223]
          Length = 290

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 18  HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 78  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 137

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I       L     VSMGNPH +  V+ D+    + + 
Sbjct: 138 EFEPSKIPF----RAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVVD-DIRAAAVETL 191

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 192 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 251

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 252 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 288


>gi|229525022|ref|ZP_04414427.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426]
 gi|229338603|gb|EEO03620.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426]
          Length = 276

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 136/277 (49%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             V V + GG L I W   +  ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEIHWQGPSKPLYMTGPATHIYDGQI 274


>gi|325266086|ref|ZP_08132772.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394]
 gi|324982724|gb|EGC18350.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394]
          Length = 283

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + + F+KM G+GN  +VID         +  I A +       FDQ++L+       VD 
Sbjct: 2   TTLKFSKMHGLGNDFMVIDGTRQTFRPDAAQIQAWADRHTGIGFDQLLLVEKTDTPDVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC V+F++      +++   ET RGI+    N +G I+V+M
Sbjct: 62  RYRIFNADGGEVEQCGNGARCFVKFVSEHGLTDKRTIRVETARGIIEPSLNDNGLITVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P    + +P      +   ++     VN L      ++SMGNPHA+  VE D     +
Sbjct: 122 GQPQFAPQDVPFVLRSGEQAGEK-SYIVVNELDSAQMSLLSMGNPHAVMLVE-DTASAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  L  HP F   VN+   +V     + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 180 AEWGAALQNHPRFPARVNVGFMQVVDAHHIRLRVFERGSGETQACGTGACAAVVSGVRWG 239

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                  V V + GG L I W +   V+MTG A   +EG+L
Sbjct: 240 LLAAGEDVRVSLPGGDLYIRWAEGEPVWMTGPAVTVFEGEL 280


>gi|144897540|emb|CAM74404.1| Diaminopimelate epimerase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 280

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/274 (37%), Positives = 150/274 (54%), Gaps = 8/274 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D+R     +T     A++        DQ+++I   +    DA++ 
Sbjct: 8   PFLKMHGLGNDFVVVDVRRSGFVLTPAMARAIADRRTGLGCDQVVVIETARSGLSDAWMS 67

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DGS   +CGN  RCV   L  +        ET  G+L A+   D  ++VDMG   L
Sbjct: 68  LWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAVDMGPARL 127

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPLA+  D +         +    L +P  VSMGNPHA+FFV+ D+   DLA+ G 
Sbjct: 128 DWREIPLAKPVDTL------HMGIGIGSLTDPVGVSMGNPHAVFFVD-DVAAIDLAALGP 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  H +F E  N+ +A+V + + + +R WERG G+T+ACG+ ACA++VA+     T R 
Sbjct: 181 VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             V + GG L IEW  ++HV MTG      EG+L
Sbjct: 241 ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRL 274


>gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
 gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
          Length = 277

 Score =  236 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/275 (35%), Positives = 137/275 (49%), Gaps = 17/275 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R   + +T     AL        FDQ+ +I   +    D  +
Sbjct: 11  LRFLKMHGLGNDFVVIDARSGENPVTPALARALGDRHRGVGFDQLAVILPAE--GADFTL 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS+  +CGN  RCV   +   + +   T  T RG L A+   DG +SV+MG PI
Sbjct: 69  EFWNSDGSKAGACGNATRCVSDLMMRDLGKDRVTLTTARGRLSAERRADGLVSVNMGAPI 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LD   IP+A              P+      +P  V MGNPH +FFVE D    D++  G
Sbjct: 129 LDPAAIPVAAD------------PLALPLTGDPVAVGMGNPHCVFFVE-DAETADVSGLG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  HP+F E  N+  A +   + L +R WERG G+T ACGS  CA+ VA+     T R
Sbjct: 176 PKIEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAHLRGLTGR 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V + GG L I+W ++  V+MTG     +  +L
Sbjct: 236 RVIVDVDGGRLEIDWREDG-VWMTGPTALVFAAEL 269


>gi|15231841|ref|NP_190926.1| diaminopimelate epimerase family protein [Arabidopsis thaliana]
 gi|75263858|sp|Q9LFG2|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
           epimerase; Flags: Precursor
 gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana]
 gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana]
 gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana]
 gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana]
          Length = 362

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 137/288 (47%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++ ++ F K  G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 74  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +   + SFT  T  G++V +   DG +
Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMG PIL  + +P   S +           V      N   VSMGNPH I F +    
Sbjct: 193 KVDMGTPILKAQDVPTKLSGN-KGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 251

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +L   G     H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 252 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 311

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G 
Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359


>gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 279

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 148/279 (53%), Gaps = 8/279 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  ++ID          + AI+  +       DQ++L++  Q A  D  +
Sbjct: 4   INFVKMHGLGNDFILIDCLKNDLPKPQEFAIHYCNRRFGIGADQLLLLYPSQIA--DFKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMGEP 123
           +I N DGSEV+ CGNG+RC  +++  R        E      + K  + G  + VDMG+P
Sbjct: 62  KIFNADGSEVEMCGNGIRCFAKYIWDRGLSNKDVLEVETLAGIIKPKKVGELVQVDMGKP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP+    D        +   +         VSMGNPHA+ F++++  ++ +  +
Sbjct: 122 EFHPNKIPVDVEGDSAFDLMLEVSGWHARIN----CVSMGNPHAVIFLDEEPKNFAVTKY 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  HP+F +  N+  A V +   + +R WERG G T ACG+ ACA+ VA+     TN
Sbjct: 178 GPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAMVKEFTN 237

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           + V+V +LGG LLIEW  + HV+MTG A++ +EG + + 
Sbjct: 238 KKVTVHLLGGDLLIEWAADGHVYMTGPAQEVFEGVVKVP 276


>gi|238760179|ref|ZP_04621326.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236]
 gi|238701615|gb|EEP94185.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236]
          Length = 274

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P            +      H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFDPQTVPFKA---IKAERTYIFRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
 gi|122945419|sp|Q0I572|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
          Length = 274

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNVYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +K     T +G ++ +   D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVVLKGLTDKKEIAVSTAKGKMMLRVKDDDMVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   + +K +++      +  L      VVSMGNPH +  VE D+ H ++  
Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVE-DIQHANIEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW    H ++MTGEA   ++G + +
Sbjct: 235 DNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274


>gi|258622842|ref|ZP_05717859.1| diaminopimelate epimerase [Vibrio mimicus VM573]
 gi|258584903|gb|EEW09635.1| diaminopimelate epimerase [Vibrio mimicus VM573]
          Length = 276

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 274


>gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
 gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
          Length = 278

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I           FDQ++L+    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +    N +  + V+MGE
Sbjct: 65  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +  ++                VVSMGNPH +  VE  +   ++  
Sbjct: 125 PEFEPQKVPF-----RAVKEEKTYIIRAQERTVLCGVVSMGNPHCVVQVE-SVQTAEVEV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+    + S E + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACAAVAVGIGQGLL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           ++ V V + GG L I W      ++MTG A   ++G + I
Sbjct: 239 SKRVRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278


>gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
 gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
          Length = 279

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 6   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPDLDFHY 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G ++     +  + V+MGE
Sbjct: 66  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMILTLKGEEKVRVNMGE 125

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 126 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DIKTAPVNE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 180 LGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 240 DSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDGFIKL 279


>gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H]
 gi|81557036|sp|Q5FQZ4|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H]
          Length = 257

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 100/274 (36%), Positives = 135/274 (49%), Gaps = 22/274 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     + +  I  L         DQ++L+     A  D  +
Sbjct: 3   LSFTKMHGLGNDFVVIDGRQNDPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADVHV 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           R  N DGSE  +CGN  RCV +F+         T +T  G L+         +VDMG P 
Sbjct: 63  RFFNPDGSEAGACGNASRCVAKFVGGA-----PTLQTAAG-LLPTAQDGDLFTVDMGTPR 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ +PL+R+ D +           HL L +    SMGNPHA  F       +   + G
Sbjct: 117 LDWQDVPLSRACDTL-----------HLPLHDAAACSMGNPHATLFG----DAFRAEALG 161

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L + P+F E  N+  A++ S   + LR WERG GLT ACGS ACA+VV +     T R
Sbjct: 162 PGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLTER 221

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +V M GG L I W ++ HVFMTG A   + G 
Sbjct: 222 TCTVTMDGGDLRITWREDGHVFMTGPAVTVFHGT 255


>gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 407

 Score =  236 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 15/293 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           S  +DF K +G+GN  ++ID R      ++S+A   +         D ++      DAS 
Sbjct: 116 SRTIDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASE 175

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D  +R+ N DGSE + CGNG+RC+ RF++    M  K +   T+ G++  +   DG ++V
Sbjct: 176 DYSMRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKKYKVGTLAGLIQPEMRADGQVAV 235

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-------- 170
           DMG PI +   +P   +    D                   VSMGNPH I F        
Sbjct: 236 DMGMPIFEPSEVPTTLAA-TQDGKVVRAEMDVDGEKWLVNAVSMGNPHCITFGRAGGEAD 294

Query: 171 -VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                L  + L+  G     HP F    N    +V +   + +  WERG G T ACG+ A
Sbjct: 295 GPGLKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACGTGA 354

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA+VVA     + +R  +V++ GG L IEW + +  + MTG A+  + GK  +
Sbjct: 355 CATVVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGKYFL 407


>gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1]
 gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1]
          Length = 287

 Score =  236 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      +++      ++        DQ++++   +   VD   
Sbjct: 3   IKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   DG I+VDMG 
Sbjct: 63  RIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           PIL    +P      +   +                  VVSMGNPHA+  VE D     +
Sbjct: 123 PILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVE-DSEAAPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G L+ +H  F + VN    +V     ++LR +ERG G T ACG+ ACA+VVA     
Sbjct: 182 LSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
             +  V+V+  GG L I W      V MTG A   +EG++++ 
Sbjct: 242 LLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELP 284


>gi|33151302|ref|NP_872655.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP]
 gi|71153321|sp|Q7VPN0|DAPF_HAEDU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33147522|gb|AAP95044.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP]
          Length = 274

 Score =  236 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF++ +  + R      T +G +V     + ++ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVSLKGLINRSDMYVSTAKGKMVLTLVDEENVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      L      VVSMGNPH +  V+ D+    +  
Sbjct: 121 PIWEPAKIPF-----IANKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVD-DIEQATVHQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL KH  F E  N+   ++     + LR +ERGVG T ACGS ACA+V         
Sbjct: 175 LGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW      ++MTG A   ++G + +
Sbjct: 235 DANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDGFIKL 274


>gi|149191482|ref|ZP_01869731.1| diaminopimelate epimerase [Vibrio shilonii AK1]
 gi|148834670|gb|EDL51658.1| diaminopimelate epimerase [Vibrio shilonii AK1]
          Length = 276

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPDLIRRLADRHTGVGFDQLLIVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +    + S +  T +G +V K   +  ++V+MG+P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVQMKGLTNKYSVSVSTKKGKMVLKLEENDLVTVNMGQP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH +  V+      D+   
Sbjct: 124 EFEPNKIPFKAK----QKEKTYILRAGEHTLFCG-AVSMGNPHVVTVVD-STEEADVDRL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRHEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V+V + GG L I W    H + MTG A   ++G++
Sbjct: 238 ENVTVHLPGGDLKISWKGEGHPLTMTGPATHVFDGQI 274


>gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
 gi|81655424|sp|Q7NV18|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
          Length = 276

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID      ++T + I  L        FDQ++L+   ++A  D   
Sbjct: 3   LKFSKMHGLGNDFMVIDGVRQTVSLTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  +F+  +    +     ET RG++  +   DG   VDMG 
Sbjct: 63  RIFNNDGGEVEQCGNGARCFAKFVRDQGLTGKSRIEVETARGVIAPEYLGDGLARVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      +P     + +            + +      SMGNPHA+  V+ D+    +A 
Sbjct: 123 PRFRPADLPFLADAEALTYSLPLPEGRCEIGI-----ASMGNPHAVQRVD-DVDAAPVAE 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+VV        
Sbjct: 177 VGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCGIRQGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V   GG ++IEW      V MTG A   ++G++++
Sbjct: 237 DARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276


>gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
 gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
          Length = 278

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 129/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I           FDQ++L+    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +    N +  + V+MGE
Sbjct: 65  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +  ++                VVSMGNPH +  VE  ++  ++  
Sbjct: 125 PDFEPQRVPF-----RAVKEEKTYIIRAQERTVLCGVVSMGNPHCVIQVE-SIHTAEVEV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+    + S + + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACAAVAVGITQGLL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            + V V + GG L I W      ++MTG A   ++G + +
Sbjct: 239 AKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278


>gi|298369275|ref|ZP_06980593.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283278|gb|EFI24765.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 282

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 139/284 (48%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID            ++A S       FDQ++L+       
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDGINQTFEPKEAPLSAWSDRFRGVGFDQLLLVERPSSEL 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV  CGNG RC VRF+T +    +K    ET  G++V +   +G ++
Sbjct: 59  VDFRYRIFNADGGEVGQCGNGARCFVRFVTDKGLTDKKEILVETAGGVIVPRLLENGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP        D D      +  L       V+MGNPHA+  VE D   
Sbjct: 119 VNMGQPRFMPSEIPFVPDSG-EDSDALTHIILVGLESVPVSCVNMGNPHAVIIVE-DTET 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  +G  +  H  F E VN+   ++ +   + LR +ERG G T ACG+ ACA+VVA  
Sbjct: 177 APVGQWGEAIESHEQFPERVNVGFMQIINRREIRLRVYERGTGETQACGTGACAAVVAGV 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +   +V V + GG L I W     V MTG A+  +EG+L
Sbjct: 237 RLGLLDAGESVKVMLPGGDLFISWAPEGGVMMTGPAETVFEGEL 280


>gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|229807483|sp|B3GYL3|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 274

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
          Length = 274

 Score =  236 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|238793578|ref|ZP_04637202.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909]
 gi|238727168|gb|EEQ18698.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909]
          Length = 274

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +P            + +    H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PNFDPQTVPFRA---TKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREQIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274


>gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
 gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
          Length = 280

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 135/281 (48%), Gaps = 6/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +V F KM G+GN  +V+D+      +T   +  L        FDQ++++    +  +D  
Sbjct: 2   LVRFTKMHGLGNDFMVLDLVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV++CGNG RC  +F+  +    +     +T  G +  K + D  + V+MG
Sbjct: 62  YRIFNQDGSEVENCGNGARCFAKFVRDKRLTGKSEVVVQTANGQMTLKIHPDKRVEVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL    +P                      +     +SMGNPH +  V+    +  + 
Sbjct: 122 APILAPVDVPFQADQKATTYAIDVPLSQGDQQVELS-AISMGNPHGVLIVD-STENAPVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  H  F    N+   +V S   ++LR +ERGVG T ACG+ ACA+VVA      
Sbjct: 180 TLGPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVAGKLRGV 239

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V+V + GG L IEWH +   V MTG A   +EG++ +
Sbjct: 240 LDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQIFV 280


>gi|307132971|ref|YP_003884987.1| diaminopimelate epimerase [Dickeya dadantii 3937]
 gi|306530500|gb|ADN00431.1| diaminopimelate epimerase [Dickeya dadantii 3937]
          Length = 274

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +        + +    H  L     VSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPQQVPFRAA---KPEKTYILRAAEHTVLCG--AVSMGNPHCVIQVD-NVDTAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLESHERFPERANVGFMQVVNSGLIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AADVKVQLPGGELEIHWDGPGHPLFMTGPATHVYDGFMHL 274


>gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 274

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1]
 gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1]
          Length = 286

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 8/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + DG ++VDMG+
Sbjct: 63  VIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDMGQ 122

Query: 123 PILDWKLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           P+L+  L+P   +      +   +     +          VSMGNPHA+  V+ D+ H  
Sbjct: 123 PVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAPVSMGNPHAVQLVD-DVDHAP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A++G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA+VVA    
Sbjct: 182 VATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAGIRW 241

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +  V V   GG L IEW D   V MTG A+  +EG++++ 
Sbjct: 242 GLLDARVDVHTRGGRLTIEW-DGGAVRMTGPAEFVFEGQIEVP 283


>gi|255636095|gb|ACU18392.1| unknown [Glycine max]
          Length = 359

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +       A+     +     D ++ +     + 
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPG-ISG 129

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F+    +   R SFT  T  G+++ +   DG++
Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171
            VDMGEPIL    +P     +  D        V    + +   VSMGNPH + F      
Sbjct: 190 RVDMGEPILKASDVPTKLHAN-KDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +  WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229807496|sp|B1I545|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 278

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++  G    D+  + A            D ++L+     A+ D  
Sbjct: 1   MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPS--AAADLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGILVAKENRDGSISV 118
           +R+ N DGSE + CGN +RCV  +        + + +  T   +    +  +    ++ V
Sbjct: 59  MRVFNPDGSEPEMCGNAIRCVALYARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+   IP+      +  +    G  + +       VSMGNPH + F   DL   
Sbjct: 119 DMGRPRLERAEIPMRGPAGPVVGEVLDAGERSFM----VTAVSMGNPHCVVF-GADLDDA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
               +G LL  HP F    N+    V S   + +R WERGVG T ACG+ ACA  VA   
Sbjct: 174 GFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
             +T R V V++ GG LLIEW D+   V+M+G A++ ++GK 
Sbjct: 234 TGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGKW 275


>gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
           Epimerase
          Length = 274

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV   GNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|325982879|ref|YP_004295281.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
 gi|325532398|gb|ADZ27119.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
          Length = 275

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +V+D      N+    I  L+        DQ++L+   +    D   
Sbjct: 3   LKFTKMQGLGNDFVVVDGINQTVNLDRQQIRHLADRHFGIGCDQLLLVEKAE-GQADFRY 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VR++      +      ET+ G++  +   +G+I+V+MG+
Sbjct: 62  RIFNADGGEVEQCGNGARCFVRYVHDHGLTQNSEIRIETLSGVISPRLENNGNITVNMGK 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI + + IP       +                    +SMGNPHA+  V  D+    +A+
Sbjct: 122 PIFEPERIPFIADQCALTYQLELPDSP-----VTICALSMGNPHAVRVV-TDIARAPVAT 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ +H  F   VN+   +V     + LR +ERG G T ACG+ ACA+VVA   L   
Sbjct: 176 EGALIEQHWRFPNKVNVGYLQVIDRNHIKLRVFERGAGETLACGTGACAAVVAGITLGLL 235

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +R V V   GG L I W      V+MTG A   +EG++++
Sbjct: 236 DRQVVVSTQGGELTISWQGYGEPVWMTGPAVTVFEGEINL 275


>gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
 gi|166224260|sp|A5UHQ4|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
          Length = 274

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
           30120]
 gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
           30120]
          Length = 278

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 127/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I           FDQ++L+    D  +D   
Sbjct: 5   LQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +    N +  + V+MGE
Sbjct: 65  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +  +                 VVSMGNPH +  V+ ++   ++  
Sbjct: 125 PDFEPQNVPF-----RAVKAEKTYIIRAQERTVFAGVVSMGNPHCVVQVD-NVQTAEVEV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+    V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 179 LGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAAVAVGVGQGLL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L I W      ++MTG A   ++G + I
Sbjct: 239 ANRVRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278


>gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202]
 gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202]
          Length = 274

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDGVTQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +G + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQIPFTA-----NKFEKNYILRTSLQTVLCGVVSMGNPHCVLQVE-DIKTAPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 235 DSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDGFVTL 274


>gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa]
 gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 139/283 (49%), Gaps = 9/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           + F K  G+GN  +++D R   +  IT +    L         D ++          D  
Sbjct: 1   LHFVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPG-INGTDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC  RF+        K+ SF+  T  G++V +   DG + VD
Sbjct: 60  MRIFNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEP+L    +P   + +K D        V      N   VSMGNPH + F +  +   +
Sbjct: 120 MGEPVLKAADVPTKLAANKNDA-VVKSELVVDGVTWNVTCVSMGNPHCVTFGDLQVDSLN 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA+VVA+   
Sbjct: 179 LAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAAVLE 238

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               R  +V + GG L IEW  ++NHV+MTG A+  ++G + +
Sbjct: 239 GNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281


>gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
 gi|81584626|sp|Q82U84|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
          Length = 275

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 130/280 (46%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      ++    I           FDQ++++    ++  D   
Sbjct: 3   LKFTKMHGLGNDFIVIDAINQSVSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRY 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+      +  T   ET  GI++     +G +SVDMG 
Sbjct: 62  RIFNADGGEVEQCGNGARCFARFVRDHDLTRKNTIRVETACGIIMPTVEENGEVSVDMGI 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   IP                   +        VSMGNPHA+  V  D+    + S
Sbjct: 122 PRFDPARIPF-----ITQERALTYPLNVNDREIEISAVSMGNPHAVQIV-PDIDLAPVTS 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F E VN    ++     + LR +ERG G T ACG+ ACA+VV+       
Sbjct: 176 EGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAVVSGISRGLL 235

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +  V V M GG L I W  ++  V+MTG A   +EG +D+
Sbjct: 236 DSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275


>gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae L20]
 gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|166224236|sp|A3N2H9|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           9 str. CVJ13261]
 gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 274

 Score =  235 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810]
          Length = 274

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +   +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKNDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V +LGG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894]
 gi|166224257|sp|A7MQK2|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894]
          Length = 274

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V   N D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +  L+P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PVFEPSLVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVATAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E  N+   +V + E + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W    N +FMTG A   ++G + +
Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274


>gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
 gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
          Length = 286

 Score =  235 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R     +  + +AI           D ++      D + D  
Sbjct: 1   MEFTKYQGLGNDFILVDNRHNAIPLLSSKEAIKLCDRHFGIGADGVIFALPG-DENTDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF           KS+  +T+ GI++ +   DG + VD
Sbjct: 60  MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEEDGQVKVD 119

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L  K IP  L +  +K+      +G  +     +   VSMGNPH I FV+ ++  
Sbjct: 120 MGNPFLLAKEIPTTLTKGEEKVVNQFLEVGGQS----WSVTCVSMGNPHCITFVD-NVAT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +   H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA  
Sbjct: 175 IPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                +R  +V++ GG L IEW + +N ++MTG A+  + G +
Sbjct: 235 LTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVM 277


>gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
 gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
          Length = 274

 Score =  235 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP   +     +   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS A A+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|261210167|ref|ZP_05924464.1| diaminopimelate epimerase [Vibrio sp. RC341]
 gi|260840707|gb|EEX67256.1| diaminopimelate epimerase [Vibrio sp. RC341]
          Length = 276

 Score =  235 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 92/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  VE D+    + + 
Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVE-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEISWQGPGKPLYMTGPATHIYDGQI 274


>gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
 gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
          Length = 282

 Score =  235 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 132/284 (46%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F KM G+GN  +VID            + +D I  L        FDQ++++   + A 
Sbjct: 3   LRFTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSAD 62

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI+N DGSEV  CGNG RC  RF+  +    ++    ET  G +      D  ++
Sbjct: 63  ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKREIQVETAAGQMTLTVTDDEQVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P      IP+    +           V+         V +GNPH    VE ++ +
Sbjct: 123 VDMGAPRWAPDAIPMTAKAEAD-----SYFLVSGTQAWEVGAVGLGNPHCTLLVE-NVDN 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G LL  H  F E VN+   ++ S   + LR +ERG G T ACGS ACA+VV   
Sbjct: 177 APVESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + AV+V + GG L + +     + MTG A   ++G ++I
Sbjct: 237 RRGWLDAAVTVHLPGGTLQVCYDGQGGIQMTGPASHVYDGAIEI 280


>gi|146313615|ref|YP_001178689.1| diaminopimelate epimerase [Enterobacter sp. 638]
 gi|167012036|sp|A4WG08|DAPF_ENT38 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145320491|gb|ABP62638.1| diaminopimelate epimerase [Enterobacter sp. 638]
          Length = 274

 Score =  235 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 130/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDICVSTANGRMILSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      +  +                 VVSMGNPH +  V+ D+    +  
Sbjct: 121 PNFEPSAVPF-----RAIKAEKTYIMRASEQTVLCGVVSMGNPHCVIQVD-DVDTAAVEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPIMESHERFPERANIGFMQVMKREHIRLRVYERGAGETRACGSGACAAVAVGISQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H +FMTG A   ++G + +
Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLFMTGPAAHVYDGFIHL 274


>gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium]
          Length = 276

 Score =  235 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 137/282 (48%), Gaps = 11/282 (3%)

Query: 5   MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           M+  F KM+GIGN  +V+D       +    I+ L+       FDQ+++I   Q    D 
Sbjct: 1   MIVPFTKMQGIGNDFMVVDAISQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSE   CGNG R V +++  +    ++     T    +      +G I+++M
Sbjct: 61  HFRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRELRLSTNTATMNTVMEDNGLITINM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L+ + IPL        +   ++     +  +    VSMGNPH +  VE D+    +
Sbjct: 121 GKPRLEPEKIPL----RFAQQSETYMIDAEGIRYKIG-AVSMGNPHCVLQVE-DIDKAAV 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G +L+ H  F    N+   +V     + LR +ERGVG T ACG+ ACA+VVA     
Sbjct: 175 GKVGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVAGRLQK 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             +  V V + GG L I W      V+MTG AK  +EG++D+
Sbjct: 235 ILDEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQIDV 276


>gi|83309314|ref|YP_419578.1| diaminopimelate epimerase [Magnetospirillum magneticum AMB-1]
 gi|82944155|dbj|BAE49019.1| Diaminopimelate epimerase [Magnetospirillum magneticum AMB-1]
          Length = 301

 Score =  235 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 102/286 (35%), Positives = 150/286 (52%), Gaps = 13/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +V+D R    ++T + + A+++       DQ++++    D  
Sbjct: 18  MSDRAWPFLKMHGLGNDFVVLDARARALDLTPERVRAIASRGTGVGCDQLVVMTQATDPC 77

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DA + I N DGSEV +CGN  RCV   L   +      F+T  G+L A+      ++VD
Sbjct: 78  ADATMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 137

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   LDW+ IPLA + D +         ++   L +P  VSMGNPHA+FFV+ D    +
Sbjct: 138 MGPARLDWREIPLAEAVDTL------HLGISAGPLADPVGVSMGNPHAVFFVD-DAEAVN 190

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACASVV 234
           LA  G  L  H +F E  N+ +A+V +        + +R WERG G+T ACG+ ACA++V
Sbjct: 191 LAQLGRGLEHHALFPERANIEVAQVLTPPDAEMGRIRMRVWERGAGITMACGTGACATLV 250

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A+     + R   + + GG L IEW  + HV MTG     + G LD
Sbjct: 251 AAARRGLSPRKAEIILDGGTLTIEWLKDGHVLMTGPVAVAFTGTLD 296


>gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 276

 Score =  235 bits (598), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDPHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   + ++  R    +   N         VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA  VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAGAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|261364272|ref|ZP_05977155.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996]
 gi|288567517|gb|EFC89077.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996]
          Length = 283

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 141/284 (49%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +V++      + +T+             FDQ++L+      +
Sbjct: 1   MKT--LKFTKMHGLGNDFMVVNGIAQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDA 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV+ CGNG RC  RF+  +    +K    ET +G+++ K   +G ++
Sbjct: 59  VDFRYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP          D      +  L       V+MGNPHA+  VE D+  
Sbjct: 119 VNMGKPRFTSSEIPFV-PVPDEVEDALTHMVMVGLETVQVSCVNMGNPHAVIVVE-DVQT 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A +G  +  H  F E VN+   ++   ES+ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVAHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVAGV 236

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L        V V + GG L I W     V MTG  +  +EG+L
Sbjct: 237 RLGLLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280


>gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
 gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           2 str. S1536]
          Length = 279

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 6   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 66  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 125

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P   +     +   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 126 PIWEPAQVPFTAN-----KFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|212633302|ref|YP_002309827.1| diaminopimelate epimerase [Shewanella piezotolerans WP3]
 gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3]
          Length = 269

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 10/273 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + D I  L+       FDQ++L+    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG ++V+MG P+L+ 
Sbjct: 61  DGSEVEQCGNGARCFARFVRNKGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPMLEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP         +       +          VSMGNPH +  V+ D+ + D+ + G+ L
Sbjct: 121 SKIPFNAK-----KVEKTYLLMASTGTYLCGAVSMGNPHCVIDVD-DVANTDVDTIGSEL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+VV      K  R V 
Sbjct: 175 TQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKLERNVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           V + GG L+I W      ++MTG A+  ++G++
Sbjct: 235 VDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267


>gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 279

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 6   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 66  RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 125

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 126 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max]
          Length = 359

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +       A+     +     D ++ +     + 
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPG-ISG 129

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F+    +   R SFT  T  G+++ +   DG++
Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171
            VDMGEPIL    +P     +  D        V    + +   VSMGNPH + F      
Sbjct: 190 RVDMGEPILKXXDVPTKLHAN-KDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +  WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|229527132|ref|ZP_04416526.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)]
 gi|229335363|gb|EEO00846.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)]
 gi|327483027|gb|AEA77434.1| Diaminopimelate epimerase [Vibrio cholerae LMA3894-4]
          Length = 276

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVCVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274


>gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
 gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
          Length = 309

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    R+S   + ++G++      +G + VDMG
Sbjct: 83  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDRRSVRVQVMKGLITLTLQDNGEVVVDMG 142

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   S    + + +            R    VSMGNPHA+  V+ D+  Y 
Sbjct: 143 APVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DVEAYP 201

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 261

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 262 GLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLNA 309


>gi|304413631|ref|ZP_07395075.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1]
 gi|304283722|gb|EFL92116.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1]
          Length = 278

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 5   MQFSKMHGLGNDFMVVDNVTQNVYFSPELIRRLANRHTGVGFDQMLVVEPPYDPKLDFHY 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RFL  +    +K     T  G +  +   D  + V+MGE
Sbjct: 65  RIFNADGSEVFQCGNGARCFARFLHLKGLTSKKIIHISTQTGRMSLEITGDEKVCVNMGE 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+   + IP                           VVS+GNPH +  VE D+   ++A 
Sbjct: 125 PVFTPRQIPF-----CATTTEKTYILRTAGHTTLCGVVSIGNPHCVLQVE-DVATANVAL 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F +  N+   ++   ++++LR  ERGVG T ACGS ACA+V         
Sbjct: 179 LGPMLEYHERFPQRTNVGFMQIIDRKNINLRVHERGVGETQACGSGACAAVAIGIEQQLL 238

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           ++ V VK+ GG L I+W    H ++MTG A   ++G + +
Sbjct: 239 DKNVDVKLPGGKLSIQWKGKGHPLYMTGSAVHIYDGYIHL 278


>gi|225075130|ref|ZP_03718329.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens
           NRL30031/H210]
 gi|224953614|gb|EEG34823.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +V++      +  +  +   +       FDQ +++      +
Sbjct: 1   MKT--LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++
Sbjct: 59  VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP        + D      +  L       V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPRFMPSEIPFV-PAHGENEDALTHIVLVGLESVPVSCVNMGNPHAVILVD-DVET 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  +G ++  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVEHWGGVIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V V + GG L I W +   V MTG A+  +EG+L
Sbjct: 237 RNGLLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280


>gi|262404863|ref|ZP_06081417.1| diaminopimelate epimerase [Vibrio sp. RC586]
 gi|262348947|gb|EEY98086.1| diaminopimelate epimerase [Vibrio sp. RC586]
          Length = 276

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHIYDGQI 274


>gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032]
 gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032]
          Length = 274

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V   N D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +  L+P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PVFEPSLVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVATAPVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F E  N+   ++ + E + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V + GG L I W    N +FMTG A   ++G + +
Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274


>gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
 gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
          Length = 279

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  +++D R     +     AI           D ++     ++   D  
Sbjct: 3   IEFTKYHGLGNDFILVDNRASSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GADYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ RF+         + S+   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP        +    +              VSMGNPH I FV  D+    
Sbjct: 122 MGLPRLLAGEIPTTLG--TAETKVINQPLEVAGQTWEVTCVSMGNPHCITFVS-DVAAIP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP F + +N    +V S + + +R WERG G+T ACG+ ACAS+VA    
Sbjct: 179 LEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              +R  +V++ GG L IEW + +  ++MTG A+K + G+L
Sbjct: 239 GNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279


>gi|23015511|ref|ZP_00055285.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 284

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/286 (35%), Positives = 148/286 (51%), Gaps = 13/286 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +V+D R    ++T + + A+++       DQ++++    D+ 
Sbjct: 1   MSERAWPFLKMHGLGNDFVVLDARAHAIDLTPERVRAIASRGTGVGCDQLVVMTQATDSC 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DA + I N DGSEV +CGN  RCV   L   +      F+T  G+L A+      ++VD
Sbjct: 61  ADAQMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   LDW+ IPLA + D +         +    L +P  VSMGNPHA+FFV+ D     
Sbjct: 121 MGPARLDWREIPLAEAMDTL------HLGITAGPLSDPVGVSMGNPHAVFFVD-DAEAVP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACASVV 234
           LA  G  L  H +F E  N+ +A+V       +  + +R WER  G+T ACG+ ACA++V
Sbjct: 174 LAQLGRGLEHHALFPERANIEVAQVLSPPDADMGRIRMRVWERSAGITMACGTGACATLV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           A+     + R   + + GG L IEW  + HV MTG     + G LD
Sbjct: 234 AAARRGLSPRKAEIILDGGSLTIEWLKDGHVLMTGPVAVAFTGVLD 279


>gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa]
 gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa]
          Length = 314

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 14/291 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           S  + F K  G+GN  +V+D R   +       A+     +     D ++      +   
Sbjct: 26  SRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVKLCDRNFGIGADGVIFALPGVN-GT 84

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSI 116
           D  +RI N DGSE + CGNG+RC  RF+        KR+SFT  T  G++V +   DG +
Sbjct: 85  DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGKRQSFTVHTGAGLIVPEIQEDGQV 144

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171
            VDMGEP+L    +P   + +K D        V      N   VSMGNPH + F      
Sbjct: 145 KVDMGEPVLKAANVPTKLASNKNDA-VVKSELVVDGVTWNVTCVSMGNPHCVTFGTKGGE 203

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +  +   +LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 204 DLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSHLKMRVWERGAGATLACGTGACA 263

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 264 TVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEVVFYGSVRL 314


>gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42]
 gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42]
          Length = 315

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+++     A +D   
Sbjct: 26  IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILIVRPSPGAGIDFEY 85

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG +V+ CGNG RC  R++  +    + +   +T+ G++      DG ++VDMG 
Sbjct: 86  VIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVDMGR 145

Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P L+   +P         S     +    +            VVSMGNPHA+  V+ D+ 
Sbjct: 146 PELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGNPHAVQLVD-DVD 204

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 205 TAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAAVVAG 264

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
             L   +  V V   GG L I+W     + VFMTG A   +EG++DI 
Sbjct: 265 IRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 312


>gi|329117998|ref|ZP_08246711.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465886|gb|EGF12158.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 287

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62
           +++ F KM G+GN   VID      +  +  I A         FDQ++L+        D 
Sbjct: 2   AVLKFTKMHGLGNDFAVIDGISQPFDPAAAPIAAWADRHTGIGFDQLLLVEQPVSPEADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DG EV+ CGNG RC  RF+  +    ++    ET RGI+V K    G ++VDM
Sbjct: 62  RYRIFNADGGEVEQCGNGARCFARFVADKGLTDKREIVVETARGIIVPKLEEGGLVTVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L    IP     +    D        +    +  +V+MGNPHA+  V+ D     +
Sbjct: 122 GKPRLRPSEIPF-LPAEGAAEDALRHDIAANGAAVSVGLVNMGNPHAVLTVD-DTDAAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  L  HP F E  N+   +V     + LR +ERGVG T ACG+ ACA+VV    L 
Sbjct: 180 ATLGAALETHPQFPEKANIGFMQVLDPHRIRLRVFERGVGETQACGTGACAAVVHGVRLG 239

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                  V V + GG L I W +   V MTG A+  ++G +
Sbjct: 240 LLAAGEPVEVSLPGGRLRISWREGGSVMMTGPAQTVFDGVI 280


>gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis]
 gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis]
          Length = 369

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 142/291 (48%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S +  F K +G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 81  ESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTN-G 139

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +   ++SFT  T  G++V +   DG +
Sbjct: 140 TDYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKV 199

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    +P  R  +                  N   VSMGNPH + F  ++  
Sbjct: 200 KVDMGEPILKASDVP-TRLRENKGDAVVKAKLNIDGVTWNVTCVSMGNPHCVTFGSNENQ 258

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 259 DLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKMRVWERGAGATLACGTGACA 318

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +VVA+    +  R  +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 319 TVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPAEAVFYGAVAL 369


>gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
          Length = 279

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 6   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 66  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 125

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P   +     +   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 126 PIWEPAQVPFTAN-----KFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|119503713|ref|ZP_01625795.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080]
 gi|119460221|gb|EAW41314.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080]
          Length = 279

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  +VID    + ++++  I  L+        DQ++++        D   
Sbjct: 3   VRFTKMHGAGNDFVVIDNVRQNLDLSASQIRRLANRQRGIGCDQVLIVGPPDSPDADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGNG RC  RF+  +    +     +   G++      DG I  +MG 
Sbjct: 63  HIFNADGSEAGQCGNGARCFARFVREQRLSLKPKLRVQAPNGLMQLDTANDGRILAEMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI     +P        D+++               V+SMGNPHA+  VE ++    +AS
Sbjct: 123 PIFTPSAVPF-----DTDKEQLEYTLTVSDTSLAMGVLSMGNPHAVIIVE-NVQTAPVAS 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F++ VN+   ++ S + + LR +ERG G T ACG+ ACA+VV     +  
Sbjct: 177 LGETIEGHPKFTDRVNVGFMQILSRDEIKLRVFERGAGETLACGTGACAAVVHGIRKNLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N AV+V + GG L I W  N    +++G     +EG +++
Sbjct: 237 NNAVTVHLPGGKLSITWEGNGTAAWLSGPTASVFEGTINL 276


>gi|258625071|ref|ZP_05719990.1| diaminopimelate epimerase [Vibrio mimicus VM603]
 gi|258582622|gb|EEW07452.1| diaminopimelate epimerase [Vibrio mimicus VM603]
          Length = 276

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I       L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S E ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G++
Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHAYDGQI 274


>gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801]
 gi|226724207|sp|B7K1E7|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801]
          Length = 281

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F+K +G+GN  ++ID R  H  +     AI           D ++ +     A+ D  
Sbjct: 3   IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF+          K++  +T+ G++  +    G + VD
Sbjct: 62  MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  K IP        +    +              VSMGNPH I FV+ D++  D
Sbjct: 122 MGTPYLLAKEIPTTLG--NSNDKVINHSLEVAGQTWLVTCVSMGNPHCITFVK-DVWGID 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G     HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           ++ +R   V++ GG L IEW + +N ++MTG A+  + G  ++
Sbjct: 239 NQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTGIYNL 281


>gi|261379692|ref|ZP_05984265.1| diaminopimelate epimerase [Neisseria subflava NJ9703]
 gi|284797356|gb|EFC52703.1| diaminopimelate epimerase [Neisseria subflava NJ9703]
          Length = 283

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +V++      +  +  +   +       FDQ +++      +
Sbjct: 1   MKT--LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++
Sbjct: 59  VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETTKGIIVPKLLDNGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP        + D      +  L       V+MGNPHA+  V+ ++  
Sbjct: 119 VNMGKPRFMPSEIPFV-PAHGENEDALTHIVLVGLESVPVSCVNMGNPHAVILVD-NVET 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  +G  +  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVEHWGGAIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V V + GG L I W +   V MTG A+  +EG+L
Sbjct: 237 RNGLLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280


>gi|328541782|ref|YP_004301891.1| diaminopimelate epimerase [polymorphum gilvum SL003B-26A1]
 gi|326411534|gb|ADZ68597.1| Diaminopimelate epimerase [Polymorphum gilvum SL003B-26A1]
          Length = 304

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/295 (41%), Positives = 167/295 (56%), Gaps = 5/295 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M S+   F KM G+GN  +V D R    +++ + I AL        FDQ++ +     A 
Sbjct: 1   MASARRPFLKMNGLGNDFVVWDARAEALSLSPETIAALGNRSTGIGFDQMITVECSP-AG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-RDGSISV 118
            DAF+RI NCDGS+V +CGN  RCV R L     R     ET  G+LVA+       ++V
Sbjct: 60  ADAFMRIHNCDGSQVSACGNATRCVGRLLMEESGRPDANIETRAGLLVARATGDPRVVTV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L W  IPLA  F         IGP++   L  P VV+MGNPHAIF+V  D+  Y
Sbjct: 120 DMGVPRLRWDEIPLAEEFADTRAIELQIGPIDAPILHTPAVVNMGNPHAIFWVG-DVEAY 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G LL +HP+F EG N+S+A V + + + ++ WERG GLT ACG+AACA  VA+  
Sbjct: 179 DLGRIGPLLERHPIFPEGANISLAHVFAPDQIRVKVWERGAGLTRACGTAACAVAVAAAR 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
             +  R  +V + GG L IEW + + HV MTG  + E+EG++D+ T  W +    
Sbjct: 239 DGRAGRRSTVHLPGGPLTIEWREGDGHVLMTGATEVEFEGEIDLDTLAWERTGPG 293


>gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
 gi|254767102|sp|B9MFT0|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
          Length = 292

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 137/288 (47%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +     A +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG +V+ CGNG RC  R++  +    + +   +T+ G++      DG ++VDMG 
Sbjct: 63  VIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVDMGR 122

Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P L+   +P         S     +    +            VVSMGNPHA+  V+ D+ 
Sbjct: 123 PELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGNPHAVQLVD-DVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F + VN    ++ +   + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 182 TAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
             L   +  V V   GG L I+W     + VFMTG A   +EG++DI 
Sbjct: 242 IRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 289


>gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
 gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
          Length = 281

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 11/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F+K +G+GN  ++ID R  H  +     AI           D ++ +     A+ D  
Sbjct: 3   IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF+          K++  +T+ G++  +    G + VD
Sbjct: 62  MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  K IP        +    +              VSMGNPH I FV+ D++  D
Sbjct: 122 MGTPYLLAKEIPTTLG--NSNDKVINHSLEVAGQTWLVTCVSMGNPHCITFVK-DVWGID 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G     HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           ++ +R   V++ GG L IEW + NN ++MTG A+  + G  ++
Sbjct: 239 NQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTGIYNL 281


>gi|254226602|ref|ZP_04920183.1| diaminopimelate epimerase [Vibrio cholerae V51]
 gi|125620874|gb|EAZ49227.1| diaminopimelate epimerase [Vibrio cholerae V51]
          Length = 285

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 10/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     +T    T +G +V     +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH +  V+ D+    + + 
Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
             V V + GG L I W      ++MTG A   ++G
Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDG 272


>gi|260774851|ref|ZP_05883753.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609276|gb|EEX35431.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 276

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     D  ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILSIEEDDQVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I       L     VSMGNPH +  V+ D    D+ + 
Sbjct: 124 EFEPNKIPFKAK----QTEKTYILRAEEKTLFCG-AVSMGNPHVVTVVD-DTQTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRNEVNLRVYERGAGETQACGSGACGAVAVGIVQELLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V+V + GG L I W      ++MTG A   ++G+L
Sbjct: 238 EKVTVNLPGGSLKISWQGPGKPLYMTGPATHVFDGQL 274


>gi|218767882|ref|YP_002342394.1| diaminopimelate epimerase [Neisseria meningitidis Z2491]
 gi|21362492|sp|Q9JV69|DAPF_NEIMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121051890|emb|CAM08196.1| putative diaminopimelate epimerase [Neisseria meningitidis Z2491]
 gi|319410129|emb|CBY90465.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis
           WUE 2594]
          Length = 283

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAQV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|329847627|ref|ZP_08262655.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19]
 gi|328842690|gb|EGF92259.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19]
          Length = 270

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 108/274 (39%), Positives = 158/274 (57%), Gaps = 9/274 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D R        D I A S       FDQ++ I D +D   DAF+R+ N 
Sbjct: 1   MNGLGNDFIVVDARETAFQPAPDQIRAWSNRVSGIGFDQLIAIEDSRDG--DAFMRVWNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----DGSISVDMGEPIL 125
           DG  V++CGN +RCV  +L      K+   +T+ G   A+  R     G+ S+DMG+P L
Sbjct: 59  DGGGVETCGNALRCVAWYLNRDASDKTLKIDTLGGATKARVLRADATTGTASIDMGKPGL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPL+   +    +   +GP +      P  VSMGNPH +FFV+ D+   D+ + G+
Sbjct: 119 DWRDIPLSEEMNTAKLE-LKVGPYDAPLYHTPVAVSMGNPHCVFFVD-DIATVDVKATGS 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F E VN+  A++   +++ +R WERG G+T ACG+ ACA++VA+     T RA
Sbjct: 177 LIEHHPLFPESVNVEFAQILDKDTIRMRVWERGAGITQACGTGACATLVAAARRGLTGRA 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +V M GG L I W +N+HV MTG  + E+EG L
Sbjct: 237 ATVHMDGGPLHIVWAENDHVIMTGPVEVEFEGTL 270


>gi|255065307|ref|ZP_05317162.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256]
 gi|255050728|gb|EET46192.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256]
          Length = 283

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 145/284 (51%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +V++  G   + +T+             FDQ++L+      +
Sbjct: 1   MKT--LKFTKMHGLGNDFMVVNGIGQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDA 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV+ CGNG RC  RF+  +    +K    ET +G+++ K   +G ++
Sbjct: 59  VDFRYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP     D+ D D      +  L       V+MGNPHA+  VE D+  
Sbjct: 119 VNMGKPRFTSSEIPFVPVPDEAD-DALTHMVMVGLETVQVSCVNMGNPHAVIVVE-DVQT 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A +G  +  H  F E VN+   ++   ES+ LR +ERGVG T ACG+ ACA+VV+  
Sbjct: 177 APVAHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVSGV 236

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L        V V + GG L I W     V MTG  +  +EG+L
Sbjct: 237 RLGLLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280


>gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
 gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
          Length = 274

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTA-----NKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQIANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V +LGG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|237747588|ref|ZP_04578068.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13]
 gi|229378950|gb|EEO29041.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13]
          Length = 287

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V++      N+T +    L+        DQI+L+    +  VD   
Sbjct: 3   LKFTKMHGAGNDFIVLNAIDQVINLTREQYRFLADRRYGIGADQILLVEKPDNPEVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R   +F+T     ++     ET  GI+     +DGS++VDMG 
Sbjct: 63  RIFNSDGGEVEQCGNGARAFAKFVTESGLSRQNPIKVETRVGIIELHLEKDGSVTVDMGN 122

Query: 123 PILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P+ +   IP       +            +            VVSMGNPHA+  V+ D+ 
Sbjct: 123 PVFETSRIPFLTKGLTSDEIGSDTIWNLILDTGGIKKSIPISVVSMGNPHAVQIVD-DVN 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  H  F E VN     +    S+ LR +ERG   T ACG+ ACA+VV+ 
Sbjct: 182 RAAVAEEGPLIENHERFPERVNAGFMEIQDRHSIKLRVYERGAAETLACGTGACAAVVSG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 +  V+VK  GG L I W    H V M+G A   + G++++
Sbjct: 242 IRRKLLDSPVTVKARGGELKIAWEGEGHNVIMSGPAIIVFNGEINL 287


>gi|254515503|ref|ZP_05127563.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3]
 gi|219675225|gb|EED31591.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3]
          Length = 276

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 126/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  ++ID       +    I  ++        DQ++L+      S D   
Sbjct: 3   VKFTKMHGAGNDFVMIDTISQRIKLKPRDIRKIADRRRGIGCDQVLLVEPPGQPSADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGNG RC  RF         +    E    ++      +  + VDMG 
Sbjct: 63  RIFNADGSEAGQCGNGARCFARFVRHRRLTHLQKMVVEAGNSLMTLTIRDNHDVEVDMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IPL R  + ++ D    G    +       VSMGNPHAI  V+  + +  L  
Sbjct: 123 PNFAPNDIPLRRDQEALEYDLVAAGEQLRIG-----AVSMGNPHAILRVDA-VDNGSLER 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F EG N     +   +++ LR +ERGVG T ACGS ACA+VV    +   
Sbjct: 177 LGEAIRSHSDFPEGSNAGFLEIVDRQNVRLRVFERGVGETQACGSGACAAVVYGRRMGWL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V++ GG L I W  +N  V MTG     +EG + +
Sbjct: 237 DDQVTVELTGGKLSIHWQGDNSPVLMTGPTAISFEGTIRL 276


>gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
 gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
          Length = 279

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R           A+           D ++     Q+   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRSSLTPVITPQQAVKWCDRHFGIGADGVIFALPGQN-DTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  FLT        +  +   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTKDYYRIHTLAGVITPQLTHDGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  + IP    F   D    ++         +   VSMGNPH I F+E D+    
Sbjct: 122 MGLPRLLAQEIPTT--FAPADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIE-DVAAIP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP F + +NL    + +   L +R WERG G+T ACG+ ACA +VA    
Sbjct: 179 LEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAGVLN 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            K +R  ++++ GG L IEW + +  ++MTG A++ + GK 
Sbjct: 239 DKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGKF 279


>gi|316983746|gb|EFV62727.1| diaminopimelate epimerase [Neisseria meningitidis H44/76]
 gi|325200553|gb|ADY96008.1| diaminopimelate epimerase [Neisseria meningitidis H44/76]
 gi|325203848|gb|ADY99301.1| diaminopimelate epimerase [Neisseria meningitidis M01-240355]
 gi|325206397|gb|ADZ01850.1| diaminopimelate epimerase [Neisseria meningitidis M04-240196]
          Length = 283

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 279

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 6   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MG 
Sbjct: 66  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGG 125

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P   +     +   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 126 PIWEPAQVPFTAN-----KFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279


>gi|255645761|gb|ACU23373.1| unknown [Glycine max]
          Length = 359

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +  I+++ A+     +     D ++ +       
Sbjct: 71  ESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPG-ING 129

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N D SE + CGNG+RC  +F+    +   R SFT  T  G+++ +   DG++
Sbjct: 130 TDYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171
            VDMGEP+L    +P     +  D        V    + +   VSMGNPH + F      
Sbjct: 190 RVDMGEPVLKALDVPTKLPAN-KDNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    LA  G     H +F    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 308

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           +V A+    +  R  +V + GG L IEW  ++NHV+MTG A   + G L +
Sbjct: 309 TVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359


>gi|325144201|gb|EGC66508.1| diaminopimelate epimerase [Neisseria meningitidis M01-240013]
          Length = 301

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 20  NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 80  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 140 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQIISRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 298


>gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336]
 gi|189082834|sp|B0UWU6|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336]
          Length = 274

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +    ++ I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNIYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    +K     T +G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVVLKGLTNKKEIAVSTAKGKMMLCVKDDDMVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +      VVSMGNPH +  VE D+ H ++  
Sbjct: 121 PIWEPNKIPFNA-----NKFEKNYIIRTDIQTLLCGVVSMGNPHCVTQVE-DIQHANIEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L+IEW    H ++MTGEA   ++G + +
Sbjct: 235 GSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274


>gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576129|sp|Q3AC09|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 274

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +V+D        + N++  A            D ++L+   + A  D
Sbjct: 1   MEFLKMHGLGNDFVVVDEIKNQNLVNKNLSDLAKKICDRRFGIGADGLVLLLPSEKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
             +RIIN DGSE + CGN +RCV R+   +     K    ET+ GI+  +   +  + VD
Sbjct: 59  FKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQLEVETLAGIIKPEVLENNMVRVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PIL  + IP+A   + ++     +G   +        VSMGNPHA+ FV+  L   +
Sbjct: 119 MGRPILKPQEIPVAVEEEPVNIPLEVLGQKFY-----FTAVSMGNPHAVIFVD-SLAKIE 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L  +G L+  HP+F    N+    + S   + +  WERG G T ACG+ A A VVA   L
Sbjct: 173 LEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRIL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 V V + GG L I W     V+MTG A+  ++G+  +
Sbjct: 233 GHLQEDVEVVLPGGSLFINWVFGESVYMTGPAEIVFKGEYFL 274


>gi|254804641|ref|YP_003082862.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14]
 gi|254668183|emb|CBA04889.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14]
          Length = 283

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGN HA+  V+ D+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNSHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
 gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
          Length = 282

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 11/286 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDA 58
           M    ++F K  G+GN  ++ID R      IT + A+           D ++     ++ 
Sbjct: 1   MGKMAIEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN- 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDG 114
             D  +RI N DGSE + CGNG+RC+  FL         + ++   T+ G++  +   DG
Sbjct: 60  GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDG 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I VDMG P L    IP   +    D+   +              VSMGNPH I FVE D
Sbjct: 120 QIKVDMGLPRLLAGEIPT--NIAAADQKVINQPLEVEGKTWEVTCVSMGNPHCITFVE-D 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L + G     HP F +  N    +V S + L +R WERG G+T ACG+ ACAS+V
Sbjct: 177 VAAIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLV 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A+    +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 237 AAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282


>gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
 gi|189082835|sp|B0JJ58|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
          Length = 281

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 144/285 (50%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  ++ID R   + + +   A+           D ++     Q A  D  
Sbjct: 3   IPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQ-AETDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+     +    +++   T+ G ++ +   +  ++VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L +  +K+      +   + L       VSMGNPH + FV  DL  
Sbjct: 122 MGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWL----VTCVSMGNPHCVTFVG-DLAS 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G     HP+F +  N+    V + + + +R WERG G+T ACG+ ACA VVA+ 
Sbjct: 177 IPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAAL 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              K +R  +V++ GG L I W   +N V+MTG AK  +EG   I
Sbjct: 237 LTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI 281


>gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
 gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           4 str. M62]
          Length = 274

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T D I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++M G+A   ++G + +
Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDGFIKL 274


>gi|121634557|ref|YP_974802.1| diaminopimelate epimerase [Neisseria meningitidis FAM18]
 gi|120866263|emb|CAM10004.1| putative diaminopimelate epimerase [Neisseria meningitidis FAM18]
 gi|308388948|gb|ADO31268.1| putative diaminopimelate epimerase [Neisseria meningitidis
           alpha710]
 gi|325132004|gb|EGC54703.1| diaminopimelate epimerase [Neisseria meningitidis M6190]
 gi|325137835|gb|EGC60410.1| diaminopimelate epimerase [Neisseria meningitidis ES14902]
          Length = 283

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPRFMPSEIPFVPELGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
 gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
          Length = 302

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       + +     L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGQLGLNTAQYRWLADRHFGVGADQILSVRPSPAPGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
            I N DG+EV+ CGNG RC  RF+  R   +  +   +T+ G++  +   DG ++VDMG 
Sbjct: 63  VIHNADGAEVEQCGNGARCFARFVHDRGLSEKPSIRVQTLGGVIEPRITLDGRVTVDMGA 122

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVS-----MGNPHAIFFVEDDLY 176
           PI D   +P  A     +D+   H          +   V+     MGNPHA+  V  D+ 
Sbjct: 123 PIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIV-ADVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G  + +H  F   VN    +V + + + LR WERG G T ACG+ ACA+VVA 
Sbjct: 182 AAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
             L      V V   GG L IEW +   V MTG A   + G++D+  
Sbjct: 242 IRLGLLEARVDVHTRGGVLTIEWSEGRPVLMTGPATTVFHGEIDVPE 288


>gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
 gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
          Length = 279

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 134/282 (47%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  + ++       ++I S AI           D ++LI   + A  DA 
Sbjct: 1   MKFTKMHGAGNDYVYVNCFEETLPEDIASLAIAVSDRHTGIGSDGLILICPSEKA--DAQ 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN------RDGSIS 117
           +R+ N DGSE + CGNG+RCV +++         T +   G  V   +      +   + 
Sbjct: 59  MRMFNADGSESEMCGNGVRCVAKYVYDHGISNQQTLKIETGAGVLSLDLELAGSKVSQVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL    IP     D        +G            VSMGNPH I FV+ ++  
Sbjct: 119 VNMGKPILTSAEIPTLLPGDPPVNAPLEVGAQ----TLEVTCVSMGNPHCITFVD-EVND 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  +  HPMF   VN     V S   L +R WERG G T ACG+ ACAS VA  
Sbjct: 174 HWVHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGACASAVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              ++ R V + + GG L +EW DN+ VFMTG A + ++G  
Sbjct: 234 LTGRSERNVLIHLPGGDLRLEWADNDEVFMTGPAVEVYQGIW 275


>gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As]
          Length = 287

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 7/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  +V+D       +++  +  L+        DQI+L+       VD   
Sbjct: 3   VAFTKMHGAGNDFVVLDATRAPLALSAAQLRLLADRHFGVGADQILLVEAAPSPEVDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V ++  +    ++    +T+ G++  +   DG ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDMGA 122

Query: 123 PILDWKLIPLARS-FDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D   +P           D +   P++ +       V+SMGNPHA+  V+ D+    +
Sbjct: 123 PVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQRVD-DVDTAPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            S G L+  HP F   VN    ++   + + LR WERG G T ACG+ ACA+VVA     
Sbjct: 182 LSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLRHG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
               AV V+  GG L I W      V MTG A   ++G +D+ 
Sbjct: 242 WLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDLP 284


>gi|325129925|gb|EGC52726.1| diaminopimelate epimerase [Neisseria meningitidis OX99.30304]
 gi|325136015|gb|EGC58625.1| diaminopimelate epimerase [Neisseria meningitidis M0579]
 gi|325202442|gb|ADY97896.1| diaminopimelate epimerase [Neisseria meningitidis M01-240149]
 gi|325207806|gb|ADZ03258.1| diaminopimelate epimerase [Neisseria meningitidis NZ-05/33]
          Length = 283

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 144/281 (51%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
 gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
 gi|254767106|sp|B8F878|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
 gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
          Length = 274

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I   +       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +           T +G +V     DG + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +      VVSMGNPH +  VE ++   ++  
Sbjct: 121 PIWEPAQIPFTA-----NKFEKNYILRTDIQTVLCGVVSMGNPHCVLQVE-NIQTANVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           +  V V + GG L IEW    + ++MTG+A+  ++G + 
Sbjct: 235 DSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDGAVK 273


>gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
 gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
          Length = 309

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 83  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDMG 142

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   +    + + +            R    VSMGNPHA+  V+ D+  Y 
Sbjct: 143 APVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DVEAYP 201

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 261

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 262 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA 309


>gi|325142033|gb|EGC64465.1| diaminopimelate epimerase [Neisseria meningitidis 961-5945]
 gi|325197981|gb|ADY93437.1| diaminopimelate epimerase [Neisseria meningitidis G2136]
          Length = 283

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|319637644|ref|ZP_07992410.1| diaminopimelate epimerase [Neisseria mucosa C102]
 gi|317400799|gb|EFV81454.1| diaminopimelate epimerase [Neisseria mucosa C102]
          Length = 283

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 141/284 (49%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +V++      +  +  +   +       FDQ +++      +
Sbjct: 1   MKT--LKFTKMHGLGNDFMVVNAIEQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++
Sbjct: 59  VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP   +  + + D      +  L       V+MGNPHA+  V+ ++  
Sbjct: 119 VNMGKPRFMPSEIPFVPAHGETE-DALTHIVLVGLESVPVSCVNMGNPHAVILVD-NVET 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  +G+ +  H  F E VN+   ++    S+ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVDHWGSAIESHEQFPERVNVGFMQIEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V V + GG L I W +   V MTG A+  +EG+L
Sbjct: 237 RNGLLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280


>gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
 gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
          Length = 309

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 83  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQDNGEVVVDMG 142

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   +     ++              R    VSMGNPHA+  V+ D+  Y 
Sbjct: 143 APVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DVEAYP 201

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 261

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 262 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA 309


>gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From
           Arabidopsis Thaliana In Complex With Ll-Azidap
 gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
 gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form
           Arabidopsis Thaliana In Complex With Irreversible
           Inhibitor Dl-Azidap
          Length = 317

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 137/288 (47%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++ ++ F K  G+GN  +++D R   +  IT +    L         D ++      +  
Sbjct: 23  ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 81

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +   + SFT  T  G++V +   DG +
Sbjct: 82  TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 141

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173
            VDMG PIL  + +P   S +           V      N   VSMGNPH I F +    
Sbjct: 142 KVDMGTPILKAQDVPTKLSGN-KGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 200

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +L   G     H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 201 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 260

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G 
Sbjct: 261 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 308


>gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
 gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
          Length = 277

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 10/282 (3%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM+ +GN  +VID       ++SD I  LS        DQ++L    Q    D 
Sbjct: 2   TKLRFTKMQALGNDFIVIDAMSQTVALSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDI 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDM 120
             R+ N DG EV+ CGNG+RC+ RFL  +   +      ET  G+ +     DG+I+V+M
Sbjct: 62  RYRVFNADGGEVEHCGNGVRCLARFLHEKALLEQHELRVETRNGLTLVHLCDDGAIAVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+L+ + IP   +    +           +       VSMGNPHA+  V+ D+    +
Sbjct: 122 GPPVLEPERIPFRPTKQASEYALALEDKRIMIG-----AVSMGNPHAVLQVD-DIDSAPI 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +FG L+ +H  F + VN+   +V S + + LR +ERG G T ACG+ ACA+VV+     
Sbjct: 176 DTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAVVSGRLRG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
             +  V V + GG L+I W   +  V+MTG A   +EG++ +
Sbjct: 236 LLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277


>gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|229807484|sp|B0BRC5|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 274

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  +T + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    ++     T +G +V     +  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   +P        ++   +      L      VVSMGNPH +  VE D+    +  
Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   +V +   + LR +ERG G T ACGS AC +V         
Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 235 DNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274


>gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
 gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
          Length = 276

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 130/281 (46%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G GN  +V+D+      +    I  L+        DQ++++       VD  
Sbjct: 2   LLKFTKMHGAGNDFIVVDLISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+       ++  + ET  GI+  +   +  + VDMG
Sbjct: 62  YRIFNADGGEVEQCGNGARCFARFVRDNKLTSKRIISVETACGIIQLRLRDNNQVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+ + IP          +           +     +SMGNPH++  V+ D+   ++ 
Sbjct: 122 APILEPQKIPFDAP-----EEATSYPLQVEENVLEIGALSMGNPHSVCRVD-DVDSINIE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  HP F +  N    ++ S   + LR +ERGVG T ACG+ ACA+VV       
Sbjct: 176 HLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVYGLSRGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V+V + GG L I W      V MTG     +EG + I
Sbjct: 236 LRDTVTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTIRI 276


>gi|198284450|ref|YP_002220771.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198248971|gb|ACH84564.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 297

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 126/282 (44%), Gaps = 10/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +V D      ++  + +  ++        DQI+L+        D   
Sbjct: 13  LRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDFRY 72

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+EV  CGNG RC            +   T ET  G L+     +G+I+V MG 
Sbjct: 73  RIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHMGV 132

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    +P      + D +                 V MGNPHA+  V        +A+
Sbjct: 133 PRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVASAAE-APVAT 186

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F E  N+    +     + LR WERG G T ACGS ACA+VVA     + 
Sbjct: 187 LGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWDEL 246

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           + AV+V + GG L IEW    H V MTG A+  ++G   +  
Sbjct: 247 DHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 288


>gi|261378786|ref|ZP_05983359.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685]
 gi|269144763|gb|EEZ71181.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685]
          Length = 283

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFIPEHAPIAAWADRFRGIGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +    +K    ET +GI+  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP     D+ D D    G      ++    V++GNPHA+  V+ D+    +
Sbjct: 122 GKPKFMPSEIPFVPVSDEGD-DACIYGVHLESGIQPVSCVNIGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|218666260|ref|YP_002427117.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518473|gb|ACK79059.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 288

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 126/282 (44%), Gaps = 10/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +V D      ++  + +  ++        DQI+L+        D   
Sbjct: 4   LRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+EV  CGNG RC            +   T ET  G L+     +G+I+V MG 
Sbjct: 64  RIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHMGV 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    +P      + D +                 V MGNPHA+  V        +A+
Sbjct: 124 PRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVASAAE-APVAT 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F E  N+    +     + LR WERG G T ACGS ACA+VVA     + 
Sbjct: 178 LGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWDEL 237

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           + AV+V + GG L IEW    H V MTG A+  ++G   +  
Sbjct: 238 DHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 279


>gi|161869705|ref|YP_001598872.1| diaminopimelate epimerase [Neisseria meningitidis 053442]
 gi|161595258|gb|ABX72918.1| diaminopimelate epimerase [Neisseria meningitidis 053442]
 gi|325127855|gb|EGC50761.1| diaminopimelate epimerase [Neisseria meningitidis N1568]
 gi|325133725|gb|EGC56381.1| diaminopimelate epimerase [Neisseria meningitidis M13399]
          Length = 283

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|304387930|ref|ZP_07370103.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091]
 gi|304338027|gb|EFM04164.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091]
          Length = 301

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 20  NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 80  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVRMTGPAETVFEGEL 298


>gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
 gi|81598729|sp|Q5P2V2|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
          Length = 277

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 131/281 (46%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      ++T + +  L+        DQ++++ +     VD   
Sbjct: 3   LRFTKMHGLGNDFVVIDAIRQSVDLTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET  GI+  +   DG ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHEQGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+L+   +P     D                      VSMGNPHA+  V D       A 
Sbjct: 123 PVLEPARVPFVSDSDA-----IVQPLDVGGETVAITAVSMGNPHAVQVVADVDAAPVAAQ 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+ +HP F   VN    +V     + LR +ERG G T ACG+ ACA+VV        
Sbjct: 178 -GALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVTVILRELA 236

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
              V V+  GG L I W      V MTG A   + G++D+ 
Sbjct: 237 QSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEIDVD 277


>gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
           Epimerase
          Length = 274

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV   GNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQXGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+ D+   ++  
Sbjct: 121 PIWEPAKIPFTA-----NKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T A GS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>gi|261392870|emb|CAX50451.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis
           8013]
          Length = 283

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
 gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
          Length = 278

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 11/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R          +A+           D ++      D + D  
Sbjct: 1   MEFTKYQGLGNDFILVDNRHSTTPSLSPEEAVKLCDRHFGIGADGVIFALPG-DENSDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE Q CGNG+RC+ RF           KS+  +T+ GI++     +G + VD
Sbjct: 60  MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVKVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  K IP   +  K +                   VSMGNPH I FVE D+    
Sbjct: 120 MGTPFLLAKEIPTTLT--KAEEKVIDQSLEVGDQSWLVTCVSMGNPHCITFVE-DVAKIP 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G     H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA    
Sbjct: 177 LETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVAGVLT 236

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
              +R  +V++ GG L IEW   +N ++MTG A++ + G +D
Sbjct: 237 GHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVID 278


>gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120]
 gi|22256738|sp|Q8YVD0|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2
          Length = 279

 Score =  232 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R      IT + A+           D ++     ++   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  FL         + ++   T+ G++  +   DG I VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP        D    +              VSMGNPH I FVE D+    
Sbjct: 122 MGLPRLLAGEIPTTLGA--ADGKVINQPLEVEGQTWEVTCVSMGNPHCITFVE-DVAAIP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP F +  N    +V S + L +R WERG G+T ACG+ ACAS+VA+   
Sbjct: 179 LEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +++R  +V++ GG L IEW + +  ++MTG A + + GKL
Sbjct: 239 GRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279


>gi|313668759|ref|YP_004049043.1| diaminopimelate epimerase [Neisseria lactamica ST-640]
 gi|313006221|emb|CBN87683.1| putative diaminopimelate epimerase [Neisseria lactamica 020-06]
          Length = 283

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 145/284 (51%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID    +       I   +       FDQ++++   +   
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDAVSQNFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV  CGNG RC  RF+T +    +K    ET +G++  K + +G ++
Sbjct: 59  VDFRYRIFNADGSEVGQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVRETGPLIEAHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera sp. 301]
 gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera sp. 301]
          Length = 276

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 134/280 (47%), Gaps = 12/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +VI+       +T++ I  L+       FDQ++L+   + A  D   
Sbjct: 5   LHFTKMQGAGNDFIVINGIDQPFQLTAEQIQTLAHRQFGIGFDQLLLVETSKVA--DFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC VRF        +   + ET  GI+  K   +G ++V+MG 
Sbjct: 63  RIFNADGSEVAQCGNGARCFVRFVVDQKLSNKHEISVETASGIITPKLENNGLVTVNMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    +P        +     +             VSMGNPHA+  V+ D+    + +
Sbjct: 123 PRLSPSEVPFIADA-AANSYVLEVADQQITI----SAVSMGNPHAVQIVD-DVEIAPVVA 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ +  HP F E VN    ++     + LR +ERG G T ACG+ ACA+VVA   L + 
Sbjct: 177 LGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAVVAGIQLGRL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V   GG L I W   N  V MTG A   + G ++I
Sbjct: 237 QSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNIEI 276


>gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis]
          Length = 375

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 132/283 (46%), Gaps = 13/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           + F K  G+GN  +++D R      I+ +    L         D ++      +   D  
Sbjct: 91  LHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVN-GTDYS 149

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+  F+         +S+   T  G++V K   DG + VDM
Sbjct: 150 MRIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKVMVDM 209

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI-----FFVEDDL 175
           G+PIL    IP      +         PV+         VSMGNPH +          D+
Sbjct: 210 GQPILTAANIPTKLPKREDGAVVKAELPVDGKI-WIVTCVSMGNPHCVTFSRKDCEVLDV 268

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G L   H MF    N    ++ S   L +R WERG G T ACG+ ACA VVA
Sbjct: 269 NSLTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAGACALVVA 328

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           +    ++ R   V + GG L IEW++ +NHV+MTG A+K + G
Sbjct: 329 AVLEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSG 371


>gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
 gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
          Length = 276

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T++ +  L+        DQI+L+    DAS D   
Sbjct: 3   LKFTKMHGAGNDFVVLDGVRQQISLTTEQLRLLADRHFGVGCDQILLVEKAHDASADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    +     ET  G++  +   DG + V+MG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHDQKLTNKAEIVVETHNGLIRPRLEADGRVVVNMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ D   IP +               V         +VSMGNPHA+  V+ D+    +  
Sbjct: 123 PVFDAARIPFSG-----GTIEVMQPLVVADQTLMVSIVSMGNPHAVQVVD-DVERAAVEV 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  H  F + VN    ++   + + LR +ERG G T +CG+ ACA+VV+       
Sbjct: 177 LGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSGIRRGLL 236

Query: 243 NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           +  VSV   GG L I W  +   V MTG A   + G++++
Sbjct: 237 DSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276


>gi|241760323|ref|ZP_04758418.1| diaminopimelate epimerase [Neisseria flavescens SK114]
 gi|241319201|gb|EER55679.1| diaminopimelate epimerase [Neisseria flavescens SK114]
          Length = 283

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +V++      +  +  +   +       FDQ +++      +
Sbjct: 1   MKT--LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DG EV+ CGNG RC  RF+  +    +     ET +GI+V K   +G ++
Sbjct: 59  VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP        ++D      +  L       V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPRFMPSEIPFV-PAHGENKDALTHIVLVGLESVPVSCVNMGNPHAVILVD-DVET 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  +G  +  H  F E VN+   +V    S+ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVEHWGGAIESHEQFPERVNVGFVQVEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V V + GG L I W +   V MTG A+  +EG+L
Sbjct: 237 RNGLLKEGAPVRVTLPGGELFISWEECGDVQMTGPAETVFEGEL 280


>gi|326315548|ref|YP_004233220.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372384|gb|ADX44653.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 297

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 135/293 (46%), Gaps = 17/293 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPADGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC  R++  +      T   +T+ G++  +   DG ++VDMG 
Sbjct: 63  VIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTEDGRVTVDMGR 122

Query: 123 PILDWKLIPLARSF-----------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           P  D   +P   S              +D             + +  VVSMGNPHA+  V
Sbjct: 123 PRFDPAEVPFDASGLESTVRGAGQTWPLDLGAGAGAGAQEGDVVDVAVVSMGNPHAVQLV 182

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E D+    +A  G L+ +H  F + VN    ++     + LR +ERG G T ACG+ ACA
Sbjct: 183 E-DVDTAPVARTGPLIERHVRFPQRVNAGYLQIEDRSRVRLRVYERGAGETLACGTGACA 241

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           +V A   L   +  V V+  GG L I W  +    VFMTG A   +EG++DI 
Sbjct: 242 AVAAGIRLGLLDTRVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 294


>gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
 gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
          Length = 294

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 136/293 (46%), Gaps = 16/293 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFD-------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            P+     +P   +         + +              R    VSMGNPHA+  V+ D
Sbjct: 123 APVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-D 181

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +  Y +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V 
Sbjct: 182 VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVA 241

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
           A       +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 242 AGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDLTA 294


>gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
 gi|122326877|sp|Q0BS04|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
          Length = 275

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 14/282 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           ++DF KM G+GN  +V D R      ++     A++        DQ++++     A  DA
Sbjct: 2   LIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTVA--DA 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+RI N DGSE  +CGN  RCV   L           ET+ G+L+A+ N +G I +DMG+
Sbjct: 60  FMRIYNPDGSESGACGNATRCVADLLHRDGIAAPC-METVAGLLLAEINGNG-ICIDMGQ 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W+ +PLAR  D +        P+    L+ P   SMGNPHA FFV  DL   D+  
Sbjct: 118 PGLGWRDVPLAREMDTL------FLPLEAPGLKMPAACSMGNPHATFFV-ADLAELDIPV 170

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +HP+F E  N+  A++ S   + LR WERG GLT ACG+ ACA++V +      
Sbjct: 171 TGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGLA 230

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            R   V++ GG LLI W + + HV MTG A   + G++ +++
Sbjct: 231 EREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIALES 272


>gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
 gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
          Length = 281

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 11/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   D +     A+           D ++ +        D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDRHFGIGADGVIFVLPGT-PQTDYQ 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+          K++  +T+ G++  +   +  ++VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVTVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP             +              VSMGNPH I FVE ++    
Sbjct: 122 MGPPQLQAAQIPTT--LVTATEKVINQPLSVGGKSWLVTCVSMGNPHCITFVE-NVDEIP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     H  F +  N     V   + L +R WERG G+T ACG+ ACA+VVA    
Sbjct: 179 LEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVAGLLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           H+++R  +V++ GG L I W + + HV+MTG AK+ + G
Sbjct: 239 HRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSG 277


>gi|238028905|ref|YP_002913136.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
 gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
          Length = 288

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 132/287 (45%), Gaps = 10/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D       +T + + AL+        DQ++L+        D   
Sbjct: 3   LPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC VRF+  +      T   +   G+L      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDMGS 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P   +     R+              R   VVSMGNPHA+  V+ D+  + +
Sbjct: 123 PVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVVD-DVETFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G L+  H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 AEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKT 283
             +  V+V+  GG L I W         + M G A   +EG  ++  
Sbjct: 242 LLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA 288


>gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49]
          Length = 289

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  R    R+S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVNDRGLTDRRSVRVQVMKGLITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   +  +   +              R    VSMGNPHA+  V+ D   Y 
Sbjct: 123 APVFAPAQVPFDAAGLEGRAEGRDTLWPLDVGGRTRWITTVSMGNPHAVQVVD-DAEAYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
              +  V+V   GG L I W     +   + M G A   +EG++D+
Sbjct: 242 GLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDL 287


>gi|163757348|ref|ZP_02164437.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43]
 gi|162284850|gb|EDQ35132.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43]
          Length = 292

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 156/286 (54%), Positives = 196/286 (68%), Gaps = 1/286 (0%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+S+ V FAKM G+GN I+VIDMRG  D +TS+A  AL++ D T FDQIM IHD     V
Sbjct: 1   MEST-VPFAKMNGLGNDIVVIDMRGRSDAVTSEAAIALASGDRTGFDQIMAIHDIDLDGV 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  I I+N DGS  Q+CGNG RCVV+ L S   RKSFTF+T+ GIL A+E+ DG ISVDM
Sbjct: 60  DYRIDILNRDGSRSQACGNGTRCVVQALASETGRKSFTFKTLAGILTAEEHEDGLISVDM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P   W  IPLA  F    R    IGP++   L +P  V++GNPHA+F+V+DD++ YDL
Sbjct: 120 GRPEFAWDKIPLAEEFHDTTRIELQIGPIDAPVLHSPSAVAIGNPHAVFWVKDDVWSYDL 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG LL  HP+F E  N+SIARV    +LD+RTWERG GLT ACGSAACA+ V++    
Sbjct: 180 ERFGPLLENHPIFPERANISIARVIDDHTLDIRTWERGTGLTRACGSAACAAGVSAARTG 239

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           +T R V+V + GG L IEW +NNHV MTG A+ E+ G++D  TG W
Sbjct: 240 RTGRTVTVNVPGGPLEIEWRENNHVIMTGPAEWEFSGRVDPLTGAW 285


>gi|300692857|ref|YP_003753852.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07]
 gi|299079917|emb|CBJ52594.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07]
          Length = 285

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 128/281 (45%), Gaps = 7/281 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D      + T +   A++        DQ++L+       VD   RI N 
Sbjct: 1   MHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNH 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG P+ + 
Sbjct: 61  DGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGAPVFEA 120

Query: 128 KLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             +P          +          +        VSMGNPHA+  V+ D   + +   G 
Sbjct: 121 ARLPFVPDGLPTRVEGADTQHALQINGRTEWLSTVSMGNPHAVQVVD-DAEAFPVLEDGP 179

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+VVA       +  
Sbjct: 180 LIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRGLLDSP 239

Query: 246 VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
           V V   GG L I W      V MTG A   +EG LD+   K
Sbjct: 240 VKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDLDALK 280


>gi|37528457|ref|NP_931802.1| diaminopimelate epimerase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81572247|sp|Q7MYN5|DAPF_PHOLL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|36787895|emb|CAE17012.1| diaminopimelate epimerase (DAP epimerase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 274

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I           FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +  + ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      +  R                 VVSMGNPH +  V  D+   ++  
Sbjct: 121 PEFEPHHVPF-----RALRAEKTYILRVAERTVLCGVVSMGNPHCVIQV-PDVETAEVDI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E  N+   ++ +   + LR +ERGVG T ACGS ACA+V         
Sbjct: 175 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L I W      ++MTG A   ++G + +
Sbjct: 235 DNHVRVDLPGGSLFICWDGPGKPLYMTGPAMHVYDGTIHL 274


>gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
          Length = 387

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T+  + AL+        DQ++L+        D  
Sbjct: 101 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 160

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 161 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 220

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+   + +P   S      +              R    VSMGNPHA+  V+ D   Y 
Sbjct: 221 APVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVD-DAEAYP 279

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 280 VLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 339

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 340 GLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 387


>gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
 gi|2494041|sp|P74667|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
          Length = 279

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 9/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K  G+GN  +++D R   +  +T D    L         D ++     Q    D  
Sbjct: 3   LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQ-GGTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC+ +F      ++ K++   T+ G++  +   DG + VDMG
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEKTYRIHTLAGVITPQLLADGQVKVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP L  +LIP   +          +             VSMGNPH + FV+ D+   +L 
Sbjct: 122 EPQLLAELIPTTLA--PAGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTFVD-DVDSLNLT 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L   HP FS+  N    +V   + L +R WERG G+T ACG+ ACA+VVA+    +
Sbjct: 179 EIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAVLTGR 238

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +R  +V++ GG L IEW   +N ++MTG A++ + G+ +I
Sbjct: 239 GDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279


>gi|332527819|ref|ZP_08403857.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2]
 gi|332112214|gb|EGJ12190.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2]
          Length = 281

 Score =  231 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 131/280 (46%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D  G    ++ + I  L         DQI++I       VD   
Sbjct: 3   LRFTKMHGAGNDFVVLDATGAPLALSREQIRRLGDRRFGVGADQILVIERSTTPGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI N  G EV+ CGNG RC VR++         T   ET+  +L      DG + VDM  
Sbjct: 63  RIFNNTGDEVEQCGNGSRCFVRYVVDHGLTDKTTIRVETVNNLLELSLAADGRVRVDMNR 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ D   +P   S                       V+SMGNPHA+  V D +    +A+
Sbjct: 123 PVFDLARVPFDASGLTPRLVNGFELWPLADAGVEVAVLSMGNPHAVMRVAD-VDAAPVAA 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F   VN    +V S   + LR +ER  G T ACG+ ACA+VVA   L   
Sbjct: 182 VGPRVESHARFPRRVNAGFLQVLSRSEVKLRVYERDAGETLACGTGACAAVVAGIRLGWL 241

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +R V V   GG LLIEW D++  V MTG A   +EG++++
Sbjct: 242 DRRVEVHARGGDLLIEWPDDSASVLMTGPAVTVFEGEIEL 281


>gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
 gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
          Length = 280

 Score =  231 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+  +    FDQ++++    D  +D   
Sbjct: 7   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  I V+MGE
Sbjct: 67  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVNMGE 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      + ++                 VV+MGNPH +  VE D+   D+  
Sbjct: 127 PDFEPQRVPF-----RANKAEKTYIIRAVERTVLCGVVAMGNPHCVIQVE-DVNTADVEV 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F E VN+   ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 181 LGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  VSV + GG L I W      +FMTG A   ++G + +
Sbjct: 241 DNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280


>gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
 gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
          Length = 290

 Score =  231 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 11/282 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           +++F K +G+GN  +++D R     +    +A+           D ++      D   D 
Sbjct: 12  IMEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDD-QSDY 70

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
            +RI N DGSE Q CGNG+RC+ RF           KS+  +T+ GI++ +   +G + V
Sbjct: 71  TMRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKV 130

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L  K IP   +  K +    +          +   VSMGNPH I FVE ++   
Sbjct: 131 DMGNPFLLAKEIPTTLT--KGEEKVINQFLEVGGQSWSVTCVSMGNPHCITFVE-NVATI 187

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +   H +F E  N     V   + L +R WERG G+T ACG+ ACASVVA   
Sbjct: 188 PLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGVL 247

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               +R  +V++ GG L IEW + +N ++MTG A+  + G +
Sbjct: 248 TGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVI 289


>gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4]
 gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688]
 gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4]
 gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688]
          Length = 277

 Score =  231 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 135/283 (47%), Gaps = 12/283 (4%)

Query: 5   MVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           M+   F KM+GIGN  +VID      ++T D I A+S        DQ++++         
Sbjct: 1   MMKLEFTKMQGIGNDFVVIDAYSQPVSLTPDQIRAISDRHFGVGCDQLLIVEHATTPEAA 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC V+F+  +   +++    ET RG++  +   +G ++V+
Sbjct: 61  FRYRIFNADGGEVEQCGNGARCFVKFVHDQGLTQQREICVETARGLIYPRLEDNGEVTVN 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      +P             +   + H  +      SMGNPHA+  V+ ++    
Sbjct: 121 MGPPSFLPADLPFEAE----TIQSLYPLQLAHETVEVAIA-SMGNPHAVQLVD-NVDTAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  +  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+   L
Sbjct: 175 VAEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSGIRL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                 V V   GG L I W   +  V+MTG A   + G + +
Sbjct: 235 GHLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277


>gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437]
          Length = 280

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 145/283 (51%), Gaps = 14/283 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F KM G+GN  +V+            A            D ++ +   +  + D  +
Sbjct: 1   MMRFTKMHGLGNDFIVVTADTWPQEAPELARRLCDRRFGVGADGLVFLLPSR--AGDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118
           RI+N DGSE + CGN +RCV ++   R+   +K    ET  G+   +   DGS    I V
Sbjct: 59  RILNADGSEAEQCGNAVRCVAKYYYERISGAKKEIIVETGAGLQSVRLETDGSQVESICV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL+   +P+A   +++      IG            VSMGNPHA+ FV+ D   +
Sbjct: 119 DMGRPILEADRVPVALEGERVVAHPVKIG----EESFRFTAVSMGNPHAVIFVD-DAAAF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + ++G  L  HP+F    N+    V S   L++R WERGVG T ACG+ ACAS+VA+  
Sbjct: 174 PVETWGPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACASLVAAVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
               +R   V++ GG L IEW + ++ V+MTG A+  +EG+ +
Sbjct: 234 NGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGEWN 276


>gi|323182581|gb|EFZ67985.1| diaminopimelate epimerase [Escherichia coli 1357]
          Length = 269

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGEP  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P      + ++                 VVSMGNPH +  V+ D+    + + G +L
Sbjct: 121 SAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVETLGPVL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V            V 
Sbjct: 175 ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 VELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 269


>gi|94495526|ref|ZP_01302106.1| diaminopimelate epimerase [Sphingomonas sp. SKA58]
 gi|94424914|gb|EAT09935.1| diaminopimelate epimerase [Sphingomonas sp. SKA58]
          Length = 266

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 105/277 (37%), Positives = 149/277 (53%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R     +T     A++        DQ+++I D  DA  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARAAPVAMTEARARAIADRHAGIGCDQLIVIGDAPDA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           ++I N DGSEV++CGN  RCV  F+   +     T  T  G+L A+    G  SVDMG P
Sbjct: 59  MQIFNADGSEVEACGNATRCVPLFIGHDV-----TIRTRAGLLDARLIDGG-ASVDMGAP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW  IPLA + D +        P +   L  P  V++GNPH IFFV+ DL   D A  
Sbjct: 113 RFDWNAIPLAYAMDTL------TMPASWEDLPAPAAVNVGNPHVIFFVD-DLDAVDTARL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G ++ + P+F + VN++ A+V     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPMIEQDPLFPQRVNVNFAQVVGENHIRLIVWERGAGLTRACGTGACATAVAAIRRKLAH 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L+I+W     + MTG A   ++G+ D
Sbjct: 226 GPVTVTLPGGDLVIDWRPGGTIQMTGPATHVFDGEAD 262


>gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
 gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
 gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
 gi|254767097|sp|A3DK16|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
 gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
 gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
 gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313]
          Length = 280

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + ++      +N +  A            D ++LI   + A  D  +
Sbjct: 1   MRFTKMHGLGNDYIYVNCFEETVENPSEVAKKVSDRHFGIGSDGLVLIMPSERA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGN +RCV +++  R    +     ET+ GI V +          + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKAKLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+    +    +   I             VSMGNPHA+ +V+ ++  +
Sbjct: 119 DMGEPILKPENIPVNSDKEIFRTEPVEIDGKEFK----VTCVSMGNPHAVSYVK-NVDIF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  HP+F + +N     V    +L +R WERG G T ACG+ ACA +VAS  
Sbjct: 174 PLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              + R  +VK+LGG L+IEW++ NNHV+MTG A K +EG++D+
Sbjct: 234 NGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDL 277


>gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12]
 gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12]
          Length = 287

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 135/283 (47%), Gaps = 7/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G GN  +V+D       + +  +  L+        DQI+L+       VD   
Sbjct: 3   VAFTKMHGAGNDFVVLDATRSPLALNAAQLRLLADRHFGVGADQILLVEAAPSPEVDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V ++  +    ++    +T+ G++  +   DG ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDMGA 122

Query: 123 PILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D   +P           D +   P++         V+SMGNPHA+  V+ D+    +
Sbjct: 123 PVFDLPRVPFEAHGLRPRQVDGWEQWPLDLAGATAWVSVLSMGNPHAVQRVD-DVDTAPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP F   VN    ++   + + LR WERG G T ACG+ ACA+VVA     
Sbjct: 182 LRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLRHG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
               AV V+  GG L I W      V MTG A   ++G +D+ 
Sbjct: 242 WLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDLP 284


>gi|296313835|ref|ZP_06863776.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768]
 gi|296839564|gb|EFH23502.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768]
          Length = 283

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 146/284 (51%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID    +       I   +       FDQ++++   +   
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDAVSQNFTPEDVPIAEWADRFRGVGFDQLLVVGRSETEG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV  CGNG RC  RF+  +    +K    ET +G++  K + +G ++
Sbjct: 59  VDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGVIFPKLSDNGMVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVITVD-DVEC 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGI 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|187476670|ref|YP_784693.1| diaminopimelate epimerase [Bordetella avium 197N]
 gi|115421256|emb|CAJ47761.1| diaminopimelate epimerase [Bordetella avium 197N]
          Length = 298

 Score =  231 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 10/285 (3%)

Query: 5   MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62
           M+ +F KM G GN  +V+D      ++T +   AL         DQI+L+        D 
Sbjct: 7   MIWNFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGVGADQILLVEPATRPDADF 66

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC VRF+  +    +     E + G++V  E  D  ++V+M
Sbjct: 67  RYRIFNNDGSEVEHCGNGARCFVRFVHEQGLSSKNPLRAEIVSGLIVLDEGDDEQVTVEM 126

Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           G    D   +P      +  +  +D  ++ P+    +     V++ NPHA+  V  D+  
Sbjct: 127 GTTRFDPAALPFDVSGLAQRQQGQDTLYVLPLPGGEIELS-AVAISNPHAVQVV-ADVDQ 184

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             ++  G  +  HP F+  VN    ++    ++ LR +ERG G T ACG+ ACA+V A  
Sbjct: 185 APVSEVGAHIESHPRFARRVNAGFMQIQDRHNIRLRVYERGAGETLACGTGACAAVAAGI 244

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                +  V V+  GG L I W+    + MTG A+  + G++DI 
Sbjct: 245 RRGLLDSPVRVQTRGGALTIAWNGEQ-LRMTGPAESVFSGQVDID 288


>gi|312797551|ref|YP_004030473.1| Diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454]
 gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 131/286 (45%), Gaps = 10/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      + T   +  L+        DQ++L+       VD   
Sbjct: 44  LKFTKMHGAGNDFVVLDGVRNMISPTPALVRYLADRNFGVGADQLLLVERPTLDGVDFKY 103

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+      + ++   +   G++      +G + VDMG 
Sbjct: 104 RIFNCDGKEVEHCGNGARCFVKFVRDTGLSQARTIRVQVQHGVITLSVQDNGEVLVDMGA 163

Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+L    +P   S      D D        H   +   VVSMGNPHA+  V+ D     +
Sbjct: 164 PVLAAPHVPFDTSGLTPARDGDDQLWPLDVHGSTQWISVVSMGNPHAVQIVD-DADAAPV 222

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  H  F   VN    ++ S   + LR +ERG G T ACGS ACA+VV      
Sbjct: 223 NRDGPVIESHARFPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGIRRG 282

Query: 241 KTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +  V V+  GG L I W      +  V M G A   +EGK+D+ 
Sbjct: 283 VLDSPVRVRTRGGTLTISWDGQRNSDASVMMAGPATTVFEGKIDVP 328


>gi|15676658|ref|NP_273802.1| diaminopimelate epimerase [Neisseria meningitidis MC58]
 gi|21362493|sp|Q9K060|DAPF_NEIMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|7225990|gb|AAF41173.1| diaminopimelate epimerase [Neisseria meningitidis MC58]
          Length = 283

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280


>gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
 gi|229813238|sp|A5D193|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
          Length = 280

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 16/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K  G+GN  +++D        ++    A+           D ++L+     A  D 
Sbjct: 1   MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPSA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILV----AKENRDGSI 116
            +RI N DGSE + CGN +RCV ++L  R   K+     ET+ G+++     +E R   +
Sbjct: 59  SMRIFNPDGSEAEMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPELLVEEGRVRLV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP L+   IP+     ++  +    G   +        VSMGNPH + FV+ DL 
Sbjct: 119 RVDMGEPRLERSEIPMEGPPGRVLGEPLETGGAVYRI----TAVSMGNPHCVIFVQ-DLD 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                + G L+  HP F    N+   +V + E + +R WERG G T ACG+ ACA+VVA 
Sbjct: 174 AVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
                T R V+V +  G L IEW +  HV+M+G A++ + G+   +T
Sbjct: 234 VLNGYTGRRVTVHLKAGDLFIEWPEGKHVYMSGPAEEVFSGEYPYRT 280


>gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
 gi|122321974|sp|Q0BAY6|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
          Length = 289

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   S      +              R    VSMGNPHA+  V+ D+  Y 
Sbjct: 123 APVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-DVEAYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 242 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 289


>gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
 gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
          Length = 284

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 16/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  ++ID R   + +     A+     +     D ++        + D  
Sbjct: 3   IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTS-NTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----------SFTFETIRGILVAKENRD 113
           +RI N D SE Q CGNG+RC+ +F+     R           S+  +T+ G++  +   D
Sbjct: 62  MRIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILAD 121

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G + VDMG+P L    IP   +  K D    ++             VSMGNPH I FVE 
Sbjct: 122 GQVKVDMGQPRLLAVEIPTTLT--KADEKVVNVPLSVAEQSWKVTCVSMGNPHCITFVE- 178

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+    LA  G     HP F E  N    +V   + L +R WERG G T ACG+ ACA V
Sbjct: 179 DVAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGACAVV 238

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           VA       +R+V+V++ GG L+IEW  +  ++M+G A++ + G+ 
Sbjct: 239 VAGVLTGNCDRSVTVELPGGNLMIEWSASERLYMSGPAERVFTGQW 284


>gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH]
          Length = 289

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 132/288 (45%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+             E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D+  + 
Sbjct: 123 APVFEPARVPFDTSGLGGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVD-DVEAFP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|269468224|gb|EEZ79914.1| diaminopimelate epimerase [uncultured SUP05 cluster bacterium]
          Length = 270

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 13/280 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+D    + + +++ I AL+       FDQ+++I       VD  
Sbjct: 1   MINFTKMHGLGNDFMVVDNSAGNISFSAEQIRALAQRHFGIGFDQLLMIESTNTKDVDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
             I N DGSEV+ CGNG RC  RF+  +    +   + ET  G++    N D S+ VDMG
Sbjct: 61  YVIYNSDGSEVEQCGNGARCFARFVREKGLSDKNPISVETKSGLISLFINDDHSVRVDMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP+ +   +PL    + +            +      V S GNPH +  V+ D+   D+ 
Sbjct: 121 EPVFNPSDVPLIAPEESL---------YYSIEGYEVGVFSTGNPHCVMIVD-DVEGVDVE 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +    + +  +     N+   ++ S   ++LR +ERG G T ACGS ACA+V+    + +
Sbjct: 171 TIALRIQQSNLLPNQANIGFMQIISRNEINLRVYERGSGETLACGSGACAAVIHGVRIGQ 230

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +  V+  + GG  LIE++   HVF++G A+  +EG +D+
Sbjct: 231 LDHKVTAHLRGGDALIEYNKGEHVFLSGPAQFVFEGWVDV 270


>gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
 gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
          Length = 281

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID       +  + I   +       FDQ++++   + A      
Sbjct: 3   IHFTKMHGLGNDFMVIDAINQAIELNPEQIRQWANRHFGIGFDQLLIVEPPKTADTLFTY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  R++  +     K     T  G +V   N  G ++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARYVYDKGLTTEKEIPVGTASGRIVLHINDSGDVTVDMGR 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+     IP     +              +       VSMGNPHA+  VE ++    ++ 
Sbjct: 123 PMFTPTNIPFITECEATSYPLTLDDGSEWVID----AVSMGNPHAVLEVE-NVDTAPVSH 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F   VN+   ++   + + LR +ERG G T ACG+ ACA+VV+    ++ 
Sbjct: 178 LGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAAVVSGIRRNRL 237

Query: 243 NRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279
           +    V + GG L + W     + V MTG A+  +EG++
Sbjct: 238 DSPCLVDVRGGRLSVAWTGKTQDSVLMTGPAQSVFEGQI 276


>gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
 gi|122314470|sp|Q0AIP0|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
          Length = 278

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 132/283 (46%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           + F KM G+GN  +VI+      ++T      I  L+       FDQ++++   ++   D
Sbjct: 3   LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGG-D 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EV+ CGNG RC  RF    +   + +   ET RGI+      +G +SV+
Sbjct: 62  FRYRIFNADGGEVEQCGNGARCFARFVRDYNLTDKNTIRVETARGIITPTIENNGEVSVN 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IP   +                        VS+GNPHA+  +  D+    
Sbjct: 122 MGVPQFEPAEIPFQAAQRMPVYPLQI-----GDKTIEISAVSIGNPHAVQII-PDIDLAP 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  +  HP+F E VN    ++     + LR +ERG G T ACG+ ACA+VV     
Sbjct: 176 VTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAAVVCGILR 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +  V V M GG L I W   +  V+MTG A   +EG +D+
Sbjct: 236 GLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278


>gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424]
 gi|226724206|sp|B7KH06|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424]
          Length = 281

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 11/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + +     A+           D ++ +        D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTS-QTDYQ 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+    K     KS+  +T+ G++  +      ++VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGKSYRIDTLGGLMTPRLEAQEQVTVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP                            VSMGNPH I FVE D+    
Sbjct: 122 MGLPRLLGSEIPTTLVSRT--EKVIDQPIEVAGQSWLVTCVSMGNPHCITFVE-DVKSIA 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G     H  F +  N     V   + L +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            K++R  +V++ GG L I W + + HV+MTG AK+ + G  +
Sbjct: 239 GKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTGVYE 280


>gi|85373610|ref|YP_457672.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594]
 gi|122544848|sp|Q2NBR6|DAPF_ERYLH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84786693|gb|ABC62875.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594]
          Length = 269

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 100/277 (36%), Positives = 142/277 (51%), Gaps = 17/277 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           V F KM G+GN  +++D R       T+    AL+        DQ++L+     A  D  
Sbjct: 3   VSFTKMHGLGNDFIMLDARAESLPPMTAATARALADRKTGIGCDQVILLEPSDSA--DFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DG EV++CGN  R V          +        G ++A     G   VDMG P
Sbjct: 61  MRIFNADGGEVEACGNASRAVALLHGEAANVE------TSGGVIAIAPASGGARVDMGVP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW+ IPLA + D +        PV    L  P  V++GNPH +FFV+ D     L + 
Sbjct: 115 RFDWEAIPLAYAMDTLSL------PVGWGELEAPAAVNVGNPHVVFFVD-DADAVPLDTM 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P+F E +N++IA +T  ++L L  WERGVGLT ACG+ ACA+ +A+     T 
Sbjct: 168 GPGIETDPLFPERINVNIASLTGDDALKLHVWERGVGLTRACGTGACATAIAAMRRGLTG 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           R V+V + GG L IEW  ++H+ MTG A + + G  D
Sbjct: 228 RKVAVTLPGGTLQIEWDADDHIIMTGPAAESFRGTFD 264


>gi|325140085|gb|EGC62614.1| diaminopimelate epimerase [Neisseria meningitidis CU385]
          Length = 301

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I   +       FDQ++++   +   VD 
Sbjct: 20  NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 79

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 80  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+    +
Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L 
Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257

Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 258 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 298


>gi|240123026|ref|ZP_04735982.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|240127732|ref|ZP_04740393.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
 gi|268681653|ref|ZP_06148515.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|268686123|ref|ZP_06152985.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
 gi|268621937|gb|EEZ54337.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332]
 gi|268626407|gb|EEZ58807.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035]
          Length = 283

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID            I A +       FDQ++++   +   
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++
Sbjct: 59  VDFRYRIFNADGSEVVQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVRETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu]
          Length = 289

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALANRHFGVGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  +    ++S   E ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVLDKRLTDKRSVRVEVMKGLITLTMQENGEVVVDMG 122

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   +    + +              R    VSMGNPHA+  V+ D   Y 
Sbjct: 123 APVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DAERYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G L+ +H  F++ VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLAEGPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 242 GLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDLAA 289


>gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
 gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
          Length = 276

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 98/277 (35%), Positives = 140/277 (50%), Gaps = 7/277 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID      N T      L+        DQ++++   Q A VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  VRF+T +    +++   ET+ GI+  +   +G I+VDMG PIL+ 
Sbjct: 61  DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120

Query: 128 KLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLASFGN 185
           + +P   R           + P++     N   VVSMGNPHA+  V  D+    +   G 
Sbjct: 121 EDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVV-ADVEEAPVREDGV 179

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VVA          
Sbjct: 180 LIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGLLVSP 239

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V V+  GG L+I W   ++ V MTG A   +EG+++I
Sbjct: 240 VKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276


>gi|209542703|ref|YP_002274932.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 279

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G+GN  +V+D R     +T   I AL+        DQ +++        D  
Sbjct: 2   MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DG+E  +CGN  RCV   L  +  R+    +T  G+L A+ +  G ++VDMG P
Sbjct: 62  VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LDW+ +PLAR+ D +                +P   SMGNPHA FF++D L    + + 
Sbjct: 122 ALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA- 170

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL   P+F E  N+  A V S   L LR WERG GLT ACGS ACA+VV +       
Sbjct: 171 GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVE 230

Query: 244 RAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282
           R  +V M GG L + W       +  HV MTG A   + G  D +
Sbjct: 231 RTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 275


>gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 278

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 18/285 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G+GN  +V+D R     +T   I AL+        DQ +++        D  
Sbjct: 1   MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DG+E  +CGN  RCV   L  +  R+    +T  G+L A+ +  G ++VDMG P
Sbjct: 61  VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LDW+ +PLAR+ D +                +P   SMGNPHA FF++D L    + + 
Sbjct: 121 ALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA- 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL   P+F E  N+  A V S   L LR WERG GLT ACGS ACA+VV +       
Sbjct: 170 GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVE 229

Query: 244 RAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282
           R  +V M GG L + W       +  HV MTG A   + G  D +
Sbjct: 230 RTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 274


>gi|307294712|ref|ZP_07574554.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1]
 gi|306879186|gb|EFN10404.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1]
          Length = 266

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 104/277 (37%), Positives = 148/277 (53%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R    ++T     A++        DQ++LI +   A  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARETALDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCV  F       +    ET  G+L AK    G  SVDMG+P
Sbjct: 59  MRIFNSDGSEVEACGNATRCVPLF-----IGRDVLIETKAGLLDAKAVDGG-ASVDMGQP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  IPL+ + D +        PV+   L  P  V++GNPH IFFV+ DL   +    
Sbjct: 113 RLEWDAIPLSYAMDTL------TMPVSWEDLPAPVAVNVGNPHVIFFVD-DLDGVNFDRL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+   P+F   VN++ A++     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPLIEHDPLFPARVNVNFAQMVGDNHIRLIVWERGAGLTRACGTGACATAVAAVRRKLVS 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +V + GG L+I+W    H+ MTG A   ++G+ D
Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262


>gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
 gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
          Length = 300

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 138/287 (48%), Gaps = 11/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGIDFQY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC +RF+       +     +T+ G++  +   DG ++VDMG 
Sbjct: 63  VIHNADGGEVEQCGNGARCFMRFVKEHKLTDKTQVRVQTLAGVIEPRMGADGRVTVDMGA 122

Query: 123 PILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           PI +   +P       A+     ++    +G      + +  V+SMGNPHA+  V+ ++ 
Sbjct: 123 PIFEAARVPFDTAGLDAQPDGSWEKWHLALGTRAGSPIVSVAVLSMGNPHAVQVVD-NVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G  +  HP F + VN    +V     + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 182 TAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
             L      V V+  GG L IEW  +   V MTG A   +EG +D+ 
Sbjct: 242 IRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDIDVP 288


>gi|240115186|ref|ZP_04729248.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|260440996|ref|ZP_05794812.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
 gi|268600866|ref|ZP_06135033.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|291044324|ref|ZP_06570033.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
 gi|268584997|gb|EEZ49673.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18]
 gi|291011218|gb|EFE03214.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2]
          Length = 283

 Score =  230 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID            I A +       FDQ++++   +   
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++
Sbjct: 59  VDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVYLESGIQPVSCVNMGNPHAVIVVD-DVEC 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVRETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|59800783|ref|YP_207495.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090]
 gi|194098069|ref|YP_002001117.1| diaminopimelate epimerase [Neisseria gonorrhoeae NCCP11945]
 gi|239998527|ref|ZP_04718451.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|240013652|ref|ZP_04720565.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI18]
 gi|240016091|ref|ZP_04722631.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA6140]
 gi|240080233|ref|ZP_04724776.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|240112446|ref|ZP_04726936.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|240117470|ref|ZP_04731532.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|240120722|ref|ZP_04733684.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID24-1]
 gi|240125278|ref|ZP_04738164.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|254493249|ref|ZP_05106420.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291]
 gi|268594387|ref|ZP_06128554.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|268596384|ref|ZP_06130551.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|268598514|ref|ZP_06132681.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|268603172|ref|ZP_06137339.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|268683880|ref|ZP_06150742.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|293399514|ref|ZP_06643667.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62]
 gi|59717678|gb|AAW89083.1| putative diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090]
 gi|193933359|gb|ACF29183.1| DapF [Neisseria gonorrhoeae NCCP11945]
 gi|226512289|gb|EEH61634.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291]
 gi|268547776|gb|EEZ43194.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02]
 gi|268550172|gb|EEZ45191.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19]
 gi|268582645|gb|EEZ47321.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11]
 gi|268587303|gb|EEZ51979.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1]
 gi|268624164|gb|EEZ56564.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679]
 gi|291610083|gb|EFF39205.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62]
 gi|317163802|gb|ADV07343.1| diaminopimelate epimerase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 283

 Score =  230 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID            I A +       FDQ++++   +   
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV  CGNG RC  RF+  +    +K    ET +GI+  K + +G ++
Sbjct: 59  VDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G+ +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA  
Sbjct: 177 APVRETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +  + V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280


>gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
 gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
 gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
          Length = 289

 Score =  230 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T+  + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+   + +P   S      +              R    VSMGNPHA+  V+ D   Y 
Sbjct: 123 APVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVD-DAEAYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 242 GLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289


>gi|284050332|ref|ZP_06380542.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca]
          Length = 286

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 138/287 (48%), Gaps = 11/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I     A+           D ++      D + D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+     +      +   T  G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP   S + +      +         +   VSMGNPH I FV+ D+    
Sbjct: 122 MGLPRLLAAEIPTTLSENSLKV--IDVPLQVAGQPWSVTCVSMGNPHCITFVD-DVASVP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
            + +R V+V++ GG L IEW   +  ++MTG A+  ++G+L     +
Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQLTFPINE 285


>gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
 gi|189082824|sp|B0C312|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
          Length = 283

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 134/285 (47%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V+F K +G+GN  ++ID R      +T D  +     +     D ++     +    D  
Sbjct: 3   VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPE-GDTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISV 118
           +RI N DGSE + CGNG+RC+ RFL     +   T       T+ G +      DG + V
Sbjct: 62  MRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKV 121

Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMG P L  + IP  L    D +      +   +         VSMGNPH I FV+ DL 
Sbjct: 122 DMGPPFLVPQEIPTTLGEGTDPVVNQPLEVAGQSWP----VTCVSMGNPHCITFVD-DLE 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D  + G     HP+F + +N    +V   + L +  WERG G T ACG+ ACA +VA 
Sbjct: 177 AIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLVAG 236

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
               K+    ++++ GG L I W  +   VFMTG A+K + G  +
Sbjct: 237 VLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTGIYE 281


>gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147]
          Length = 293

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 133/287 (46%), Gaps = 11/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+             E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S  +  R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + +HP F++ VN    +  S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
            + +  V+V   GG L I W     +N  + M G A   +EG +D+ 
Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDLS 288


>gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
 gi|166224251|sp|A3N4H9|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
          Length = 289

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + + P F + VN    +V S   ++LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIELPA 289


>gi|332969969|gb|EGK08969.1| diaminopimelate epimerase [Kingella kingae ATCC 23330]
          Length = 282

 Score =  230 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 7/281 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID         ++ I   +       FDQ++++   Q   VD   
Sbjct: 4   LKFSKMHGLGNDFMVIDAINQTFEPRAEQIAQWANRYTGIGFDQLLVVEKAQSDDVDFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T +          ET RGI+  + N DG ++V+MG+
Sbjct: 64  RIFNADGGEVEQCGNGARCFVKFVTEQGLTDKPEIVVETARGIIKPRLNDDGLVTVNMGQ 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      +P      +   D+     VN +      +VSMGNPHA+  +  D+    + +
Sbjct: 124 PRFAPDDVPFVLRSGEKADDK-TFIVVNGIDSAEMSLVSMGNPHAV-MLVGDVATAPVEN 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +GN L  H  F   VN+   ++   + + LR +ERG G T ACG+ ACA+VV+   L   
Sbjct: 182 WGNALQNHARFPARVNVGFMQIVDAQHIKLRVFERGSGETQACGTGACAAVVSGVRLSLL 241

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + V + GG L I W D   V MTG A   + G++ +
Sbjct: 242 TAGEPIRVSLPGGDLYISWQDGGDVMMTGPAVTVFTGEIAV 282


>gi|126740999|ref|ZP_01756682.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6]
 gi|126717925|gb|EBA14644.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6]
          Length = 284

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 17/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-DASVDAF 63
           + F KM G+GN  +V+D R    ++T      ++       FDQ+ LI   + ++  DA 
Sbjct: 12  LPFMKMHGLGNDFVVVDARHLKLDVTPALAKGIAHRRFGIGFDQLTLIESPKANSPADAH 71

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DGS   +CGN  RCV R L +   +      T RG L+A ++ DG  SV+MG+P
Sbjct: 72  LLFYNADGSTSAACGNATRCVARHLMAESGKSELHLTTDRGDLLAHDSGDGLTSVNMGQP 131

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W  +PLA   D ++                P    MGNPH  FFVE +     L  F
Sbjct: 132 QLLWDQVPLAEEVDTLEL----------PIEGGPTATGMGNPHCTFFVE-NADLIPLEEF 180

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G     HP++ E  N+ +A +   + + +R WERGVG+T A GS++CA+ VA+     T 
Sbjct: 181 GPRYEHHPLYPERTNVQVAHIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTG 240

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           R V V + GG L I+W ++  V+MTG       G     T ++++ 
Sbjct: 241 RKVQVDLDGGTLWIDWREDG-VWMTGPTMHVSSGSF---TREFLES 282


>gi|299533135|ref|ZP_07046520.1| diaminopimelate epimerase [Comamonas testosteroni S44]
 gi|298718912|gb|EFI59884.1| diaminopimelate epimerase [Comamonas testosteroni S44]
          Length = 296

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 13/294 (4%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M   M + F KM+G GN  +V+D       +++     L+        DQI+ +      
Sbjct: 1   MCGIMQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAE 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
            VD    I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + +G +
Sbjct: 61  GVDFEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRV 120

Query: 117 SVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +VDMG P LD   +P               +    +             VSMGNPHA+  
Sbjct: 121 TVDMGAPQLDPAKVPFTTDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQL 180

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V+ D+    +   G L+  H  F + VN    ++ +   + LR +ERG G T ACG+ AC
Sbjct: 181 VD-DVDAALVGLHGPLIENHARFPQRVNAGFMQILNRGEVRLRVYERGAGETLACGTGAC 239

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A+VVA       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 240 AAVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293


>gi|238022271|ref|ZP_04602697.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147]
 gi|237866885|gb|EEP67927.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147]
          Length = 314

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 137/282 (48%), Gaps = 9/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID         S  I A +       FDQ++L+   Q  + D   
Sbjct: 32  LKFSKMHGLGNDFMVIDGINQVFTPNSAHIAAWANRHFGIGFDQLLLVERAQTPAADFRY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI N DG EVQ CGNG RC  +F+  +          ET  GI+  +   +G ++VDMG 
Sbjct: 92  RIFNADGGEVQQCGNGARCFAKFVYDKGLTDKTHIAVETAAGIIKPQIQPNGLVTVDMGA 151

Query: 123 PILDWKLIPLARSFDKMDRD---RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           P +    IP     D  +        I   N        +VSMGNPHA+  V+ D     
Sbjct: 152 PRVLPDDIPFRLPADGSETAGALTHQIVWDNRQPAIAVSLVSMGNPHAVLRVD-DTKTAP 210

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  L +HP F E VN+   ++     + LR +ERG G T ACG+ ACA+VVA    
Sbjct: 211 VAEIGAALQQHPQFPERVNVGFMQLLDPTHIALRVFERGAGETLACGTGACAAVVAGMRQ 270

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                   V V + GG L ++WH  +HV MTGEA   ++G+L
Sbjct: 271 GWLAAGETVQVSLRGGDLFVQWHSGSHVMMTGEAVWVFDGEL 312


>gi|264680264|ref|YP_003280174.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2]
 gi|262210780|gb|ACY34878.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2]
          Length = 296

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 13/294 (4%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M   M + F KM+G GN  +V+D       +++     L+        DQI+ +      
Sbjct: 1   MCGIMQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAE 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
            VD    I N DG EV+ CGNG RC  R++  +    +     +T+ G++  + + +G +
Sbjct: 61  GVDFEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRV 120

Query: 117 SVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +VDMG P LD   +P               +    +             VSMGNPHA+  
Sbjct: 121 TVDMGAPQLDPAKVPFTNDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQL 180

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V+ D+    +   G L+  H  F + VN    ++ +   + LR +ERG G T ACG+ AC
Sbjct: 181 VD-DVDAALVGLHGPLIENHARFPQRVNAGFMQILNRSEVRLRVYERGAGETLACGTGAC 239

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           A+VVA       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 240 AAVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293


>gi|294012736|ref|YP_003546196.1| diaminopimelate epimerase [Sphingobium japonicum UT26S]
 gi|292676066|dbj|BAI97584.1| diaminopimelate epimerase [Sphingobium japonicum UT26S]
          Length = 266

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/277 (37%), Positives = 149/277 (53%), Gaps = 16/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M  F+KM G+GN  +VID R    ++T     A++        DQ++LI +   A  D  
Sbjct: 1   MGRFSKMHGLGNDFVVIDARESTLDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCV  F+      +    ET  G+L AK    G  SVDMG+P
Sbjct: 59  MRIFNSDGSEVEACGNATRCVPLFV-----GRDVLIETKAGLLDAKAVDGG-ASVDMGQP 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  IPLA + D +        PV+   L  P  V++GNPH IFF++ DL   +    
Sbjct: 113 RLEWDAIPLAYAMDTL------TMPVSWEDLPAPVAVNVGNPHVIFFLD-DLDGVNFDRL 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+   P+F   VN++ A++     + L  WERG GLT ACG+ ACA+ VA+      +
Sbjct: 166 GPLIEHDPLFPARVNVNFAQIAGNNHIRLVVWERGAGLTRACGTGACATAVAAVRRKLAS 225

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +V + GG L+I+W    H+ MTG A   ++G+ D
Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262


>gi|315497312|ref|YP_004086116.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48]
 gi|315415324|gb|ADU11965.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48]
          Length = 280

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 106/280 (37%), Positives = 153/280 (54%), Gaps = 10/280 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D R      ++  + A         FDQ++ I     AS DAF+R
Sbjct: 4   PFLKMNGLGNDFVVVDARQTPFRPSAAQVKAWGDRASGIGFDQLIAIEGA--ASGDAFMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----GSISVDMG 121
           + N DG  V++CGN +RCV  +L           +T+ G   AK        G +SVDMG
Sbjct: 62  VWNSDGGPVETCGNALRCVGWYLDRDAPGNDLHIDTLGGATAAKVLERDAKTGMVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L W  IPL+   +    +   +GP++      P  VSMGNPH +FFVE D+   D+ 
Sbjct: 122 APRLAWTQIPLSEEMNTERLE-LQVGPIDAPLYHTPCAVSMGNPHVVFFVE-DVAAVDVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+L+  HP+F EGVN+  A+V    ++ +R WERG G+T ACG+ ACA++VA      
Sbjct: 180 RTGSLIENHPLFPEGVNVEFAQVIDRNTIRMRVWERGAGITKACGTGACATLVACARRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           ++R  +V M GG L I W   ++HV MTG  + E+EG+L+
Sbjct: 240 SDRHATVIMDGGPLHILWRQADDHVIMTGPVEVEFEGQLN 279


>gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39]
          Length = 295

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 140/285 (49%), Gaps = 12/285 (4%)

Query: 3   SSM-VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           S M ++F K  G+GN  ++ID R   + I     A+           D ++      D +
Sbjct: 7   SVMAIEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGA 65

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
            D  +RI N DGSE + CGNG+RC+ +F+     +      +   T  G++  +   DG 
Sbjct: 66  SDYTMRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQ 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L    IP   S + +      +         +   VSMGNPH I FV+ D+
Sbjct: 126 VKVDMGLPRLLAAEIPTTLSENSLKV--IDVPLQVAGQPWSVTCVSMGNPHCITFVD-DV 182

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA
Sbjct: 183 ASVPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVA 242

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
                + +R V+V++ GG L IEW   +  ++MTG A++ ++G+L
Sbjct: 243 GVLTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQL 287


>gi|59713091|ref|YP_205867.1| diaminopimelate epimerase [Vibrio fischeri ES114]
 gi|75431420|sp|Q5E1W7|DAPF_VIBF1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|59481192|gb|AAW86979.1| diaminopimelate epimerase [Vibrio fischeri ES114]
          Length = 276

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/279 (34%), Positives = 139/279 (49%), Gaps = 10/279 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +    + S +  T +G ++ K   D  I+V+MGEP
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           + +   IP          ++ ++  V+   L +   VSMGNPH    V DD+  YD+  +
Sbjct: 124 VFEPNKIPFKA----TQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKY 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  H  F E VN    ++ S   + LR +ERG G T ACGS AC +V          
Sbjct: 178 GQLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLG 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             V V + GG L I W      +FMTG A   ++G+L I
Sbjct: 238 EEVKVSLPGGDLHIVWQGPGKPLFMTGPATHVYDGQLSI 276


>gi|121997990|ref|YP_001002777.1| diaminopimelate epimerase [Halorhodospira halophila SL1]
 gi|166224261|sp|A1WWB3|DAPF_HALHL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|121589395|gb|ABM61975.1| diaminopimelate epimerase [Halorhodospira halophila SL1]
          Length = 287

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 10/284 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME +GN  +V+D      ++T + I  L+        DQ+++       + D   
Sbjct: 1   MRFTKMEALGNDFVVLDGIRQRLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+EV+ CGNG+RC+ RFL             ET   I  A+   DG +SVDMG 
Sbjct: 61  RIFNADGTEVEHCGNGVRCLARFLVDEGLAAPGVLRIETDGRITEAEPRDDGQVSVDMGP 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IP      +             +       VSMGNPHA+  V+ D+    +A 
Sbjct: 121 PELEPARIPFQAPVRQEAYRLATSRGEQTIG-----AVSMGNPHAVLRVD-DMTGAPVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  + +HP F   VN+    V + + + LR +ERGVG T ACG+ ACA+VVA       
Sbjct: 175 LGPEIERHPRFPRRVNVGFMEVCTRDRIRLRVFERGVGETPACGTGACAAVVAGRLRDWL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285
           +  V+V++ GG L+I W      V+MTG A+  + G++++    
Sbjct: 235 DAPVTVELTGGVLVIHWLGPGRSVWMTGPARTVFRGEIELPASA 278


>gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
 gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
 gi|123538287|sp|Q2T269|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
          Length = 289

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 131/288 (45%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+             E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|85060324|ref|YP_456026.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans']
 gi|123518670|sp|Q2NQF4|DAPF_SODGM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84780844|dbj|BAE75621.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans']
          Length = 274

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF  + +   ++     T  G +V     D S+ V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRMKNLTNKRDIHVSTQTGRMVLTVTEDDSVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D + +    +        + +       L    VVSMGNPH +  V+  + +  +A+
Sbjct: 121 PNFDPQQVLFRAA---RVEKTYIMRAAEQTVLCG--VVSMGNPHCVIAVD-SVDNAPVAT 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V +   + LR +ERG G T ACGS ACA+V       + 
Sbjct: 175 LGPVLESHERFPERANIGFMQVLNRGHIRLRVYERGAGETQACGSGACAAVAVGISQGQL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 AEQVQVELTGGRLAISWRGPGHPLYMTGPATHIYDGFIHL 274


>gi|126730998|ref|ZP_01746807.1| diaminopimelate epimerase [Sagittula stellata E-37]
 gi|126708714|gb|EBA07771.1| diaminopimelate epimerase [Sagittula stellata E-37]
          Length = 279

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/287 (34%), Positives = 146/287 (50%), Gaps = 18/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           +++ + F KM G+GN  +VID R     +T +    L+       FDQ+ LI      + 
Sbjct: 8   RATGLPFMKMHGLGNDFVVIDARARSVQVTPELAMRLADRHMGVGFDQLALIEPG--GNA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +  +N DGS   +CGN  RC+ R L +   +      T  G L A +  +G  SV+M
Sbjct: 66  DAHLVFLNSDGSTSAACGNATRCIARHLMTETGKDRLVLTTDHGALQAVDTGNGMTSVNM 125

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P+LDW+ IPLA   D +                +P   SMGNPH  FFV  D    DL
Sbjct: 126 GPPVLDWQNIPLASEVDTLHL----------PIDGDPVATSMGNPHCTFFV-ADAEAVDL 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG  +  HP++ +  N+ +A +   + L +R WERG GLT A GS++CA+ VA+    
Sbjct: 175 TDFGPRIEHHPLYPQRTNVQVATLIGPDHLRMRVWERGAGLTLASGSSSCATAVAAARRG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
            T RAV + + GG L ++W ++  V+MTG     + G L   T +W+
Sbjct: 235 LTGRAVHIDLDGGTLHVDWREDG-VWMTGPTSHVFTGTL---TAEWL 277


>gi|296114904|ref|ZP_06833552.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978610|gb|EFG85340.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769]
          Length = 274

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 142/286 (49%), Gaps = 18/286 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++S   F KM G+GN  +++D R    ++T   I ALS        DQ +++       
Sbjct: 1   MKTS---FYKMHGLGNDFVIMDERASRLDLTPARIAALSDRQRGIGCDQFVVLRPACRDG 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D F+R  N DG+E  +CGN  RCV   +       +   +T  G+L  +   DG I+VD
Sbjct: 58  ADVFVRFFNADGTESGACGNASRCVAALIGDERGTMAPVLQTRAGLLPTRIAGDGVITVD 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA-IFFVEDDLYHY 178
           MG P LDW+ IPL R  D +    +           +P   SMGNPHA +F    D    
Sbjct: 118 MGPPALDWRDIPLVREVDTLHLPLW----------GDPAAASMGNPHATVFLDVGDTTDP 167

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  +   P+F E  N+  A+V + + + LR WERG GLT ACGS ACA+VV +  
Sbjct: 168 RVR--GPAMECDPLFPERANIGFAQVRARDDMRLRVWERGAGLTLACGSGACAAVVNAVR 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
                R   V+M GG L + W + + HV M+G A   +EG + + T
Sbjct: 226 RGLVGRTCVVEMDGGVLSVTWRESDGHVLMSGPAVMSFEGTVALDT 271


>gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
 gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
          Length = 309

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 83  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMG 142

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   +     ++              R    VSMGNPHA+  V+ D   Y 
Sbjct: 143 APVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DAEAYP 201

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 261

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 262 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA 309


>gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246]
          Length = 280

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 131/283 (46%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  + +D           A+             D ++LI   + A  DA 
Sbjct: 1   MQFTKMHGLGNDYVYVDCVRQKPPADPAALARAVSDRHFGIGSDGLILICPSEKA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN------RDGSIS 117
           +R+ N DGSE + CGNG+RCV +F+  R        +   G  V   +      +   + 
Sbjct: 59  MRMFNADGSESEMCGNGVRCVAKFVHDRGIATKPRLKIETGRGVLTLDLEVRAGKAERVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPIL+   IP           +                VSMGNPHA+ + + D+  
Sbjct: 119 VNMGEPILESAKIPTTLPGAPPVNAKLVCAA---PTPWEVTCVSMGNPHAVIYCD-DVAK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L   G  L   P F   +N+   +V S   + +RTWERG G+T ACG+ AC+  VA  
Sbjct: 175 VELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGACSVCVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             H+T R +   + GG L +EW + ++ V+MTG A + + G+ 
Sbjct: 235 LTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPATEVFTGEW 277


>gi|126734339|ref|ZP_01750086.1| Diaminopimelate epimerase [Roseobacter sp. CCS2]
 gi|126717205|gb|EBA14069.1| Diaminopimelate epimerase [Roseobacter sp. CCS2]
          Length = 281

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 15/281 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           SS + F KM G+GN  +V+D RG    +      A++       FDQ+ ++   +    D
Sbjct: 15  SSFLPFMKMHGLGNDFVVVDERGITPRVDKAVAVAIADRHRGVGFDQLAVM--SETPDAD 72

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS+  +CGN  RC+ R +  +    + T +T RGIL AK+  +G  SV+MG
Sbjct: 73  VRLVFWNSDGSQAGACGNATRCIARHVMDQTGAAALTLKTERGILQAKDAGNGLTSVNMG 132

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW+ +PLA + D ++                P    MGNPH  FFV  D    DLA
Sbjct: 133 QPQLDWQHVPLAHAMDTLEL----------PIKGAPTATGMGNPHCTFFV-YDAEAIDLA 181

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP++ E  N+  A +     L +R WERGVG+T A GS++CA+ VA+     
Sbjct: 182 TKGAELEHHPLYPERTNVQFASLIGPNHLRMRVWERGVGITLASGSSSCATAVAAARRGL 241

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           T+R V++ + GG L I W D+  V+MTG     ++G+  + 
Sbjct: 242 TDRDVTIDLDGGTLQISWRDDG-VWMTGPTAHVFDGQWRLS 281


>gi|120609493|ref|YP_969171.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1]
 gi|166224234|sp|A1TKA9|DAPF_ACIAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120587957|gb|ABM31397.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1]
          Length = 292

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 133/288 (46%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC  R++  +      T   +T+ G++  +   DG ++VDMG 
Sbjct: 63  VIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTVDMGR 122

Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P  D   +P   S                +G      + +  VVSMGNPHA+  V  D+ 
Sbjct: 123 PRFDPAEVPFDASGLAPAARGAGQTWPLALGAGADAQVVDVAVVSMGNPHAVQLVG-DVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  H  F + VN    ++     + LR +ERG G T ACG+ ACA+V A 
Sbjct: 182 AAPVAHTGPLIEGHARFPQRVNAGYLQIEDRARVRLRVYERGAGETLACGTGACAAVAAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
             L   +  V V+  GG L I W  +    VFMTG A   +EG++DI 
Sbjct: 242 IRLGLLDARVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 289


>gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43]
          Length = 289

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 134/289 (46%), Gaps = 13/289 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+  R          E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDEASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            P+ +   +P         +   D     PVN    R   VVSMGNPHA+  V+ D    
Sbjct: 123 APVFEPARVPFDASGLEGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIVD-DAKAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G  + +HP F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A   
Sbjct: 181 PVLADGPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR 240

Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
             + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 241 RGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIELPA 289


>gi|221065121|ref|ZP_03541226.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1]
 gi|220710144|gb|EED65512.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1]
          Length = 296

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/294 (30%), Positives = 138/294 (46%), Gaps = 13/294 (4%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M   M + F KM+G GN  +V+D       +++     L+        DQI+ +      
Sbjct: 1   MCGIMQIRFTKMQGAGNDFVVLDETQARLGLSAAQYRYLANRHFGVGADQILTVRPAPSE 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116
            VD    I N DG EV+ CGNG RC  R++  R    +     +T+ G++  + + +G +
Sbjct: 61  GVDFEYVIHNADGGEVEQCGNGARCFARYVHDRGLTDKSVIRVQTLSGVIAPEIHANGRV 120

Query: 117 SVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +VDMG P LD   +P +             +    +             VSMGNPHA+  
Sbjct: 121 TVDMGAPQLDPVKVPFSTEGLQAETLGSAQKWPLTLDTPVQPATVWIAPVSMGNPHAVQL 180

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V+ D+    +   G L+  H  F + VN    ++ +   ++LR +ERG G T ACG+ AC
Sbjct: 181 VD-DVNAAAVEVHGPLIESHVRFPQRVNAGFMQIVNRGEVNLRVYERGAGETLACGTGAC 239

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           A+VVA       ++ V V   GG L IEW     + V MTG A+  +EG++DI 
Sbjct: 240 AAVVAGIGWGLLDQRVDVHTRGGLLTIEWAGAAQDRVRMTGPAEFVFEGQIDIP 293


>gi|296113697|ref|YP_003627635.1| diaminopimelate epimerase [Moraxella catarrhalis RH4]
 gi|295921391|gb|ADG61742.1| diaminopimelate epimerase [Moraxella catarrhalis RH4]
 gi|326562437|gb|EGE12756.1| diaminopimelate epimerase [Moraxella catarrhalis 7169]
 gi|326562806|gb|EGE13101.1| diaminopimelate epimerase [Moraxella catarrhalis 46P47B1]
 gi|326563473|gb|EGE13736.1| diaminopimelate epimerase [Moraxella catarrhalis 103P14B1]
 gi|326569145|gb|EGE19207.1| diaminopimelate epimerase [Moraxella catarrhalis BC1]
 gi|326570631|gb|EGE20667.1| diaminopimelate epimerase [Moraxella catarrhalis BC7]
 gi|326571338|gb|EGE21355.1| diaminopimelate epimerase [Moraxella catarrhalis BC8]
 gi|326572967|gb|EGE22946.1| diaminopimelate epimerase [Moraxella catarrhalis CO72]
 gi|326573783|gb|EGE23740.1| diaminopimelate epimerase [Moraxella catarrhalis 101P30B1]
 gi|326574795|gb|EGE24729.1| diaminopimelate epimerase [Moraxella catarrhalis O35E]
          Length = 299

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 13/299 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       +D  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC   F+ +R    ++    ET  GI++   NR G + VDMG
Sbjct: 62  YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP            + +           +V ++GNPHAI  V+D +   D+ 
Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPV--QLYVANIGNPHAIIKVDD-VLDADVD 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F E VN++  +V +   + +R +ERGVG T ACG+ ACASV        
Sbjct: 179 RLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREGW 238

Query: 242 TNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI-----KTGKWIKKNEDD 293
            +  V ++  + GG L I W D   + MTG     +EG           G  +  N DD
Sbjct: 239 LDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297


>gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786]
          Length = 293

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 134/287 (46%), Gaps = 11/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+             E   G+++     +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVIMLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S  +  R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + +HP F++ VN    +  S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
            + +  V+V   GG L I W     +N  + M G A   +EG +D+ 
Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDLS 288


>gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
 gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
          Length = 289

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVREHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|148261481|ref|YP_001235608.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5]
 gi|166224235|sp|A5G1F7|DAPF_ACICJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146403162|gb|ABQ31689.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5]
          Length = 277

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 103/275 (37%), Positives = 139/275 (50%), Gaps = 10/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G GN  +V+D R    ++   A   +         DQI+LI   +D    AF+R
Sbjct: 6   PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--RDDGAAAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGSE  +CGN  RCV   L      +  T  T  G+L A+      + VDMG P L
Sbjct: 64  ILNADGSESGACGNATRCVAALLAGETGARRLTIRTNAGLLPAEIKGPTLVEVDMGAPKL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA   D +              ++NP   SMGNPHA FFV+ DL H  + + G 
Sbjct: 124 GWEDIPLAEPADTLSLRLAL------GPVQNPAACSMGNPHATFFVD-DLTHLQIETIGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L    +F E  N+  AR+ + + + LR WERG GLT ACGS ACA++V +       R 
Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             ++M GG L + W D+ HV M G     +EG+LD
Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271


>gi|220931996|ref|YP_002508904.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
 gi|254767107|sp|B8CX90|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
          Length = 284

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 141/286 (49%), Gaps = 11/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  ++++     D + +  A        +   D ++++   +    D  +
Sbjct: 3   LSFTKMHGTGNDFIMVNGSNYPDLDFSKLARQLCRRHFSIGADGLIIVLPPESVEHDFRM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118
           RI N DGSE + CGNG+RC   +    +   R     ET+ GI+  +          I V
Sbjct: 63  RIFNADGSEAEMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSYNGDKSLIKV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P    + IP+    +      F +   N     N   VSMGNPH I FVE D+   
Sbjct: 123 NMGRPHFKSEEIPVNIEDELDYVKNFPLKIGNKKLNIN--CVSMGNPHTIIFVE-DVNQI 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            ++++G  +  +P+F +  N+   ++ S + + +R WERG G+T ACG+ ACASVVA   
Sbjct: 180 PVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVAGIK 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                  V+V + GG L IEW + + VFMTG A+  + GK+ I+ G
Sbjct: 240 NGLLKNMVTVHLPGGDLNIEWQEQD-VFMTGPAESVYTGKIVIQEG 284


>gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
 gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
          Length = 274

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 104/280 (37%), Positives = 135/280 (48%), Gaps = 13/280 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G+GN  +V+D R    ++T   I AL         DQ + +        D F
Sbjct: 2   MTGFLKMHGLGNDFVVVDERTHRHDLTPARIAALCDRHTGIGCDQFVTLRPACAEGADVF 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R  N DGSE  +CGN  RCV   +     R     +T  G+L A   R G ++VDMG P
Sbjct: 62  VRFFNADGSESGACGNASRCVADLVARESGRAQVGLQTRAGVLSATLVRPGVVTVDMGVP 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  +PLA + D +                +P  VSMGNPHA FF+       D    
Sbjct: 122 AQGWADVPLAEAMDTLHL----------PMAGDPAAVSMGNPHATFFLPA-PDGMDPCVA 170

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  HP+F +  N+  A VTS  S+ LR WERG GLT ACGS ACA+VV +      +
Sbjct: 171 GPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVRRGLVD 230

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           R  +V+M GG L I W  D+ HV MTG A   + G    +
Sbjct: 231 RTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGTFSPE 270


>gi|290477112|ref|YP_003470025.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004]
 gi|289176458|emb|CBJ83267.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004]
          Length = 274

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 130/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRRTGVGFDQLLIVEAPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQTGRMVLSITNDDQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P      +  +                 VVSMGNPH +  VE D+   ++  
Sbjct: 121 PDFEPQHVPF-----RAIKAEKTYIIRAIERTVLCGVVSMGNPHCVIQVE-DVDTAEVEI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   ++ +   + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLENHDRFPERANIGFMQIMNRSHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V + GG L I W      ++M G A   +EG + +
Sbjct: 235 NSQVRVDLPGGFLQICWDGPGKPLYMIGPATHVYEGTIHL 274


>gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
 gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91]
 gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
 gi|81608156|sp|Q63YH7|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
 gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
          Length = 289

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 132/288 (45%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  +   P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
 gi|229813250|sp|B1XP39|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
          Length = 281

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 11/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G+GN  +++D R     +     AI           D ++     Q A  D  
Sbjct: 3   LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQ-AGADYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ RF+          K+++  T+ G++  +   D  + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEPIL    IP        +    +              VSMGNPH I FVE D+    
Sbjct: 122 MGEPILTATDIPTTLK--DSNGQAVNQPLEVAGKTWMVTCVSMGNPHCITFVE-DVAAIA 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP F + +N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              +R  +V++ GG L IEW   +NH++MTG A   ++G++ +
Sbjct: 239 GHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281


>gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
 gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
 gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
 gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
 gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
 gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
 gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
 gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
 gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98]
 gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14]
 gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9]
 gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210]
 gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894]
 gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177]
 gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112]
 gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215]
 gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
 gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
 gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
 gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
 gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
 gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH]
 gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU]
 gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
 gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
 gi|81603782|sp|Q62EZ3|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224247|sp|A3MRQ6|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224248|sp|A2S862|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224249|sp|A1V7L3|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224250|sp|A3NQ71|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
 gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
 gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
 gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
 gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
 gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
 gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH]
 gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU]
 gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
 gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
 gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
 gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
 gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
 gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
 gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
 gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
 gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
          Length = 289

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|326563211|gb|EGE13479.1| diaminopimelate epimerase [Moraxella catarrhalis 12P80B1]
          Length = 299

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 13/299 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+      +T + I  L+       FDQ++++       +D  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC   F+ +R    ++    ET  GI++   NR G + VDMG
Sbjct: 62  YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP            + +           +V ++GNPHAI  V+D +   D+ 
Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPV--QLYVANIGNPHAIIKVDD-VLDADVD 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  H  F E VN++  +V +   + +R +ERGVG T ACG+ ACASV        
Sbjct: 179 RLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREGW 238

Query: 242 TNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI-----KTGKWIKKNEDD 293
            +  V ++  + GG L I W D   + MTG     +EG           G  +  N DD
Sbjct: 239 LDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297


>gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 309

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+       VD  
Sbjct: 23  LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFK 82

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 83  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 142

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   +    + +              R    V+MGNPHA+  V+ D   Y 
Sbjct: 143 APVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVD-DAEAYP 201

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+  H  F E VN    +V S   + LR +ER  G T ACG+ ACA+V A    
Sbjct: 202 VLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIRR 261

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 262 GLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 309


>gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
 gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
          Length = 280

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 137/283 (48%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VDAF 63
           + F KM+  GN  + +D      +        +S        D ++LI    D    D  
Sbjct: 1   MRFTKMQAAGNDYVYMDTLKAPISSPEALARRISDRHFGVGSDGLILICPPSDPGEADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SIS 117
           +R+ N DGSE + CGNG+RCV    +      ++    ET+ G+L  + +  G    +++
Sbjct: 61  MRMFNADGSEAEMCGNGIRCVGKYVYDNGHTDKEQVRIETLAGVLTLRLHVSGEKVETVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K IP++   +        +       + N   VSMGNPHA+ F+   + +
Sbjct: 121 VDMGEPRLAPKDIPVSGPGEDFINRPLRVQGR----VWNVTAVSMGNPHAVVFMHG-IDN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL+  G     HP+F    N     V     L +R WERG G T ACG+ ACASVVA+ 
Sbjct: 176 LDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGACASVVAAV 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               T R V +K+LGG L IEW +  NHVFMTG A   + G+ 
Sbjct: 236 LTGNTERKVRMKLLGGELDIEWDEATNHVFMTGGAVTVFTGEW 278


>gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Lyngbya majuscula 3L]
 gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Lyngbya majuscula 3L]
          Length = 281

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R        +  A+     +     D ++     Q+   D  
Sbjct: 1   MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQE-GTDYT 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+ +FL         T     T+ G+++ +   DG + VDM
Sbjct: 60  MRIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP   +    D+   +        L     VSMGNPH I FVE D     L
Sbjct: 120 GMPQLSAAQIPTVLAE--ADQKVINTPIEIADKLWEVTCVSMGNPHCITFVE-DADAIPL 176

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L   H +F +  N    +V   + L +R WERG G T ACG+ ACASVVA     
Sbjct: 177 ETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLTQ 236

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           K++R  +V++ GG L IEW + +  V+MTG A++ + GKL
Sbjct: 237 KSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKL 276


>gi|83595884|gb|ABC25246.1| diaminopimelate epimerase [uncultured marine bacterium Ant4D3]
          Length = 276

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 145/281 (51%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ FAKM G+GN  +V+D+     +++++ I  L   +    FDQ++L+   Q   VD  
Sbjct: 2   LLRFAKMHGLGNDFMVVDLISQRVHLSAEQIRCLGDRNTGVGFDQLLLVETPQSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+  +    ++    +T  G +  K  +D  + VDMG
Sbjct: 62  YRIFNSDGTEVEHCGNGARCFARFVHDQRLTGKRDIAVQTSNGRMGLKMLKDHWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP+L   L+P      +    R      ++       VVSMGNPHA+  V+ D+    + 
Sbjct: 122 EPVLLPSLVPFDAPA-QAPSYRLEHNGQSYTIG----VVSMGNPHAVIVVD-DVASAPVV 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L +HP F    N+   ++ +  ++ LR +ERGVG T ACG+ ACA+VVA      
Sbjct: 176 ELGTKLEQHPRFPNKANIGFMQIINRNTIKLRVFERGVGETKACGTGACAAVVAGQQQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
               V+ ++ GG L I+W     H+ M G     +EG++ +
Sbjct: 236 LGTNVTAQLTGGDLTIDWQGPGHHLLMNGPTTHVYEGQIKL 276


>gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
 gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
          Length = 289

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDDADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+       + S   E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 289

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+       VD  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+     +P   +    + +              R    V+MGNPHA+  V+ D   Y 
Sbjct: 123 APVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVD-DAEAYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+  H  F E VN    +V S   + LR +ER  G T ACG+ ACA+V A    
Sbjct: 182 VLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 242 GLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 289


>gi|302381573|ref|YP_003817396.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192201|gb|ADK99772.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264]
          Length = 277

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 107/281 (38%), Positives = 156/281 (55%), Gaps = 7/281 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           MQ+S   F KM G GN  +V++         +D + AL+       FDQ++ I     A 
Sbjct: 1   MQAST-PFVKMNGAGNDFVVVNALETPFTPDADRVRALADRRTGEGFDQLIAIEPSDRA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DAF+R+ N DG  V++CGN +RCV   L       S T +T+ G  +A+      ++VD
Sbjct: 59  -DAFMRVWNADGGVVETCGNALRCVGWMLMQANGTDSATIDTLGGPAIARRAGPERVTVD 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P LDW+ IPLA + D    +   IGP++   +  P  VSMGNPH +FF +  L    
Sbjct: 118 MGAPRLDWREIPLAEAMDTRGIE-LQIGPIDDPVMHTPGAVSMGNPHVVFFTDR-LDDVF 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+++  HP+F +GVN+  A V + + + LR WERG GLT ACG+ ACA++VA+   
Sbjct: 176 VTGAGSMIEHHPLFPQGVNVGFAHVLAPDRIRLRVWERGAGLTRACGTGACAALVAASRR 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             T R+ +V + GG L I+W +   HV MTG  + E  G+L
Sbjct: 236 GLTGRSATVVVDGGELDIDWDETTGHVLMTGPVEIERTGRL 276


>gi|260219996|emb|CBA27092.1| Diaminopimelate epimerase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 302

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 136/292 (46%), Gaps = 12/292 (4%)

Query: 3   SSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60
             M + F KM+G GN  +V+D       +T      L         DQI+ +       +
Sbjct: 12  ERMRIQFTKMQGAGNDFVVLDETKGRLGLTPAHYRFLGDRHFGVGADQILTVRPSPAEGI 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D    I N DG+EV+ CGNG RC  RF+  +    +     +T++G++      DG ++V
Sbjct: 72  DFEYVIHNADGNEVEQCGNGSRCFARFVRDQGLTGKDRIRVKTMKGVIEPLLTPDGRVTV 131

Query: 119 DMGEPILDWKLIPLA------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           DMG P+ +   IP        ++                        VSMGNPHA+  V 
Sbjct: 132 DMGAPVFNPADIPFDDSGLSLQAMGSWGNWPLAPVESAQAAPLLVATVSMGNPHAVTLV- 190

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+    +A+ G  +  +P F++GVN+   +V S   + LR +ERGVG T ACG+ ACA+
Sbjct: 191 ADVDAAPVATLGPQVQANPRFTQGVNVGFLQVVSRSQVRLRVYERGVGETLACGTGACAA 250

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283
           VVA   L   +  V V+  GG L I W      VFMTG A   + G++++  
Sbjct: 251 VVAGIRLGLLDARVDVQTRGGMLTIAWEGMGASVFMTGPATTVFRGEIELPE 302


>gi|94676850|ref|YP_588594.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|167012033|sp|Q1LTX0|DAPF_BAUCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|94220000|gb|ABF14159.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 274

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 10/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D+   +  ++   I  L+       FDQ++ +    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDVVTQNVYLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC+  F+  +    ++     T    +V     +  + V+MG 
Sbjct: 61  RIFNADGSEVTQCGNGARCLAHFVRMKKLTNKREIYISTQTSRMVLTIIENNMVRVNMGV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP      ++++        N++F     +VS+GNPH I  V +++    ++ 
Sbjct: 121 PKFELPQIPF--DMHQIEKKEILYLAKNYIF---GGIVSIGNPHCIMIV-NNVDSAQVSI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  FSE  N+   +V + E + LR +ERGVG T ACGS ACA+V     L   
Sbjct: 175 IGPILEIHKYFSERTNVGFMQVINREQVLLRVYERGVGETQACGSGACAAVAIGIRLGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
              V V + GG L+I W      ++MTG A   ++G ++
Sbjct: 235 AEQVQVALPGGKLVIYWRGPGQSLYMTGPAVHIYDGFIN 273


>gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola sp. JR]
 gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR]
          Length = 277

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  ++I+    ++  N    A+   +       D ++ I   + A  D  
Sbjct: 1   MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPSETA--DIQ 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----IS 117
           +RI N DGSE + CGN +RC  R+L      K  T   ET+ GI + +   + +    + 
Sbjct: 59  MRIFNPDGSEPEMCGNAIRCFARYLYDHGIVKKQTIRVETLAGIRIPRIIENPAGEALVE 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L+   IP+     K+  +   +    +    N   VSMGNPH + FV+ +   
Sbjct: 119 VDMGEPELERGRIPMLGGPGKVVAEPLPVNGSTY----NVTCVSMGNPHCVIFVD-NAED 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +A+ G  +  H  F    N+   +V +   + +R WERG G+T ACG+ ACAS VA+ 
Sbjct: 174 YPVAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASAVAAH 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R V V + GG L I W  +NHV+M G A   ++G 
Sbjct: 234 LNGFTGREVIVHLDGGDLFIRWAQDNHVYMMGPAAYVFKGT 274


>gi|156972657|ref|YP_001443564.1| diaminopimelate epimerase [Vibrio harveyi ATCC BAA-1116]
 gi|166225762|sp|A7N0W0|DAPF_VIBHB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|156524251|gb|ABU69337.1| hypothetical protein VIBHAR_00309 [Vibrio harveyi ATCC BAA-1116]
          Length = 276

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNRYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG A   ++G+L
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274


>gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
 gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
 gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
 gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
          Length = 289

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 141/288 (48%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T+  + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+   + +P  A   D     R  + P+      R    VSMGNPHA+  V+ D   Y 
Sbjct: 123 APVFAPEQVPFDASGLDGRTEGRDTLWPLEIGGRTRWISTVSMGNPHAVQVVD-DAEAYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLDEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     ++  + M G A   +EG++D+  
Sbjct: 242 GLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289


>gi|261400446|ref|ZP_05986571.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970]
 gi|269209897|gb|EEZ76352.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970]
          Length = 283

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 142/284 (50%), Gaps = 9/284 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           M++  + F KM G+GN  +VID            I   +       FDQ++++   +   
Sbjct: 1   MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEG 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           VD   RI N DGSEV+ CGNG RC  RF+T +    +K    ET +G++  K + +G ++
Sbjct: 59  VDFRYRIFNADGSEVEQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P      IP      + D D    G      ++    V+MGNPHA+  V+ D+  
Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G L+  H  F E VN+   +V     + LR +ERGVG T ACG+ ACA+V A  
Sbjct: 177 APVRETGPLIEAHRQFPERVNVGFMQVVGRTEIRLRVFERGVGETQACGTGACAAVAAGI 236

Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   +  + +   + GG L IEW     V MTG A+  +EG+L
Sbjct: 237 RLGLLDEGKTIEAVLPGGTLYIEWVRGGDVMMTGPAETVFEGEL 280


>gi|330818644|ref|YP_004362349.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
 gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
          Length = 288

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 86/286 (30%), Positives = 136/286 (47%), Gaps = 10/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T + + AL+        DQ++L+       VD   
Sbjct: 3   LPFTKMQGAGNDFVVLDGTAGDLGLTPERVRALADRHFGIGADQLLLVERPSLDGVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+  +      T   +   G++      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRDKGLTDKTTVRVQVKHGVITLSMQDNGEVVVDMGS 122

Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P   +    + D          +   R   VVSMGNPHA+  V+ D   + +
Sbjct: 123 PVFEPARVPFDVAGLAGRRDGADTVYPLEVNGATRWISVVSMGNPHAVQLVD-DAEAFAV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A     
Sbjct: 182 LEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
             +  V+V+  GG L I W         ++M G A   ++G +++ 
Sbjct: 242 LLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIELA 287


>gi|149186852|ref|ZP_01865162.1| diaminopimelate epimerase [Erythrobacter sp. SD-21]
 gi|148829519|gb|EDL47960.1| diaminopimelate epimerase [Erythrobacter sp. SD-21]
          Length = 273

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 101/283 (35%), Positives = 138/283 (48%), Gaps = 18/283 (6%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQD 57
           M+ +M V F KM G+GN  +V+D R      +      A++        DQ++L+     
Sbjct: 1   MRGTMRVPFIKMHGLGNDFVVLDARETALPVLDKGRAAAIADRHEGIGCDQLILLEPS-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            S D  +RI N DGSEV +CGN  R V        + +        G L++    DG   
Sbjct: 59  GSADFRMRIFNHDGSEVGACGNATRAVALLHGVEARIE------TAGGLLSASPSDGGAR 112

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P  DW  IPLA   D +        PV    L NP  V++GNPH IFFVE D   
Sbjct: 113 VDMGTPRFDWDAIPLAYPMDTL------SMPVGWEMLENPGAVNVGNPHVIFFVE-DTNA 165

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  + K P+F E VN+++A + S   + LR WERG GLT ACG+ ACA+ V + 
Sbjct: 166 VPLDRIGPEIEKDPLFPERVNVNVATIESRSRIRLRVWERGAGLTRACGTGACATAVRAM 225

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                +  V+V + GG L I W     + MTG A + + G  +
Sbjct: 226 RRKLVDSPVTVALPGGELEIAWEPGGTIQMTGPATEAFRGSFE 268


>gi|209693749|ref|YP_002261677.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238]
 gi|229807485|sp|B6EP85|DAPF_ALISL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|208007700|emb|CAQ77811.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238]
          Length = 276

 Score =  228 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 95/279 (34%), Positives = 133/279 (47%), Gaps = 10/279 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DG+EV+ CGNG RC  RF+  +      T    T +G +  K   D  I+V+MGEP
Sbjct: 64  IFNSDGTEVEQCGNGARCFARFVRMKGLTNRTTILVSTKKGKMSLKVEDDDQITVNMGEP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ ++       L     VSMGNPH    V DD+ +YD+  +
Sbjct: 124 QFEPNKIPFKA----TQAEKTYLLRAEDKTLFCG-AVSMGNPHC-VTVVDDVDNYDVDKY 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  H  F E VN     + S   + LR +ERG G T ACGS ACA+V          
Sbjct: 178 GPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELLE 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             V V + GG L I W      +FMTG A   ++G+L I
Sbjct: 238 EDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQLSI 276


>gi|326404965|ref|YP_004285047.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301]
 gi|325051827|dbj|BAJ82165.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301]
          Length = 277

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/275 (37%), Positives = 137/275 (49%), Gaps = 10/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G GN  +V+D R    ++   A   +         DQI+LI    D    AF+R
Sbjct: 6   PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIEP--DDGAAAFMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGSE  +CGN  RCV   L      +     T  G+L A+      + VDMG P L
Sbjct: 64  ILNADGSESGACGNATRCVAALLAGETGARRLAIRTNAGLLPAEIKGPTLVEVDMGAPKL 123

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA   D +              ++NP   SMGNPHA FFV+ DL H  + + G 
Sbjct: 124 GWEDIPLAEPADTLSLRLAL------GPVQNPAACSMGNPHATFFVD-DLTHLQIETIGP 176

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L    +F E  N+  AR+ + + + LR WERG GLT ACGS ACA++V +       R 
Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             ++M GG L + W D+ HV M G     +EG+LD
Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271


>gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 7/277 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID      + T      L+        DQ++++   Q A VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  V+F+T +    +++   ET+ G++  +   +G I+VDMG PIL  
Sbjct: 61  DGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTP 120

Query: 128 KLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           + +P   S      +                  V+SMGNPHA+  V  D  H  +   G 
Sbjct: 121 EDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVV-ADADHAPVREDGV 179

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP F + VN    ++     + LR +ERG G T ACG+ ACA+VV+          
Sbjct: 180 LIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRGLLASP 239

Query: 246 VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           + V+  GG L I W  +N  V +TG A   +EG++++
Sbjct: 240 IKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276


>gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 286

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 144/284 (50%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F KMEGIGN  + ID       ++ + I  LS        D ++ I +         +
Sbjct: 9   INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--FQM 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRDGSIS 117
            + N DGS  + CGNG+RCV +F+      K +  T ET +G+L          +   ++
Sbjct: 67  DMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVT 126

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL   L+P+    D+   ++            +   VSMGNPH + +V+ D   
Sbjct: 127 VDMGEPILKPSLVPIVWKGDEPVINQVIE---VQGKQYHFTAVSMGNPHCVIYVD-DADD 182

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  HP F   VN+    +   + L  RTWERG G T ACG+ ACA  VAS 
Sbjct: 183 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 242

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              KT R+V + + GG L IEW +N  VFMTG AK+ + G+++I
Sbjct: 243 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 286


>gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601]
 gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601]
          Length = 292

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG +VQ CGNG RC  R++  +    +     +T+ G++  +   DG ++VDMG 
Sbjct: 63  LIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDMGR 122

Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P+LD   +P             + +    +             VSMGNPHA+  V+ D+ 
Sbjct: 123 PVLDPARLPFDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQLVD-DVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F + VN    +V     + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 182 SAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIKT 283
             L   +  V V   GG L I W     + VFMTG A   +EG++DI  
Sbjct: 242 IGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIPE 290


>gi|153835736|ref|ZP_01988403.1| diaminopimelate epimerase [Vibrio harveyi HY01]
 gi|148867605|gb|EDL66907.1| diaminopimelate epimerase [Vibrio harveyi HY01]
          Length = 276

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG A   ++G+L
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274


>gi|89902213|ref|YP_524684.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118]
 gi|122478434|sp|Q21SV0|DAPF_RHOFD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|89346950|gb|ABD71153.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118]
          Length = 291

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 134/287 (46%), Gaps = 11/287 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L+        DQI+ +       +D   
Sbjct: 3   IPFTKMQGAGNDFVVLDETQGRFGLSTAHYRLLADRHFGVGADQILTVRPSPAPGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG+EV+ CGNG RC  RF+  +    + +   +T  G++  + N DG ++V+MG 
Sbjct: 63  LIHNADGAEVEQCGNGARCFARFVRDQGLTAKDAIRVQTRGGVIEPQLNPDGRVTVNMGA 122

Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P+ +   IP   +           +    +    H       VVSMGNPHA+  V+ D+ 
Sbjct: 123 PVFELAEIPFDATGLQPQTSGLWKKWPLALVDSGHATTVYVAVVSMGNPHAVQVVD-DVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G L+  H  F + VN    ++     + LR +ERG G T ACGS ACA+VVA 
Sbjct: 182 TAPVRLQGPLIEHHASFPKRVNAGFMQIVDRSHIRLRVYERGTGETLACGSGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
             L   +  V V+  GG L I W      V MTG A   + G++++ 
Sbjct: 242 IRLGLLDDTVHVQTHGGTLTISWAGAAAPVLMTGPATPVFHGEINLP 288


>gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis]
          Length = 303

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 138/287 (48%), Gaps = 13/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V FAK +G+GN  +++D R   + +     A+     +     D ++     ++   D  
Sbjct: 19  VKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFGIGGDGVIFALPSEN-GTDYS 77

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+ RF+    + +        T+ G++      DG + VDM
Sbjct: 78  MRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHTLAGLIQPALLPDGQVCVDM 137

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175
           GEPIL    +P      + +        V+         VSMGNPHAI F   D     +
Sbjct: 138 GEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKE-WLMTCVSMGNPHAITFGLADGSSIKV 196

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL   G     +P+F    N     V S   + +  WERG G T ACG+ ACA+VVA
Sbjct: 197 DSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWERGAGATLACGTGACATVVA 256

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                 T+R+  V + GG L IEW + +NH++MTG A+  + G +D+
Sbjct: 257 GVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFAGSVDV 303


>gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
 gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
          Length = 279

 Score =  228 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 148/282 (52%), Gaps = 13/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  ++++       +    A            D ++LI   +    D  +
Sbjct: 1   MEFTKMHGLGNDFVMVNGFNEDIADPNQLAEAICDRHFGVGADGLVLILPSKQEEADFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDGSISV 118
           RI N DGSE + CGN +RC  ++L  R   ++     ET+ GI+    + ++++  ++ V
Sbjct: 61  RIFNPDGSEPEMCGNAIRCFGKYLYDRDLTEKTKIRVETLAGIIVPELIIEKDQVEAVQV 120

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P L    IP+   + DK+ +++  +    +        VSMGNPH + FV+ D   
Sbjct: 121 DMGQPGLGSTDIPITGVNKDKVIKEKLEVENEEYEI----TAVSMGNPHTVIFVD-DADD 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G  + +HP F E  N+    V +   + +R WERG G+T ACG+ AC S VAS 
Sbjct: 176 FPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACGSTVASI 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               TN+ V V +LGG L IEW +++HV+MTG A++ + G+ 
Sbjct: 236 LNDYTNQKVEVHLLGGDLTIEWTEDSHVYMTGPAEEVFVGEW 277


>gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7]
 gi|254767113|sp|A6VFK8|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7]
          Length = 277

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/284 (33%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDATSQKIENPNEISRFVSDRHFGIGSDGLVLILPSEIA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGN +RCV +F+  +        T ET+ GI V +   +      + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENDKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +             N   VSMGNPHAI ++E ++  +
Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKDY----CYNFTCVSMGNPHAITYIE-NVSEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA +VAS  
Sbjct: 174 PLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L IEW++ +NH++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277


>gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
 gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
          Length = 283

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 13/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V++       I       +         D I+L+        D  +
Sbjct: 4   MKFTKMHGLGNDFIVVNGFKEDVRIIFKKAEKICDRHVGIGADGILLVLPSDK--CDLKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRG----ILVAKENRDGSISV 118
           RIIN DGSE   CGNG+RC  R+  SR    + S T ET+ G     ++ K++R  S+ V
Sbjct: 62  RIINSDGSEADMCGNGIRCFARYAFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVRV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG   L  K IP+A +    + +   +       +     VSMGNPH + FV+ D+  +
Sbjct: 122 DMGCYSLQKKDIPVAGN---PNEEAVDLEISVDDRVFKFTGVSMGNPHCVIFVD-DVESF 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  FG ++ +HP+F +  N+        + L +R WERG GLT ACG+ ACAS VA+  
Sbjct: 178 PVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASAVAAYK 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                  V+V + GG L IE   N  V+MTG A + + G +D+   
Sbjct: 238 KGIVGPKVTVSLPGGDLFIEIEKNGRVYMTGPAVEVFSGYIDLSAL 283


>gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226724214|sp|B0SC36|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 280

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 144/284 (50%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F KMEGIGN  + ID       ++ + I  LS        D ++ I +         +
Sbjct: 3   INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--FQM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRDGSIS 117
            + N DGS  + CGNG+RCV +F+      K +  T ET +G+L          +   ++
Sbjct: 61  DMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVT 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL   L+P+    D+   ++            +   VSMGNPH + +V+ D   
Sbjct: 121 VDMGEPILKPSLVPIVWKGDEPVINQVIE---VQGKQYHFTAVSMGNPHCVIYVD-DADD 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G ++  HP F   VN+    +   + L  RTWERG G T ACG+ ACA  VAS 
Sbjct: 177 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              KT R+V + + GG L IEW +N  VFMTG AK+ + G+++I
Sbjct: 237 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 280


>gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
 gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
          Length = 292

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 134/289 (46%), Gaps = 12/289 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG +VQ CGNG RC  R++  +    +     +T+ G++  +   DG ++VDMG 
Sbjct: 63  LIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDMGR 122

Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P+LD   +P             + +    +             VSMGNPHA+  V+ D+ 
Sbjct: 123 PVLDPARLPFDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQLVD-DVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F + VN    +V     + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 182 SAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVVAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIKT 283
             L   +  V V   GG L I W     + VFMTG A   +EG++DI  
Sbjct: 242 IGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIPE 290


>gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
 gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
          Length = 279

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R      IT + AI           D ++     Q    D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRCDLTPLITPEMAIRMCDRHFGIGADGVIFALPGQK-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+  FLT        +  +   T+ G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSKDYYLIHTLAGVIRPQLTDDGQVRVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L  + IP   +          +   N     +   VSMGNPH I FVE D+    
Sbjct: 122 MGSPRLLAQEIPTTLAPGNSKIINLPLEIGN--QTWHITCVSMGNPHCITFVE-DVASIP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G     HP+F +  N    +V +   L +R WERG G+T ACG+ ACAS+VA    
Sbjct: 179 LEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLVAGVLN 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  +R   +++ GG L IEW + +  ++MTG A++ + GK+
Sbjct: 239 NLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279


>gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
 gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
          Length = 287

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 139/281 (49%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I     A+           D ++      D + D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+T    +      +   T  G++  +   DG + VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP   S +  +     +       + +   VSMGNPH I FV+ D+    
Sbjct: 122 MGLPRLLAAEIPTTLSEN--NLKVIDVPLEVAGQVLSVTCVSMGNPHCITFVD-DVASVP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   HP F E  N     V   + + +R WERG G+T ACG+ ACASVVA    
Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            + +R V+V++ GG L IEW   +  ++MTG A+  ++G+L
Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279


>gi|269961536|ref|ZP_06175899.1| diaminopimelate epimerase [Vibrio harveyi 1DA3]
 gi|269833765|gb|EEZ87861.1| diaminopimelate epimerase [Vibrio harveyi 1DA3]
          Length = 276

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG A   ++G+L
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274


>gi|260767553|ref|ZP_05876489.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972]
 gi|260617453|gb|EEX42636.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972]
 gi|315178746|gb|ADT85660.1| diaminopimelate epimerase [Vibrio furnissii NCTC 11218]
          Length = 276

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  ++       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRMADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V     D  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLIVEDDDQITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I  V    L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPSKIPF----RAKQAEKTYIMRVEEQTLFCG-AVSMGNPHV-VTVVDDVTTANVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V +   ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V+V + GG L I W      ++MTG A   ++G+L
Sbjct: 238 DTVTVHLPGGDLEISWQGPGKPLYMTGPATHVFDGQL 274


>gi|260431874|ref|ZP_05785845.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415702|gb|EEX08961.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 277

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 139/281 (49%), Gaps = 16/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +++D R     IT      +        FDQ+ +I + +    DA +
Sbjct: 9   LPFMKMHGLGNDFVIVDARAHPVQITPALARGIGHRQFGVGFDQLAVIVNGES---DAHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +   T  T  G L A++  DG  SV+MG P 
Sbjct: 66  VFYNADGSISATCGNATRCIARFLMQESGKSELTLSTSHGTLQARDAGDGLTSVNMGHPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA   D ++                P    MGNPH  FFVE D     L  FG
Sbjct: 126 LDWADIPLAEEVDTLEL----------PIEGGPVATGMGNPHCTFFVE-DAEAIPLEEFG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A++   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 ARYEHHPLYPQRTNVQVAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            V +++ GG + I+W ++  V+MTG     + G L  +  +
Sbjct: 235 KVQIELDGGTIWIDWREDG-VWMTGPTCHVFSGTLTPEFLE 274


>gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
 gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
          Length = 280

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 128/283 (45%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           + F KM GIGN  + +++      +   D    +S        D ++LI   +    DA 
Sbjct: 1   MRFTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSI 116
           +++ N DGSE + CGNG+RCV +++      K        G  V               +
Sbjct: 59  MQMFNADGSESEMCGNGVRCVAKYVYDHGIAKKPELRIETGRGVLTLQMFAGSSGKAERV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG PIL    IP A   D        +G        +   VSMGNPH + FV+ +L 
Sbjct: 119 RVNMGTPILKSADIPTALPGDPPVNQPLVVGDK----TISVTCVSMGNPHCVTFVD-ELT 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +   G  +  H  F   VN   A+V S   + LR WERG G T ACG+ ACA++VA 
Sbjct: 174 DAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGACATLVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               +T+    + + GG L IEW D   VFMTG A + + G+ 
Sbjct: 234 VLSGRTDHQALIHLPGGDLEIEWPDEKEVFMTGPATEVFTGEW 276


>gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6]
 gi|254767112|sp|A9AB27|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6]
          Length = 277

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 141/284 (49%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISRFVSDRHFGIGSDGLVLILPSDLA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGN +RCV +F+  +        T ET+ GI V +   +      + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENDKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +             N   VS+GNPHAI ++E ++  +
Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKDY----CYNFTCVSIGNPHAITYIE-NVEEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA +VAS  
Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L IEW++ +NH++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277


>gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666]
 gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666]
          Length = 299

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 17/300 (5%)

Query: 1   MQSS-----MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHD 54
           M+S+     ++ F KM+G GN  +++D      N+++     L+        DQI+ +  
Sbjct: 1   MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRP 60

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR 112
                +D    I N DG EV+ CGNG RC VRF+  +    + +   +T+ G++  +   
Sbjct: 61  SPGEGIDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQA 120

Query: 113 DGSISVDMGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
           DG ++VDMG P+ +   IP       A+     ++    +         +  V+SMGNPH
Sbjct: 121 DGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPH 180

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           A+  V+ D+    +   G L+  H  F + VN    +V S   + LR +ERG G T ACG
Sbjct: 181 AVQLVD-DVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACG 239

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKTG 284
           + ACA+VVA       +  V V+  GG L IEW    +  V MTG A   +E ++++   
Sbjct: 240 TGACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL 299


>gi|311109401|ref|YP_003982254.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8]
 gi|310764090|gb|ADP19539.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8]
          Length = 303

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 131/290 (45%), Gaps = 12/290 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D      ++T +   AL         DQI+L+        D   R
Sbjct: 10  NFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     E   GILV  +  D  ++VDMG  
Sbjct: 70  IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDQGDDEQVTVDMGST 129

Query: 124 ILDWKLIPLARSF-------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
             +   +P   +             +     P           V++ NPHA+  V+ D+ 
Sbjct: 130 RFEPSALPFDTAGLASRVQGQDTLWELELDAPAGLPRTVALSAVAISNPHAVQVVD-DVD 188

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F   VN    ++    ++ LR +ERG G T ACG+ ACA+V A 
Sbjct: 189 TAPVAILGPLIETHPRFPRRVNAGFMQIVDRNNIRLRVFERGAGETLACGTGACAAVAAG 248

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
                 +  V V+  GG L + W+    + MTG A+  + G++DI    +
Sbjct: 249 IRRGLLDSPVRVQARGGVLTVAWNGEQ-LRMTGPAESVFTGQVDIDKLVF 297


>gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4]
          Length = 289

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 130/288 (45%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+             E   G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  + + P F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V V   GG L I W     +   + M G A   +EG +D+  
Sbjct: 242 GQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289


>gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
 gi|122959296|sp|Q0VM18|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
          Length = 281

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 131/285 (45%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F KM G+GN  +VID            + +D I  L+       FDQ++++   Q   
Sbjct: 3   LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQ-GD 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D   RI+N DGSEV  CGNG RC  RF+  +    +KS   ET  G +      D  I+
Sbjct: 62  ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKKSIRVETAAGQMTLSVTDDDQIT 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P      IP+    +  +         +     +   V +GNPH    VE ++  
Sbjct: 122 VDMGAPRWAPDAIPMTAKAEADNYFLV-----SGTQAWDVGAVGLGNPHCTLLVE-NVDT 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G LL  H  F E  N+   ++ S   + LR +ERG G T ACGS ACA+VV   
Sbjct: 176 APVDTVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                +  V+V + GG L + +     + MTG A   ++G ++I 
Sbjct: 236 RRDWLDDTVTVHLPGGTLHVCYDGQGGIQMTGPASHVYDGAIEIA 280


>gi|159045768|ref|YP_001534562.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12]
 gi|157913528|gb|ABV94961.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12]
          Length = 282

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 139/278 (50%), Gaps = 15/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     ++   + AL+       FDQ+ +I        DA +
Sbjct: 12  LPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPA--PEADAHL 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R +       +    T RG+L+A++  DG   V+MG+P 
Sbjct: 70  TFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  +PLA + D ++                P    MGNPH  FFV  D     L +FG
Sbjct: 130 TLWSEVPLAEAMDTLEL----------PIEGTPTATGMGNPHCTFFV-ADAEAIPLDTFG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A++   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 179 PRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGR 238

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              + + GG L I+W ++  V+MTG     +EG+L  +
Sbjct: 239 KTRIDLDGGTLWIDWREDG-VWMTGPNMTVFEGRLTPQ 275


>gi|71064780|ref|YP_263507.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4]
 gi|123649755|sp|Q4FV85|DAPF_PSYA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71037765|gb|AAZ18073.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4]
          Length = 295

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+     ++T D +  L        FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+ +R    ++    ET  GI+    +  G + VDMG
Sbjct: 62  YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDHYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP         ++ +H+           +V +MGNPHA+  V+ D+   D+ 
Sbjct: 122 KPKFEPSEIPFTPRATTKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKVD-DVLDADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  +  HP F E VN+   +V +   + LR +ERGVG T ACG+ ACA+V        
Sbjct: 179 SLGRAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVAIGIREGW 238

Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +    V  ++ GG ++I+W     V MTG     +EG  
Sbjct: 239 LDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVF 278


>gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2]
 gi|74554659|sp|Q6LYS1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2]
          Length = 277

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGN +RCV +F+  +        T ET+ GI V +   +      + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +             N   VSMGNPHAI ++E ++  +
Sbjct: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKDY----CYNFTCVSMGNPHAITYIE-NVDEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F    N+    +    ++ +R WERG G T ACG+ ACA + AS  
Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L IEW++ + H++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277


>gi|260574289|ref|ZP_05842294.1| diaminopimelate epimerase [Rhodobacter sp. SW2]
 gi|259023755|gb|EEW27046.1| diaminopimelate epimerase [Rhodobacter sp. SW2]
          Length = 279

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 100/272 (36%), Positives = 135/272 (49%), Gaps = 15/272 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID RG     T     AL        FDQ+  I D   A  D  +
Sbjct: 10  LAFMKMHGLGNDFVVIDSRGRGAVTTPALARALGDRHRGVGFDQLAEIRDS--AEADFAL 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV  F+     + + T  T RG L A    DG +SV+MG P 
Sbjct: 68  DFWNSDGSRAGACGNATRCVAEFVMRGSGKAAVTLTTTRGHLQAVRRADGLVSVNMGAPQ 127

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLAR  D +                +P  V MGNPH +FFV  +    ++A  G
Sbjct: 128 LDWAEVPLARPADTLHL----------PISGDPVAVGMGNPHCVFFVG-NAETVNVADLG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L    P+F +  N+  A +T  + L +R WERG G+T ACGS ACA+ VA+     T R
Sbjct: 177 ALFETDPLFPQKTNVEFATLTGPDRLRMRVWERGAGITLACGSGACATAVAAHRRGLTGR 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            V++ + GG L I+W  +  V+MTG     ++
Sbjct: 237 KVTLDLDGGALEIDWRSDG-VWMTGPTAHVFD 267


>gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
 gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
          Length = 289

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 132/288 (45%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++L+        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+       + S   E    ++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHSVITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S     R+          +   R   VVSMGNPHA+  V+ D   + 
Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + + P F + VN    ++ S   ++LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            + +  V+V   GG L I W     +   + M G A   +EG +++  
Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289


>gi|296532249|ref|ZP_06894993.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957]
 gi|296267419|gb|EFH13300.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957]
          Length = 276

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 103/281 (36%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D R     ++   I ALS        DQ + +   + A  D F
Sbjct: 1   MIPFRKMHGLGNDFIVVDARPAPLPLSPTRIAALSDRHRGIGCDQFITLERPE-AGADVF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSE ++CGN  RCV   L +   R      T+RG L  +    G+I  DMG P
Sbjct: 60  MRIHNPDGSEAEACGNATRCVAWLLMAETGRDHVVVRTVRGDLPCERLAGGTIRADMGPP 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L W+ +PLA + D          P++   + +P   SMGNPHA FFVE  L   D  + 
Sbjct: 120 SLAWQEVPLAEAMDTT------HLPIDLGAVADPAACSMGNPHATFFVET-LEGLDWQAL 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L   HP+  +  N+  A V S E + L  WERG G T ACGS ACA++V +       
Sbjct: 173 GPLAEHHPLLPQRANIGFAEVVSPEHIRLAIWERGAGPTLACGSGACATLVNAHRRGLAG 232

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
           R   + + GG L +EW   +NHV M G     + G+ D  T
Sbjct: 233 RRARIDLPGGPLELEWRLSDNHVLMGGPVATAFLGQFDPDT 273


>gi|37678271|ref|NP_932880.1| diaminopimelate epimerase [Vibrio vulnificus YJ016]
 gi|161501834|ref|NP_760075.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6]
 gi|320154949|ref|YP_004187328.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O]
 gi|29839314|sp|Q8DD81|DAPF_VIBVU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56748740|sp|Q7MQC1|DAPF_VIBVY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|37197010|dbj|BAC92851.1| diaminopimelate epimerase [Vibrio vulnificus YJ016]
 gi|319930261|gb|ADV85125.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O]
 gi|319999166|gb|AAO09602.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6]
          Length = 276

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVYFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     D  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I  V    L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPF----RAKQKEKTYIMRVGEKTLFCG-AVSMGNPHV-VTVVDDVDSAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V+V + GG L I W      ++MTG A   ++G+L
Sbjct: 238 ENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274


>gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
 gi|166224252|sp|A4JIQ6|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
          Length = 289

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++++        D  
Sbjct: 3   LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F+T R    ++S   + ++G++      +G + VDMG
Sbjct: 63  YRIFNCDGGEVEHCGNGARCFVKFVTDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +P   S    + D +            R    VSMGNPHA+  V+ D   Y 
Sbjct: 123 APVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQVVD-DAEAYP 181

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A    
Sbjct: 182 VLAEGPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281
              +  V+V   GG L I W     +   + M G A   +EG++++
Sbjct: 242 GLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIEL 287


>gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
           29176]
 gi|197297320|gb|EDY31882.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
           29176]
          Length = 281

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 145/288 (50%), Gaps = 16/288 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M+  M  F KM+G+GN  + ++       + ++ A+           D ++LI+  + A 
Sbjct: 1   MEKKM-KFTKMQGLGNDYVYVNCFKEKIEDPSALAVRISDRHFGVGSDGLILINPSKVA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113
            D  + + N DGS  + CGNG+RCV +++       +++ + ET+ GI       +  + 
Sbjct: 59  -DCEMEMYNADGSRGEMCGNGIRCVGKYMYDYGLTDKEAISVETLAGIKYLQFFIENGKV 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + VDMG PIL    IP+    ++   +   +    +        +SMGNPHAI +V+ 
Sbjct: 118 AKVKVDMGSPILTPAEIPVVAEGERAVDEPIVVDGTEYRM----TCISMGNPHAIVYVD- 172

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+ +  +   G L  KH  F   VN    +V    ++++R WERG G T ACG+ ACA+ 
Sbjct: 173 DVKNLPIEKIGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGACATA 232

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           VA      T   V+VK+LGG L IEW  + N VFMTG AK  ++G  +
Sbjct: 233 VACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDGVWE 280


>gi|84514984|ref|ZP_01002347.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53]
 gi|84511143|gb|EAQ07597.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53]
          Length = 281

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 15/280 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
            + + F KM G+GN  +V+D RG    +T+  + A++       FDQ+ +I        D
Sbjct: 16  QTFLPFRKMHGLGNDFVVVDERGTTPRVTAALVQAIADRHRGVGFDQLAVI--SDTPDAD 73

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +   N DGS   +CGN  RC+ R +  +  +++ T  T RG L A +   G  SV+MG
Sbjct: 74  LHLTFWNSDGSTAATCGNATRCIARLVMDQTGQRNLTITTDRGTLQAVDTGGGLTSVNMG 133

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P LDW  IPLA   D +                +P    MGNPH  FFV+ D    DLA
Sbjct: 134 QPQLDWHEIPLAEQIDTLQL----------PIDGSPTATGMGNPHCTFFVD-DAEAVDLA 182

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+  HP+F +  N+  A +   + L +R WERGVG+T A GS++CA+ VA+     
Sbjct: 183 MRGALIEHHPLFPQRTNVQFASLIGPDHLRMRVWERGVGVTLASGSSSCATAVAAARRGL 242

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T R V++ + GG L I+W D+  ++MTG     ++G+  +
Sbjct: 243 TGRKVTITLDGGDLAIDWRDDG-IWMTGATAYVFDGQWRL 281


>gi|323500160|ref|ZP_08105105.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326]
 gi|323314789|gb|EGA67855.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326]
          Length = 276

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V     D  ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIPFKAK----QTEKTYILRADEKTLFCG-AVSMGNPHV-VTVVDDVNTTDVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVLSPKEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG A   ++G+L
Sbjct: 238 ENVVVHLPGGDLKIRWQGPGKPLFMTGPATHVFDGQL 274


>gi|323495293|ref|ZP_08100374.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546]
 gi|323310470|gb|EGA63653.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546]
          Length = 276

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 92/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V     D  ++V+MGEP
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGEP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPGKIPFKAK----QTEKTYILRADDKTLFCG-AVSMGNPHV-VTVVDDVTTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V   + ++LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVRRDEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      ++MTG A   ++G+L
Sbjct: 238 EKVKVNLPGGSLQISWQGPGKPLYMTGPATHVFDGQL 274


>gi|269964930|ref|ZP_06179100.1| diaminopimelate epimerase [Vibrio alginolyticus 40B]
 gi|269830406|gb|EEZ84630.1| diaminopimelate epimerase [Vibrio alginolyticus 40B]
          Length = 276

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP      + ++        N LF      VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPFKAK--QKEKTYIMRAGDNTLFCG---AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG     ++G+L
Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274


>gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14]
          Length = 276

 Score =  226 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 136/283 (48%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++      ++ ++ AI           D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFEEKVEDPSALAIQVSDRHFGIGSDGLILICPSEVA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSISV 118
            + N DGS  + CGNG+RCV +++       +   T ET+ GI       +  +   + V
Sbjct: 59  AMYNADGSRGEMCGNGVRCVGKYMYDYGLTDKTEITVETLAGIKTLQLFVENGKVAKVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL    IP+    DK   +   +    +        VSMGNPHA+ +V+ D+ + 
Sbjct: 119 DMGSPILTPAEIPVVAEGDKAVDEPILVDGKEYHM----TCVSMGNPHAVVYVD-DVNNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G     H  F   VN    +V    ++ +R WERG   T ACG+ ACA  V+   
Sbjct: 174 PIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACAVAVSCIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              T   V+VK+LGG L I+W  + N V+MTG A   ++G+L 
Sbjct: 234 NGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGELK 276


>gi|294142608|ref|YP_003558586.1| diaminopimelate epimerase [Shewanella violacea DSS12]
 gi|293329077|dbj|BAJ03808.1| diaminopimelate epimerase [Shewanella violacea DSS12]
          Length = 280

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 5/279 (1%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLANRHFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+ ++    ++     T  G L  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PIL+   IP      +           + +       VS+GNPH +  VE D+   D+ 
Sbjct: 121 IPILEPSKIPFNAKRAEKTYLLQTDTAESKMQTFLCGAVSLGNPHCVLDVE-DVQATDVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+ V      K
Sbjct: 180 GIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            +  V V + GG L I W      ++MTG A+  ++G++
Sbjct: 240 LDNRVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQI 278


>gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
 gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
          Length = 276

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM+G+GN  +V+D+     N+ ++ +  L+        DQ++++       VD  
Sbjct: 2   LLRFTKMQGLGNDFVVLDLVTQRFNLQAEHVRKLADRHFGIGCDQLLVVETPMQPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  +F+  +    +     ET  GI+      D  I V+MG
Sbjct: 62  YRIYNGDGNEVEQCGNGARCFAKFVRDKKLTGKNKIRVETNSGIIELSVMEDRQIRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P+L+   IP   S                    +   VS+GNPHAI  VE D+    ++
Sbjct: 122 KPLLEPADIPFTASKRANTYTLLVDD-----EEVSISAVSVGNPHAIITVE-DIDTAPVS 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F + VN+   +V S + ++LR +ERG G T ACGS ACA++V+      
Sbjct: 176 ILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAAMVSGQLQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ++ ++  + GG L +EWH   H V MTG A   +EG++ +
Sbjct: 236 LDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276


>gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
 gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
          Length = 278

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K  G+GN  ++ID R   + I +                D ++     Q+   D  
Sbjct: 3   IEFTKYHGLGNDFILIDNRHQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQN-GTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISVDM 120
           +RI N DGSE + CGNG+RC+ +F+       + T    +T+ G++  +   DG + VDM
Sbjct: 62  MRIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP     +  DR    +             VSMGNPH I FVE D+    L
Sbjct: 122 GIPRLLAAEIPTT--LESPDRKVVELPLEVAGQSWLVTCVSMGNPHCITFVE-DVSAIAL 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G L   H +F +  N    ++   + + +R WERG G+T ACG+ ACASVVA     
Sbjct: 179 ETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAGVLAG 238

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           K +R  +V++ GG L IEW   +  ++MTG A + + GK+
Sbjct: 239 KCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278


>gi|294788152|ref|ZP_06753395.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453]
 gi|294483583|gb|EFG31267.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453]
          Length = 282

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 138/279 (49%), Gaps = 7/279 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID      +  +  I           FDQ++++   Q   VD   
Sbjct: 4   LKFSKMHGLGNDFMVIDATRQTFDTANAPIREWADRHTGVGFDQLLIVESSQTEGVDFGY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC V+F+T +    ++    +T +GI+  + N DG ++V+MG+
Sbjct: 64  RIFNADGSEVEQCGNGARCFVKFVTEQGLTDKQEIVVQTAKGIIKPRLNDDGLVTVNMGQ 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + +P                 V  L      +V+MGNPHA+ +V  ++    + S
Sbjct: 124 PRFAPEDVPFVL-RSGEQVGAVSYIVVKDLDSAEMSLVNMGNPHAVMWVG-NVDDAPVES 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G  L  H  F + VN+   +V     + LR +ERG G T ACG+ ACA+VVA   L   
Sbjct: 182 WGAALQNHQRFPQKVNVGFMQVVDKNHIKLRVYERGAGETQACGTGACAAVVAGVRLGAV 241

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                V V + GG L I W + + V M G A   + G+L
Sbjct: 242 ASGEWVRVVLPGGELQISWEEGSDVMMMGPAVTVFSGEL 280


>gi|114766737|ref|ZP_01445675.1| diaminopimelate epimerase [Pelagibaca bermudensis HTCC2601]
 gi|114541056|gb|EAU44112.1| diaminopimelate epimerase [Roseovarius sp. HTCC2601]
          Length = 279

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 143/286 (50%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T     A++       FDQ+ LI        DA +
Sbjct: 11  LSFMKMHGLGNDFVVLDGRARRITVTPGLARAIADRHRGVGFDQLALIE---TGEGDARL 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +   T  T RG L A++  DG  SV+MG P 
Sbjct: 68  TFYNADGSTAGACGNATRCIARFLMDESGKDRLTLVTERGKLFAQDAGDGLTSVNMGHPQ 127

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   D +                 P    MGNPH  FFVE +    DL +FG
Sbjct: 128 LDWQDIPLASEMDTLAL----------PIEGTPVATGMGNPHCTFFVE-NAEAIDLEAFG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ +A +   + L +R WERGVG+T + GS++CA+ VA+     T R
Sbjct: 177 PRFEHHPLYPQRTNVQVASLIGPDHLRMRVWERGVGVTLSSGSSSCATAVAAARRGLTGR 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            V++++ GG L I+W D+  V+MTG     ++G        W++  
Sbjct: 237 KVTLELDGGTLQIDWRDDG-VWMTGATAHVFDGSFGP---AWLEAA 278


>gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4]
          Length = 277

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 133/284 (46%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++        ++ +I           D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKVENPAEVSIKVSDRHFGIGSDGLITIGPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE------NRDGSISV 118
            I N DGSE + CGNG+RCV +++       +       G  V          +   + V
Sbjct: 59  HIYNADGSEAEMCGNGIRCVAKYVYDHHLTDNTEITVETGAGVLTLILFPENGKVQQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPI     IP+    DK+  +   +G        N   VSMGNPHA+ FV+ D   +
Sbjct: 119 DMGEPIHTPAEIPVVADGDKVIDEPIEVGGK----TWNMTCVSMGNPHAVVFVD-DTASF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L ++G L   H  F +  N    ++ S    ++R WERG   T ACG+  CA V+A   
Sbjct: 174 PLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCACVMACIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             KT   V V + GG L IE+  ++NHVFMTG A + + G++++
Sbjct: 234 NGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEIEV 277


>gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
 gi|123056925|sp|Q116P1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
          Length = 278

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 96/277 (34%), Positives = 133/277 (48%), Gaps = 9/277 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K  G+GN  ++ID R     I     AI     +     D ++          D  +R
Sbjct: 5   FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPG-VKQTDYTMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSE + CGNG+RC+ +F+       +  +   T  GI+V +   DG ++VDMG+P
Sbjct: 64  IFNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L    IP   +    D                   VSMGNPH I FVE D+   DLA  
Sbjct: 124 RLLASEIPTTLA--NADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVE-DVTAIDLAKI 180

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G     +P+F E  N    +V S + + +R WERG G T ACG+ ACASVVA        
Sbjct: 181 GPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNE 240

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           R V+V++ GG L IEW   +  ++MTG A+K + G +
Sbjct: 241 RLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277


>gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299]
 gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299]
          Length = 331

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 16/290 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTD-DNTHFDQIMLIHDFQ--DASVDA 62
            F K +G+GN  +++D R      ++S+    L         D ++            D 
Sbjct: 43  KFYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDY 102

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            +R+ N DG+E + CGNG+RC+  F         K++   T+ G++  +   DG +SVDM
Sbjct: 103 SMRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPKAYKVGTLAGLIQPEVRADGQVSVDM 162

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------- 173
           GEP LD   +P        D                   VSMGNPH + F ++       
Sbjct: 163 GEPTLDPPKVPCTFEA-TQDGAAVRAKMEVDGETWLVTAVSMGNPHCVTFGKEGECDEEG 221

Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +  + L+ +G +  KHP F    N     V +   + +  WERG G T ACG+ ACA+
Sbjct: 222 IKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTGACAT 281

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           VVA+    +T R  +V++ GG L IEW + +N V MTG A+  ++G + +
Sbjct: 282 VVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331


>gi|103488207|ref|YP_617768.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256]
 gi|123252939|sp|Q1GPI7|DAPF_SPHAL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|98978284|gb|ABF54435.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256]
          Length = 268

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 99/275 (36%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +VID R     +T    +A++        DQ++L+     A  D  +R
Sbjct: 4   RFTKMHGLGNDFVVIDARVAPVEMTPARAHAIADRRHGIGCDQLILLEPSTSA--DVKMR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG EV++CGN  RCV          K    ET+ G+L      DG   V +GEP+ 
Sbjct: 62  IFNADGGEVEACGNATRCVATL-----IGKPAVIETLAGMLRVTP-ADGGAEVTLGEPVF 115

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPLA   D  D       PV    L +   V++GNPH +FFV  +     L   G 
Sbjct: 116 DWDHIPLAMPMDTRD------MPVAWDELEHGAAVNVGNPHIVFFV-PEADAVALDQLGP 168

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E VN+++A +     L LR WERGVGLT ACG+ ACA+ VA+         
Sbjct: 169 RIETDPLFPERVNVNVASLDGENQLQLRVWERGVGLTQACGTGACATAVAAIRAGLVRSP 228

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           V+V + GG L+I W     + M+G A + ++G+ D
Sbjct: 229 VTVALPGGDLVIRWAPGEPIVMSGAATRVFDGETD 263


>gi|148244654|ref|YP_001219348.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225761|sp|A5CWN5|DAPF_VESOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146326481|dbj|BAF61624.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA]
          Length = 271

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D         +  I  L+       FDQ++++       VD  
Sbjct: 2   LINFTKMHGLGNDFMVVDNLAGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
             I N +GSEV+ CGNG RC  RF+  +        T +T   I+    N D ++ VDMG
Sbjct: 62  YVIYNSNGSEVEQCGNGARCFARFVNYKNLTHSNPITVKTRSNIISLHLNDDNTVCVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IPL                   +   +   +S+GNPH +  V+ D+   D+ 
Sbjct: 122 KPSFNPADIPLLVP---------QQSEYYQIEGFDLGAISIGNPHCVMLVK-DVNTIDVN 171

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +    + +  +     N+   ++ +   ++LR +ERG   T ACGS ACA+V        
Sbjct: 172 TIALKIQQSELLPNQANIGFMQILNTHEINLRVYERGSEETLACGSGACAAVAYGVEQGL 231

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             + V V + GG  LIE+    H+F++G A+  +EG+++I
Sbjct: 232 LKKNVVVHLSGGDALIEYTQGGHIFLSGPAQFVFEGQVEI 271


>gi|91227529|ref|ZP_01261866.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01]
 gi|91188553|gb|EAS74845.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01]
          Length = 276

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP      + ++        N LF      VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPFKAK--QKEKTYIMRAGDNTLFCG---AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVMSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG     ++G+L
Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274


>gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
 gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
          Length = 277

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 100/284 (35%), Positives = 153/284 (53%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + +D       N +  +            D ++LI     A  D  +
Sbjct: 1   MKFTKMQGLGNDYIYVDCTKNIIDNPSVVSKKVSDRHFGIGSDGLVLIMKSDIA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSISV 118
           R+ N DGSE + CGN +RCV +++       +K+ T ET+ GI V     ++N+   + V
Sbjct: 59  RMFNSDGSESEMCGNAIRCVGKYVFDNGLTDKKNLTIETLAGIKVLDLKIEDNKVVQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL+ K IP+    D+   +   +   N+        VSMGNPHAI +V+ D   +
Sbjct: 119 DMGEPILESKQIPVDSEKDRFISESVEVDGYNYK----VTAVSMGNPHAITYVD-DTASF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  H +F + +N     V    +L +R WERG G T ACG+ A A +VAS  
Sbjct: 174 PLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASAVLVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              + RA ++K+LGG L+IEW + +NHV+MTG A+K +EG+++I
Sbjct: 234 NGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEIEI 277


>gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
 gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
          Length = 278

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN   V+D          + I  L        FDQ++++       +D  
Sbjct: 2   LLKFSKMHGLGNDFAVVDAVSRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N +GSEV+ CGNG RC  +F+  +    +     ET +G +      DG ++VDMG
Sbjct: 62  YRIYNSNGSEVEHCGNGARCFAKFVIEKDLTNKSVINVETKQGQIQLHVQDDGEVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +P   +  + D    ++     + L     VS+GNPHA+  V+  L    ++
Sbjct: 122 APSFAPADLPFDATEKQDDLYTLNLEGYGSVEL---TPVSVGNPHAVIRVDR-LTDEIVS 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G L+  H  F   VN+    V S + ++LR +ER VG T ACG+  CA++VA      
Sbjct: 178 TVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCAAIVAGIRQGW 237

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            N  V+  +LGG L IEW      + MTG A K +EG++ +
Sbjct: 238 LNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQIYL 278


>gi|293602485|ref|ZP_06684931.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553]
 gi|292819247|gb|EFF78282.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553]
          Length = 297

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 90/290 (31%), Positives = 134/290 (46%), Gaps = 12/290 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D       +T +   AL         DQI+++     A  D   R
Sbjct: 4   NFTKMHGAGNDFVVLDGVRQTIEMTPERARALGDRHFGIGADQILVVERPTVADADFRYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     +   GILV  E  D  ++VDMG  
Sbjct: 64  IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAQIATGILVLDEGDDEQVTVDMGST 123

Query: 124 ILDWKLIPLA-------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
             + + +P         R  +    +     P           V++ NPHA+  V+ ++ 
Sbjct: 124 RFEPEALPFDTAGLASMREGEDTLWELDLDAPDGVPAKVWLSAVAISNPHAVQVVD-NVD 182

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F+  VN    +V    ++ LR +ERG G T ACG+ ACA+V A 
Sbjct: 183 TAPVAVQGPLIETHPRFARRVNAGFLQVMDRHNVRLRVFERGAGETLACGTGACAAVAAG 242

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
                    V V+  GG L + W+ +  + MTG A+  + G++DI    +
Sbjct: 243 IRRGLLESPVRVQTRGGVLTVAWNGDQ-LRMTGPAESVFTGQVDIDKLVF 291


>gi|304392645|ref|ZP_07374585.1| diaminopimelate epimerase [Ahrensia sp. R2A130]
 gi|303295275|gb|EFL89635.1| diaminopimelate epimerase [Ahrensia sp. R2A130]
          Length = 288

 Score =  225 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 135/284 (47%), Positives = 170/284 (59%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V F+KM GIGN+I+V D+RG  D +T +A  AL  D +T FDQ+M IHD  D + DA IR
Sbjct: 5   VSFSKMNGIGNRIVVADLRGRADVVTEEAARALGHDPDTGFDQLMAIHDAGDENRDATIR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS   +CGNG RCVV +L  R     F F      L AK   DG ISV+MG P  
Sbjct: 65  IYNTDGSRAGACGNGTRCVVDWLHQRGGGNDFRFAVDGQPLSAKRLEDGRISVNMGVPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPL+  F         +GP+    L  P V ++GNPH +FF E+D   Y L  FG 
Sbjct: 125 DWTQIPLSEEFADTSGIELEVGPLGAPLLHTPAVANIGNPHCVFFAENDPDTYALDKFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  H +F +  N+SIA+VTS  ++ LRTWERG GLT ACGSAACA+VV +     T R 
Sbjct: 185 MLEHHMLFPDRANISIAQVTSPTTMKLRTWERGAGLTLACGSAACAAVVCAVRRELTERH 244

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           V+V + GG L IEW D+N + MTG A  E++G  D  TG W + 
Sbjct: 245 VTVSLPGGDLDIEWRDDNFIIMTGTATHEFDGTFDPATGGWERA 288


>gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
          Length = 282

 Score =  225 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 97/287 (33%), Positives = 151/287 (52%), Gaps = 17/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  +VI+        ++ +  AI           D ++++   +D  +D 
Sbjct: 1   MRFTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDRHFGIGGDGLVIVG--KDRELDV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR------GILVAKENRDGSI 116
           F+RI N DGSE + CGN +RCV +F+  R    +               ++ K      +
Sbjct: 59  FMRIFNPDGSEPEMCGNAIRCVSKFVWERGLVSTTRISVNTLAGPRYPEVILKNGEVEKV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEPIL+  LIP+  S  K+  +                 VSMGNPH + FV+ +  
Sbjct: 119 RVDMGEPILERSLIPMLGSPGKVVGEELDTTAGRFRI----TAVSMGNPHCVVFVD-EFS 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              ++ +G +L  HP+F    N+  A++    ++ +R WERG G T ACG+ ACA++VAS
Sbjct: 174 SVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGACATLVAS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
                T R  +V++ GG L+IEW  DNNHV+MTGEAK+ + G++D++
Sbjct: 234 YLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDLR 280


>gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
 gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
          Length = 368

 Score =  225 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINA-LSTDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R            +D +            D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQ-G 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RF       +  +S+  ET  G ++ +  +DG 
Sbjct: 60  QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  + +P   S D+    R  +         +   V MGNPH +  V+ DL
Sbjct: 120 IRVDMGAPFLKPEAVPTLLSPDENGLPRGEVTR--EGLTLSLAAVGMGNPHVVVPVD-DL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 + G  L   P+F    N+   +V S + L++R WERG G T ACG+ ACA++VA
Sbjct: 177 ETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           +  L  ++   +V + GG L I W      VFMTG A   ++G ++  
Sbjct: 237 AFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDGVMNPD 284


>gi|284006598|emb|CBA71859.1| diaminopimelate epimerase [Arsenophonus nasoniae]
          Length = 269

 Score =  225 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 125/273 (45%), Gaps = 10/273 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I           FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVYFSPELICRLSDRHRGIGFDQLLVVEAPYDPDLDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF+  +    ++     T  G L      +  + V+MG P  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKKLTNKRDIKVSTQSGRLTLSVAENEDVCVNMGVPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P         +                 VVS+GNPH +  VE D+   ++A  G +L
Sbjct: 121 NKVPFKA-----QKSEKTYIIRTQQQTILCGVVSIGNPHCVLQVE-DIDTAEVALLGPML 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            KH  F E  N+   +V   E + LR  ERGVG T ACGS ACA+V          ++V 
Sbjct: 175 EKHERFPERANIGFMQVIDHEHIRLRVHERGVGETQACGSGACAAVAIGIQQGLLRKSVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           V + GG L I W+   H +FMTG A   ++G +
Sbjct: 235 VDLPGGMLKIRWNGLGHPLFMTGPATHVYDGVI 267


>gi|93005051|ref|YP_579488.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5]
 gi|122416051|sp|Q1QE99|DAPF_PSYCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|92392729|gb|ABE74004.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5]
          Length = 295

 Score =  225 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 141/280 (50%), Gaps = 8/280 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +VID+     ++T D +  L        FDQ++++       VD  
Sbjct: 2   LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG+EV+ CGNG RC  RF+ +R    ++    ET  GI+    +R G + VDMG
Sbjct: 62  YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDRYGWVEVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   IP         ++ +H+           +V +MGNPHA+  V+ D+   D+ 
Sbjct: 122 KPKFEPSEIPFTPRAITKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKVD-DVLDADVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F E VN+   ++ +   + LR +ERGVG T ACG+ ACA+V        
Sbjct: 179 TLGKAIESHPAFPERVNVGFMQIMNQRHIRLRVFERGVGETQACGTGACAAVAIGIREGW 238

Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +    V  ++ GG ++I+W     V MTG     +EG  
Sbjct: 239 LDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVF 278


>gi|148978772|ref|ZP_01815152.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3]
 gi|145962193|gb|EDK27477.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3]
          Length = 276

 Score =  225 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V K   +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEENDLITVNMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPSKIPFKAKQP----EKTYILRTDAHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V          
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V++ GG L I W      ++MTG A   ++G+L
Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLYMTGPATHVFDGQL 274


>gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
 gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
          Length = 278

 Score =  225 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 97/276 (35%), Positives = 137/276 (49%), Gaps = 8/276 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     ++     A+        +DQ + I   ++    A++
Sbjct: 4   LAFTKMHGLGNDFVVVDGRVHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGT-AYM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DG+E Q+CGNG RCV   L     +     ETI G L+  +  DG ++VDMG   
Sbjct: 63  AIHNPDGTEAQACGNGTRCVAAVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDMGPAN 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   D        +             V+MGNPHA+FFV  D    DL++ G
Sbjct: 123 LDWRAIPLASDTD-----TLSVTVPEAGTFGPATAVNMGNPHAVFFV-PDAEAVDLSTVG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +    +F E  N+    V + + L +R WER  G+T ACGS ACA++VA+     T R
Sbjct: 177 PRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAAVRRGLTER 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +V + GG L I W  + HV MTG     + G LD
Sbjct: 237 RATVVLDGGPLEIFWRSDGHVEMTGPVATSFAGTLD 272


>gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5]
 gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5]
          Length = 282

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 15/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++       N +  A+           D ++LI+  + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVNGFTERIENPSEVAVKVSDRHFGIGSDGLILINPSKVA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
            + N DGS  + CGNGMRCV    +      +     ET+ GI   + + +      + V
Sbjct: 59  EMYNADGSRGEMCGNGMRCVGKYVYDYGLTDKTEIAVETLGGIKYLELSVENGKVVQVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L   LIP+    + +  +   +    +        VSMGNPH + +++ D+ H 
Sbjct: 119 DMGKPELKSALIPIVSDEEMVINEPIIVDGKEYKMTG----VSMGNPHTVVYMD-DIEHL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G     H  F + +N   A V   +++ +R WERG G T ACG+ ACA  V+S  
Sbjct: 174 DIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACAVAVSSIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285
              T   V+V++LGG LLI+W  + + V+MTG A+  ++G+ +  + +
Sbjct: 234 NGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGEWNQSSKE 281


>gi|84393559|ref|ZP_00992313.1| diaminopimelate epimerase [Vibrio splendidus 12B01]
 gi|84375838|gb|EAP92731.1| diaminopimelate epimerase [Vibrio splendidus 12B01]
          Length = 276

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V K   +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDQITVNMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V          
Sbjct: 178 GPLLESHERFPERVNAGFMQVINREEVRLRVYERGAGETQACGSGACGAVAVGINQGLLA 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V++ GG L I W      +FMTG A   ++G+L
Sbjct: 238 ENVKVRLPGGDLQISWQGPGKPLFMTGPATHVFDGQL 274


>gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110]
 gi|259595065|sp|C5CND4|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110]
          Length = 294

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 137/292 (46%), Gaps = 14/292 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA---SVD 61
           + F KM+G GN  +V+D       +T+     L+        DQI+ +          VD
Sbjct: 3   IRFTKMQGAGNDFVVLDETRGTLGLTAAQYRFLADRHFGVGADQILTVRPPSKGAAEGVD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
               I N DG EV+ CGNG RC +RF        + +   ET+ GI+  +   DG ++VD
Sbjct: 63  FQYVIHNADGGEVEQCGNGARCFMRFVREHHLTDKDTVRVETLAGIIEPRMGADGRVTVD 122

Query: 120 MGEPILDWKLIPLA------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           MG PI +   +P        +           +G      + +  V+SMGNPHA+  V+ 
Sbjct: 123 MGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQVVD- 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           ++    +A  G L+  HP F++ VN    +V     + LR +ERG G T ACG+ ACA+V
Sbjct: 182 NVDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAV 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284
           VA   L    R V V+  GG L I W    H V MTG A   +EG +++   
Sbjct: 242 VAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDIEVPEL 293


>gi|254230110|ref|ZP_04923506.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|262392885|ref|YP_003284739.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|151937355|gb|EDN56217.1| diaminopimelate epimerase [Vibrio sp. Ex25]
 gi|262336479|gb|ACY50274.1| diaminopimelate epimerase [Vibrio sp. Ex25]
          Length = 276

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGEKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS ACA+V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FMTG     ++G+L
Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274


>gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
 gi|166225730|sp|A2SKV9|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
          Length = 296

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 13/291 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       ++      L+        DQ++++    +  +D   
Sbjct: 3   LRFTKMQGAGNDFVVLDATREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDFTY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI+N DGSEV+ CGNG RC VR++      K+ +    T  G++  +   DG ++VDMG 
Sbjct: 63  RIVNADGSEVEQCGNGARCFVRYVREAGLTKKSAIRVRTAGGVIEPRWLVDGRVTVDMGA 122

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDD----LY 176
           P+ +   +P  A      + + F + P++         VVSMGNPHA+  V       + 
Sbjct: 123 PVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSGGVD 182

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+ +H  F + VN    +V S   + LR +ERG G T ACG+ ACA+VVA 
Sbjct: 183 EAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAAVVAG 242

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKT 283
             L        V V   GG L IEW    +  V+MTG A+  + G++D+  
Sbjct: 243 IRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDLPE 293


>gi|29655253|ref|NP_820945.1| diaminopimelate epimerase [Coxiella burnetii RSA 493]
 gi|154706485|ref|YP_001425375.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111]
 gi|161830776|ref|YP_001596002.1| diaminopimelate epimerase [Coxiella burnetii RSA 331]
 gi|164685819|ref|ZP_01945724.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177']
 gi|212213429|ref|YP_002304365.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212]
 gi|212219479|ref|YP_002306266.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154]
 gi|81628361|sp|Q83AD4|DAPF_COXBU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082831|sp|A9KGY8|DAPF_COXBN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082832|sp|A9N9J6|DAPF_COXBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807497|sp|B6J395|DAPF_COXB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807498|sp|B6J630|DAPF_COXB1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29542525|gb|AAO91459.1| diaminopimelate epimerase [Coxiella burnetii RSA 493]
 gi|154355771|gb|ABS77233.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111]
 gi|161762643|gb|ABX78285.1| diaminopimelate epimerase [Coxiella burnetii RSA 331]
 gi|164601335|gb|EAX33603.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177']
 gi|212011839|gb|ACJ19220.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212]
 gi|212013741|gb|ACJ21121.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154]
          Length = 276

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V+F KM+G GN  +VID       +T+  I  ++       FDQ+++I   ++ SVD   
Sbjct: 3   VNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHF 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC+ RF+ +     R+     T+  +L  K   DG +SV MG 
Sbjct: 63  RIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTLNEVLELKIQPDGKVSVKMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   IP   S        F+   V++  ++   VV++GNPHAI  VE  +   ++  
Sbjct: 123 PRFEPTEIPFIAS----GVANFYDIAVDNQIVKLG-VVNIGNPHAIIPVER-INAEEVGK 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L+ H  F EG N+   +V   +++ LR +ERG G T ACGS ACA+V         
Sbjct: 177 LGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACAAVAVGRRCGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
              V V   GG L I+W      V MTG A   + G+ 
Sbjct: 237 QERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGEW 274


>gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 334

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 139/296 (46%), Gaps = 15/296 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQD- 57
           +++  V F+K  G+GN  ++ID R   +  +T +    L         D ++        
Sbjct: 39  LEARKVPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIGGDGVIFALQPPSE 98

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAK 109
               A  D  +RI N DGSE + CGNG+RC+ +FL    + KS    +   T+ G +V  
Sbjct: 99  SGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGAYQIHTLAGRIVPV 158

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            N DG+I+VDMGEP L+   +P     +             +        V MGNPHAIF
Sbjct: 159 MNEDGTITVDMGEPFLEAAKVPTTLEANAEHDSVVEQTLEANGKTWKCTAVGMGNPHAIF 218

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV D     D    G  L  H  F    N+   +V   + L ++ WERG G T ACG+ A
Sbjct: 219 FVNDLEKDIDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLIMKVWERGAGPTLACGTGA 278

Query: 230 CASVVASGCLHKT---NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA  VA+    K    ++ V V + GG L IEW + +N ++MTG A   + G+  +
Sbjct: 279 CALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYMTGPATFAFAGETKV 334


>gi|28899757|ref|NP_799362.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838744|ref|ZP_01991411.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810]
 gi|260365175|ref|ZP_05777740.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030]
 gi|260878125|ref|ZP_05890480.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034]
 gi|260895818|ref|ZP_05904314.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466]
 gi|260900849|ref|ZP_05909244.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037]
 gi|31340032|sp|Q87KJ4|DAPF_VIBPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28808009|dbj|BAC61246.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747830|gb|EDM58714.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810]
 gi|308087181|gb|EFO36876.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466]
 gi|308092770|gb|EFO42465.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034]
 gi|308110598|gb|EFO48138.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037]
 gi|308111034|gb|EFO48574.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030]
          Length = 276

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V S + + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            +V V + GG L I W      +FMTG A   ++G+L
Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274


>gi|328472416|gb|EGF43282.1| diaminopimelate epimerase [Vibrio parahaemolyticus 10329]
          Length = 276

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/277 (33%), Positives = 135/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G ++     DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + + + LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            +V V + GG L I W      +FMTG A   ++G+L
Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274


>gi|241767262|ref|ZP_04765000.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN]
 gi|241362069|gb|EER58195.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN]
          Length = 292

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +T      L+        DQI+ +       +D   
Sbjct: 3   IRFTKMQGAGNDFVVLDETQGRLGLTPAHYRFLADRHFGVGADQILTVRPSPAEGIDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC  R++  +      T   +T+ G++  +   DG ++VDMG 
Sbjct: 63  VIHNADGGEVEQCGNGARCFARYVRDKGLTTKDTIRVQTLAGVIAPQLTPDGRVTVDMGR 122

Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           P  D   +P   +           +    +            VVSMGNPHA+  V+ D+ 
Sbjct: 123 PEFDAARVPFDAAGLAPVAQGLGQKWPLALAGSAQDAPVMVAVVSMGNPHAVQLVQ-DVD 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F   VN    ++     + LR +ERG G T ACG+ ACA+V A 
Sbjct: 182 TAPVAQTGPLIESHPRFPRRVNAGYLQIVDRGHVRLRVFERGAGETLACGTGACAAVAAG 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282
             L   +  V V+  GG L I W   + + VFMTG A   ++G++++ 
Sbjct: 242 IRLGLLDARVDVQTRGGLLTIAWSGQEADSVFMTGPATLVFDGQIELP 289


>gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331]
          Length = 280

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/280 (35%), Positives = 134/280 (47%), Gaps = 9/280 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID    H + T      L         DQ++++   Q   VD   RI N 
Sbjct: 1   MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG EV+ CGNG R  V+F+T +    +++   ET+ GI+  K   DG I+V MG P+L  
Sbjct: 61  DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVLAP 120

Query: 128 KLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             +P          M  D      V    +    VVSMGNPHA+  VE D     + + G
Sbjct: 121 AAVPFDASNLDSRAMGEDTLWPLDVQGKQVW-ISVVSMGNPHAVQVVE-DSEAAPVLAEG 178

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F   VN    ++    S+ LR +ERG G T ACG+ ACA+VVA       + 
Sbjct: 179 PLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRRGLLDS 238

Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
            V+V+  GG L I W      V MTG A   +EG+++I  
Sbjct: 239 PVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEIAA 278


>gi|163745242|ref|ZP_02152602.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45]
 gi|161382060|gb|EDQ06469.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45]
          Length = 277

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 99/285 (34%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R    N++     A+        FDQ+ +I      + DA +
Sbjct: 9   LPFMKMHGLGNDFVVLDARAEAINVSPAMAQAIGHRQFGVGFDQLAVI---TQGAGDAQL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     R S    T RG L AK+  +G  SV+MG P 
Sbjct: 66  TFYNSDGSLSAACGNATRCIARFLMDETGRDSLHLTTARGDLAAKDAGNGLTSVNMGHPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  +PLAR  D +                +P    MGNPH  FFV+ D+   DL+  G
Sbjct: 126 LKWDEVPLAREMDTLHL----------PIEGDPVAAGMGNPHCTFFVK-DVEAVDLSDIG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                 P+F E  N+ +A++     + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 PRAEHDPLFPERTNVQVAQIVGPNHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           AV + + GG L I+W D+  V+MTG     + G     T  +++ 
Sbjct: 235 AVRIDLDGGTLHIDWRDDG-VWMTGPTMHVFSGTF---TADFLES 275


>gi|121606324|ref|YP_983653.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2]
 gi|120595293|gb|ABM38732.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2]
          Length = 295

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/293 (30%), Positives = 135/293 (46%), Gaps = 12/293 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M    + F KM+G GN  +++D       ++      L+        DQI+ +       
Sbjct: 1   MPFMRIRFTKMQGAGNDFVMLDETRGPLGLSPAHYRFLADRHFGVGADQILTVRPSPGEG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
           +D    I N DG EV+ CGNG RC VRF+  +    + +   +T+ GI+      DG ++
Sbjct: 61  IDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTTKDAVKVKTLGGIIEPCMQPDGRVT 120

Query: 118 VDMGEPILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           V+MG P+ + + IP   +           +    +            VVSMGNPHA+  V
Sbjct: 121 VNMGAPVFELERIPFNPAGLTPQTAGSWQKWPLALDGHAQAAPVFVAVVSMGNPHAVQLV 180

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + D+    +   G L+  HP F   VN    +V S   + LR +ERG G T ACG+ ACA
Sbjct: 181 D-DVDTAPVLEAGPLIEHHPSFPRRVNAGFMQVVSRSQIRLRVYERGAGETLACGTGACA 239

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282
           +VVA   L   +  V V   GG L IEW    +  V MTG A   +E ++++ 
Sbjct: 240 AVVAGIRLGLLDSRVDVLTRGGQLTIEWAGTLDAPVMMTGPATTVFESEIEVP 292


>gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
 gi|254767111|sp|A4FXV0|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
          Length = 277

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + +D         ++    +S        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGN +RCV +F+  +      T   ET+ GI V +   +      + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTISIETLAGIKVLEMTVENGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL  + IP+      +  +             N   VSMGNPHAI ++E ++  +
Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKDY----CYNFTCVSMGNPHAITYIE-NVEEF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H  F +  N+    +    ++ +R WERG G T ACG+ ACA + AS  
Sbjct: 174 PLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                R  +VK+LGG L+IEW++ +NH++MTG A   +EG++DI
Sbjct: 234 KGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEIDI 277


>gi|262278117|ref|ZP_06055902.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258468|gb|EEY77201.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202]
          Length = 281

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTSKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVAEQPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V     + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDENHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|119776381|ref|YP_929121.1| diaminopimelate epimerase [Shewanella amazonensis SB2B]
 gi|166225753|sp|A1SAP5|DAPF_SHEAM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119768881|gb|ABM01452.1| diaminopimelate epimerase [Shewanella amazonensis SB2B]
          Length = 275

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG ++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            PILD   IP         +        +         VSMGNPH +  V+ D+    +A
Sbjct: 121 VPILDPAQIPFKAK-----KFEKTYLLQSAQQTFLCGAVSMGNPHVVLEVD-DITQAPVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L +H  F +GVN+   +V + + + LR +ERG   T ACGS ACA+ V      K
Sbjct: 175 DVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               V V + GG L I W      ++MTG A++ ++G++ +
Sbjct: 235 LGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275


>gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
 gi|254767101|sp|B8FSD4|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
          Length = 283

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/284 (35%), Positives = 142/284 (50%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++  KM G+GN  + ID             +    L         D ++++     A  D
Sbjct: 1   MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115
           A +RI+N DGSE + CGNG+RC  R++  +    +     ET+ GIL  + +  G     
Sbjct: 59  ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLAGILTLQLSITGDQVTG 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL  + +P+    D +   R  +      F      VSMGNPH + FVE D 
Sbjct: 119 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEF----TAVSMGNPHCVLFVE-DY 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D    G  + KHP+F    N+    V S   L ++ WERG G T ACG+ ACASVVA
Sbjct: 174 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    +T R V+V + GG LLIEW ++N V+MTG A   ++G L
Sbjct: 234 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 277


>gi|259417389|ref|ZP_05741308.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B]
 gi|259346295|gb|EEW58109.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B]
          Length = 275

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/277 (36%), Positives = 139/277 (50%), Gaps = 14/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDA 62
           M+ F KM G+GN  +VID R     IT      ++       FDQ+ +I   ++ AS DA
Sbjct: 1   MLTFMKMHGLGNDFVVIDARTQDIQITPAMAKGIAHRQLGMGFDQLAVIFAAKEGASADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L  +  + +    T RG L AK+  +G  SV+MG 
Sbjct: 61  HLVFYNADGSTSAACGNATRCIARYLMDQSGKDALNLTTDRGELAAKDAGNGLTSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPL+   D ++                P    MGNPH  FFVE D     L  
Sbjct: 121 PQLLWDEIPLSEEMDTLEL----------PIEGAPTATGMGNPHCTFFVE-DAELIPLEE 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ IA V   + L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVMGPDHLRMRVWERGVGVTLASGSSSCATAVAAARKGLT 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R V + + GG L I+W ++  V+MTG      +G  
Sbjct: 230 GRNVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGSF 265


>gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51]
 gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 287

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/284 (35%), Positives = 142/284 (50%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++  KM G+GN  + ID             +    L         D ++++     A  D
Sbjct: 5   MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115
           A +RI+N DGSE + CGNG+RC  R++  +    +     ET+ GIL  + +  G     
Sbjct: 63  ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSKNPLQVETLAGILTLQLSITGDQVTG 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMGEPIL  + +P+    D +   R  +      F      VSMGNPH + FVE D 
Sbjct: 123 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEF----TAVSMGNPHCVLFVE-DY 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D    G  + KHP+F    N+    V S   L ++ WERG G T ACG+ ACASVVA
Sbjct: 178 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    +T R V+V + GG LLIEW ++N V+MTG A   ++G L
Sbjct: 238 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 281


>gi|163803626|ref|ZP_02197491.1| diaminopimelate epimerase [Vibrio sp. AND4]
 gi|159172574|gb|EDP57434.1| diaminopimelate epimerase [Vibrio sp. AND4]
          Length = 276

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 130/277 (46%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLANRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +      DG ++V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKITLAIEDDGEVAVNMGVP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP         +++ +I       L     VSMGNPH    V DD+   ++ + 
Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRTGEKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E  N    ++    ++ LR +ERG G T ACGS AC +V         +
Sbjct: 178 GPLLESHERFPERANAGFMQIVDRNNIRLRVYERGTGETQACGSGACGAVAVGIMQGLLD 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V + GG L I W      +FM G A   ++G+L
Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMAGPATHVFDGQL 274


>gi|212276289|ref|NP_001130140.1| hypothetical protein LOC100191234 [Zea mays]
 gi|194688384|gb|ACF78276.1| unknown [Zea mays]
 gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays]
 gi|219888355|gb|ACL54552.1| unknown [Zea mays]
          Length = 352

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 132/289 (45%), Gaps = 13/289 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A      +     D ++ +    +  
Sbjct: 64  SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-D 122

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +     SFT  T  G ++ +   DG +
Sbjct: 123 ADYTMRIFNSDGSEPEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQV 182

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    IP        ++              +   VSMGNPH + F  ++  
Sbjct: 183 KVDMGEPILSGADIPTKL-VATKNKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 241

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 242 TLQIDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACA 301

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            VVA+    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 302 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSV 350


>gi|317401435|gb|EFV82068.1| DapF protein [Achromobacter xylosoxidans C54]
          Length = 297

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 128/290 (44%), Gaps = 12/290 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  +V+D       +T +   AL         DQI+L+        D   R
Sbjct: 4   NFTKMHGAGNDFVVLDGVRQAIEMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC VRF+  +    R     E   GILV  E  D  ++VDMG  
Sbjct: 64  IFNADGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDEGDDEQVTVDMGST 123

Query: 124 ILDWKLIPLAR-------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
             D   +P                       P           V++ NPHA+  V+ ++ 
Sbjct: 124 RFDPAALPFDTAGLASRTEGQDTLWQLELDVPAGLPRSVALSAVAISNPHAVQVVD-NVD 182

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +A  G L+  HP F+  VN    ++    S+ LR  ERG G T ACG+ ACA+V A 
Sbjct: 183 TAPVAIVGPLIETHPRFARRVNAGFMQIVDRHSIRLRVHERGAGETLACGTGACAAVAAG 242

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
                 +  V V+  GG L I W+    + +TG A+  + G++DI    +
Sbjct: 243 IRRGLLDSPVRVQTRGGVLTIAWNGEQ-LRLTGPAESVFTGQVDIDKLVF 291


>gi|157377261|ref|YP_001475861.1| diaminopimelate epimerase [Shewanella sediminis HAW-EB3]
 gi|189082841|sp|A8G0W0|DAPF_SHESH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157319635|gb|ABV38733.1| Diaminopimelate epimerase [Shewanella sediminis HAW-EB3]
          Length = 280

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 5/279 (1%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+ ++    ++     T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIRVSTSNGKITLRLERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+L+   IP      +         P + +       VSMGNPH +  VE D+   D+ 
Sbjct: 121 IPVLEPGRIPFNAKKMEKTYLLQATNPDSTMQTFLFGAVSMGNPHCVLDVE-DIEAADVE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  F +GVN+   ++ +   + LR +ERG   T ACG+ ACA+ V      K
Sbjct: 180 GIGALLTRHERFPKGVNVGFMQIINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            +  V V + GG L I W      ++MTG A+  ++G++
Sbjct: 240 LDNCVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQI 278


>gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
           15053]
 gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
           15053]
          Length = 277

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + ++          +A   LS        D +++I   + A  D  +
Sbjct: 1   MKFTKMHGLGNDYVYVNCFKEKIGNPPEAARILSDRHFGVGSDGLIMICPSEKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      + + + ET+ G+       K+ +   I V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTNISVETLGGVKYLDLTVKDGKAVLIKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L  + IP+    D +  +   +    +        VSMGNPHA+ FV+ D+   
Sbjct: 119 DMGRPELKPERIPIVSGGDAVISEPIVVDGAIYRMTG----VSMGNPHAVIFVD-DVKGL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L + G     H  F + VN   ARV   E++++R WERG G T ACG+ ACA  VA   
Sbjct: 174 ELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACAVAVACIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+V++LGG LLIEW  + + V+MTG A   ++G++ I
Sbjct: 234 NGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277


>gi|85708150|ref|ZP_01039216.1| diaminopimelate epimerase [Erythrobacter sp. NAP1]
 gi|85689684|gb|EAQ29687.1| diaminopimelate epimerase [Erythrobacter sp. NAP1]
          Length = 269

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 101/277 (36%), Positives = 139/277 (50%), Gaps = 17/277 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           VDF KM G+GN  +V+D R      I++   +AL+  +     DQ++++    D   D  
Sbjct: 3   VDFTKMHGLGNDFVVLDARETPLPAISNATASALADRNTGVGCDQLIVLEPSDD--HDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DG EV++CGN  R V     S       T ET  G +  +    G  SVDMGEP
Sbjct: 61  MRIYNSDGGEVEACGNASRAVAMLHGS-----PATVETAGGAIRLEP-AQGGASVDMGEP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +W  IPLA + D  +       PV    L     V++GNPH IFFV+ D    DLA  
Sbjct: 115 RFEWDAIPLAYAMDTAN------MPVGWGELEAGIAVNVGNPHVIFFVQ-DADAVDLAEL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +    +F E +N+++A   S   L LR WERG GLT ACG+ ACA+ VA+       
Sbjct: 168 GPQIETDALFPERINVNVASRLSDNHLKLRVWERGAGLTRACGTGACATAVAAISRLHMK 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V+V + GG L I W     + MTG A + + G  +
Sbjct: 228 SPVTVSLPGGDLEIAWERGESIVMTGPATESFRGSFE 264


>gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
 gi|224954276|gb|EEG35485.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
          Length = 290

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 15/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++         ++    +S        D ++LI     A  D  +
Sbjct: 9   MKFTKMHGIGNDYVYVNCFEESIKNPAEVSKFVSDRHFGIGSDGLILISPS--AKADFRM 66

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
            I N DGS+ + CGNG+RCV    +      +   + ET+ GI   K   +     ++ V
Sbjct: 67  NIYNADGSQAEMCGNGIRCVAKYVYDYGLTDKTEISVETLAGIKYLKLQVENGKVATVEV 126

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL+ K IP+A   + +      +    +        VSMGNPHAI F++ ++   
Sbjct: 127 NMGAPILEPKKIPVAVENNPVVDVPVEVKGKTYHM----TCVSMGNPHAIIFMD-NVKEL 181

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+ + G     HP+F +  N     V    ++++R WERG   T ACG+ ACA+ VA   
Sbjct: 182 DIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLACGTGACATTVACIL 241

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284
            +KT   V+V +LGG L I W    + V+MTG A   ++G++ +  G
Sbjct: 242 NNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITLPEG 288


>gi|114769927|ref|ZP_01447537.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255]
 gi|114549632|gb|EAU52514.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255]
          Length = 280

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G+GN  ++ID R     + +     +        +DQ+++I   + A  D  +
Sbjct: 11  VPFLKMHGLGNDFVIIDARESESPVNAQIAKVIGDRHFGVGYDQLVVITKSKKA--DVEV 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV + +      +  T +T  G+LVA++ ++  ISV+MG P 
Sbjct: 69  VFWNSDGSLSDACGNASRCVAKLIMDENNIEEITLKTGSGVLVAQKGQNDLISVNMGHPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW +IPL    D ++               +P  V +GNPH +F V+ D+   DL S+G
Sbjct: 129 LDWDVIPLKEKVDLIEL----------PIEGSPGAVGIGNPHCVFVVD-DVNSVDLISWG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           + +  H +F +  N+   ++   +++  RT+ERG G T ACGS ACA  V +     T R
Sbjct: 178 SKIETHELFPKKTNVEFIQIIDQKNIRQRTFERGAGETLACGSGACAVAVVAHLKGLTER 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            VSV + GG L I W  +  ++MTG     ++G L
Sbjct: 238 NVSVHLDGGELNINWAKDG-IWMTGPTTLVFKGVL 271


>gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122282362|sp|Q04W97|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|122282673|sp|Q04X60|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 281

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  + ID    +  +T + I  +S        D ++ I + +    D  +
Sbjct: 4   LKFTKMEGIGNDYIYIDSTQANIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG--DFMM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
            + N DGS  + CGNG+RCV +++        K+   ET  G+L         N+   +S
Sbjct: 62  DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFVS 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL    IP+    ++   D+       +L       VSMGNPH + FV+ D   
Sbjct: 122 VNMGKPILVPSKIPVNWKDEEAIIDQTFEIAGKNL---KFTAVSMGNPHCVIFVD-DCDQ 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+ +HP+F + +N+    V   +    RTWERG G T ACG+ ACA  VA  
Sbjct: 178 FPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAVTVAGN 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              K+ + V + + GG L I+W ++ +V MTG AK+ + G++++
Sbjct: 238 LTGKSGKEVKIDLRGGTLRIQWQESGNVLMTGPAKEIFSGEIEV 281


>gi|293609895|ref|ZP_06692197.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828347|gb|EFF86710.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 281

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + S T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP          +  +   + +    N  VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFIAEQP----EALYTLELANDQNINIDVVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|238009464|gb|ACR35767.1| unknown [Zea mays]
          Length = 350

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 131/286 (45%), Gaps = 10/286 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A      +     D ++ +    +  
Sbjct: 65  SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-G 123

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +      FT  T  G +V +   DG +
Sbjct: 124 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQV 183

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    IP        ++              +   VSMGNPH + F  ++  
Sbjct: 184 KVDMGEPILSGLDIPTKL-LATKNKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 242

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA VV
Sbjct: 243 VDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVV 302

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A+    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 303 AAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 348


>gi|299769074|ref|YP_003731100.1| diaminopimelate epimerase [Acinetobacter sp. DR1]
 gi|298699162|gb|ADI89727.1| diaminopimelate epimerase [Acinetobacter sp. DR1]
          Length = 281

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 140/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + ++ I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + S T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFIAEQPEALYTLELANDRNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            + +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LSNSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|171056820|ref|YP_001789169.1| diaminopimelate epimerase [Leptothrix cholodnii SP-6]
 gi|229807513|sp|B1Y6S6|DAPF_LEPCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|170774265|gb|ACB32404.1| Diaminopimelate epimerase [Leptothrix cholodnii SP-6]
          Length = 297

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 132/292 (45%), Gaps = 15/292 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L         DQI+++       VD   
Sbjct: 3   LHFTKMQGAGNDFVVLDATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTPGVDFRY 62

Query: 65  RIINC-DGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMG 121
           RI N   G EV+ CGNG RC  RF+      +      ET+  ++      DG ++VDM 
Sbjct: 63  RIFNGGSGDEVEQCGNGARCFARFVRDNGLSQQVRVKVETVNSLIELHVEADGRVTVDMN 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR---------NPFVVSMGNPHAIFFVE 172
           +PI +  LIP   +         H        L+         +  V+SMGNPHA+  V 
Sbjct: 123 QPIFEHALIPFDSAGLSARPHNGHGNGFELWPLQLPGASLPSVDVAVLSMGNPHAVQRV- 181

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            D+    +A  G  +  H  F   VN    +V S   + LR +ERG G T ACG+ ACA+
Sbjct: 182 HDVDTAPVAEIGPRVETHARFPRHVNAGFMQVMSRREVRLRVFERGAGETLACGTGACAA 241

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           VVA   L   +  V V+  GG L I W    H V MTG A+  + G +D+ T
Sbjct: 242 VVAGIRLGWLDPEVDVQTRGGLLTIAWAGLGHPVLMTGPAQTVFTGDIDLPT 293


>gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
 gi|122300905|sp|Q088K8|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
          Length = 275

 Score =  223 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 142/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTNSGKITLRIERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+++   IP         +          +       +SMGNPH +  VE D+   ++ 
Sbjct: 121 VPVIEPSQIPFKAK-----KSEKTYLLQTPMQTYLCGAISMGNPHCVIQVE-DVQTVNVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ L +H  F +GVN+   +V +   + LR +ERG   T ACG+ ACA+        K
Sbjct: 175 EIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAVGQLQDK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            ++ V V + GG L+I W      ++MTG A+  ++G++ +
Sbjct: 235 LDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275


>gi|310814821|ref|YP_003962785.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25]
 gi|308753556|gb|ADO41485.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25]
          Length = 277

 Score =  223 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 101/275 (36%), Positives = 144/275 (52%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D RG    +T   + AL+       FDQ+ +I      + D  +
Sbjct: 9   LPFMKMHGLGNDFVVMDERGLPPRVTPALVAALADRNRGVGFDQMAII--TDGGNADLHL 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R+   R  + S T  T RG+L+A+E  +G  SV+MG P+
Sbjct: 67  TFFNADGSPSAACGNATRCIARYEMDRTGKTSLTITTDRGVLLAREEGNGLTSVNMGHPM 126

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            DW  IPLA   D +              L  P   SMGNPH  FFV+ D+   DLA+ G
Sbjct: 127 TDWDEIPLAEDVDTLAL----------PILGAPTATSMGNPHCTFFVD-DVMAIDLAAIG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  HP+F E  N+  A+V   + + +R WERG G+T A GS++CA+ VA+     T  
Sbjct: 176 PTIEHHPLFPERTNVQFAQVIGEDRIRMRVWERGTGITLASGSSSCATAVAAYRRGLTRA 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG L +EW D+  V+MTG     + G L
Sbjct: 236 KVEIVLDGGSLQVEWRDDG-VWMTGPTMHAFNGVL 269


>gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
 gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
 gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400]
          Length = 282

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 130/287 (45%), Gaps = 13/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++       N    AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVNCFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++                G  V         + R   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKKEITAETGAGVLTLQLFTGADGRVDRVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P L    IP+    D  D               N   VSMGNPH + FV+ D+ +
Sbjct: 119 VNMGKPRLTRAEIPMLG--DPGDGQVVGQPLNILHTTFNITCVSMGNPHCVIFVD-DVEN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H MF    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 176 FQVEKYGPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
               T + +   + GG L +EW ++  ++MTG A + + G++++ T 
Sbjct: 236 LNGLTEKNILNHLSGGDLELEWAEDGFLYMTGPATEVFSGEINLGTL 282


>gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri]
 gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri]
          Length = 327

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 19/293 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDA-SVDAF 63
           +FAK +G+GN  ++ID R      +T++    +         D ++     +     D  
Sbjct: 36  EFAKYQGLGNDFVLIDNRASDAVPVTAEQAAKMCDRNFGIGADGLIFAMPARPGTDEDYS 95

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +R+ N DGSE + CGNG+RC+ RF         + +   T+ G++  +   DG ++VDMG
Sbjct: 96  MRMFNSDGSEPEMCGNGIRCLARFVSDVDGSAPRKYKVWTLAGLIQPELRADGQVAVDMG 155

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF----------- 170
           +P+L+   +P   +    D                   VSMGNPH + F           
Sbjct: 156 KPVLEPANVPTKLAA-TKDSAAVRCEMDIDGEKWLVTAVSMGNPHCVTFGRAGDGELGAD 214

Query: 171 -VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +  + L+++G     H  F    N     V +   + +  WERG G T ACG+ A
Sbjct: 215 GPGLKVEDFALSTYGPKFESHVNFPARTNTEFTEVVNRGYVKMHVWERGAGATLACGTGA 274

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           CA+VVA     + +R   V++ GG L I W + + +V MTG A+  + G + +
Sbjct: 275 CATVVAGVLEGRVDRECVVELPGGPLEIHWREADGNVIMTGPAEPVFTGVITV 327


>gi|260549304|ref|ZP_05823524.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624]
 gi|260407710|gb|EEX01183.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624]
          Length = 281

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVAEEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803]
 gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803]
          Length = 368

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 141/288 (48%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R    +       SD +  +         D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFILVEGRDGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPPQ-G 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RF          +S++ ET  G+++ +  +DG 
Sbjct: 60  QGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  +++P   S D     R  +         +   V MGNPH +  V+ DL
Sbjct: 120 IRVDMGAPFLKPEMVPTLLSPDAKGLPRGEVSR--EGLTLSLAAVGMGNPHVVVPVD-DL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 + G  L   P+F    N+   +V   + L++R WERG G T ACG+ ACA++VA
Sbjct: 177 EAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           +  +  ++   +V + GG L I W      VFMTG A   ++G ++  
Sbjct: 237 AVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDGVMNPD 284


>gi|86136888|ref|ZP_01055466.1| diaminopimelate epimerase [Roseobacter sp. MED193]
 gi|85826212|gb|EAQ46409.1| diaminopimelate epimerase [Roseobacter sp. MED193]
          Length = 292

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 96/284 (33%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D R     IT      ++       FDQ+ LI        DA + 
Sbjct: 26  PFMKMHGLGNDFVVVDARSHPLEITPALARGIAHRQFGVGFDQLALIE---QGKGDAHLT 82

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RC+ R L     +      T RG L A +  +G  SV+MG P L
Sbjct: 83  FFNADGSTSAACGNATRCIARHLMDESGKSELHLTTDRGDLFACDAGNGLTSVNMGHPQL 142

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW+ IPL    D ++                P    MGNPH  FFVE D     L  FG 
Sbjct: 143 DWRDIPLREETDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAGLIPLTDFGP 191

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
               HP++ E  N+ +A +   + + +R WERGVG+T A GS++CA+ VA+     T R 
Sbjct: 192 RYEHHPLYPERTNVQVAHLVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRR 251

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           V + + GG L I+W D+  V+MTG     + G     T  +++ 
Sbjct: 252 VQIDLDGGTLWIDWRDDG-VWMTGPTMHVFSGTF---TAAFLES 291


>gi|114705322|ref|ZP_01438230.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506]
 gi|114540107|gb|EAU43227.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506]
          Length = 312

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 147/294 (50%), Positives = 197/294 (67%), Gaps = 1/294 (0%)

Query: 3   SSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + M V FA+M G+GN+I+V D+RG    I+  A  AL+  + T FDQIM IHD +    D
Sbjct: 17  ARMSVPFARMNGLGNEIVVADLRGSKTRISPQAARALAGHEATRFDQIMAIHDPRLDGTD 76

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A IRIIN DGSE ++CGNG RCVV+ L S   ++ FTFET  GI++A E  DG I+VDMG
Sbjct: 77  ALIRIINRDGSEAEACGNGTRCVVQALGSENGQRDFTFETRAGIIIAHEADDGMITVDMG 136

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P   W+ IPLA  F         IGP++   L +P V SMGNPHAIF+V++D++ YDL 
Sbjct: 137 RPRFGWEDIPLAEEFRDTRAIELQIGPIDAPVLHSPSVASMGNPHAIFWVKNDVWSYDLE 196

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            FG +L  HP+F E  N+SIA+VT+ +SL LRTWERGVGLT ACGSAACA+ V++    +
Sbjct: 197 RFGPVLEHHPIFPERANISIAQVTASDSLTLRTWERGVGLTLACGSAACAAAVSAARTGR 256

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
           T+RAV+V + GG LLI W +++ V MTG A   W G+LD  TG +++  +++  
Sbjct: 257 TDRAVTVTVPGGDLLIHWREDDKVMMTGPATWMWSGRLDPATGDFVRDAQEEAE 310


>gi|254467049|ref|ZP_05080460.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I]
 gi|206687957|gb|EDZ48439.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I]
          Length = 266

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 141/281 (50%), Gaps = 19/281 (6%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           KM G+GN  +V+D R     +T      ++       FDQ+ ++    +   DA +   N
Sbjct: 2   KMHGLGNDFVVLDARAQDIAVTPAMARGIAHRQFGVGFDQLAVL---TNGKGDAHLTFYN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+ R L     +      T RG L A++  +G  SV+MG P LDW+
Sbjct: 59  ADGSTSGACGNATRCIARHLILETGKPELHLTTDRGDLYARDAGNGLTSVNMGAPQLDWQ 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA   D ++                P    MGNPH  FFVE D     L  FG    
Sbjct: 119 DIPLAEEADTLEL----------PIEGGPTATGMGNPHCTFFVE-DAEVIPLEEFGQRYE 167

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP++ +  N+ +A+VT  + + +R WERGVG+T A GS++CA+ VA+     T R V +
Sbjct: 168 HHPLYPQRTNVQVAQVTGPDRIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRKVQI 227

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            + GG L I+W ++  V+MTG     ++G L   T ++++ 
Sbjct: 228 DLDGGTLWIDWAEDG-VWMTGPTMHVFDGTL---TREFLES 264


>gi|289207305|ref|YP_003459371.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix]
 gi|288942936|gb|ADC70635.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix]
          Length = 278

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VDAF 63
           ++F KM G+GN  +VID       +    +  L+        DQI+L+    D +     
Sbjct: 3   LEFTKMHGLGNDFVVIDGTRQDVRLDEATLRQLADRHFGIGCDQILLVEPPGDPTQALFR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +   + +    ET+ G +V     D  + V+MG
Sbjct: 63  YRIFNADGSEVEQCGNGARCFARFVREQGLTEAREIPVETLGGRIVLHVEDDEHVRVNMG 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P+   + IPL    +         G    L       VSMGNPHA+  V+ D+    + 
Sbjct: 123 QPVFTPEQIPLVAEHEADAYTLDVQGHAITLG-----AVSMGNPHAVLLVD-DVASAPVT 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G L+ +H  F   VN+  A +     +DLR +ERGVG T ACGS A A++      + 
Sbjct: 177 EVGPLIERHECFPRRVNVGFAALRDRTHVDLRVFERGVGETLACGSGAAAAMAILRRRNL 236

Query: 242 TNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDI 281
            +  V V + GG L++ W+      V++TG A   + G +D+
Sbjct: 237 VDDEVEVSLPGGTLVLSWNAQAEAPVWLTGPATTVFNGWIDL 278


>gi|89052809|ref|YP_508260.1| diaminopimelate epimerase [Jannaschia sp. CCS1]
 gi|88862358|gb|ABD53235.1| diaminopimelate epimerase [Jannaschia sp. CCS1]
          Length = 281

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 137/275 (49%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID RG    +T     AL        FDQ+ +I    D+  D  +
Sbjct: 13  LPFLKMHGLGNDFVVIDARGVARAMTPALARALGDRHRGVGFDQLAVIETGTDS--DVEL 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R       +   T  T RG+L A +  DG  SV+MGEP+
Sbjct: 71  TFWNADGSTAGACGNATRCIARREMELTGKHRITLRTERGLLEAIDVGDGLTSVNMGEPV 130

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           + W+ IPL  + D ++                P    MGNPH  FFVE D    DL + G
Sbjct: 131 MGWRDIPLKGACDTLNL----------PIDGTPVATGMGNPHCTFFVE-DADAIDLETLG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
               +HP+F +  N+  A V   + L +R WERGVG+T A GS++CA  V++     T R
Sbjct: 180 AKYERHPLFPQRTNVQFAHVVGPDHLRMRVWERGVGVTLASGSSSCAVAVSAARRGLTGR 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG + ++W  +  V+MTG     + G+L
Sbjct: 240 KVRLTLDGGEISVDWRSDG-VWMTGPTAHVFSGEL 273


>gi|255291937|dbj|BAH90425.1| diaminopimelate epimerase [uncultured bacterium]
          Length = 305

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 139/303 (45%), Gaps = 25/303 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L+        DQI+ +       VD   
Sbjct: 3   IRFTKMQGAGNDFVVLDETTALLGLSAAQYRWLADRHFGVGADQILSVRAAPGPGVDFEY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DG EV+ CGNG RC VR++  R    ++    +   G++   E  DG ++VDMG 
Sbjct: 63  VIHNADGGEVEQCGNGARCFVRYVRERGLTDKRRVHVQVRHGVIELVEQADGRVTVDMGA 122

Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVN-------------HLFLRNPFVVSMG 163
           P+ +   IP                  +   P++                + N  V+SMG
Sbjct: 123 PVFELPRIPFDPAGLTPVPAGADAAHLWQWWPLDLGRSAATAVAEPASDAIVNVAVLSMG 182

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           NPHA+  V  D+    +A  G L+  HP F + VN    ++    ++ LR +ERGVG T 
Sbjct: 183 NPHAVQLV-ADVEAAPVARHGALIESHPAFPKRVNAGFMQILDRAAVRLRVYERGVGETL 241

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281
           ACG+ ACA+VVA   L   +  V V   GG L IEW     + VFMTG A   +EG+ +I
Sbjct: 242 ACGTGACAAVVAGVRLGLLDSRVDVHTRGGVLSIEWAGGERDPVFMTGPATTVFEGETEI 301

Query: 282 KTG 284
              
Sbjct: 302 PEL 304


>gi|296284754|ref|ZP_06862752.1| diaminopimelate epimerase [Citromicrobium bathyomarinum JL354]
          Length = 269

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 17/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  +++D R      + +  I AL+       FDQ++++    +A  D  
Sbjct: 3   LPFIKMHGLGNDFVILDGREIDLPSLDTAQIRALADRHRGIGFDQLIVLGPSDEA--DLA 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DG EV++CGN  R V             +  T  G L  +          MG  
Sbjct: 61  MRIHNADGGEVEACGNATRAVAVLHGQ-----PASIATAGGTLRVRPGE-NMAEAAMGRA 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W+ IPLA + D  +       P+    L  P  V++GNPH +FFV+ D     L + 
Sbjct: 115 RFHWQDIPLAYAMDTRE------MPLGWDMLERPSAVNVGNPHIVFFVD-DARAVPLETL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P+F E +N+++A++ S +++ LR WERG GLT ACG+ ACA+   +      +
Sbjct: 168 GPEIETDPLFPERINVNVAQILSRKAIRLRVWERGAGLTLACGTGACATATVAYRQGLVD 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             V V + GG L I   +   + M G A + + G  ++ 
Sbjct: 228 AEVEVTLPGGTLTIRHDEEGGIHMAGPASEAFRGTFELD 266


>gi|78224185|ref|YP_385932.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
 gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
          Length = 282

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 128/285 (44%), Gaps = 13/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +     AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVNCFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +         + +   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKKEITAETGAGILTLQLVPGADGKIEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L    IP+A   +  D               N   VSMGNPH + FV+ D+  
Sbjct: 119 VNMGVPRLKRAEIPMAG--EPADGQIVSQPLNILHTTFNITCVSMGNPHCVIFVD-DVES 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 176 FQVEKYGPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               T + +   + GG L +EW D+  ++MTG A + + G++D+ 
Sbjct: 236 LNCLTEKKILNHLSGGDLELEWADDGFLYMTGPATEVFSGEIDLA 280


>gi|184159194|ref|YP_001847533.1| diaminopimelate epimerase [Acinetobacter baumannii ACICU]
 gi|332876023|ref|ZP_08443809.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059]
 gi|229807491|sp|B2HX82|DAPF_ACIBC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|183210788|gb|ACC58186.1| Diaminopimelate epimerase [Acinetobacter baumannii ACICU]
 gi|323519138|gb|ADX93519.1| diaminopimelate epimerase [Acinetobacter baumannii TCDC-AB0715]
 gi|332735889|gb|EGJ66930.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059]
          Length = 281

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      K           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVAEEPKALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|226505860|ref|NP_001141344.1| hypothetical protein LOC100273435 [Zea mays]
 gi|194704094|gb|ACF86131.1| unknown [Zea mays]
 gi|223948299|gb|ACN28233.1| unknown [Zea mays]
          Length = 353

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A      +     D ++ +    +  
Sbjct: 65  SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-G 123

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +      FT  T  G +V +   DG +
Sbjct: 124 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQV 183

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    IP        ++              +   VSMGNPH + F  ++  
Sbjct: 184 KVDMGEPILSGLDIPTKL-LATKNKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 242

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 243 VLQVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACA 302

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            VVA+    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 303 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 351


>gi|118594102|ref|ZP_01551449.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181]
 gi|118439880|gb|EAV46507.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181]
          Length = 286

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 93/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G GN  +VI+    +  +TS  I  L+       FDQ+++I     A  +   
Sbjct: 7   IPFSKMHGSGNDFVVINQIDNNYRLTSSQIKKLADRNFGIGFDQLLIIEKPTQAPAEFKY 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC   +  +         T ET  G++V    +DG ISVDMG 
Sbjct: 67  RIFNADGSEVSQCGNGARCFFHYLRMKKLSSSNEITVETQSGMIVLSYKKDGLISVDMGV 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ D+K IP       +  +               + +SMGNPHA+  +   L   DL  
Sbjct: 127 PVYDYKQIPF------ISTNTTLPTVTVDDKSYEFYPISMGNPHAVIKL-ASLQGVDLVK 179

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L K   F + VN+   +V    +L L+ +ERG G+T ACGS ACA+ V +      
Sbjct: 180 IGKVLQKSAAFPDSVNVGFVQVIDKHTLSLKVYERGSGMTLACGSGACAAGVVAIQKRWA 239

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              VSV + GG L I       V + G A+  ++G+L+
Sbjct: 240 QNPVSVLVDGGVLTINLTPQGSVELLGPAEWIFDGELN 277


>gi|222054498|ref|YP_002536860.1| Diaminopimelate epimerase [Geobacter sp. FRC-32]
 gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter sp. FRC-32]
          Length = 278

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D         +D AI   + +     D ++LI     A V   +
Sbjct: 1   MKFTKMHGAGNDYVYVDCFSEQVENPADVAIKVSNRNFGIGSDGLILIMPSDKAHV--RM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +          N+   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P L    IP++   D                  N    SMGNPH + FV+ D+ +
Sbjct: 119 VNMGKPRLTRGEIPMSGPADARVVSEPLNILHT---TFNITCASMGNPHCVIFVD-DVDN 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 175 FQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T++ +   + GG L +EW ++  ++MTG A + + G++ I
Sbjct: 235 LNGLTDKKILNHLSGGDLELEWSEDGFLYMTGPAVEVFSGEIAI 278


>gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
 gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
          Length = 281

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 129/283 (45%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  + +D+      +     A            D ++LI     A  DA 
Sbjct: 1   MKFTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPSDKA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117
           +R+ N DGSE + CGNG+RCV +++      +        G       +  ++ R   + 
Sbjct: 59  MRMFNADGSEAEMCGNGLRCVAKYVYDHDIARKEELTLETGAGLLTVQVFPEDGRVKQVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL+   IP   + D        +G            VSMGNPH I FV+  L  
Sbjct: 119 VNMGQPILESAKIPTTLAGDPPVEADLQVGDQ----TLKVTCVSMGNPHCITFVDK-LSD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  + KH +F   VN     V S   L++R WERG G T ACG+ ACA  VA  
Sbjct: 174 EWVHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGACAVAVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
              +  R V++ +LGG L +EW  +   VFMTG A + + G+ 
Sbjct: 234 LSGRCERKVTIHLLGGDLELEWSEETGEVFMTGPAVEVYSGEW 276


>gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
 gi|153796512|gb|EDN78932.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
          Length = 292

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++       N +  A+   + +     D ++LI+  + A  D  +
Sbjct: 16  MKFTKMQGLGNDYVYVNGFEERIENPSEMAVKVSNRNFGVGSDGLILINPSEKA--DFEM 73

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      +   + ET+ GI       ++ +   + V
Sbjct: 74  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVEDGKVVLVRV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL    IP+     +       +    +        VSMGNPHA+ F++ D+ H 
Sbjct: 134 DMGSPILTPAQIPVIADEAEAVAVPILVDETEYQM----TCVSMGNPHAVIFMD-DIEHL 188

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G     H  F   VN    +V    +  +R WERG G T ACG+ ACA  VA   
Sbjct: 189 EIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGACAVAVACIL 248

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              T   V+VK+LGG LLIEW  + N ++MTG A+  ++G   
Sbjct: 249 GGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDGVWK 291


>gi|169795021|ref|YP_001712814.1| diaminopimelate epimerase [Acinetobacter baumannii AYE]
 gi|213158316|ref|YP_002320367.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057]
 gi|215482569|ref|YP_002324761.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294]
 gi|260556501|ref|ZP_05828719.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606]
 gi|301345398|ref|ZP_07226139.1| diaminopimelate epimerase [Acinetobacter baumannii AB056]
 gi|301511588|ref|ZP_07236825.1| diaminopimelate epimerase [Acinetobacter baumannii AB058]
 gi|301594792|ref|ZP_07239800.1| diaminopimelate epimerase [Acinetobacter baumannii AB059]
 gi|332854281|ref|ZP_08435281.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150]
 gi|332865657|ref|ZP_08436483.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113]
 gi|226724200|sp|B7GY71|DAPF_ACIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724201|sp|B7I5Y5|DAPF_ACIB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807490|sp|B0VDN4|DAPF_ACIBY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169147948|emb|CAM85811.1| diaminopimelate epimerase [Acinetobacter baumannii AYE]
 gi|213057476|gb|ACJ42378.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057]
 gi|213989050|gb|ACJ59349.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294]
 gi|260409760|gb|EEX03060.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606]
 gi|332728097|gb|EGJ59486.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150]
 gi|332735178|gb|EGJ66258.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113]
          Length = 281

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVAEEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|16127916|ref|NP_422480.1| diaminopimelate epimerase [Caulobacter crescentus CB15]
 gi|221236736|ref|YP_002519173.1| diaminopimelate epimerase [Caulobacter crescentus NA1000]
 gi|21362486|sp|Q9A280|DAPF_CAUCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767096|sp|B8GVW2|DAPF_CAUCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|13425448|gb|AAK25648.1| diaminopimelate epimerase [Caulobacter crescentus CB15]
 gi|220965909|gb|ACL97265.1| diaminopimelate epimerase [Caulobacter crescentus NA1000]
          Length = 288

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 8/279 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN------THFDQIMLIHDFQDASVD 61
           F KM G+GN  +VI       + T + I A++             DQ++ I   +     
Sbjct: 5   FLKMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGAS 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A++R  N DG    +CGNG RCV   L     + +  F+T+ G L      D  ++VDMG
Sbjct: 65  AYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAAGDKLVTVDMG 124

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P LDW  IPLA   +  +R    +GP++   +  P  VSMGNPH +FFV+  +      
Sbjct: 125 PPGLDWTQIPLAEEMN-TERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPVTDDFAR 183

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+L+  HP+F EGVN+  A + S + + L+ WERG GLT ACG+ ACA+ VA+     
Sbjct: 184 GTGSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACAAQVAAVRRGL 243

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           T+R   V+   G L IEW + + HV MTG    E+ GKL
Sbjct: 244 TDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282


>gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus]
          Length = 285

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 8/280 (2%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           + +V F+K +G+GN  +++D R   +  +T++   +L         D ++      D  +
Sbjct: 4   TKLVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSD-EM 62

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV 118
           D  +RIIN DGSE + CGNG+RC+ RFL     +K   +   T+ G ++     DG ++V
Sbjct: 63  DYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPMAREDGLVTV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L+   +P     +           V+         VSMGNPHA+ FV  D+   
Sbjct: 123 DMGPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKD-WEVTCVSMGNPHAVVFV-PDVDAL 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G     HP F   +N    +V +   + +  WERG G+T ACG+ ACA VVAS  
Sbjct: 181 DLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTGACALVVASVL 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
               +R  +V + GG L IEW + +  V+MTG A+  ++G
Sbjct: 241 AGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280


>gi|307943539|ref|ZP_07658883.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4]
 gi|307773169|gb|EFO32386.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4]
          Length = 321

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 125/298 (41%), Positives = 175/298 (58%), Gaps = 5/298 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M S+ V F KM G+GN  +V D R    N+  + I AL   D    FDQ++ +       
Sbjct: 15  MASARVPFLKMNGLGNDFVVWDARSSAFNLPKEKIAALGNRDTGIGFDQMITVERSPL-G 73

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-RDGSISV 118
           VDAF+RI NCDGS+V +CGN  RCV R L         T ET  G+L A       +++V
Sbjct: 74  VDAFMRIHNCDGSQVDACGNATRCVGRLLMEEKSTDRATIETKAGLLNAFATAVPRTVTV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L+W  IPLA  F         IGP++  +L  P  +SMGNPHAIF+V+ D+  +
Sbjct: 134 DMGKPRLNWDEIPLAEEFYDTRAIELQIGPIDAPYLHTPAAISMGNPHAIFWVK-DVEAH 192

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G LL  HP+F EG N+S+A V +   + L+ WERG GLT ACG+AACA+ VA+  
Sbjct: 193 DLGTIGPLLEHHPVFPEGANISLAHVFAENQIRLKVWERGAGLTQACGTAACAAAVAAAR 252

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
             K  R  ++ + GG + IEW + ++HV MTG  + E+EG++D+ T +W +    D+A
Sbjct: 253 DDKAGRKSTIHLPGGPIEIEWREGDDHVLMTGLTEVEFEGEVDLDTLEWQRTGPGDDA 310


>gi|254508790|ref|ZP_05120901.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16]
 gi|219548247|gb|EED25261.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16]
          Length = 269

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 130/273 (47%), Gaps = 10/273 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   RI N 
Sbjct: 1   MHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF+  +     ++    T +G +V     D  ++V+MG P  + 
Sbjct: 61  DGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP          ++ +I       L     VSMGNPH    V DD+   D+ + G LL
Sbjct: 121 NKIPFKAK----QTEKTYILRAEDKTLFCG-AVSMGNPHV-VTVVDDVATADVETLGPLL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    +V S   ++LR +ERG G T ACGS AC +V         +  V+
Sbjct: 175 ESHERFPERVNAGFMQVISRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLDEHVT 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           V + GG L I W      +FMTG A   ++G+L
Sbjct: 235 VHLPGGDLKISWKGPGKPLFMTGPATHVFDGQL 267


>gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
 gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
          Length = 278

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +  +D AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVNCFSERVDNPADVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +          N+   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVGKKEISAETGAGILTLQLFTNEANKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L    IP+         +             +    SMGNPH + FV+ D+ +
Sbjct: 119 VNMGRPRLTRSEIPMTGEAGAKVINEPLNILHT---TFHITCASMGNPHCVIFVD-DVEN 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G ++  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 175 FQVEKYGPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T + +   + GG L +EW ++  ++MTG A + + G+++I
Sbjct: 235 LNGLTEKKILNHLSGGDLELEWAEDGFLYMTGPAVEVFSGEIEI 278


>gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
 gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
          Length = 282

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 11/283 (3%)

Query: 11  MEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V+D        +T   + AL+        DQ++L+        D   RI N
Sbjct: 1   MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           CDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG P+  
Sbjct: 61  CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120

Query: 127 WKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              +P  A   D     R  + P++     R    VSMGNPHA+  V+ D+  Y +   G
Sbjct: 121 PAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-DVEAYPVLEEG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A       + 
Sbjct: 180 PLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239

Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282


>gi|239500989|ref|ZP_04660299.1| diaminopimelate epimerase [Acinetobacter baumannii AB900]
          Length = 281

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|229807519|sp|A3M804|DAPF_ACIBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|193078107|gb|ABO13048.2| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978]
          Length = 281

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|225439868|ref|XP_002278566.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 370

 Score =  221 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F K  G+GN  +++D R   +  +T +    L         D ++         
Sbjct: 82  ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPG-ING 140

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +   ++SFT  T  G++V +   DG +
Sbjct: 141 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 200

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171
            VDMG+PIL    +P     +  D+              N   VSMGNPH + F      
Sbjct: 201 KVDMGKPILKALDVPTKLPAN-KDQSVVKSELNVDGVSWNVTCVSMGNPHCVTFGTKGGQ 259

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +LA  G     H MF    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 260 NLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGACA 319

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            VVA+       R+ +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 320 VVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 370


>gi|86148172|ref|ZP_01066470.1| diaminopimelate epimerase [Vibrio sp. MED222]
 gi|218710944|ref|YP_002418565.1| diaminopimelate epimerase [Vibrio splendidus LGP32]
 gi|254767122|sp|B7VMD4|DAPF_VIBSL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85834019|gb|EAQ52179.1| diaminopimelate epimerase [Vibrio sp. MED222]
 gi|218323963|emb|CAV20325.1| Diaminopimelate epimerase [Vibrio splendidus LGP32]
          Length = 276

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/277 (33%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
            F+KM G+GN  +V+D    +   + D I  L+       FDQ++++    D   D   R
Sbjct: 4   HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123
           I N DGSEV+ CGNG RC  RF+  +     ++    T +G +V K   +  I+V+MG P
Sbjct: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDLITVNMGIP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   IP          ++ +I   +   L     VSMGNPH    V DD+   D+ + 
Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  H  F E VN    +V + E + LR +ERG G T ACGS AC +V          
Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             V V++ GG L I W      + MTG A   ++G+L
Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLLMTGPATHVFDGQL 274


>gi|22124300|ref|NP_667723.1| diaminopimelate epimerase [Yersinia pestis KIM 10]
 gi|45442954|ref|NP_994493.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594545|ref|YP_068736.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953]
 gi|108806175|ref|YP_650091.1| diaminopimelate epimerase [Yersinia pestis Antiqua]
 gi|108810285|ref|YP_646052.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|145600712|ref|YP_001164788.1| diaminopimelate epimerase [Yersinia pestis Pestoides F]
 gi|153949600|ref|YP_001399202.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758]
 gi|153997099|ref|ZP_02022232.1| diaminopimelate epimerase [Yersinia pestis CA88-4125]
 gi|162421020|ref|YP_001605134.1| diaminopimelate epimerase [Yersinia pestis Angola]
 gi|165926336|ref|ZP_02222168.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939113|ref|ZP_02227664.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011684|ref|ZP_02232582.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213579|ref|ZP_02239614.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401857|ref|ZP_02307345.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420950|ref|ZP_02312703.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426291|ref|ZP_02318044.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170026222|ref|YP_001722727.1| diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII]
 gi|186893545|ref|YP_001870657.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+]
 gi|218930848|ref|YP_002348723.1| diaminopimelate epimerase [Yersinia pestis CO92]
 gi|229837175|ref|ZP_04457340.1| diaminopimelate epimerase [Yersinia pestis Pestoides A]
 gi|229839535|ref|ZP_04459694.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900098|ref|ZP_04515235.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900456|ref|ZP_04515585.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|270488810|ref|ZP_06205884.1| diaminopimelate epimerase [Yersinia pestis KIM D27]
 gi|294505509|ref|YP_003569571.1| diaminopimelate epimerase [Yersinia pestis Z176003]
 gi|17380442|sp|P46357|DAPF_YERPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81640737|sp|Q66FZ5|DAPF_YERPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123246795|sp|Q1CNH8|DAPF_YERPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123372750|sp|Q1CBM6|DAPF_YERPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225764|sp|A4TRA3|DAPF_YERPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167012039|sp|A7FD74|DAPF_YERP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813257|sp|B2K072|DAPF_YERPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813258|sp|A9R8K5|DAPF_YERPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813259|sp|B1JPE1|DAPF_YERPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21957072|gb|AAM83974.1|AE013639_3 diaminopimelate epimerase [Yersinia pestis KIM 10]
 gi|45437821|gb|AAS63370.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51587827|emb|CAH19430.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953]
 gi|108773933|gb|ABG16452.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|108778088|gb|ABG12146.1| diaminopimelate epimerase [Yersinia pestis Antiqua]
 gi|115349459|emb|CAL22432.1| diaminopimelate epimerase [Yersinia pestis CO92]
 gi|145212408|gb|ABP41815.1| diaminopimelate epimerase [Yersinia pestis Pestoides F]
 gi|149289405|gb|EDM39483.1| diaminopimelate epimerase [Yersinia pestis CA88-4125]
 gi|152961095|gb|ABS48556.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758]
 gi|162353835|gb|ABX87783.1| diaminopimelate epimerase [Yersinia pestis Angola]
 gi|165912886|gb|EDR31512.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921860|gb|EDR39057.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989453|gb|EDR41754.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205252|gb|EDR49732.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961079|gb|EDR57100.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048750|gb|EDR60158.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054810|gb|EDR64614.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752756|gb|ACA70274.1| Diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII]
 gi|186696571|gb|ACC87200.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+]
 gi|229682475|gb|EEO78562.1| diaminopimelate epimerase [Yersinia pestis Nepal516]
 gi|229686878|gb|EEO78957.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695901|gb|EEO85948.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706118|gb|EEO92127.1| diaminopimelate epimerase [Yersinia pestis Pestoides A]
 gi|262363575|gb|ACY60296.1| diaminopimelate epimerase [Yersinia pestis D106004]
 gi|262367503|gb|ACY64060.1| diaminopimelate epimerase [Yersinia pestis D182038]
 gi|270337314|gb|EFA48091.1| diaminopimelate epimerase [Yersinia pestis KIM D27]
 gi|294355968|gb|ADE66309.1| diaminopimelate epimerase [Yersinia pestis Z176003]
 gi|320013557|gb|ADV97128.1| diaminopimelate epimerase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 274

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +        + +    H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PDFEPQTVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V S + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           N  V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 235 NENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDGFIHL 274


>gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
 gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
          Length = 282

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 11/283 (3%)

Query: 11  MEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V+D        +T   + AL+        DQ++L+        D   RI N
Sbjct: 1   MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           CDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG P+  
Sbjct: 61  CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120

Query: 127 WKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              +P   S      +              R    VSMGNPHA+  V+ D+  Y +   G
Sbjct: 121 PAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-DVEAYPVLEEG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+ +H  F + VN    ++ S   + LR +ERG G T ACG+ ACA+V A       + 
Sbjct: 180 PLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239

Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
            V+V   GG L I W     +   + M G A   +EG++D+  
Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282


>gi|262376586|ref|ZP_06069814.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145]
 gi|262308296|gb|EEY89431.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145]
          Length = 281

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      +    I  L+       FDQ++++      S D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDPVTIQRLANRNFGIGFDQLLVVEPPDVPSADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  +F+  R    +     +T  GI+  +   +G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFAKFVHDRQLTTKTKIKVQTKSGIVEPELGANGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP          +  +   +         VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPQEIPFVADAP----ESLYDIDLAGGEKLTIDVVNMGNPHAVTIV-PDVIAADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F   VN    ++   +   LR +ERGVG T ACG+ ACA+ ++      
Sbjct: 177 RIGPQVEAHARFPARVNAGFMQIIDEKHARLRVYERGVGETLACGTGACAAAISGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  V +++ GG L IEW + + V+MTG     +EG+LD++
Sbjct: 237 LSSKVEIELAGGKLQIEWKEGDVVWMTGPTATVYEGRLDLR 277


>gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
 gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
          Length = 323

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 135/285 (47%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++ID R         N     +  +         D ++L    + A
Sbjct: 1   MLQFSKYQGLGNDFVLIDGREGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  ++I N DGS  + CGNG+RC+ RF   +   +  + +  ET+ GI+      DG 
Sbjct: 60  DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P LD + IP   +       +            N   V MGNPH I  VE DL
Sbjct: 120 ICVDMGSPFLDPESIPTTLTIGSAGLPQGEC--HLGGTSLNVAAVGMGNPHVIVPVE-DL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                  +G +L KH  F    N+   ++ S   L++R WERG G T ACG+ ACAS+VA
Sbjct: 177 ESIPFEKWGQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACASLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L  ++    V + GG L I W      VFMTG A+  ++G L
Sbjct: 237 ACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDGVL 281


>gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
 gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
          Length = 281

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 138/288 (47%), Gaps = 16/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ G+GN  ++++     G  D+  + A            D ++L+ D      D 
Sbjct: 1   MHFTKVHGLGNDFILVNAGMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLDS--GVADV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----I 116
            +RIIN DGSE + CGN +RCV ++L       +     ET+ GI+V +  +       +
Sbjct: 59  RMRIINSDGSEAEMCGNAIRCVAKYLYEHGIVRKDEIKVETLAGIIVPQIIQKNGRVEAV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P L+ + IP+  +  ++  +   +             VSMGNPH + FV  DL 
Sbjct: 119 RVDMGAPRLERQEIPMLGTPGQVVNEPLQVNGQTFKI----TAVSMGNPHCVIFV-PDLS 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G  +  HP F    N+   +V S   + +  WERG G T ACG+ ACA   A 
Sbjct: 174 VIPLNQIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACAVATAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                T R+V+V + GG L IEW DN  ++MTG A++ + G+  +  G
Sbjct: 234 VLNGLTARSVTVHLPGGSLHIEWADNGRLYMTGPAEEVFNGEYIVYNG 281


>gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus sp. 18P13]
          Length = 279

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++       N    ++           D ++LI   Q A  D  +
Sbjct: 1   MKFTKMQGIGNDYIYVNCFEEQVVNPEQLSVRLSDRRFGIGGDGLILIMPSQIA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           RI N DGSE   CGNG RC+ +++       +   T ET  GI   + +  G     ++V
Sbjct: 59  RIFNADGSEAMMCGNGTRCIGKYVYEHGLTNKTHITLETNSGIKYLELHCTGDQVTSVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ IL  + IP+     +    +          L     VS+GNPHA+ F +  +   
Sbjct: 119 DMGKAILTPREIPVESDSQEPFVAKPVQVG---DRLERLTCVSVGNPHAVVFCDR-VEDL 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G L   H +F + VN    RV    +L +R WERG G T ACG+ ACA+ VA+  
Sbjct: 175 DLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACATTVAAVL 234

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                    + VK+ GG L I +  +  V MTG A++ ++G++++
Sbjct: 235 NGYCPQGEPILVKLRGGDLTITYQADGTVMMTGPAEEVFQGEINL 279


>gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
 gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
          Length = 318

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 16/293 (5%)

Query: 1   MQSSM-VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQD 57
           M S+  + F+K +G+GN  +++D R   + + T +    +         D ++       
Sbjct: 26  MASAKPLTFSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVIFALPP-V 84

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
              D  +RI N DGSE + CGNG+RC+ +F         + +   T+ G++  +   DG 
Sbjct: 85  GDTDLTMRIFNSDGSEPEMCGNGIRCLAKFVSDIDNAAPRKYKIHTLAGLIQPEMLADGQ 144

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---- 171
           + VDMG PIL+   +P   +             V          VSMGNPHA+ +     
Sbjct: 145 VRVDMGTPILEGPKVPTTLA-PTQGSTVVQQDLVVEGKTYKVTCVSMGNPHAVIYSCDGE 203

Query: 172 --EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             + D    +LA+ G    ++ +F    N     V S   + +  WERG G T ACG+ A
Sbjct: 204 PIKIDDLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRTLACGTGA 263

Query: 230 CASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           CA VVA     + +R     V + GG L IEW   +NH++MTG A+  + G+L
Sbjct: 264 CALVVAGILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316


>gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
 gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
          Length = 278

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +G GN  +++D    +  +  + A            D ++ +     A  D  +
Sbjct: 1   MRFSKWQGCGNDFVLVDCFKENVSDFAAFAKKVCDRHYGIGGDGVLYVLPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRD----GSISV 118
           RI N DGSE + CGNG+RC           +++ FT ET  GILV +   +      + V
Sbjct: 59  RIFNTDGSEAEMCGNGIRCFARYLHDFGLTEKEEFTVETGAGILVPRLQIEAGKVTGVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP+L+ + IP+                           VSMGNPH + FVE D   +
Sbjct: 119 DMGEPVLEGEKIPVTG---FGMNRVIEEDIEVKGKTYKMTCVSMGNPHCVIFVE-DAEAF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G     HP F    N     V   + + +R WERG  +T ACG+ +CA+ VA   
Sbjct: 175 PIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCATGVAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             +T+R V V++ GG L +EW +  NHVFMTG A+  + G++D
Sbjct: 235 TGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEID 277


>gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
 gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
          Length = 290

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 98/277 (35%), Positives = 131/277 (47%), Gaps = 10/277 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
            F KMEG+GN  +V+D    +  +  +    ++        DQI+L+        D   R
Sbjct: 14  PFTKMEGLGNDFVVLDGVRRNFLLDPETCQRIAHRHYGIGCDQILLVEPASSPDCDFRYR 73

Query: 66  IINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG EV  CGNG RC            ++S   ET  G L  + + DG+++VDMG P
Sbjct: 74  IFNADGGEVGQCGNGARCFALFVRRAGLTDKRSIRVETASGPLELQVHDDGTVTVDMGVP 133

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            LD   IP          +       +H+ L     V MGNPHA+  VE D+    +A  
Sbjct: 134 RLDPADIPFRAPA--AANNYRLDLGQDHIELA---AVGMGNPHALLRVE-DVRGAPVAEI 187

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G LL  HP F E  N+    + S  +L LRTWERG G T ACGS ACA+VVA        
Sbjct: 188 GPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAVVAGRGWGALR 247

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             V V++ GG L I W     H+ MTG A+  ++G  
Sbjct: 248 ERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDGVW 284


>gi|254504487|ref|ZP_05116638.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11]
 gi|222440558|gb|EEE47237.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11]
          Length = 293

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 119/287 (41%), Positives = 164/287 (57%), Gaps = 5/287 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V D R     +T D I  L        FDQ++ +       VDAF+RI N 
Sbjct: 1   MNGLGNDFVVWDAREKPLRLTKDQIAKLGDREHGIGFDQMITVERST-CGVDAFMRIHNS 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILDWK 128
           DG +V +CGN  RC+ R L     +   T ET  G+L A +     +++VDMG+P L+W 
Sbjct: 60  DGGQVDACGNATRCIGRLLMEENAKDLVTIETNAGLLHAFDAAGLRNVTVDMGKPRLNWD 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA  F         IGP++   L  P VV+MGNPHAIF+V+ D+  YDLA  G LL 
Sbjct: 120 QIPLAEEFADTRAIELQIGPIDEPILHTPAVVNMGNPHAIFWVK-DVEAYDLARVGPLLE 178

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
           +HP+F EG N+S+A +     + ++ WERG GLT ACG+AACA  VA+    KT R  ++
Sbjct: 179 RHPVFPEGANISLAHIFDDNQIRVKVWERGAGLTLACGTAACAVGVAAARDDKTGRKTTI 238

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            + GG + IEW + + HV MTG  + E+EG++DI+T  W K    D 
Sbjct: 239 HLPGGPIGIEWREGDGHVLMTGLTEVEFEGEVDIETLTWRKTAGGDA 285


>gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
 gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
          Length = 380

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 138/288 (47%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNIT-----SDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R     +       + +  L         D ++L    +  
Sbjct: 1   MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEPDPNWVRQLCDRRFGIGGDGLILALPPEHG 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RF          +++  ET+ G++V +   DG 
Sbjct: 61  E-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG+P L+   +P      +    +  I             V MGNPH +  V+ DL
Sbjct: 120 IRVDMGKPFLNSDQVPTNLPQGRSGLPQGEIDLQGSTL--QLAAVGMGNPHVVVPVQ-DL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G+ L    +F    N+    V    +L++R WERG G T ACG+ ACA++VA
Sbjct: 177 KSIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
           +  L  +    +VK+ GG L I W      VFMTG A   ++G L+ +
Sbjct: 237 ASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDGVLNPE 284


>gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205]
          Length = 341

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 132/285 (46%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M  F+K +G+GN  L++D R          +T + +  L         D ++L     + 
Sbjct: 1   MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPP-NG 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DG+E + CGNG+RC+ RF          +++  +T+ G +V +   DG+
Sbjct: 60  GGELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L    IP      +       +      F        MGNPH +  V+  +
Sbjct: 120 IRVDMGAPFLKPSEIPTTLEVGEAGLPSGELEIDGERF--AVAAAGMGNPHVVVPVD-SV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              DL  FG+ L  HP F    N+    V S   L +R WERG G T ACG+ ACA++VA
Sbjct: 177 DEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              L  + R   + + GG L I W   N  VFM G A+  ++G +
Sbjct: 237 CHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281


>gi|255320349|ref|ZP_05361533.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82]
 gi|262379368|ref|ZP_06072524.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164]
 gi|255302544|gb|EET81777.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82]
 gi|262298825|gb|EEY86738.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164]
          Length = 281

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+D+        +  I  L+       FDQ++++      + D  
Sbjct: 1   MLEFTKMHGLGNDFMVVDLITQRAYFDTLTIQRLADRHFGIGFDQLLIVEPPDLPTADFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  K   +G + V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKSGIVEPKLGPNGWVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    +LIP        + D  +   +N+  L    VV+MGNPHA+  V  D+   ++A
Sbjct: 121 YPKFAPELIPFVTE----ETDPLYALELNNNQLLKIDVVNMGNPHAVTIV-PDVLTAEVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  +  H  F E VN+   ++ + + + LR +ERG G T ACG+ ACA+ V+      
Sbjct: 176 SIGPQVESHVRFPERVNVGFMQILNEKQVRLRVFERGSGETLACGTGACAAAVSGMRRGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 236 LAPEVEVELAGGKLQIGWREGDVVWMTGPTANVYEGRLDLR 276


>gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
 gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
          Length = 277

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++       + +  AI           D ++LI     A  D F+
Sbjct: 1   MKFTKMEGLGNDYVYVNCLEEQIADPSKTAIEVSDRHFGIGSDGLILIKPSDKA--DFFM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118
            + N DGS+ + CGNG+RCV    +      +   T +T+ GI     N +      + V
Sbjct: 59  EMYNADGSQGKMCGNGIRCVGKFVYDYGLTDKTEITVDTLAGIKYLSLNIENKAVKSVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+P     LIP+    D +    F  G   +        VSMGNPH I +++ D+ + 
Sbjct: 119 NMGKPEFTPALIPVKADGDVVIDKEFIFGGNAYRI----TCVSMGNPHCITYMD-DIKNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G +     +F + VN     V   ++L +R WERG G T ACG+ ACA  VAS  
Sbjct: 174 EIEKIGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACAVAVASIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
               N +V+VK+LGG L I W  + + V+M G A   + G+ +
Sbjct: 234 NGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTGEWN 276


>gi|91791758|ref|YP_561409.1| diaminopimelate epimerase [Shewanella denitrificans OS217]
 gi|123061318|sp|Q12S90|DAPF_SHEDO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91713760|gb|ABE53686.1| diaminopimelate epimerase [Shewanella denitrificans OS217]
          Length = 275

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+ ++   ++      T  G +  +  RDGS+ V+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+ D   IP         +          +       +SMGNPH +  V+ D+    + 
Sbjct: 121 VPVTDPSNIPFKAK-----KVEKTYLLQTPVQTFLCGAISMGNPHCVIEVD-DIDTVAVD 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL +H  FS+GVN+   ++ +   + LR +ERG G T ACG+ ACA+        K
Sbjct: 175 EIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQDK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +R V V + GG L I+W      ++MTG A+  ++G++ +
Sbjct: 235 LSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275


>gi|23502782|ref|NP_698909.1| diaminopimelate epimerase [Brucella suis 1330]
 gi|62290786|ref|YP_222579.1| diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941]
 gi|82700697|ref|YP_415271.1| diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308]
 gi|148560145|ref|YP_001259754.1| diaminopimelate epimerase [Brucella ovis ATCC 25840]
 gi|163843955|ref|YP_001628359.1| diaminopimelate epimerase [Brucella suis ATCC 23445]
 gi|189025000|ref|YP_001935768.1| diaminopimelate epimerase [Brucella abortus S19]
 gi|225853370|ref|YP_002733603.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457]
 gi|237816293|ref|ZP_04595286.1| diaminopimelate epimerase [Brucella abortus str. 2308 A]
 gi|254696186|ref|ZP_05158014.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704943|ref|ZP_05166771.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|254731104|ref|ZP_05189682.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|256112264|ref|ZP_05453185.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|256263148|ref|ZP_05465680.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9]
 gi|256370334|ref|YP_003107845.1| diaminopimelate epimerase [Brucella microti CCM 4915]
 gi|260546050|ref|ZP_05821790.1| diaminopimelate epimerase [Brucella abortus NCTC 8038]
 gi|260758836|ref|ZP_05871184.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|260760560|ref|ZP_05872903.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261755643|ref|ZP_05999352.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|265993695|ref|ZP_06106252.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|29839333|sp|Q8FYF0|DAPF_BRUSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|75496183|sp|Q57AW6|DAPF_BRUAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123546212|sp|Q2YLR4|DAPF_BRUA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166224246|sp|A5VSQ7|DAPF_BRUO2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082828|sp|B0CIT6|DAPF_BRUSI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807487|sp|B2S885|DAPF_BRUA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767092|sp|C0RFH7|DAPF_BRUMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|23348803|gb|AAN30824.1| diaminopimelate epimerase [Brucella suis 1330]
 gi|62196918|gb|AAX75218.1| DapF, diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941]
 gi|82616798|emb|CAJ11888.1| Diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308]
 gi|148371402|gb|ABQ61381.1| diaminopimelate epimerase [Brucella ovis ATCC 25840]
 gi|163674678|gb|ABY38789.1| diaminopimelate epimerase [Brucella suis ATCC 23445]
 gi|189020572|gb|ACD73294.1| Diaminopimelate epimerase [Brucella abortus S19]
 gi|225641735|gb|ACO01649.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457]
 gi|237788360|gb|EEP62575.1| diaminopimelate epimerase [Brucella abortus str. 2308 A]
 gi|256000497|gb|ACU48896.1| diaminopimelate epimerase [Brucella microti CCM 4915]
 gi|260096157|gb|EEW80033.1| diaminopimelate epimerase [Brucella abortus NCTC 8038]
 gi|260669154|gb|EEX56094.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292]
 gi|260670992|gb|EEX57813.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261745396|gb|EEY33322.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686]
 gi|262764676|gb|EEZ10597.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether]
 gi|263093051|gb|EEZ17201.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409933|gb|ADZ66998.1| Diaminopimelate epimerase [Brucella melitensis M28]
 gi|326539646|gb|ADZ87861.1| diaminopimelate epimerase [Brucella melitensis M5-90]
          Length = 303

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|256059906|ref|ZP_05450092.1| diaminopimelate epimerase [Brucella neotomae 5K33]
 gi|261323878|ref|ZP_05963075.1| diaminopimelate epimerase [Brucella neotomae 5K33]
 gi|261299858|gb|EEY03355.1| diaminopimelate epimerase [Brucella neotomae 5K33]
          Length = 303

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISV MG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVGMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|161619850|ref|YP_001593737.1| diaminopimelate epimerase [Brucella canis ATCC 23365]
 gi|260567581|ref|ZP_05838051.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40]
 gi|189082827|sp|A9M8R8|DAPF_BRUC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|161336661|gb|ABX62966.1| diaminopimelate epimerase [Brucella canis ATCC 23365]
 gi|260157099|gb|EEW92179.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40]
          Length = 303

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|254700573|ref|ZP_05162401.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
 gi|261751081|ref|ZP_05994790.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
 gi|261740834|gb|EEY28760.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513]
          Length = 303

 Score =  220 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVD+G P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDIGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|83949967|ref|ZP_00958700.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM]
 gi|83837866|gb|EAP77162.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM]
          Length = 277

 Score =  220 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/275 (36%), Positives = 135/275 (49%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V D R     IT      ++        DQ+ LI    +   DA +
Sbjct: 9   LPFMKMHGLGNDFVVFDGRARDIAITPALARLVADRHRGIGCDQLALITA--EGPGDAHL 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R L   + R +    T RG L A++   G  SV+MG P 
Sbjct: 67  TFWNADGSMAAACGNATRCIARHLMDDLGRDALHLTTARGDLAARDMGQGVTSVNMGAPQ 126

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA + D ++                P    MGNPH  FFVE D     LA FG
Sbjct: 127 LDWAEIPLAEAMDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAERVALAEFG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP+F E  N+ +A +   + L +R WERGVG T A GS++CA+ VA+     T R
Sbjct: 176 PRYEHHPLFPERTNVQVASLIGPDHLRMRVWERGVGPTLASGSSSCATAVAAARRGLTGR 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V++ + GG L I+W ++  V+MTG      +G L
Sbjct: 236 CVTITLDGGTLEIDWREDG-VWMTGRTAHVCDGVL 269


>gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
 gi|259595055|sp|C4Z900|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
          Length = 285

 Score =  220 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 136/287 (47%), Gaps = 14/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++     +  +  +I           D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
           RI N DGSE + CGNG+RCV +++               G  +       +EN+   + V
Sbjct: 59  RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPIL    IP+ ++      D + +            +   VSMGNPHA+ FV+ D+
Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD-DV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  CA+V+A
Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281
                KT+  V V + GG L IE   + NHVFMTG A + + G++DI
Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284


>gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
 gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
          Length = 279

 Score =  220 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 13/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K  G GN  ++++       +    A+           D ++++   Q A  D  +
Sbjct: 1   MQFTKWHGQGNDFVIVNGFQEKIEDYAQAAVKICDRHFGIGADGLVIVGPSQVA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE + CGN  RCV    +      +   T ET+ G +  +   +     ++ V
Sbjct: 59  RIFNSDGSEAEMCGNVTRCVARYVYEYGLTDKTKITLETLAGPIKPELIFENGVLRTVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP L    IP+    D    +  ++  + +    +   VSMGNPH I FV+ D+   
Sbjct: 119 DMGEPRLKRAQIPMIGEPD---SEAINVPLIVNDKTYDITCVSMGNPHCIIFVD-DVDEI 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +LA+ G L+  HP F    N+   +V +   + +R WERG G+T ACG+ A A++VA+  
Sbjct: 175 NLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASATLVAAVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             KT R  ++ + GG L++EW ++NHV+M+G A + + G+
Sbjct: 235 NGKTGRVATIHLDGGDLVLEWGNDNHVYMSGPAVEVFRGE 274


>gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
 gi|229807510|sp|B0TGR9|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
          Length = 281

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 19/288 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +V++         ++    A+           D ++L+     A  D
Sbjct: 1   MEFVKMHGLGNDFIVVNAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPSDKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRD-----G 114
              RI+N DGSE + CGNG+RC+ R++  R    ++    ET+ GI+V +   D      
Sbjct: 59  IRWRILNSDGSEPEMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVT 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMGEP L    IP+             +G      +     +SMGNPH + +V +D
Sbjct: 119 GVCVDMGEPRLQRHQIPMVGPEGPAVNQELVVGD----AVVRVTALSMGNPHCLIYV-ND 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    + + G  +  HP F    N+   +V + + + +R WERG G T ACG+ ACA+VV
Sbjct: 174 IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            S     T+R V+V + GG L IEW  +NN V+MTG A + + G+L +
Sbjct: 234 GSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281


>gi|254470941|ref|ZP_05084344.1| diaminopimelate epimerase [Pseudovibrio sp. JE062]
 gi|211960083|gb|EEA95280.1| diaminopimelate epimerase [Pseudovibrio sp. JE062]
          Length = 291

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 118/288 (40%), Positives = 165/288 (57%), Gaps = 5/288 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V D R     +T   I  +        FDQ++ +     +   AF+RI N 
Sbjct: 1   MNGLGNDFVVFDSREKKIVLTPAQIATIGDREKGIGFDQMITVEPA-SSDAYAFMRIHNR 59

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWK 128
           DGSEV +CGN  RC+ R L       S T +T  G+L+A  +   + +SVDMG P L+W 
Sbjct: 60  DGSEVDACGNATRCIGRLLMGEAGTPSVTIQTNAGLLIAHASDSETLVSVDMGRPRLEWD 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA  F         IGP++   L +P VV++GNPHAIF+V+ D+  +DL  FG LL 
Sbjct: 120 QIPLAEEFADTRAIELQIGPIDAPVLHSPSVVNVGNPHAIFWVD-DIEAHDLERFGPLLE 178

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HPMF E  N+S+A++     + L+ WERGVGLT ACG+AACA+ VA+    +  R  +V
Sbjct: 179 CHPMFPEKANISLAQIIGENEIRLKVWERGVGLTRACGTAACATGVAAARTGRAARKCTV 238

Query: 249 KMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            + GG L IEW ++N H+ MTGE   E+EG+L++ T  + K    D A
Sbjct: 239 HLPGGPLGIEWREDNDHIMMTGETAIEFEGELNLDTLAYTKTASGDAA 286


>gi|254694561|ref|ZP_05156389.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
 gi|261214885|ref|ZP_05929166.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
 gi|260916492|gb|EEX83353.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya]
          Length = 303

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLLSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|170724854|ref|YP_001758880.1| diaminopimelate epimerase [Shewanella woodyi ATCC 51908]
 gi|229813248|sp|B1KQD0|DAPF_SHEWM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169810201|gb|ACA84785.1| Diaminopimelate epimerase [Shewanella woodyi ATCC 51908]
          Length = 279

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/279 (32%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           M+ FAKM G+GN  +V+D    +   + + I  L+       FDQ++L+    D  +D  
Sbjct: 1   MIHFAKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV+ CGNG RC  RF+ ++    +      T  G +  +  RDG+++V+MG
Sbjct: 61  YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P+LD   IP                  + +       +SMGNPH +  VE D+ H ++ 
Sbjct: 121 VPVLDPSKIPFNAK-RVEKTYLLQTSSSHAMETFLCGAISMGNPHCVLEVE-DIEHAEVE 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G LL ++  F +GVN+   +V     + LR +ERG   T ACG+ ACA+        K
Sbjct: 179 RIGALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQLQGK 238

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            N+ V V + GG L I W  + N ++MTG A+  ++G++
Sbjct: 239 LNKMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQI 277


>gi|17986417|ref|NP_539051.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|256045536|ref|ZP_05448419.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260562846|ref|ZP_05833332.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|265991962|ref|ZP_06104519.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|21362470|sp|Q8YJF0|DAPF_BRUME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|17982011|gb|AAL51315.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|260152862|gb|EEW87954.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M]
 gi|263003028|gb|EEZ15321.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 303

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    + P +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
 gi|149754558|gb|EDM64489.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
          Length = 282

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 140/284 (49%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++               +S        D +++I+  + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVNCFEEKIENPPAVARYVSDRHFGIGSDGLIMINPSEVA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      +   + ET+ GI       ++ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTQISVETLGGIKYLDLTVEDGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L   LIP+    +K+  +   +    +        VSMGNPH + +V+ D+ + 
Sbjct: 119 DMGKPELKSDLIPIISENEKVIDEPIEVDGQVYHMTG----VSMGNPHTVIYVD-DVKNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H  F + +N          ++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 DLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACAVAVASIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            + T+  V+VK+LGG L IEW    NHVFMTG AK  ++G +DI
Sbjct: 234 NNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVIDI 277


>gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
 gi|167661119|gb|EDS05249.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
          Length = 277

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + ++         S+    +S        D +++I+  + A  D  +
Sbjct: 1   MRFTKMHGLGNDYVYVNCFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPSKVA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      + S + ET+ GI       K+ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLGGIKYLDLTVKDGKVALVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L  + IP+    +++  +   +G + +        VSMGNPH + +V+ DL   
Sbjct: 119 DMGKPELKPERIPIVSDEERVVNEPIIVGGMEYRMTG----VSMGNPHVVVYVK-DLEGV 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G     H  F + VN    +V   +++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 KIEHVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACAVAVASIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+VK+LGG LLIEW  +   V+MTG A   ++G++ I
Sbjct: 234 NGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277


>gi|152979621|ref|YP_001345250.1| diaminopimelate epimerase [Actinobacillus succinogenes 130Z]
 gi|171704361|sp|A6VQR8|DAPF_ACTSZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150841344|gb|ABR75315.1| Diaminopimelate epimerase [Actinobacillus succinogenes 130Z]
          Length = 274

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +     + I  L+       FDQ++L+    D  +D   
Sbjct: 1   MHFSKMHGLGNDFVVVDAVTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG I V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  VE D+   ++A 
Sbjct: 121 PIWEPAKIPFNA-----NKFEKNYILRTDIQTVLCGAVSMGNPHCVIQVE-DIKTANVAQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V     + LR +ERG G T ACGS ACA+          
Sbjct: 175 LGPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V V + GG L+IEW    H ++MTG+A   ++G + +
Sbjct: 235 DSPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274


>gi|169632676|ref|YP_001706412.1| diaminopimelate epimerase [Acinetobacter baumannii SDF]
 gi|229807501|sp|B0VT30|DAPF_ACIBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169151468|emb|CAP00217.1| diaminopimelate epimerase [Acinetobacter baumannii]
          Length = 281

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP      +           N        VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F E +N    +V   + + LR +ER VG T ACG+ ACA+ V+      
Sbjct: 177 GIGPQVESHKRFPERINAGFMQVIDDKHVRLRVFERCVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277


>gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB]
 gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB]
          Length = 292

 Score =  220 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/284 (35%), Positives = 151/284 (53%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G+GN  + I+         ++    +S        D ++LI D + A  D  +
Sbjct: 16  VKFTKMHGLGNDYIYINAVLEDIKNPNEFSKFVSDRHFGIGSDGLVLILDSKIA--DFKM 73

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE + CGN +RCV +F+       +K  T ET+ G+ V +   +G     + V
Sbjct: 74  RMFNSDGSEAEMCGNAIRCVGKFVYDNKLTDKKIITIETLAGVKVLEMTVEGEEVVLVKV 133

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEP L+   IP+      +  +       N  F      VSMGNPHA+ ++E D+ ++
Sbjct: 134 DMGEPTLEALKIPVISDKYPVINETIDSNGYNFKF----TCVSMGNPHAVTYIE-DVDNF 188

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L   G L   H  F +  N+    V + E+L +R WERG G T ACG+ ACA +V+S  
Sbjct: 189 ELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAGETLACGTGACAVLVSSVL 248

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              + R  +VK+LGG L++EW + NNHV+MTG A K +EGK+ +
Sbjct: 249 NGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKIKL 292


>gi|301155563|emb|CBW15031.1| diaminopimelate epimerase [Haemophilus parainfluenzae T3T1]
          Length = 274

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+ D+   ++A 
Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTDVQTVLCGAVSMGNPHCVVQVD-DIETANVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+          
Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG LLIEW    + ++MTG+A   ++G + +
Sbjct: 235 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 274


>gi|254713653|ref|ZP_05175464.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
 gi|254715993|ref|ZP_05177804.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261217761|ref|ZP_05932042.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261321391|ref|ZP_05960588.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
 gi|260922850|gb|EEX89418.1| diaminopimelate epimerase [Brucella ceti M13/05/1]
 gi|261294081|gb|EEX97577.1| diaminopimelate epimerase [Brucella ceti M644/93/1]
          Length = 303

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGKPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
 gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
          Length = 311

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D        +T   + AL+        DQ++++        D  
Sbjct: 25  LSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALANRHFGIGADQLLVVEKPTVDGADFK 84

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI NCDG EV+ CGNG RC V+F++ R    ++S   + ++G++      +G + VDMG
Sbjct: 85  YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 144

Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P+ +   +    S    + +              R    VSMGNPHA+  V+ D   Y 
Sbjct: 145 APVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DAEAYP 203

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G L+ +H  F + VN    ++ S   + LR +ER  G T ACG+ ACA+V A    
Sbjct: 204 VLDEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAVAAGIRR 263

Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
              +  V+V   GG L I W     +   + M G A+  +EG++D+  
Sbjct: 264 GLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDLNA 311


>gi|71892348|ref|YP_278082.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|123640808|sp|Q491Z7|DAPF_BLOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71796454|gb|AAZ41205.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 274

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 148/280 (52%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  ++ID    + ++TS+ I  LS       FDQ++++    D ++D   
Sbjct: 1   MRFTKMNGLGNDFVIIDAVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHC 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+EV  CGNGMRCV +F+  +    +++    T    ++     D  +SV+MG 
Sbjct: 61  RIYNSDGTEVNQCGNGMRCVAQFVCLKKLTNKRNIHISTRANHIILSIMNDNRVSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D KLIP   S  +     F         +    VVSMGNPH I  VE  + +  + S
Sbjct: 121 PIFDPKLIPFYISQYQKTYILFLP-----TQIILCGVVSMGNPHCIILVEK-IENIQVTS 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ L  H  F E VN+S  ++ +  ++ LR +ERGVG T ACG+AACA+V         
Sbjct: 175 LGSALEDHHCFPERVNVSFMQIINCNNIRLRVYERGVGETQACGTAACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
             +V+V + GG + + W   +N ++MTG     ++G +++
Sbjct: 235 YESVNVNLPGGTISVNWKGASNALYMTGSTSYVYDGYINL 274


>gi|306842919|ref|ZP_07475555.1| diaminopimelate epimerase [Brucella sp. BO2]
 gi|306286942|gb|EFM58462.1| diaminopimelate epimerase [Brucella sp. BO2]
          Length = 303

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P   W
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFGW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAIFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ]
 gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ]
          Length = 278

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D      +  ++ AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMHGAGNDYVYVDCFKETVDNPAETAIKVSNRNFGIGSDGLILIMPTDKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +         EN+   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKTEITAETGAGILTLQLFPNAENKVERVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L  + IP+                           VSMGNPH I +V+ D+ +
Sbjct: 119 VNMGPPRLSREEIPMNG---TPAAQVVAEELTVLDKTFKITCVSMGNPHCIIYVD-DVDN 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +A++G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 175 FPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGASAVCVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             + T+R +   + GG L +EW +N  VFMTG A + + G++ +
Sbjct: 235 LNNLTDRKILNHLAGGDLELEWVENGPVFMTGPATEVFSGEIAL 278


>gi|163743348|ref|ZP_02150728.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10]
 gi|161383342|gb|EDQ07731.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10]
          Length = 281

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/275 (34%), Positives = 138/275 (50%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA +
Sbjct: 12  LPFMKMHGLGNDFVVVDARDQTWDITPAMAAGIAHRQMGIGFDQLTVI---TKGDEDAHL 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R L     +      T RG+L+A++  +G  SV+MG+P 
Sbjct: 69  TFYNADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGQPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   D ++                P    MGNPH  FFV  +     LA FG
Sbjct: 129 LDWQDIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFVG-NAEVIPLAEFG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A V + + L +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 178 ARYEHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG L I+W ++  V+MTG      +G  
Sbjct: 238 KVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGYF 271


>gi|306843382|ref|ZP_07475983.1| diaminopimelate epimerase [Brucella sp. BO1]
 gi|306276073|gb|EFM57773.1| diaminopimelate epimerase [Brucella sp. BO1]
          Length = 300

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 195/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAICLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1]
          Length = 285

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 14/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++     +  +  +I           D ++ I        D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS--GKADFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
           RI N DGSE + CGNG+RCV +++               G  +       +EN+   + V
Sbjct: 59  RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPIL    IP+ ++      D + +            +   VSMGNPHA+ FV+ D+
Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD-DV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  CA+V+A
Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281
                KT+  V V + GG L IE   + NHVFMTG A + + G++DI
Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284


>gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
          Length = 277

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K+ G+GN  +V++        ++   A            D ++L+H     + D  
Sbjct: 1   MHFVKVHGLGNDFVVVNAMTETLPADLPELARRVCHRYFGIGADGLVLLHKSD--AADLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117
           ++IIN DGSE + CGN +RCV ++   +   K      ET+ GI + +   +      I 
Sbjct: 59  MQIINSDGSEPEMCGNAIRCVAKYAYEQNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP+  S  ++  +  ++G            VSMGNPH + FV++ +  
Sbjct: 119 VDMGEPILERAEIPMRGSAGRVLAEDLNVGN----ETFKVTAVSMGNPHCLIFVDEAVS- 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + ++  G  +  H +F    N+    V +   + ++ WERG G T ACG+ ACA+VVA+ 
Sbjct: 174 FPVSLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATVVAAV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T R V+V + GG LLIEW DNNHV+MTG A++ + G   +
Sbjct: 234 LNGLTERQVTVHLTGGDLLIEWADNNHVYMTGPAEEVFAGSYKL 277


>gi|254707543|ref|ZP_05169371.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
 gi|261315024|ref|ZP_05954221.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
 gi|261304050|gb|EEY07547.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10]
          Length = 303

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 145/285 (50%), Positives = 193/285 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DL TWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLHTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|87199423|ref|YP_496680.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135104|gb|ABD25846.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 275

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 105/276 (38%), Positives = 145/276 (52%), Gaps = 16/276 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R    ++T+    AL+        DQ++++     A  D  +
Sbjct: 9   IPFRKMHGLGNDFVVIDAREAAVSMTAARAAALADRRTGIGCDQLIVLEPSDVA--DVRM 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DGSEV++CGN  R V   L          F    G L+  E R   +SVDMG P 
Sbjct: 67  RIFNNDGSEVEACGNASRAVGLLLGG------TQFIETLGGLIRSEARPDGVSVDMGAPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IP++ + D ++       PV    L NP  V++GNPH IFFV+ D    DLA  G
Sbjct: 121 LRWDEIPVSYAMDTLE------MPVGWEDLENPVGVNVGNPHVIFFVD-DADAVDLARLG 173

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+   P+F E +N+++A V   + L LR WERG GLT ACG+ ACA+ VA+     T R
Sbjct: 174 PLIENDPLFPERINVNVASVVGPDHLKLRVWERGAGLTRACGTGACATAVAAIRRKLTGR 233

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            V + + GG L I W +   + MTG A   +EG  +
Sbjct: 234 KVRIDLPGGPLTITWPEGGTIDMTGPATLSFEGAFE 269


>gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123502491|sp|Q2JLR0|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 285

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 138/286 (48%), Gaps = 15/286 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +  + F K +G+GN  +++D R      ++ +   AL         D ++ +   Q+   
Sbjct: 2   TPRLSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQE-GA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSIS 117
           D  +R+ N DGSE + CGNG+RC+ RFL           +   T+ G +V +   DG ++
Sbjct: 61  DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVT 120

Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           VDMG P L  K IP  L    +K+ R    +             VSMGNPH + F+E++ 
Sbjct: 121 VDMGIPRLLAKQIPTTLVEPDEKVIRQPLAVAGRE----WRVTAVSMGNPHCVVFLEEEG 176

Query: 176 YHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              +L  A+ G L   HP F E  N    +V S   L LR WERG G T ACG+ ACA +
Sbjct: 177 SLEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVL 236

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           VA+    +     +V++ GG L I W     HV+MTG A   + G 
Sbjct: 237 VAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282


>gi|254708920|ref|ZP_05170731.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|256030446|ref|ZP_05444060.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
 gi|256158430|ref|ZP_05456328.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|256253850|ref|ZP_05459386.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261220988|ref|ZP_05935269.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261316419|ref|ZP_05955616.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|265987490|ref|ZP_06100047.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
 gi|265996947|ref|ZP_06109504.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|260919572|gb|EEX86225.1| diaminopimelate epimerase [Brucella ceti B1/94]
 gi|261295642|gb|EEX99138.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94]
 gi|262551415|gb|EEZ07405.1| diaminopimelate epimerase [Brucella ceti M490/95/1]
 gi|264659687|gb|EEZ29948.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1]
          Length = 303

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 279

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++         +  A            D ++LI   +    D  +
Sbjct: 3   MKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADFEM 60

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILV----AKENRDGSISV 118
           ++ N DGS  + CGNG+RCV    +      +   + ET+ GI       +E +   + V
Sbjct: 61  KMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PI   + IP+    D        +    +        VSMGNPHA+ +++ D+ + 
Sbjct: 121 DMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM----TCVSMGNPHAVVYLD-DIQNM 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G     HP F   VN   ARV   E++++R WERG G T ACG+ ACA  VAS  
Sbjct: 176 EIEKIGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGACAVAVASMV 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              T   V+V++LGG L IEW  + N V+MTG A   ++G+L
Sbjct: 236 NGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277


>gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912]
 gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912]
          Length = 277

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 13/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +V++      +  + A N          D ++ +     A  D  +R
Sbjct: 1   MKFVKMHGLGNDFIVVEGHALPLDPGALARNWCDRHFGIGADGLVFVLPSDRA--DVQMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISVD 119
           I N DGSE + CGN +RCV ++   R   +R+    ET+ G+       +G     ++VD
Sbjct: 59  IFNADGSEAEQCGNAVRCVGKYAFERGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEPIL+   IP+A +       R         F      VSMGNPHA+ FV+ D+   D
Sbjct: 119 MGEPILEPGRIPVALAEGGTPSGRVEAAGREWAF----TAVSMGNPHAVIFVD-DVEGTD 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ +  + +F   VN+          + +R WERG G T ACG+ ACA+VVA    
Sbjct: 174 VRGVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAVVAGALE 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            ++ R V V + GG L IEW ++  V+MTG A + + G++
Sbjct: 234 GRSGRKVRVHLPGGTLKIEWAEDGRVYMTGPAVEVFRGEI 273


>gi|253997559|ref|YP_003049623.1| diaminopimelate epimerase [Methylotenera mobilis JLW8]
 gi|253984238|gb|ACT49096.1| diaminopimelate epimerase [Methylotenera mobilis JLW8]
          Length = 279

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 12/285 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++M+ F KM+G GN  +VID      ++++D I  L+       FDQ++L+     A  D
Sbjct: 2   ANMIKFTKMQGAGNDFMVIDGVTQSISLSADTIKKLANRQFGIGFDQLLLVESS--AVAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DGSEV  CGNG RC VRF+  +   +++  + ET  GI+  K    G ++V+
Sbjct: 60  FKYRIFNADGSEVSQCGNGARCFVRFVVDQGLTQQREISVETASGIITPKLEDHGLVTVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      IP   +         H     +    N   VSMGNPHA+  V+ D+    
Sbjct: 120 MGAPRFKPDAIPFVAA-----SAATHYALEVNDQAFNIAAVSMGNPHAVLTVD-DVETAP 173

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ +  HP F E VN+   +V     + LR +ERG G T ACG+ ACA+ V     
Sbjct: 174 VLPLGSAIEHHPRFPERVNVGFMQVMDEHHIKLRVFERGSGETLACGTGACAAAVTGIQS 233

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            + +  V V   GG L I W   +  V MTG A   + G++D+  
Sbjct: 234 GRLSSPVKVSARGGELSIAWQGADTPVMMTGPAVTVFTGEIDLDA 278


>gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037593|gb|EEG47839.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
           10507]
          Length = 278

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      +  S+    +S        D ++LI   Q A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPSQIA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGS+   CGNG+RCV +++         T        +       +  +   + V
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYVYDYGIVPKTTLRIATKSGIKELNLTVENGKVSLVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL+   IP+     +       +    + F      VSMGNPHA+ +++ D+ + 
Sbjct: 119 NMGSPILEASKIPVVSDQSQAVNQPIKVNGHTYYFTG----VSMGNPHAVVYLD-DVDNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G    KHP+F + VN    +V   ++L +R WERG G T ACG+ ACA  V+S  
Sbjct: 174 DIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGACAVAVSSIL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + T   V+VK+LGG L I W    N V+MTG A   ++G++ + 
Sbjct: 234 NNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITLP 278


>gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
 gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
          Length = 298

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 132/289 (45%), Gaps = 14/289 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +Q   +DF K  G+GN  +++D R          DAI     +     D ++        
Sbjct: 7   LQQRTLDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ- 65

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RF+         +S+   T+ G ++ +   DG 
Sbjct: 66  GCDYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQ 125

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           ++VDMG P L    +P     +  D        V          VSMGNPH + F E D 
Sbjct: 126 VAVDMGPPTLKGAEVPTKLPVN-ADGAVVKQPLVVDGKTWLVTCVSMGNPHCVTFGEQDA 184

Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
                +    L   G L   H +F    N    +V S   L +R WERG G T ACG+ A
Sbjct: 185 KGDLEVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGA 244

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           CA VVA+    +  R   V + GG L IEW + NNHV+MTG AK  + G
Sbjct: 245 CAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293


>gi|254512917|ref|ZP_05124983.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11]
 gi|221532916|gb|EEE35911.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11]
          Length = 280

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 16/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +++D R     IT      +        FDQ+ +I        DA +
Sbjct: 12  LPFMKMHGLGNDFVIVDARAHTVPITPAMARGIGHRRFGVGFDQLAVIE---QGQADAHL 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL +   + +    T RG L+A++  DG  S++MG+P 
Sbjct: 69  VFYNADGSTSAACGNATRCIARFLMNESGKSNLALTTERGTLLARDAGDGLTSINMGQPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   + ++                P    MGNPH  FFV  D     L  FG
Sbjct: 129 LDWQEIPLAEDVNTLEL----------PIEGGPTATGMGNPHCTFFV-VDAEAIPLEEFG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A+VT  + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 178 ARYEYHPLYPERTNVQVAQVTGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            V + + GG + I+W D+  V+MTG       G L  +
Sbjct: 238 EVQIDLDGGTIWIDWRDDG-VWMTGPTCHVLSGTLTPE 274


>gi|254418556|ref|ZP_05032280.1| diaminopimelate epimerase [Brevundimonas sp. BAL3]
 gi|196184733|gb|EDX79709.1| diaminopimelate epimerase [Brevundimonas sp. BAL3]
          Length = 279

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 109/275 (39%), Positives = 146/275 (53%), Gaps = 6/275 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G GN  +VID        T D I AL+       FDQ++ I   + A  DAF+R
Sbjct: 7   PFIKMNGAGNDFIVIDALETPFRPTEDQIRALADRASGEGFDQLIAIEPSETA--DAFMR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DGS V++CGN +RCV   L         T +T  G   A    D  ++VDMG P L
Sbjct: 65  VWNADGSMVETCGNALRCVGWLLMEAGGGDRVTIDTAAGPTTATRAGDRRVTVDMGRPRL 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  +PLA   D    +   +GP++   L  P  VSMGNPH +FF +       +   G+
Sbjct: 125 DWTQVPLAEEMDTRGIE-LQVGPIDAPLLHTPGAVSMGNPHVVFFTDRQ-DDGFVTGSGS 182

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F EGVN+  A V   + + LR WERG GLT ACG+ ACA+ VA+     T+R 
Sbjct: 183 LVEHHPLFPEGVNVGFAHVLDRDHIRLRVWERGAGLTKACGTGACAAQVAAARRGLTDRK 242

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V + GG L+I+W    +HV MTG  + E  G L
Sbjct: 243 ATVVVDGGELVIDWDPATDHVLMTGPVEIERTGAL 277


>gi|56695194|ref|YP_165542.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3]
 gi|56676931|gb|AAV93597.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3]
          Length = 269

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 16/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     IT      ++       FDQ+ +I        DA +
Sbjct: 1   MTFMKMHGLGNDFVVVDARLHPVRITGALARGIAHRHLGVGFDQLAVIEP---GKGDAHL 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R L     +      T RG L A++  DG  SV+MG P 
Sbjct: 58  VFYNADGSTSAACGNATRCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQ 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA   D ++                P    MGNPH  FFV  D     LA FG
Sbjct: 118 LLWHEIPLAEEMDTLEL----------PIEGGPTATGMGNPHCTFFV-ADAEAIPLAEFG 166

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  NL +A++T  + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 167 ARYEHHPLYPQRTNLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 226

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            V + + GG + I+W ++  V+MTG     +   L  +
Sbjct: 227 KVQIDLDGGTIWIDWREDG-VWMTGPTMHVFSATLTPE 263


>gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59797812|sp|Q72W63|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 281

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  + ID       +T + I  +S        D ++ I + +    D  +
Sbjct: 4   LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
            + N DGS  + CGNG+RCV +++        K+   ET  GIL         N+   +S
Sbjct: 62  DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P+L    IP+    ++   D+       +L       VSMGNPH + FV+ D   
Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNL---KFTAVSMGNPHCVIFVD-DSDE 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+ +H +F + VN+    +   + L  RTWERG G T ACG+ ACA +VA  
Sbjct: 178 FPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGN 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I
Sbjct: 238 LTGRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281


>gi|303242859|ref|ZP_07329323.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
 gi|302589605|gb|EFL59389.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
          Length = 277

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++      +  S+    +S        D ++LI   Q    D  +
Sbjct: 1   MKFTKMQGLGNDYIYVNCFTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPSQM--CDFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRG----ILVAKENRDGSISV 118
           R+ N DGSE + CGN +RCV +F+      +      ET+ G     +  K+N+   + V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDNGMTQKSVIKVETLAGIKVLDMTVKDNKVELVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL+   IP+  + +        I             VSMGNPHA+ +V+ D+  +
Sbjct: 119 DMGEPILEPAKIPVDSNKELFVSQPVVIDGREFK----VTCVSMGNPHAVTYVD-DVEKF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  +  + ++ + +N    +V   ++L +R WERG G T ACG+ ACA +V+S  
Sbjct: 174 PLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGTGACAVLVSSVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              +NR V VK+LGG L+IEW++ +NHV+MTG A K ++G +D+
Sbjct: 234 NDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDIDV 277


>gi|254488147|ref|ZP_05101352.1| diaminopimelate epimerase [Roseobacter sp. GAI101]
 gi|214045016|gb|EEB85654.1| diaminopimelate epimerase [Roseobacter sp. GAI101]
          Length = 298

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 148/301 (49%), Gaps = 30/301 (9%)

Query: 1   MQSSM---VDFAKMEGIGNKILVIDMRGC--------HDNITSDAINAL-STDDNTHFDQ 48
           M S M   + F KM G+GN  +V+D R             +T     A+        FDQ
Sbjct: 14  MYSDMTNGLPFMKMHGLGNDFVVLDARDSALLGKDGDSLQVTPALAQAVGHRHFGVGFDQ 73

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA 108
           + +I      + DA +   N DGS   +CGN  RC+ RFL     + S    T RG L A
Sbjct: 74  LAVI---TTGTGDAHLTFYNSDGSLSAACGNATRCIARFLMDETGKSSLHLTTDRGDLAA 130

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           ++  D   +V+MG+P LDW+ IPLA + + ++                P    MGNPH  
Sbjct: 131 QDMGDRLTAVNMGQPQLDWQDIPLAHAMETLEL----------PIDGAPTATGMGNPHCT 180

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           FFV  DL   DL  FG  +  HP++ E  N+ IA++   + + +R WERGVG+T A GS+
Sbjct: 181 FFV-ADLAAIDLERFGPGIEHHPLYPERTNVQIAQIIGPDHIRMRVWERGVGITLASGSS 239

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
           +CA+ VA+     T R V + + GG L I+W ++  V+MTG     + G L   T +++ 
Sbjct: 240 SCATAVAAARRGLTGRKVRIDLDGGTLHIDWREDG-VWMTGPTAHVFSGTL---TREFLD 295

Query: 289 K 289
            
Sbjct: 296 G 296


>gi|110635719|ref|YP_675927.1| diaminopimelate epimerase [Mesorhizobium sp. BNC1]
 gi|122965555|sp|Q11CW3|DAPF_MESSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110286703|gb|ABG64762.1| diaminopimelate epimerase [Chelativorans sp. BNC1]
          Length = 293

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 149/288 (51%), Positives = 190/288 (65%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            FAKM G+GN I+V DMRG  D +  +A   L++D  THFDQIM IHD +    + +I I
Sbjct: 6   QFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           IN DGS  Q+CGNGMRCVV+ L +   R SFTFETI G+L A+E+ +G ISVDMG+P   
Sbjct: 66  INSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFG 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F    +    +GP++   L +P V SMGNPHAIF+VEDD Y YDL  FG +
Sbjct: 126 WQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLERFGPM 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N++IARV S E L +RTWERG GLT ACGSAACA+ V++    +T R V
Sbjct: 186 LENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRTGRGV 245

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            V + GG L I W D++HV MTG A+ E+ G+ D  TG W ++ E   
Sbjct: 246 KVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA 293


>gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
 gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
          Length = 290

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 132/281 (46%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  ++++         ++    L         D + L+   + A+    +
Sbjct: 1   MRFTKMHGLGNDFVIVEDFDLGLTNYAELAMGLCNRNFGIGADGLALLQPSEQAA--FRV 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
           RI N DGSE + CGN +RC  ++L  +               +        +    S+ V
Sbjct: 59  RIFNPDGSEAELCGNLLRCAGKYLYEKGHTGETVIPVEMYDKIKVLRLAVTDGVVQSVEV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPIL+  L+P+A    +   +         +       VSMGNPH + FV+ +    
Sbjct: 119 DMGEPILESDLVPVAGKRRQAVNEEVTASGEKFVM----TAVSMGNPHCVIFVD-ETAAV 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L ++G  L  HP F +  N+    V S +    R WERG G T ACGS ACA +VA   
Sbjct: 174 PLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGATLACGSGACAVLVAGVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             K NR  ++ + GG L IEW D+NHV+MTG A + + G+L
Sbjct: 234 SDKLNRKATLHLPGGSLEIEWRDDNHVYMTGPAAEVFRGEL 274


>gi|254476623|ref|ZP_05090009.1| diaminopimelate epimerase [Ruegeria sp. R11]
 gi|214030866|gb|EEB71701.1| diaminopimelate epimerase [Ruegeria sp. R11]
          Length = 281

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA +
Sbjct: 12  LPFMKMHGLGNDFVVVDARDQSWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHL 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R+L            T RG+L+A++  +G  SV+MG+P 
Sbjct: 69  TFYNADGSTSGACGNATRCIARYLLDESGTSKLRLTTDRGLLLAEDVGNGLTSVNMGQPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW+ IPLA   D ++                P    MGNPH  FFVE +     LA FG
Sbjct: 129 LDWQDIPLAEDVDTLEL----------PIEGTPTATGMGNPHCTFFVE-NAEVIPLAEFG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A V   + L +R WERGVG+T A GS++CA+ VA+     T  
Sbjct: 178 ARYEHHPLYPERTNVQVAHVVGPDHLRMRVWERGVGITLASGSSSCATAVAAVRRGLTGH 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            V + + GG L ++W D+  V+MTG      +G     T ++++ 
Sbjct: 238 KVRIDLDGGTLWVDWRDDG-VWMTGPTMHVADGHF---TREFLES 278


>gi|89067276|ref|ZP_01154789.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516]
 gi|89046845|gb|EAR52899.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516]
          Length = 284

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 100/275 (36%), Positives = 141/275 (51%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R  H    +D I A++       +DQ+ +I     A  DA +
Sbjct: 23  LPFMKMHGLGNDFVVLDRRDGHAMPGADVIRAMADRRRGVGYDQLAVIEGA--ADADARL 80

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS+  +CGN  RC+   L     R      T RG L A+ +  G ++V+MG P 
Sbjct: 81  TFWNSDGSQSAACGNATRCIAAHLMDETGRDDLALVTARGRLAAERHG-GVVAVNMGAPS 139

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            DW+ +PLAR  D +                +P    MGNPH  FFVE D    DLASFG
Sbjct: 140 TDWQGVPLAREVDTLHL----------PIPGDPVATGMGNPHCTFFVE-DAESVDLASFG 188

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP+F E  N+ +A+V     + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 189 AEHEHHPLFPERTNVQLAQVLDRARIRMRVWERGVGITEASGSSSCATAVAAARRGLTER 248

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V+V + GG L I+W D+  V+M G     ++G  
Sbjct: 249 RVTVLLDGGELEIDWRDDG-VWMAGPTAHVFDGVW 282


>gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 277

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++    H    S+    +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGS+   CGNGMRCV +++                  +       +  +   + V
Sbjct: 59  EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MGEP+L+ K IP+    +K+    F++G   +        VSMGNPHA+ +V+ ++ + 
Sbjct: 119 NMGEPVLETKAIPMIYEGEKVISQPFNVGQDIYEI----TAVSMGNPHAVVYVD-NVKNL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G    KH  F E VN    RV    ++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+V++LGG L I W    N V+MTG A+  +EG+++I
Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277


>gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629]
          Length = 285

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 135/287 (47%), Gaps = 14/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +++      +    +I           D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNLFEEKLGDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
           RI N DGSE + CGNG+RCV +++               G  +       +EN+   + V
Sbjct: 59  RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175
           DMGEPIL    IP+ ++      D + +            +   VSMGNPHA+ FV+ D+
Sbjct: 119 DMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD-DV 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
             ++L  +G L   H MF +  N     + S     +R WERG   T ACG+  CA+V+A
Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                KT+  V V + GG L IE+    NHVFMTG A + + G++DI
Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEIDI 284


>gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
 gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
          Length = 278

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 16/285 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  +VI        N+   A N  +       D ++ I   + A  D  
Sbjct: 1   MMKFTKMHGLGNDFIVIAGEQQLPGNVAELAKNQCNRFFGIGADGLVYILPSEVA--DFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116
           +RIIN DGSE + CGN +RC  +++       ++  T ET+        L   + +   +
Sbjct: 59  MRIINSDGSEAEQCGNAIRCAAKYIYDNGLTDKEELTIETLGAGAQTVQLEVADGKVQQV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG PIL+   +P     D++      +      F      VSMGNPH + +V+ D  
Sbjct: 119 RVDMGAPILNGLQVPTTVDEDRVIEHPIEVDGREFRF----TAVSMGNPHCVIYVD-DAA 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           ++DLA++G  L  HPMF   +N+    V S E  ++R WERG G T ACG+ ACA+VV+S
Sbjct: 174 NFDLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACATVVSS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
                T+R   V + GG L IEW++ +NHV+MTG A + + G+  
Sbjct: 234 VLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGEWK 278


>gi|255262180|ref|ZP_05341522.1| diaminopimelate epimerase [Thalassiobium sp. R2A62]
 gi|255104515|gb|EET47189.1| diaminopimelate epimerase [Thalassiobium sp. R2A62]
          Length = 271

 Score =  218 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 15/277 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D RG    + S    A+        FDQ+ ++        D  +
Sbjct: 9   LPFMKMHGLGNDFVVVDERGITPRVDSTIAKAIGDRHRGVGFDQLAVL--SNTDDADVQL 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+   L  +   ++ T +T RG+L A  +  G  SV+M  P+
Sbjct: 67  TFYNADGSTAGACGNATRCIANHLLEQTSTRAMTLQTERGLLSAMSDVAGVTSVNMLHPL 126

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLA + D +                 P    MGNPH  FFV+ D+    L +FG
Sbjct: 127 LDWAYVPLAENVDTLAL----------PIDGGPTATGMGNPHCTFFVD-DVEAVALETFG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  HP+F E  N+ +A++   + + +R WERGVG+T + GS++CA+ VA+     T  
Sbjct: 176 ARMEHHPLFPERTNVQVAQIIGPDHIRMRVWERGVGITLSSGSSSCATAVAAARRGLTGC 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +V + + GG L I+W D+  V+MTG     ++G   +
Sbjct: 236 SVQIDLDGGTLHIDWRDDG-VWMTGPTAHVFDGVWHL 271


>gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
 gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
          Length = 277

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++    H    S+    +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGS+   CGNGMRCV +++                  +       +  +   + V
Sbjct: 59  EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MGEP+L+ K IP+    +K+    F++G   +        VSMGNPHA+ +V+ ++   
Sbjct: 119 NMGEPVLETKAIPMIYDGEKVISQPFNVGQDIYEI----TAVSMGNPHAVVYVD-NVKSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G    KH  F E VN    RV    ++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+V++LGG L I W    N V+MTG A+  +EG+++I
Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277


>gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
          Length = 285

 Score =  218 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 12  MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 71

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T +G +V     DG I V+MGE
Sbjct: 72  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 131

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+ ++   ++A 
Sbjct: 132 PIWEPNKIPFTA-----NKFEKNYILRTDVQTVLCGAVSMGNPHCVVQVD-NIETANVAE 185

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    +V +   + LR +ERG G T ACGS ACA+          
Sbjct: 186 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 245

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V + GG LLIEW    + ++MTG+A   ++G + +
Sbjct: 246 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285


>gi|53804981|ref|YP_113353.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath]
 gi|53758742|gb|AAU93033.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath]
          Length = 275

 Score =  218 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 93/279 (33%), Positives = 129/279 (46%), Gaps = 10/279 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F KM+G+GN  +VID      N+   A+  L+        DQI+L+       VD  
Sbjct: 1   MLRFTKMQGLGNDFVVIDAIHQTVNLDEAALRRLADRHYGIGCDQILLVEPPASDEVDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DG EV  CGNG RC  RF+  +  + R     ET  G +V      G + V+MG
Sbjct: 61  YRIFNADGGEVSQCGNGARCFARFVREKGLIDRDEIRVETAAGRMVLWLEAGGEVRVEMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +PL       DR+R                VS+GNPHA+  V  D+    +A
Sbjct: 121 VPRHAPAEVPLLA-----DRERSVYTVNVEGVDWQFGAVSVGNPHAVITV-ADVDEAPVA 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L +H +F E  N+   +V  L    LR +ERG G T ACGS ACA+ V       
Sbjct: 175 RVGTVLERHELFPERANIGFMQVLDLHHARLRVYERGTGETLACGSGACAAAVVGILQGT 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
               V + + GG L I W      V+++G A   +EG++
Sbjct: 235 LESPVRIDLPGGTLRIGWQGRGTPVYLSGPAVTVFEGRM 273


>gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
 gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
          Length = 289

 Score =  218 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 142/284 (50%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++          +    +S        D +++I+    A  D  +
Sbjct: 13  MKFTKMQGLGNDYVYVNCFKETIENPPEMAKKVSNRNFGIGSDGLIMINPSDVA--DFEM 70

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +     +++  + ET+ GI       ++ +   + V
Sbjct: 71  EMYNADGSRSEMCGNGIRCVGKYVYDYGLTEKEHISVETLAGIKYLDLTVEDGKVKLVKV 130

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L  + IP+    +++  +  ++    +        VSMGNPHA+ +VE D+   
Sbjct: 131 DMGSPELVPENIPIVADGNRVIDEPINVNGTEYRMTG----VSMGNPHAVVYVE-DVKGL 185

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+ + G     H  F   VN    +V    ++++R WERG G T ACG+ ACA  VA   
Sbjct: 186 DIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVAVACIL 245

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+VK+LGG L IEW  + + ++MTG A+  ++G++++
Sbjct: 246 NGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289


>gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
 gi|212674051|gb|EEB34534.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
          Length = 306

 Score =  218 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 91/300 (30%), Positives = 126/300 (42%), Gaps = 18/300 (6%)

Query: 2   QSSM--VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHD 54
           +++M  + F KMEG GN  + +D       +    I  L+            D ++LI  
Sbjct: 5   RTTMRKIAFTKMEGCGNDYVYLDGVSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILP 64

Query: 55  FQDAS-VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE- 110
                  D  +R+ N DGSE + CGN  RCV RF              ET+ GI + +  
Sbjct: 65  PTSPDSADLRMRMFNADGSEAEMCGNASRCVGRFAWEHALTDRPVIRLETLAGIKLLQRV 124

Query: 111 ----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP-VNHLFLRNPFVVSMGNP 165
                    + VDMG P L  + IP+               P            VSMGNP
Sbjct: 125 DDAGGCPSRVCVDMGTPELARQRIPVCPDTASDPESPCIGQPIRVLDREWTMTCVSMGNP 184

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV+ D+   DL   G     HP F    N    ++     + +R WERG G T AC
Sbjct: 185 HAVVFVD-DVDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLAC 243

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
           G+ ACA  VA      T R V+V++ GG L I W +   H+ MTG A+  + G+     G
Sbjct: 244 GTGACAVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSGEYSPAQG 303


>gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
 gi|22256735|sp|Q8R9S4|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
          Length = 274

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+      + +  A+           D ++++     A  D  +R
Sbjct: 1   MRFTKMHGLGNDFIVIEAVEG-VDYSELAVKLCDRHFGIGADGLLVVEPSHIA--DIKMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  +    ++  T ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYEKGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        V +G PH I FV        
Sbjct: 118 MGSPIFESSKIPVKSEKQKFIDEPVKIDGKTYRLSS----VRVGVPHTILFVS-SFEESF 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F EG N+   +V   E++ +RTWERGVGLT ACGS A AS V S  L
Sbjct: 173 MKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASAVVSSLL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +T R+V+V    G LL+EW ++N ++++GE ++ + G+++I
Sbjct: 233 GRTRRSVNVHFKAGVLLVEWKEDNSIYLSGEVEEVFRGEIEI 274


>gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
 gi|99038929|gb|ABF65541.1| diaminopimelate epimerase [Ruegeria sp. TM1040]
          Length = 275

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/277 (35%), Positives = 132/277 (47%), Gaps = 14/277 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVDA 62
           M+ F KM G+GN  +VID R     IT      ++       FDQ+ +I         DA
Sbjct: 1   MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIATADASTEADA 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+ R+L  +  + S    T RG+L+A +  +G  SV+MG 
Sbjct: 61  HLVFYNADGSTSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMGA 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IP              +  +       P    MGNPH  FFVE D     LA 
Sbjct: 121 PQLSWDEIP----------LAEELETLELPIEGAPSATGMGNPHCTFFVE-DAEVIPLAE 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG     HP++ E  N+ IA V     L +R WERGVG+T A GS++CA+ VA+     T
Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITLASGSSSCATAVAAARKGLT 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R V + + GG L I+W D+  V+MTG       G  
Sbjct: 230 GRKVQIDLDGGTLWIDWRDDG-VWMTGPTMHVANGSF 265


>gi|294668983|ref|ZP_06734069.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308975|gb|EFE50218.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 282

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 133/279 (47%), Gaps = 7/279 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      +  S  I A +       FDQ++L+        D   
Sbjct: 4   LKFTKMHGLGNDFIVIDGISSPFDPASAPIAAWADRHTGIGFDQLLLVERPTSEQADFRY 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  +    ++    ET RGI+V K    G ++V+MG+
Sbjct: 64  RIFNADGGEVEQCGNGARCFARFVADKGLSGKQEIRVETARGIIVPKLAEHGLVTVNMGQ 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     +    +                 V+MGNPHA+  VE +     +A 
Sbjct: 124 PRFRPSEIPF-LPLENTSGETLQYDVRLDGGNVTVGCVNMGNPHAVLTVE-NTESAAVAE 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP F E VN+   ++ +   + LR +ERGVG T ACG+ ACA+ V        
Sbjct: 182 LGAQIEPHPQFPEKVNVGFMQILNRRHIKLRVFERGVGETRACGTGACAAAVYGVRAGWL 241

Query: 243 NR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    + V + GG LLI W     VFMTG A+  +EG+L
Sbjct: 242 DEGEDIRVSLPGGDLLIAWQSGGDVFMTGPAETVFEGEL 280


>gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
 gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
          Length = 286

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 144/282 (51%), Gaps = 9/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +  GN  ++ +        +S+ +  L         D ++ +    DA  D  +
Sbjct: 1   MYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGVIYVLPSLDA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE + CGNG+RC  +F      + + SF+ ET  GIL  +  ++G++ VDMG 
Sbjct: 59  RIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMGI 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IP+     K+  D        +   R    VSMGNPH + F +  +   ++ +
Sbjct: 119 PNLNSDDIPVKGFSKKVIIDELLNISHENKAYR-INCVSMGNPHCVIFTDK-IDGINIEA 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+++  H  F +  N+   +  S   L ++ WERG G+T ACG+ +CA+VVA+   +  
Sbjct: 177 DGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAAILNNLV 236

Query: 243 NRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
           N    V + GG L I W  +  NHVFMTG A+K ++G +++ 
Sbjct: 237 NNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 278


>gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
 gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
          Length = 290

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 145/283 (51%), Gaps = 9/283 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++ F+K +  GN  ++ +        +S+ +  L         D I+ +    DA  D  
Sbjct: 4   LMYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGIIYVLPSLDA--DFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE + CGNG+RC  +F      + + SF+ ET  GIL  +  ++G++ VDMG
Sbjct: 62  MRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L+   IP+     K+  D        +   R    VSMGNPH + F +  +   ++ 
Sbjct: 122 IPNLNSDDIPVKGFSKKVVIDELLNISHENTAYR-INCVSMGNPHCVIFTDK-IDSINIE 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G+++  H  F +  N+   +  S   L ++ WERG G+T ACG+ +CA+VVA+   + 
Sbjct: 180 ADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAATLNNL 239

Query: 242 TNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
            N    V + GG L I W  +  NHVFMTG A+K ++G +++ 
Sbjct: 240 VNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 282


>gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 277

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++         +  A            D ++LI   +    D  +
Sbjct: 1   MKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILV----AKENRDGSISV 118
           ++ N DGS  + CGNG+RCV    +      +   + ET+ GI       +E +   + V
Sbjct: 59  KMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PI   + IP+    D        +    +        +SMGNPHA+ +++ D+ + 
Sbjct: 119 DMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM----TCISMGNPHAVVYLD-DIQNM 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G     HP F   VN   A V   E++++R WERG G T ACG+ ACA  VAS  
Sbjct: 174 EIEKIGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGACAVAVASMV 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              T   V+V++LGG L IEW  + N V+MTG A   ++G+L
Sbjct: 234 NGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275


>gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
 gi|167654139|gb|EDR98268.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
          Length = 285

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 135/288 (46%), Gaps = 14/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  + ++         ++    +S        D ++ IH    A  
Sbjct: 4   RSDSMKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA-- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDG 114
           D  + + N DG+E   CGNG+RC+ +++         T        +       ++ +  
Sbjct: 62  DFRMAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVT 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDM  P+L+   IP+    +K   D+  I             VSMGNPH + FV+  
Sbjct: 122 WVNVDMEAPVLEADKIPVIYDEEKKVIDKPVIVD---GREYRITCVSMGNPHGVVFVD-S 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   D+   G +   HPMF + VN    +V    ++ +R WERG G T ACG+ ACAS  
Sbjct: 178 VDDLDIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAY 237

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           AS    KT   V V +LGG L IE+ +  H +FM G A K ++G++D+
Sbjct: 238 ASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285


>gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
 gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
          Length = 360

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 125/285 (43%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++++ R               +  L         D +++      A
Sbjct: 1   MLQFSKYQGLGNDFILLEGRSGQLSAAICEPDPAWVRRLCDRRFGIGADGLIVALPPAAA 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RFL         +++  ET  G+++     DG 
Sbjct: 61  G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTLLADGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P L  + +P A             G V     R     +      +    DDL
Sbjct: 120 IQVDMGRPFLQPEQVPTALPVGAAG---LPQGEVELDGRRLALAAAGMGNPHVVVTVDDL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                  +G  L   P+F    N+   +V S   L +R WERG G T ACG+ ACA++VA
Sbjct: 177 DQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L        V + GG L I W D +  + MTG A+  ++G L
Sbjct: 237 AHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVL 281


>gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18]
 gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18]
          Length = 276

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       +    AI   + +     D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEETVQDPAKVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +               + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKEITAETGAGILTLQLFTGQDSKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L  K IP+  + D+   +       +     +    SMGNPH + FV+ D+  
Sbjct: 119 VNMGPPRLTRKEIPMLGNPDEKVINEPLNILHS---TFHITCASMGNPHCVIFVD-DVDK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G ++  H MF    N+   +V S   +  RTWERG G T ACG+ + A   A  
Sbjct: 175 FPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAVTAACV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               T + +   + GG L +EW ++ +++MTG A + + G++
Sbjct: 235 LNGLTGKKILNHLSGGDLEMEWSEDGNIYMTGPAVEVFSGEI 276


>gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
           27755]
 gi|166029593|gb|EDR48350.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 146/285 (51%), Gaps = 12/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++      +   +    +S        D +++I+  + A  D  +
Sbjct: 7   MKFTKMQGLGNDYVYVNCFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPSKVA--DFEM 64

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      +   + ET+ GI       K+ +   + V
Sbjct: 65  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVKDGKVALVRV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP LD + IP+       + DR     +       +   VSMGNPH + +++ ++  
Sbjct: 125 DMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMTGVSMGNPHDVVYID-NVQG 183

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     H  F + +N   ARV   +++++R WERG G T ACG+ ACA  VAS 
Sbjct: 184 LDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGACAVAVASI 243

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               T R V +++LGG L IEW+ ++NHV+MTG A   ++G++++
Sbjct: 244 LNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288


>gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
 gi|156865059|gb|EDO58490.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
          Length = 278

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + I+      +N    AI           D ++LI     A  D  +
Sbjct: 1   MKFTKMEGLGNDYVYINCFSEKVENPEKLAIAMSDRHFGVGSDGVILIKPSDKA--DFTM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG----ILVAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      + S + ET+ G      V K+ +   ++V
Sbjct: 59  DMYNADGSRSEMCGNGIRCVGKYVYDYGLTDKTSISVETLAGIKYLDFVIKDGKVDMVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL    +P+    +++  ++  +  V++        VSMGNPHA+ FV+ D  H+
Sbjct: 119 DMGAPILKADQVPVRSDKEQVIDEKITVAGVDYHM----TCVSMGNPHAVMFVD-DTEHF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G L   H +F   VN    +V    ++ +R WERG G T ACG+ ACA+ VA   
Sbjct: 174 PLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACATAVACVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             KT+  V+VK+LGG L+I +  +NN V+MTG A+  ++G+ D
Sbjct: 234 NGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGETD 276


>gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
 gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
          Length = 283

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/278 (33%), Positives = 130/278 (46%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K EG+GN  ++ID R   + +    +A            D ++ +    +   D  
Sbjct: 8   LSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLL-SAETGADFR 66

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDM 120
           +RI N DGSE Q CGNG+RC+  F            +  ET  G+L      DG + VDM
Sbjct: 67  MRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRVDM 126

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L    IP   +    D+                  V+MGNPHA+ FV+ +L   DL
Sbjct: 127 GPPHLLADEIPTTLA--PADQKAVAASIPVGGVDWRVTCVNMGNPHAVVFVD-ELATVDL 183

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG L  +   F E VN   A V S   L ++ WERG G T ACG+ ACA +VA+    
Sbjct: 184 HRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAVLNG 243

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            ++   +V++ GG + I W    NH+ MTG A+K + G
Sbjct: 244 LSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSG 281


>gi|149204847|ref|ZP_01881809.1| diaminopimelate epimerase [Roseovarius sp. TM1035]
 gi|149141717|gb|EDM29772.1| diaminopimelate epimerase [Roseovarius sp. TM1035]
          Length = 277

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/275 (36%), Positives = 137/275 (49%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D RG    +T   I A++       FDQ+ +I        DA +
Sbjct: 9   LPFFKMHGLGNDFVVLDGRGRDLGLTPALIMAIADRHRGIGFDQLAVI---SQGMGDAHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R L     +      T RG LVA +   G  SV+MG+P 
Sbjct: 66  TFYNADGSTSAACGNATRCIARHLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA + D ++                P    MGNPH  FFV  D     LA FG
Sbjct: 126 LDWAEIPLAEAMDTLEL----------PIEGGPVATGMGNPHCTFFV-ADAEAVPLAQFG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A V   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           AV V + GG + ++W ++  V+MTGE      G  
Sbjct: 235 AVRVDLDGGTIHVDWREDG-VWMTGETAHVASGVF 268


>gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
           nagariensis]
 gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
           nagariensis]
          Length = 323

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 15/293 (5%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
            +S + F+K +G+GN  ++ID R   + + T +    +         D ++         
Sbjct: 33  SASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGVIFALPP-VGD 91

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            D  +RI N DGSE + CGNG+RC+ +F     +   + +   T+ G++  +   DG + 
Sbjct: 92  TDLTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKAAPRKYKIHTLAGLIQPELLADGQVR 151

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV------ 171
           VDMGEPIL+   +P   +             +          VSMGNPHA+ +       
Sbjct: 152 VDMGEPILEGAKVPTTLA-PTQGSTVVQQDLIVDGKTYKVSCVSMGNPHAVIYSCDGDTI 210

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + D    DLA  G    ++ +F    N     V +   + +  WERG G T ACG+ ACA
Sbjct: 211 KIDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGRTLACGTGACA 270

Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            VVA     + +R     V + GG L IEW+ ++NH++MTG A+  + G L +
Sbjct: 271 LVVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGALRV 323


>gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 281

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 15/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  ++ID R   + +     A+           D ++     Q A+ D  
Sbjct: 3   IPFTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFALPGQ-AATDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI N DGSE + CGNG+RC+ +F+     +    +++   T+ G ++ +   +  ++VD
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVD 121

Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           MG P L    IP  L +  +K+      +   + L       VSMGNPH + FV+ DL  
Sbjct: 122 MGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLI----TCVSMGNPHCVTFVD-DLAS 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G     HP+F +  N+    V   + + +R WERG G+T ACG+ ACA VVA+ 
Sbjct: 177 IPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVAAV 236

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              K +R  +V++ GG L I W D +N V+MTG AK  +EG   I
Sbjct: 237 STAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEGIYAI 281


>gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
 gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
          Length = 286

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 16/286 (5%)

Query: 5   MVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+   R    + +  A+   +       D ++ I     A  D  
Sbjct: 8   MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 65

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-------IRGILVAKENRDGSI 116
           +RI+N DGSE + CGN +RCV +++                     +  L  ++ +  S+
Sbjct: 66  MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 125

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V+D + 
Sbjct: 126 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVEGREFRF----TAVSMGNPHCVIYVDDAVN 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +DL  +G  L  HP+F   +N+  A V S   +D+R WERG G T ACG+ ACA++V+S
Sbjct: 182 -FDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 240

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                T+R+ ++ + GG L IEW + +NHV+MTG A+  ++GKL I
Sbjct: 241 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286


>gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 278

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 152/285 (53%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  LV        DN++  AI           D ++ I     A  D  +
Sbjct: 1   MEFTKMHGLGNDFLVFYGEQQLPDNVSELAIRWCDRYFGVGGDGLVFILPSDKA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RIIN DG+E + CGN +RCV +++     + + S T ET+        L  ++    ++ 
Sbjct: 59  RIINSDGTEAEQCGNAIRCVAKYVYDNRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPILD   IP   + + +             F      VSMGNPH + +V+ D  +
Sbjct: 119 VDMGEPILDGLTIPTTLNQNPVVSQPIETNGQEFKF----TAVSMGNPHCVIYVD-DAPN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +D+ ++G  L  HP F   +N+  A VT+ + +++R WERG G T ACG+ ACA++V+S 
Sbjct: 174 FDVTTWGPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACATLVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               T+RA  + + GG L IEW + +NHV+MTG A+  ++G ++I
Sbjct: 234 LNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSVEI 278


>gi|297183608|gb|ADI19735.1| hypothetical protein [uncultured bacterium EB000_36F02]
          Length = 274

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 140/276 (50%), Gaps = 4/276 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R  +  ++ D I  +   +    DQ+++I   ++  +DA + 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRIENIELSKDQIIKICNRNFIGCDQLIIIK--KNPKLDAELE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV  FL+    +K  T  T  G+L +       +  ++G P  
Sbjct: 61  FYNSDGSPTGACGNGTRCVADFLSKENNQKEITVWTSSGVLKSNILGSNLVETEIGTPKT 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPL+++ D  + +   I   N+        V++GNPH +FFV+ D+ ++DL   G 
Sbjct: 121 NWNEIPLSKNLDTKNLN-IKILSKNNTEHIGGAAVNVGNPHIVFFVK-DIENFDLKKIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H +F E  N+++A+V +   + ++ WERG GLT ACG+AACAS +A        + 
Sbjct: 179 EIENHKLFPEKCNVTLAKVINKNLIKVKVWERGSGLTKACGTAACASAIAGNINGFVEKK 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             ++   G L I     N V M G        ++ I
Sbjct: 239 TDIEFKLGKLSIFIDAKNSVHMKGSVSDIKNIEIKI 274


>gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
           56601]
 gi|29839327|sp|Q8F9V5|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 281

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  + ID       +T + I  +S        D ++ I + +    D  +
Sbjct: 4   LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117
            + N DGS  + CGNG+RCV +++        K+   ET  GIL         N+   +S
Sbjct: 62  DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P+L    IP+    ++   D+       +L       VSMGNPH + FV+ D   
Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNL---KFTAVSMGNPHCVIFVD-DSDE 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G L+ +H +F + VN+    +   + L  RTWERG G T ACG+ ACA +VA  
Sbjct: 178 FPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGN 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I
Sbjct: 238 LTRRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281


>gi|303256277|ref|ZP_07342293.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47]
 gi|330998973|ref|ZP_08322698.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT
           11859]
 gi|302861006|gb|EFL84081.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47]
 gi|329575715|gb|EGG57241.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT
           11859]
          Length = 284

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 7/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      ++T   +  L+        DQI+++   +    D   
Sbjct: 3   IKFTKMHGAGNDFVVLDCTREPFSLTPQQLRFLADRHFGIGADQILVVEPAEAGEADFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+ ++   +      +T++G++  +   DG + V MG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVSMGT 122

Query: 123 PILDWKLIPLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P  +   +P           R            L    V SMGNPH +  V DD+    +
Sbjct: 123 PSFEPSSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPH-VTIVTDDIESAPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F   VN+   +  +    ++R WERG G T ACG+  CA+   S  L 
Sbjct: 182 KELGPFIENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSIELG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
             +  +     GG L + W      V + G A   ++ ++++ 
Sbjct: 242 VLSSPILTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP 284


>gi|170751705|ref|YP_001757965.1| diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831]
 gi|170658227|gb|ACB27282.1| Diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831]
          Length = 325

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/279 (43%), Positives = 160/279 (57%), Gaps = 6/279 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +  +   A++ D  + FDQ+M++HD      DAF+RI
Sbjct: 38  RFLKMHGAGNAIVVLDLRGSAAKVRPEEARAIAQDPGSTFDQLMVLHDPVSPGADAFMRI 97

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSF------TFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV   +                 ET  G+L  +   + + +VDM
Sbjct: 98  YNTDGSESGACGNGTRCVAYAMLDDPAMARPAEGGRLVLETRAGLLGVRRVSERAFTVDM 157

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W  IPL+  F    R    IGP++   L +P  V+MGNPHA+FFVE D   +DL
Sbjct: 158 GRPRLAWDEIPLSEPFPDTRRIELQIGPIDDPILHSPGAVNMGNPHAVFFVEQDPDSFDL 217

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G +L  HP+F E  N+S+A+VT  E++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 218 ARIGPMLENHPLFPERANISVAQVTGRETIKLRVWERGAGLTLACGTAACATVVAASRLR 277

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              R  SV + GG L +EW  ++HV MTG      EG L
Sbjct: 278 MIGRQASVALPGGELFVEWRADDHVLMTGPVALVAEGTL 316


>gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
 gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
          Length = 278

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 130/284 (45%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       +  + AI   + +     D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +               + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKNEITAETGAGILTLQLFTDAGCKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L  K IP+    ++   +       +     N    SMGNPH + FV+ D+  
Sbjct: 119 VNMGPPRLTRKEIPMLGEPEERVVNVPLNVLHSS---FNITCASMGNPHCVIFVD-DVDT 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A  
Sbjct: 175 FQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAACV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T + +   + GG L +EW ++ +++MTG A + + G++D+
Sbjct: 235 LNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDL 278


>gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307]
 gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307]
          Length = 357

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 127/277 (45%), Gaps = 10/277 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G+GN  +++D R           A            D ++L    Q    D  ++
Sbjct: 19  FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGG-DVRMQ 77

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGE 122
           I+N DGSE + CGNG+RC  RFL           +  ET  G+++ +      ++VDMGE
Sbjct: 78  ILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGE 137

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L+   IP   +                        V MGNPHA+  V+ DL   D   
Sbjct: 138 PFLEPASIPTNLA---AGTPLPDGELQVAGISLQVAAVGMGNPHAVVQVD-DLESLDFDR 193

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L +HP F    N+   +V + + L +R WERG G T ACG+ ACA+VVA+      
Sbjct: 194 LGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLRGAC 253

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R  +V++ GG L I+W   NH+ M G A   +EG L
Sbjct: 254 ARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVL 290


>gi|294851174|ref|ZP_06791847.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026]
 gi|294819763|gb|EFG36762.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026]
          Length = 294

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/282 (51%), Positives = 192/282 (68%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I IINCD
Sbjct: 1   MNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW+ I
Sbjct: 61  GTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL  H
Sbjct: 121 PLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLLENH 180

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+V +
Sbjct: 181 PIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVTVNV 240

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
            GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  + 
Sbjct: 241 PGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 282


>gi|194700330|gb|ACF84249.1| unknown [Zea mays]
          Length = 308

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A      +     D ++ +    +  
Sbjct: 20  SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-G 78

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +      FT  T  G +V +   DG +
Sbjct: 79  ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQV 138

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMGEPIL    IP        ++              +   VSMGNPH + F  ++  
Sbjct: 139 KVDMGEPILSGLDIPTKL-LATKNKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 197

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    L+  G     H MF    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 198 VLQVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACA 257

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            VVA+    +  R   V + GG L IEW + +NHV+MTG A+  + G +
Sbjct: 258 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 306


>gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
 gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
          Length = 279

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 151/286 (52%), Gaps = 16/286 (5%)

Query: 5   MVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++F KM G+GN  +V+   R    + +  A+   +       D ++ I     A  D  
Sbjct: 1   MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRG-----ILVAKENRDGSI 116
           +RI+N DGSE + CGN +RCV +++           T ETI        L  ++ +  S+
Sbjct: 59  MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V+D + 
Sbjct: 119 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVDGREFRF----TAVSMGNPHCVIYVDDAVN 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +DL  +G  L  HP+F   +N+  A V S   +D+R WERG G T ACG+ ACA++V+S
Sbjct: 175 -FDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                T+R+ ++ + GG L IEW + +NHV+MTG A+  ++GKL I
Sbjct: 234 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279


>gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
 gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
          Length = 372

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  ++I+ R    +          +  +         D I+L    +  
Sbjct: 1   MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI N DGSE + CGNG+RC+ RF          +S++ ET  G+++     DG 
Sbjct: 61  G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P+L    +P   +  +    +  +       L     V MGNPH +  V  DL
Sbjct: 120 IKVDMGAPMLAPDTVPTTLAVGEQGLPQGELTINGD--LLKVAAVGMGNPHVVVPV-PDL 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L   P F    N+   +V   ++LD+R WERG G T ACG+ ACA++VA
Sbjct: 177 ASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGTGACATLVA 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L  +     V + GG L I W D    VFMTG A+  ++G +
Sbjct: 237 AHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDGVV 281


>gi|225628131|ref|ZP_03786166.1| diaminopimelate epimerase [Brucella ceti str. Cudo]
 gi|260169356|ref|ZP_05756167.1| diaminopimelate epimerase [Brucella sp. F5/99]
 gi|261758874|ref|ZP_06002583.1| diaminopimelate epimerase [Brucella sp. F5/99]
 gi|225616956|gb|EEH14003.1| diaminopimelate epimerase [Brucella ceti str. Cudo]
 gi|261738858|gb|EEY26854.1| diaminopimelate epimerase [Brucella sp. F5/99]
          Length = 303

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/285 (50%), Positives = 193/285 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +  R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG  + E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPTEWEFSGTFDPATGEWSRDTQG 291


>gi|118602558|ref|YP_903773.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225752|sp|A1AWJ5|DAPF_RUTMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118567497|gb|ABL02302.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 271

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +++D         ++ I  L+       FDQ++L+      +VD  
Sbjct: 2   LINFVKMHGLGNDFMMVDNLAGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
             I N DG EV+ CGNG RC   F++ +          ET  GI+    N D ++ VDMG
Sbjct: 62  YVIYNADGLEVEQCGNGARCFAFFVSKKGLSNNNPIVVETRSGIINLYLNDDNTVRVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   I L                   +   +   VS+GNPH +  VE D+   D++
Sbjct: 122 KPSFNPADILLLVPQQSTYYQ---------IEGFDLGAVSIGNPHCVMLVE-DVNTVDVS 171

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S    + +  +     N+   ++ +   ++LR +ERG G T ACGS ACA+VV       
Sbjct: 172 SIALRIQQSELLPNQANIGFMQILNTHEINLRVYERGSGETLACGSGACAAVVYGVEQGL 231

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               V   + GG  LIE+    HVF++G  +  +EGK++I
Sbjct: 232 LKENVVAHLNGGDTLIEYIQGGHVFLSGPVQFVFEGKVEI 271


>gi|326388654|ref|ZP_08210247.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206905|gb|EGD57729.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 269

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/275 (37%), Positives = 145/275 (52%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R     +++    AL+        DQ++L+   + A  D  +
Sbjct: 3   IPFRKMHGLGNDFVVIDARERAVEMSARRAAALADRHTGIGCDQLILLEPSETA--DVRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DG EV++CGN  R V  +L    + +        G ++A    D  ISV MG P 
Sbjct: 61  RIFNPDGGEVEACGNASRAVGLYLGGDKRIE------TLGGIIAASTSDTGISVAMGRPR 114

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IPLA   D +        PV    L  P  V++GNPH IFFV  D +  DLA  G
Sbjct: 115 FGWDEIPLAYPMDTL------TMPVGWEDLVEPVAVNVGNPHVIFFV-PDTHSVDLARLG 167

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+   P+F   +N+++A +T  ++LDLR WER  GLT ACG+ ACAS +A+     T R
Sbjct: 168 PLIENDPLFPRRINVNVATLTGPDALDLRVWERAAGLTRACGTGACASAIAAMRRKLTGR 227

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V+V + GG L+IEW D + + MTG A   +EG  
Sbjct: 228 RVTVTLPGGPLVIEWTDADEIIMTGPATTSFEGSF 262


>gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
 gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
          Length = 280

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 8/283 (2%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++ +R    +    +I   S       D ++LI     A  D
Sbjct: 2   ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +    V+
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVE 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                +D  L+  +R  +  D                   V MGNPH + F++ D+ + +
Sbjct: 119 EVTVDMDLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVN 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 178 LPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLN 237

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           HKT R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 238 HKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280


>gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
 gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
          Length = 278

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 133/284 (46%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++         ++    +S        D ++ IH    A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DG+E   CGNG+RC+ +++         T        +       ++ +   ++V
Sbjct: 59  AMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVNV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DM  P+L+   IP+    +K   D+  I             VSMGNPH + FV+  +   
Sbjct: 119 DMEAPVLEADKIPVIYDEEKKVIDKPVIVD---GREYRITCVSMGNPHGVVFVD-SVDDL 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G +   HPMF + VN    +V    ++ +R WERG G T ACG+ ACAS  AS  
Sbjct: 175 DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAYASYL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             KT   V V +LGG L IE+ +  H +FM G A K ++G++D+
Sbjct: 235 NQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278


>gi|226952076|ref|ZP_03822540.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244]
 gi|226837168|gb|EEH69551.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244]
          Length = 284

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/280 (33%), Positives = 141/280 (50%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++L+       VD   
Sbjct: 3   LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLLVEPPDFPDVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     D  D +  +   +      N  VV+MGNPHA+  V  D+   D+A 
Sbjct: 123 PKFLPDEIPFVTQVD-EDIEGLYSLELADDKSINIDVVNMGNPHAVTIV-PDVLTADVAG 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+       
Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 241 ASEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280


>gi|17544856|ref|NP_518258.1| diaminopimelate epimerase [Ralstonia solanacearum GMI1000]
 gi|21362465|sp|Q8Y344|DAPF_RALSO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|17427145|emb|CAD13665.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 292

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 130/286 (45%), Gaps = 7/286 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      + T +   A++        DQ++L+       VD   
Sbjct: 3   LHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC V+F+T R    +++   E + GI       DG ++VDMG 
Sbjct: 63  RIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGISTLTMQPDGQVTVDMGA 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ +   +P          +          +        VSMGNPHA+  V+ D   + +
Sbjct: 123 PVFEAARLPFVPDALPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQVVD-DAEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  H +F   VN     +    ++ LR +ERG G T ACG+ ACA+ VA     
Sbjct: 182 REDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAAVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
             +  V V   GG L I W      V MTG A   +EG LD+   K
Sbjct: 242 LLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287


>gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
 gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
          Length = 279

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 8   FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++++       D++ + +            D ++L+   Q A  D  +R
Sbjct: 5   FTKWQGCGNDFVLVNGFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQA--DFRMR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISVD 119
           I N DG+E + CGNG+RC    + +        FT ET  GILV +    GS    + VD
Sbjct: 63  IFNADGTEAEMCGNGIRCFAGVVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVRVD 122

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEPIL+ + IP+         ++            +   VSMGNPH + FVE D     
Sbjct: 123 MGEPILEGERIPVLGFGASRVIEQPIEA---EGETFSMTCVSMGNPHCVIFVE-DAQDVP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +  FG LL +H  F +  N+  A +     + +R WERG  +T ACG+ +CA++VA+   
Sbjct: 179 MEKFGPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLVAAALT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +T R   V++ GG L IEW +N+HV+MTG A+K + G+ +
Sbjct: 239 GRTKREAEVQLDGGRLQIEWAENHHVYMTGPAEKVFAGRYE 279


>gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
 gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
          Length = 293

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 135/288 (46%), Gaps = 14/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQD-ASVDA 62
           + F KM GIGN  + I         + ++ A+           D ++L+   +  +  DA
Sbjct: 3   LRFVKMHGIGNDYIYISGFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEADA 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKEN--------RD 113
            +R+ N DGSE   CGNG+RCV +FL      ++       +G  V   +        R 
Sbjct: 63  VMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDRV 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + V+MG PIL    IP     D        +             VSMGNPH + FVE 
Sbjct: 123 RRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVE- 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   DL   G LL +H  F + VN+ +A+V + +   +RTWERG G+T ACG+ ACA +
Sbjct: 182 DVASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTGACAVL 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
           VA     +T RA  + + GG L +EW  +   V MTG A   +EG  D
Sbjct: 242 VAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEGVWD 289


>gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2]
 gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2]
          Length = 276

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V         + +  A+           D ++ I     A  D  +
Sbjct: 1   MEFTKMNGLGNDFIVWYGHQELPSDASELAVRLCDRHFGIGADGLVYILPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RIIN DGSE + CGN +RC     +    + R+  T ET+        L  +      + 
Sbjct: 59  RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP       +  +    G     F      VSMGNPH + +VE D   
Sbjct: 119 VDMGEPILEGLKIPTTLDLTNVIDEPIEAGGSGFRF----TAVSMGNPHCVIYVE-DAPS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F +  N+  A V S + +D+R WERG G T ACG+ ACA++VAS 
Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               ++R   V + GG L IEW  D+NH++MTG A+  +EG++
Sbjct: 234 LNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276


>gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera]
          Length = 307

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 138/291 (47%), Gaps = 13/291 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F K  G+GN  +++D R   +  +T +    L         D ++         
Sbjct: 19  ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPG-ING 77

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +   ++SFT  T  G++V +   DG +
Sbjct: 78  TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 137

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171
            VDMG+PIL    +P     +  D+              N   VSMGNPH + F      
Sbjct: 138 KVDMGKPILKALDVPTKLPAN-KDQSVVKSELNVDGVSWNVTCVSMGNPHCVTFGTKGGQ 196

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +   +LA  G     H MF    N    +V S   L +R WERG G T ACG+ ACA
Sbjct: 197 NLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGACA 256

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            VVA+       R+ +V + GG L IEW  ++NHV+MTG A+  + G + +
Sbjct: 257 VVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 307


>gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
 gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
          Length = 277

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 134/284 (47%), Gaps = 15/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      ++    AI           D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFKETVEDPEKTAILVSDRHFGIGSDGLILIKPSSVA--DGKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGS+   CGNG+RCV +++         +        +       +  +  ++ V
Sbjct: 59  EMYNADGSQGAMCGNGIRCVAKYMYDYGITDKTSISVETKSGIKYLDLTVENGKVSAVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P+L    IP     + +  +   +             VSMGNPHA+ +VE D+ H 
Sbjct: 119 NMGSPVLQAAAIPAVSEKETVIDEPVTVNGREWRL----TCVSMGNPHAVTYVE-DVKHL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G     HPMF + VN   A V    ++++R WERG G T ACG+ ACA+ VAS  
Sbjct: 174 DIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACATAVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              T   V+VK+LGG L I W    N+V+MTG A   ++G++ +
Sbjct: 234 NGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEIAL 277


>gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
 gi|81577635|sp|Q7V7M5|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
          Length = 303

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 136/285 (47%), Gaps = 14/285 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+ID R         N     +  +         D ++L    + A
Sbjct: 4   MLQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  ++I N DGS  + CGNG+RC+ RF   +   +  + +  ET+ GI+      DG 
Sbjct: 63  DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQ 122

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG P LD + IP   +       +            +   V MGNPH I  VE DL
Sbjct: 123 ICVDMGTPFLDPESIPTTLTIGSAGLPQGEC--HLGSTSLHVAAVGMGNPHLIVPVE-DL 179

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            +    ++G  L KH  F    N+   ++ S   L++R WERG G T ACG+ ACAS+VA
Sbjct: 180 ENIPFENWGQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGACASLVA 239

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L  ++    V + GG L I W      VFMTG A+  ++G L
Sbjct: 240 TCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDGVL 284


>gi|220904420|ref|YP_002479732.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254767100|sp|B8IZX7|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 287

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 134/286 (46%), Gaps = 13/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + I+      +   +    +S        D ++LI     A+ D  +
Sbjct: 5   LRFTKMQGIGNDYVYINGFQERIDSPGELARKISDRHFGIGSDGLVLILPS--ATADVRM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRD----GSISV 118
           R+ N DGSE + CGN +RCV +++     +     T ET  G+ + +   +       +V
Sbjct: 63  RMFNADGSESEMCGNAVRCVGKYVYDHGIQVKDVITVETRAGVKIVRLLFEAGKVCGATV 122

Query: 119 DMGEPILDWKLIPLARS--FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           DMGEP L    IP+      D   +         +  L     VSMGNPHA+ F++  + 
Sbjct: 123 DMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKG-ID 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G     HP+F +  N   A V S   + +R WERG G T ACG+ ACA  VA 
Sbjct: 182 DLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVAVAC 241

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                  R V V++ GG L I W + +NHV+MTG A   + G+  I
Sbjct: 242 VLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287


>gi|82703657|ref|YP_413223.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196]
 gi|123543877|sp|Q2Y5Z0|DAPF_NITMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|82411722|gb|ABB75831.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196]
          Length = 277

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 133/281 (47%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID      +++ + +  L+        DQI+LI   +    D   
Sbjct: 3   LKFTKMHGLGNDFIVIDAVNQQISLSPEQLRRLADRHLGVGCDQILLIEKAE-GDADFRY 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VR++             ET+ G+++ +   DG ++V+MG 
Sbjct: 62  RIFNADGGEVEQCGNGARCFVRYVHDHGMTDKQQVRIETLSGVVIPELEADGEVTVNMGV 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  D   IP                    +       VSMGNPHA+  V  DL +  + +
Sbjct: 122 PKFDPVEIPFIAEQRAPTYSLSLDDRQVEI-----SSVSMGNPHAVQVVS-DLDNAPVLT 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++ KH  F + VN    +V     + LR +ERG G T ACG+ ACA+ VA       
Sbjct: 176 EGPVIEKHSRFPQRVNAGYMQVVDPHHIRLRVYERGAGETLACGTGACAAAVAGIQRGLL 235

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
              V V    G L I W  +N  V+MTG A   ++G+++++
Sbjct: 236 ESPVRVSFSTGDLFIRWEGENQPVWMTGPAVAVFDGEIELQ 276


>gi|122203466|sp|Q2QNF7|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
           epimerase; Flags: Precursor
 gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
           Japonica Group]
 gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group]
          Length = 354

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 127/288 (44%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A      +     D ++ +    +  
Sbjct: 66  SERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-G 124

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +     SF   T  G+++ +   DG +
Sbjct: 125 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKV 184

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMG+PIL    IP        +                   VSMGNPH + F   +  
Sbjct: 185 KVDMGQPILSGPDIPTKLPS-TKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELK 243

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    L+  G     H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 244 VLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 303

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
            VVA+    +  R   V + GG L IEW + +NH++MTG A+  + G 
Sbjct: 304 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 351


>gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
 gi|123506579|sp|Q2JUV6|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
          Length = 285

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 16/288 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M S  + F K +G+GN  +++D R      +T +   AL         D ++ +   Q+ 
Sbjct: 1   MPSR-LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQE- 58

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGS 115
             D  +R+ N DGSE + CGNG+RC+ RFL           +   T+ G +V +   DG 
Sbjct: 59  GADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGL 118

Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           ++VDMG P L    IP  LA+  +K+ R    +G            VSMGNPH + F+E+
Sbjct: 119 VTVDMGIPRLLAGQIPTTLAKPEEKVVRQPLQVGGRE----WAVTAVSMGNPHCVVFLEE 174

Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              L   DL   G L   HP F E  N   A+V     L LR WERG G+T ACG+ ACA
Sbjct: 175 GGSLEELDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGACA 234

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
           ++VA+    +     +V++ GG L I W  +  HV+MTG A   + G 
Sbjct: 235 ALVAAVLEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSGT 282


>gi|254717991|ref|ZP_05179802.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|265982937|ref|ZP_06095672.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|306839770|ref|ZP_07472571.1| diaminopimelate epimerase [Brucella sp. NF 2653]
 gi|264661529|gb|EEZ31790.1| diaminopimelate epimerase [Brucella sp. 83/13]
 gi|306405125|gb|EFM61403.1| diaminopimelate epimerase [Brucella sp. NF 2653]
          Length = 303

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 147/285 (51%), Positives = 193/285 (67%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+IT  A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GPV+   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++     T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGHTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +    
Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDMHG 291


>gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
 gi|229807506|sp|A4J568|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
          Length = 284

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ G+GN  ++++    +G  D+ ++ A            D ++L++D      D 
Sbjct: 1   MYFTKVHGLGNDFILVNAGTGQGFTDDCSTLAKEVCDRKFGIGADGLVLLYDS--GVADV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD----GSI 116
            ++I+N DGSE + CGN +RCV ++L     +K+     ET+ GI+V +  +      ++
Sbjct: 59  RMKIVNSDGSEAEMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMGEP ++   IP+     ++  +   +    +L       VSMGNPH I FV  DL 
Sbjct: 119 RVDMGEPRVERAEIPMIGPPGQVIGEELAVNGKVYL----VTAVSMGNPHCIIFV-PDLE 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L   G  +  HP F +  N+   +V     + +  WERG G T ACG+ ACA  VA 
Sbjct: 174 DISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAG 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                T R V+V + GG L+IEW +N  ++MTG A + + G+  +
Sbjct: 234 VLNGFTERMVTVHLPGGSLMIEWAENGRIYMTGPATEVFSGEYTV 278


>gi|294651117|ref|ZP_06728453.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823011|gb|EFF81878.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194]
          Length = 284

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++++       VD   
Sbjct: 3   LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     D  D +  +   +      N  VV+MGNPHA+  V  D+   D+A 
Sbjct: 123 PKFLPDEIPFVTQVD-EDIEGLYSLELADDKSINIDVVNMGNPHAVTIV-PDVLTADVAG 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+       
Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280


>gi|262369522|ref|ZP_06062850.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046]
 gi|262315590|gb|EEY96629.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046]
          Length = 281

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  L+       FDQ++++      +VD  
Sbjct: 2   LLEFTKMHGLGNDFMVVDLISQRAFLDTVTIQRLADRHFGIGFDQLLIVEPPDLPNVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +  ++G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKAGIVEPELGQNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP          +  +   + +       VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFLPQEIPFIADAP----EALYDIALANNEQLTIDVVNMGNPHAVTIV-PDVITADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H  F + VN    ++   +   LR +ERGVG T ACG+ ACA+ ++      
Sbjct: 177 RLGPQVESHERFPQRVNAGFMQIIDEKHARLRVFERGVGETLACGTGACAAAISGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            + +V +++ GG L IEW + + V+MTG     +EG++D+ 
Sbjct: 237 LDSSVEIELAGGKLHIEWREGDVVWMTGPTSNVYEGRIDLS 277


>gi|50085727|ref|YP_047237.1| diaminopimelate epimerase [Acinetobacter sp. ADP1]
 gi|81613095|sp|Q6F950|DAPF_ACIAD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49531703|emb|CAG69415.1| diaminopimelate epimerase [Acinetobacter sp. ADP1]
          Length = 281

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 8/281 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +++F KM G+GN  +V+D+      + +  I  ++       FDQ++++      +VD  
Sbjct: 2   LLEFTKMHGLGNDFVVLDLISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG+RC  RF+  R   K+     +T  GI+  +   +G + V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGVRCFARFVHERQLTKKTKIKVQTKAGIVEPELGPNGWVRVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        + +  +   + +       VV+MGNPHA+  V  D+   D+A
Sbjct: 122 YPKFMPHEIPFVTE----EFEALYTLELANEQSLKIDVVNMGNPHAVTIV-PDVLTADVA 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  H  F + VN    ++   + + LR +ERGVG T ACG+ ACA+ V+      
Sbjct: 177 TMGPQVESHVRFPQRVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
               V V++ GG L I W + + V+MTG     +EG+LD++
Sbjct: 237 LANEVEVELAGGKLQIAWQEGDVVWMTGPTANVYEGRLDLR 277


>gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
 gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
          Length = 272

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/281 (32%), Positives = 125/281 (44%), Gaps = 19/281 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           MV F KMEG GN  + ++          + + A            D +++I    +   D
Sbjct: 1   MVRFTKMEGAGNDYIYVNNLVEQVPEERLPALARALSDRHFGVGADGLIVILPPAEPGYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              R+ N DGSE + CGNGMRC  R+   R    R+    +T  G +V +   D + S  
Sbjct: 61  FRFRMFNADGSEGEMCGNGMRCFARYCYERGLTARRRMRVQTAAGCVVPEVLVDDAGSFA 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                L    I        +   R       +       VV  G PH + FV+ D+   D
Sbjct: 121 GVRVDLGPPRI--------LGDRRIAAEGREYP----VTVVDTGVPHIVIFVD-DVDAVD 167

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA  G  L +HP F   VN++ A       L  RTWERG GLT ACG+ A A +VA+   
Sbjct: 168 LAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTGASAVLVAACLK 227

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +T RA  V+M GG L +EW +   HVF+TG A+   +G  
Sbjct: 228 GRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAEFVCDGVF 268


>gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
 gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
          Length = 394

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 93/314 (29%), Positives = 142/314 (45%), Gaps = 31/314 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD--------------------NITSDAINALS-TDDN 43
           M+ + K +G+GN  L++D RG  D                     +T + I  L      
Sbjct: 1   MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60

Query: 44  THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFE 100
              D +++    ++   +  +RI N DGSE + CGNG+RC+ RF       +  + +  E
Sbjct: 61  IGADGLIVAAPPREGG-ELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVE 119

Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
           T+ G +V +   DGS+ VDMG+P L  + +P           +  +      F       
Sbjct: 120 TLAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIGDAGIPQGSLEAAGESF--QVGAA 177

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
            MGNPH +  V  DL   DL  FG  L  HP F    N+   +V +   L +R WERG G
Sbjct: 178 GMGNPHVVIPV-PDLEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWERGAG 236

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            T ACG+ ACA++V    L    R+  + + GG L I W   ++HV+MTG A+  ++  +
Sbjct: 237 PTLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVFDAVI 296

Query: 280 DIKTGKWIKKNEDD 293
                 W  +  DD
Sbjct: 297 --APSLWDPEGVDD 308


>gi|148251980|ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1]
 gi|166224244|sp|A5E915|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146404153|gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1]
          Length = 289

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 122/277 (44%), Positives = 171/277 (61%), Gaps = 4/277 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM GIGN+I+V+D+R     +T D   A++      +DQ+M++   +    +AFIRI 
Sbjct: 9   FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAAR--VPYDQLMVLQPPRLDGTEAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCVVR +  +  + S TFET  G+L   +       +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPAPDLYTVDMGVPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VV+MGNPHA+F+V+ D+  YDL  FG L
Sbjct: 127 WQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVDGDVNSYDLERFGPL 186

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L + NR V
Sbjct: 187 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIV 246

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + + GG L IEW + ++HV MTG A  E+EG+ + +
Sbjct: 247 QMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQ 283


>gi|258543859|ref|ZP_05704093.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826]
 gi|258520899|gb|EEV89758.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826]
          Length = 280

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 83/277 (29%), Positives = 125/277 (45%), Gaps = 9/277 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V++      +     I AL+       FDQ+++I    DA+ D   RI
Sbjct: 6   FSKMHGLGNDFIVLNALQQPFDWPRARICALADRHSGIGFDQLLIIEPAPDAAHDYAYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGEP 123
            N DGSEV+ CGNG RC  ++L         +       RG +        S   +    
Sbjct: 66  YNADGSEVEHCGNGARCFGKYLRDHSLHPLDRPLRVAIKRGSITIAYVGTDSDGSEQYRV 125

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +     P    F     +R +             +VSMGNPHA+  V+ D+    +A+ 
Sbjct: 126 DMGE---PDFTPFTPAQTERLYQPVSAAGETLEMGIVSMGNPHAVCVVD-DVATAPVAAV 181

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L +HP+F   VN    ++     + LR +ERG G T ACG+ ACA+V         +
Sbjct: 182 GAALQQHPLFPAAVNAGFMQIRDRRHIRLRVYERGAGETQACGTGACAAVAVGIMRGLLD 241

Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           R V V++  G L I+W      ++MTG A   + G+L
Sbjct: 242 REVQVELPRGNLTIQWQGTGQPLYMTGPAATVYHGEL 278


>gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|254767088|sp|B6YS11|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 275

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ID      +   + AI           D ++LI           +
Sbjct: 1   MKFTKMHGAGNDYIYIDCFKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPSDK--CSFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKE----NRDGSISV 118
           R+ N DGSE Q CGN +RCV +++      +  + T ET+ G+   +     ++   + V
Sbjct: 59  RMFNSDGSEAQMCGNAIRCVGKYVYDNGYTRKLNITIETLAGVKQLELFPTNDKIRKVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+PIL  K IP+    +K+  +         +       VSMGNPH + FVE  +   
Sbjct: 119 NMGKPILLAKDIPVIWEKEKLIYETIDFSSEQWIL----TAVSMGNPHVVIFVEK-VSRL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G  +  HPMF E +N+    + SL    +R WERG G T ACG+ ACA++VAS  
Sbjct: 174 DVKRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAALVASVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
             K NR  ++ +LGG L +EW +   HVFMTG+A   + G+ 
Sbjct: 234 NGKLNRKATISLLGGDLELEWDEKTEHVFMTGDASLVFIGEF 275


>gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
 gi|212662618|gb|EEB23192.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
          Length = 280

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 8/283 (2%)

Query: 3   SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++ +R    +    +I   S       D ++LI     A  D
Sbjct: 2   ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +    V+
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVE 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                +D  L+  +R  +  D                   V MGNPH + F++ D+ + +
Sbjct: 119 EVTVDMDLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVN 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G  L  HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 178 LPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLN 237

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           HK  R   V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 238 HKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280


>gi|90421739|ref|YP_530109.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18]
 gi|122477672|sp|Q21CU6|DAPF_RHOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|90103753|gb|ABD85790.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18]
          Length = 288

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 123/274 (44%), Positives = 172/274 (62%), Gaps = 4/274 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +++    A++++    +DQ+M++   +    +AF+RI 
Sbjct: 9   FSKMNGIGNEIVVLDLRDHPVAVSAADARAIASE--VPYDQLMVLQPPRTPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGSE  +CGNGMRCV R + +     + TFET  G+L          +VDMG P L W
Sbjct: 67  NNDGSESSACGNGMRCVARQVFATSASDALTFETRAGLLNCWRPAPNLYTVDMGPPKLGW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K IPLA  F         IGP++   L  P VVSMGNPHAIF+V+ D+  +DLA FG LL
Sbjct: 127 KDIPLAEEFRDTRSIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAHDLARFGPLL 185

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+++A++   + + +RTWERGVGLT ACGSAACA+ VA+  L + NR V 
Sbjct: 186 ENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVH 245

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           + + GG L IEW   ++HV MTG A  E+EG+ D
Sbjct: 246 ITLPGGELGIEWRASDDHVLMTGPAAFEFEGRFD 279


>gi|77163849|ref|YP_342374.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707]
 gi|254435289|ref|ZP_05048796.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27]
 gi|123595094|sp|Q3JEA2|DAPF_NITOC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76882163|gb|ABA56844.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707]
 gi|207088400|gb|EDZ65672.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27]
          Length = 276

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  +VID      ++T+  +  ++        DQ++L+      ++D   
Sbjct: 3   IAFTKMQGLGNDFVVIDALSQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC  RF+  +    +     +T  GI+  +   DG I+VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFARFVREQGLTDKNVLRVQTASGIIELQLETDGQITVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     +         G    +       VSMGNPH +  V   +    +A 
Sbjct: 123 PRFAPHQIPFKVDQEADYYSLELDGQQVEIG-----AVSMGNPHCVLRVPA-VDTAPVAH 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G LL  HP F + VN+  A++ S   L LR +ERG G T ACG+ ACA+ V        
Sbjct: 177 WGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIGKRRGWL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +  V+V + GG L I W  +   V+M+G A+  ++G +++
Sbjct: 237 SGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276


>gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
 gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
          Length = 277

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  +V+D        +    A            D I+++     A  DA 
Sbjct: 1   MHFVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCDRHFGIGADGIIIVLPSDIA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSIS 117
           +RI+N DGSE + CGNG+RC  +++      K      ET+ GI+  +     +    + 
Sbjct: 59  MRIVNADGSEAEMCGNGIRCFAKYVYESGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P  +   IP      ++      +    +        +SMG PH + FV+ D+  
Sbjct: 119 VDMGKPDFEPGAIPAFMPGTRIVERPLEVDSQPYAITS----MSMGVPHTVIFVD-DVDE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G  + KHP+F +  N++   V +   + +RTWERG G T ACG+ +CAS VA+ 
Sbjct: 174 VDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASAVAAA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +T RAV+V ++ G L I W +++ VFMTG A K ++G ++
Sbjct: 234 ITGRTGRAVTVHLIAGQLEIRWAEDDTVFMTGPAAKVFQGDIE 276


>gi|85704066|ref|ZP_01035169.1| diaminopimelate epimerase [Roseovarius sp. 217]
 gi|85671386|gb|EAQ26244.1| diaminopimelate epimerase [Roseovarius sp. 217]
          Length = 277

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 137/275 (49%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T   I A++       FDQ+ +I        DA +
Sbjct: 9   LPFFKMHGLGNDFVVLDGRARDLGLTPGLIMAIADRHRGIGFDQLAVI---TQGMGDAHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ R+L     +      T RG LVA +   G  SV+MG+P 
Sbjct: 66  TFYNADGSTSAACGNATRCIARYLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA + D ++                P    MGNPH  FFV  D     LA FG
Sbjct: 126 LDWAEIPLAEAMDTLEL----------PIEGGPVATGMGNPHCTFFV-ADAEAVPLAQFG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +A V   + + +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG + ++W ++  V+MTGE      G L
Sbjct: 235 RVRIDLDGGTIHVDWREDG-VWMTGETAHVASGVL 268


>gi|226946777|ref|YP_002801850.1| diaminopimelate epimerase [Azotobacter vinelandii DJ]
 gi|259595050|sp|C1DJ56|DAPF_AZOVD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226721704|gb|ACO80875.1| diaminopimelate epimerase [Azotobacter vinelandii DJ]
          Length = 276

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+   H +I    A           FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVIDLVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++      DG + VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTVKKRIRVETRSGVIELDVRPDGQVCVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L+ + IP       +D      G    L       +SMGNPHA+  VE ++    + 
Sbjct: 122 PPRLEPREIPFQAENAALDYQVEVDGCEVELA-----ALSMGNPHAVLRVE-NVESAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  V V + GG L I W   +  V MTG A + +EG++ +
Sbjct: 236 MDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276


>gi|87121332|ref|ZP_01077222.1| diaminopimelate epimerase [Marinomonas sp. MED121]
 gi|86163489|gb|EAQ64764.1| diaminopimelate epimerase [Marinomonas sp. MED121]
          Length = 269

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 130/275 (47%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D          D I  L        FDQ++++    +  +D   RI NC
Sbjct: 1   MHGLGNDFVVVDAVSRKVYFNKDMIARLGDRHTGIGFDQLLVVEPPTNPDMDFRYRIFNC 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DG+EV+ CGNG RC   F+  +  +       ET  G +  +   +G ++VDMG P  + 
Sbjct: 61  DGTEVEHCGNGARCFATFVQDKELISNDIINVETKNGPIQLRVLANGQVTVDMGVPSFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P   + +    D    G            VS+GNPHA+  V+ +L    +   G  +
Sbjct: 121 ADLPFTGTANGAFYDIPVAG-----ESYPITPVSVGNPHAVHKVD-ELSDEYVERIGEAI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H +F   VN+   ++ S   ++LR +ERGVG T ACG+  CA+VVA          V 
Sbjct: 175 ESHDLFPNNVNVGFMQLVSDSEINLRVYERGVGETQACGTGTCAAVVAGIKQGWLAAKVK 234

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +LGG L IEW  +   + MTG   K +EG++ +
Sbjct: 235 ANLLGGELTIEWQGEGQPILMTGPTAKVFEGQIYL 269


>gi|254690073|ref|ZP_05153327.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|256258326|ref|ZP_05463862.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|260755611|ref|ZP_05867959.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|260884637|ref|ZP_05896251.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|297247173|ref|ZP_06930891.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196]
 gi|260675719|gb|EEX62540.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870]
 gi|260874165|gb|EEX81234.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68]
 gi|297174342|gb|EFH33689.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196]
          Length = 303

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 146/285 (51%), Positives = 194/285 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FA+M G+GN+I+V DMRG  D+ITS A   L++D  T FDQIM IHD +    D +I II
Sbjct: 7   FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R +FTFET  GIL A E+ DG ISVDMG P  DW
Sbjct: 67  NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA++     +    +GP +   L +P + SMGNPHA+F+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V + GG LLIEW D++HV  TG A+ E+ G  D  TG+W +  + 
Sbjct: 247 VNVPGGPLLIEWRDDDHVMKTGPAEWEFSGTFDPATGEWSRDTQG 291


>gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21]
 gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21]
          Length = 278

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       +  + AI   + +     D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +               + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKNEITAETGAGILTLQLFTGAGGKVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L  K IP+    ++   +       +     N    SMGNPH + FV+ D+  
Sbjct: 119 VNMGPPRLTRKEIPMLGEPEERVVNVPLNVLHSS---FNITCASMGNPHCVIFVD-DVDS 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +  +G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A  
Sbjct: 175 FQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAACV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               T + +   + GG L +EW ++ +++MTG A + + G++ +
Sbjct: 235 LNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFSGEIGL 278


>gi|49083432|gb|AAT51031.1| PA5278 [synthetic construct]
          Length = 277

 Score =  215 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    +      +    FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP     + +  +    G    L       VSMGNPH +  VE ++    + 
Sbjct: 122 PPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVE-NVDSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA      
Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|15600471|ref|NP_253965.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAO1]
 gi|218894381|ref|YP_002443251.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58]
 gi|254238025|ref|ZP_04931348.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719]
 gi|254243835|ref|ZP_04937157.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192]
 gi|12230928|sp|Q51564|DAPF_PSEAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724215|sp|B7V5G9|DAPF_PSEA8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|9951591|gb|AAG08663.1|AE004940_7 diaminopimelate epimerase [Pseudomonas aeruginosa PAO1]
 gi|126169956|gb|EAZ55467.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719]
 gi|126197213|gb|EAZ61276.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192]
 gi|218774610|emb|CAW30427.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58]
          Length = 276

 Score =  215 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    +      +    FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP     + +  +    G    L       VSMGNPH +  VE ++    + 
Sbjct: 122 PPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVE-NVDSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA      
Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|33520022|ref|NP_878854.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus]
 gi|81666875|sp|Q7VRM5|DAPF_BLOFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|33504368|emb|CAD83261.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus]
          Length = 276

 Score =  215 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  ++ID         SD I +LS       FDQ++++    D ++D   
Sbjct: 1   MRFSKMHGLGNDFVIIDSITQKVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHC 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG+RCV RF+  +    ++     T    ++        ISV+MGE
Sbjct: 61  RIYNADGSEVYQCGNGIRCVARFVCIKKLTNKQHIKISTDTYSMMLSVLDSEFISVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP   +  +     F        F     VVS+GNPH +  VE  +    +  
Sbjct: 121 PIFDPIKIPFFSTQYQKMYVLFVPN-----FTILCGVVSIGNPHCVILVEQ-VDLVPVTV 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G++L  H  F +  N+S  ++ S  ++ LR +ERG G T ACGSAACA+V         
Sbjct: 175 LGSILENHHCFPKKANISFMQIISQNNIKLRVYERGSGETKACGSAACAAVAIGIQQGLL 234

Query: 243 NRA--VSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            +   V V + GG L I W      ++M G A   ++G +++
Sbjct: 235 KKNISVQVNLPGGDLFISWKGLGYPLYMIGSATYIYDGCINL 276


>gi|74318544|ref|YP_316284.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259]
 gi|74058039|gb|AAZ98479.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259]
          Length = 288

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 131/280 (46%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V D       +T +    ++        DQI+++       VD   
Sbjct: 14  LRFTKMHGLGNDFVVFDGVNQTVTLTPERCRRIADRHFGVGCDQILVVEKPTRPDVDFRY 73

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+       + +   ET  G++  +   DG ++VDMG 
Sbjct: 74  RIFNADGGEVEQCGNGARCFVRFVHDHGLTDKTAIRVETASGVIEPRLLADGRVTVDMGA 133

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      +P     +                  +  VVSMGNPHA+  V +DL    +  
Sbjct: 134 PRFAPAEVPFVAEAEA-----LTYPLKIGQHRLDIAVVSMGNPHAVLRV-NDLDSAPVDI 187

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++  H  F + VN    +V +   + LR +ERG G T ACG+ ACA+ V+       
Sbjct: 188 LGAVIESHSRFPQRVNAGFMQVLTPHDIRLRVFERGAGETLACGTGACAAAVSGIRQGAL 247

Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
              VSV   GG L+IEW      V MTG A+  +EG+L++
Sbjct: 248 ASPVSVHTRGGDLVIEWAGAGAPVLMTGPAETVFEGELEL 287


>gi|84503501|ref|ZP_01001556.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597]
 gi|84388179|gb|EAQ01132.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597]
          Length = 289

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 142/275 (51%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +++D RG     T     A+        FDQ+  I D +  + D  +
Sbjct: 21  LPFRKMHGAGNDFVILDSRGMAPVCTPGLARAVGDRHRGVGFDQLAEIRDGE--NCDIAL 78

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV     +   +   T  T RG+L  +  R  ++ V+MG P+
Sbjct: 79  DFWNSDGSRAGACGNATRCVAAEWMTETGQDRVTIRTTRGVLRGEM-RGEAVWVNMGPPV 137

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLAR  D +                +P  V MGNPHA+FFVE D+   D+A+ G
Sbjct: 138 LDWAQVPLAREVDLLHL----------PIAGDPCGVGMGNPHAVFFVE-DIDAVDVAARG 186

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +   P++ E  N+   +V S + + +R WERG G+T ACGS ACA  VA+     T R
Sbjct: 187 AEVEHDPLYPEATNVEFVQVRSHDEVRMRVWERGTGITLACGSGACAVAVAAHRRGLTGR 246

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V +++ GG L ++W D+  V+MTG   + +EG+L
Sbjct: 247 HVRIEVDGGWLELDWRDDG-VWMTGPVARVFEGRL 280


>gi|330827983|ref|YP_004390935.1| diaminopimelate epimerase [Aeromonas veronii B565]
 gi|328803119|gb|AEB48318.1| Diaminopimelate epimerase [Aeromonas veronii B565]
          Length = 276

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++DF+KM G+GN  +V+D        ++D I  L+       FDQ++L+    D  +D  
Sbjct: 2   LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +           T RG +V +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IP      +  +                 VVSMGNPH +  V   +    + 
Sbjct: 122 VPQFEPGKIPF-----RAQKAEKTYLLRAQEHTVMCGVVSMGNPHCVIEV-PSVADAPVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++ +H  F E VN+    + +   + LR +ERG G T ACG+ ACA+ V      K
Sbjct: 176 TLGAIMERHERFPERVNVGFMEMVNATEIKLRVFERGCGETLACGTGACAAAVIGISQGK 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 236 LKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEV 276


>gi|75676960|ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255]
 gi|74421830|gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255]
          Length = 297

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 123/275 (44%), Positives = 170/275 (61%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +T+    A+++     +DQ+M++   +    +AF+RI 
Sbjct: 16  FSKMNGIGNEIVVVDLRDNPATVTAGEARAVASPGGVPYDQLMVLQPPRTPGTEAFVRIY 75

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L        G  SVDMG P   
Sbjct: 76  NNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSAPGLYSVDMGSPKFG 135

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           WK IPLA  F         +GP++   L +P VVSMGNPHAIF+V+ D++ YDLA FG L
Sbjct: 136 WKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD-DIHAYDLARFGPL 194

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +  R V
Sbjct: 195 LENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRVERIV 254

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 255 HMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFD 289


>gi|145300548|ref|YP_001143389.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166224238|sp|A4SRW9|DAPF_AERS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|142853320|gb|ABO91641.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 276

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++DF+KM G+GN  +V+D        ++D I  L+       FDQ++L+    D  +D  
Sbjct: 2   LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +           T RG +  +   +  ++V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRISLQLEGENQVTVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   IP      +  +                 VVSMGNPH +  V   +    + 
Sbjct: 122 VPQFEPGKIPF-----RAQKAEKTYLLRAQEHTVMCGVVSMGNPHCVIEV-PSVADAPVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G ++ +H  F E VN+    + +   + LR +ERGVG T ACG+ ACA+ V      K
Sbjct: 176 TLGAIMERHERFPERVNVGFMEMVNATEIRLRVFERGVGETLACGTGACAAAVIGISQGK 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V+V + GG L I W      V+MTG A+  ++G++++
Sbjct: 236 LKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276


>gi|313106694|ref|ZP_07792912.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016]
 gi|310879414|gb|EFQ38008.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016]
          Length = 276

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    +      +    FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP         R+        +  L     VSMGNPH +  VE ++    + 
Sbjct: 122 PPRLAPAEIPFQAE-----REALSYEIEVNGQLVELAAVSMGNPHGVLRVE-NVDSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA      
Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|255009607|ref|ZP_05281733.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
 gi|313147388|ref|ZP_07809581.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
 gi|313136155|gb|EFR53515.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12]
          Length = 269

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 21/285 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++       N    AI   +       D ++LI     A  D
Sbjct: 2   TRTIQFTKMHGAGNDYIYVNTLRFPIRNPGKTAIEWSACHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+    +      +   T ET+ GI V K + +      
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNIITLETLSGIKVLKLHLEAQTVK- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D            ++ F      VSMGNPH + FV+ D+   D
Sbjct: 119 -------------AVTVDMGVPLETGTIDFDNKFPFVSTQVSMGNPHLVTFVD-DIRSID 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L +HP+F +  N+  A++T    + +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPKLERHPLFPDRTNVEFAQITGENKIRMRVWERGSGITQACGTGACATAVAAHLT 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            +T R V + M GG L I+W +  NHV+MTG A K ++G ++++ 
Sbjct: 225 GRTGRTVDIVMDGGTLTIKWDEATNHVYMTGPAVKVFDGTIELRE 269


>gi|260464163|ref|ZP_05812356.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075]
 gi|259029966|gb|EEW31249.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075]
          Length = 294

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 150/292 (51%), Positives = 194/292 (66%), Gaps = 2/292 (0%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M S+   FAKM GIGN+I+V DMRG  D +T+ A   L+ D  T FDQIM IHD +    
Sbjct: 1   MASTT-PFAKMNGIGNEIIVADMRGRADRVTAAAAITLNADAATGFDQIMAIHDARTPGT 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             FI I+N DG+  Q+CGNGMRCVV+ L +   +KSFTFET+ GIL A E+ DGSISVDM
Sbjct: 60  AFFIDILNSDGTGAQACGNGMRCVVQALAAETGQKSFTFETVAGILNASEHADGSISVDM 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P   W+ IPLA  F         IGP++   L +P  VSMGNPHAIF+V+ D++ Y+L
Sbjct: 120 GMPRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYEL 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             FG LL  HP+F E  N++IA+VTS ES+ +RTWERG GLT ACG+A+CA+VVA+    
Sbjct: 180 DRFGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGTASCAAVVAAARTR 239

Query: 241 KTNRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           +T R+VS+    GG L +EW D++HV +TG A+ E+ G  D  TG W +  E
Sbjct: 240 RTGRSVSLLTPGGGTLHVEWRDDDHVILTGAAEWEFSGSFDPSTGAWARDTE 291


>gi|85711582|ref|ZP_01042640.1| Diaminopimelate epimerase [Idiomarina baltica OS145]
 gi|85694734|gb|EAQ32674.1| Diaminopimelate epimerase [Idiomarina baltica OS145]
          Length = 275

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN  +VID    +  +  + I           FDQ++L+    D  +D  
Sbjct: 2   LLQFSKMHGLGNDFVVIDNVTQNFYVNPEQIKQWADRHRGIGFDQLLLVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  +F+ ++    +      T  G +V    +DG ++V+MG
Sbjct: 62  YRIFNADGSEVAQCGNGARCFAKFVKAKGLSNKNHLKVSTKAGTMVLHIEKDGQVTVEMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP+ +   +P         +                 V+ +GNPH +   + D+    +A
Sbjct: 122 EPMFEPASVPFKA-----QKPEHTYVLRVADETVLCGVMGLGNPHCVIETD-DVNTAPVA 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  +A+H  F E VN+   ++ S + + LR +ERGVG T ACGS ACA+ V      K
Sbjct: 176 SLGEKIAQHERFPESVNVGFMQIVSRQQIKLRVFERGVGETQACGSGACAAAVIGMQQDK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             R V V + GG L I W     V MTG A   ++G++ I
Sbjct: 236 LERQVKVTLPGGELTIRWQAGQSVKMTGPATLIFDGQMVI 275


>gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
 gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
          Length = 283

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM GIGN  + +D         +     +S        D +++I   + A  D  +
Sbjct: 3   INFTKMHGIGNDYVYVDGFKQTLKDPNAFSEFISDRHFGIGSDGLVIILPSEIA--DFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG----SISV 118
           R+ N DGSE + CGN  RC+ +F+       +K+ + ET+ GI       +      + V
Sbjct: 61  RMFNADGSEGKMCGNATRCIGKFVYETGYTDKKNISLETLSGIKYLTLTVEDGKVVYVEV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ IL  + IP+    +        I       +     VSMGNPH + + E D+   
Sbjct: 121 DMGKAILSPQDIPVISDQETFINTPISIDN----EIYYGTCVSMGNPHVVVYCE-DVDLL 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L S G     +P+F E +N    ++    ++ +R WERG G T ACG+ ACA  V+   
Sbjct: 176 SLESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACAVAVSCVL 235

Query: 239 LH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               K N  ++VK+ GG L I + ++  V M G A K ++G ++
Sbjct: 236 NGYCKINEEITVKLRGGDLKITYKEDGTVLMKGPATKVFDGTIE 279


>gi|83592519|ref|YP_426271.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170]
 gi|83575433|gb|ABC21984.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170]
          Length = 280

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 108/289 (37%), Positives = 149/289 (51%), Gaps = 13/289 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M      F KM G+GN  +VID R    ++T + + AL+        DQ + I   +   
Sbjct: 1   MSIRGTHFLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGG 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           V AF+ + N DG  V+SCGN  RCV R L    + +S   ET+ G++ A+      I VD
Sbjct: 61  V-AFMGLRNADGEIVESCGNASRCVGRLLLEEREAESVLIETLGGMVEARRASGELIEVD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG   L W+ IPLA + D +  +       +   L +P  VSMGNPHA+FFV+ D    D
Sbjct: 120 MGPARLTWQEIPLAGAADTLHIEL------SVGPLSDPCAVSMGNPHAVFFVD-DADAID 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA++G L+  H +F    N+    + +   L +R WERGVG+T ACG+ ACAS VA+   
Sbjct: 173 LATWGPLIEHHGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRR 232

Query: 240 HKT-NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286
                R   V + GG L I W + + HV MTG A   + G LD   G W
Sbjct: 233 GLIAGRTAEVVLDGGTLGIVWRESDGHVLMTGSATLAYSGVLD--EGAW 279


>gi|227325796|ref|ZP_03829820.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 259

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 84/261 (32%), Positives = 124/261 (47%), Gaps = 9/261 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P            + +    H  L    VVSMGNPH +  VE D+    + +
Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E  N+   ++    ++ LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNN 263
           +  V V + GG L I+W   +
Sbjct: 235 SANVRVSLPGGELDIQWDGRD 255


>gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
 gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710341|gb|EDS20920.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
 gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2]
 gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 283

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 130/285 (45%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      N  +     +S        D ++ I     A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNCLEEKINNPNKVAKFISDRHFGIGSDGMICICPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGSE   CGNG+RC+ +++         T        +       ++ +   + V
Sbjct: 59  AMYNSDGSEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVKV 118

Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DM  PI     IP +    D++      +    +    N   +SMGNPH + FV+  +  
Sbjct: 119 DMEAPITKASQIPAIYDDLDEVIDQPVIVDGKEY----NITCISMGNPHGVVFVD-SVAD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     HPMF + VN     +   +++ +R WERG G T ACG+ ACAS  AS 
Sbjct: 174 IDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACASAYASY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
              KT + V V +LGG L IE+  + + +FMTG A   ++G++D+
Sbjct: 234 LNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278


>gi|107104379|ref|ZP_01368297.1| hypothetical protein PaerPA_01005455 [Pseudomonas aeruginosa PACS2]
 gi|116053427|ref|YP_793752.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152986770|ref|YP_001351337.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7]
 gi|296392136|ref|ZP_06881611.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAb1]
 gi|122256554|sp|Q02E84|DAPF_PSEAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225743|sp|A6VE52|DAPF_PSEA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115588648|gb|ABJ14663.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150961928|gb|ABR83953.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7]
          Length = 276

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    +      +    FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +KS   ET  GI+      DG ++VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP     + +  +    G    L       VSMGNPH +  VE ++    + 
Sbjct: 122 PPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVE-NVDSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ VA      
Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|312114979|ref|YP_004012575.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220108|gb|ADP71476.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100]
          Length = 291

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 111/281 (39%), Positives = 165/281 (58%), Gaps = 5/281 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN   V+D R     +T+D  +A++        DQ++++     A  D F+
Sbjct: 6   ISFKKMNGLGNDFAVLDARANDFQLTADEASAIANRETGVGCDQVIVLEPSSRA--DVFM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI+N DGSEV +CGN  RCV   + + + R+  T ET  G+L A+ + DG ++VDMG P 
Sbjct: 64  RILNADGSEVGACGNASRCVGALVAAELGRERVTIETAAGVLDARISGDGLVTVDMGVPR 123

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W+ IPLA+           I   +   L  P V ++GNPHAIF+V  D+  YDLA+FG
Sbjct: 124 FGWRDIPLAKEEPDTRAISLAITLPDGRVLEGPSVANVGNPHAIFWV-ADVDAYDLATFG 182

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L   P+F E  N+S+A V   +++ LR WERG G+T ACG+AACA+ V++    +T R
Sbjct: 183 GALEYDPIFPERANISLAEVIDDQTVKLRVWERGAGITQACGTAACATAVSAARTGRTGR 242

Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284
           +V +++ GG + IEW  D++H+ MTG    E+EG L +  G
Sbjct: 243 SVEIRLPGGVIGIEWRADDDHILMTGPVAHEFEGTLTLSGG 283


>gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
 gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
 gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
 gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
 gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 274

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+ R    + +  AI           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEAREN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R   K      ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FV+  L    
Sbjct: 118 MGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVK-SLDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V   GG LL+EW D+N ++++G  ++ + G++++
Sbjct: 233 GKTERNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 274


>gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166]
          Length = 276

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+   H +I    A           FDQ++++   Q+  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I VDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP     + +       G    L       VSMGNPHA+  V+  +    + 
Sbjct: 122 PPRLVPAEIPFQAEREALSYSLEVDGQQVELA-----AVSMGNPHAVLRVD-SVERAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  V +++ GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276


>gi|148555836|ref|YP_001263418.1| diaminopimelate epimerase [Sphingomonas wittichii RW1]
 gi|166225760|sp|A5VAG4|DAPF_SPHWW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148501026|gb|ABQ69280.1| diaminopimelate epimerase [Sphingomonas wittichii RW1]
          Length = 274

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 17/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAF 63
           V F KM G+GN  +VID R      +T+    AL+        DQ++L+     A  DA 
Sbjct: 3   VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPS--AVADAR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGSEV++CGN  RCVV  L           ET+ G+L  + + DG +SV++GEP
Sbjct: 61  MRIFNADGSEVEACGNATRCVVSLLGGSA-----RIETVAGLLEGR-SADGQVSVELGEP 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             DW  IPLA + D          PV    L  P   ++GNPH +FFV  +     L   
Sbjct: 115 RFDWDAIPLAYAMDTR------AMPVAWEELEAPMAANVGNPHVVFFV-PETDAVALDRL 167

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +   P+F   +N+++A V    ++ LR WERGVGLT ACG+ ACA+ V++      +
Sbjct: 168 GPRIETDPLFPARINVNVATVDDRANIRLRVWERGVGLTDACGTGACATAVSAIRAGLVD 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
             V V + GG L I+W     + MTG A   +  + D+  
Sbjct: 228 SPVRVTLPGGPLTIDWAPGRPIVMTGPATHVFTAETDLSA 267


>gi|160878788|ref|YP_001557756.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg]
 gi|160427454|gb|ABX41017.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg]
          Length = 304

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 18/292 (6%)

Query: 1   MQSSM---VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQ 56
           +Q  M   + F KM+G GN  + ++      N     A            D ++LI   +
Sbjct: 20  LQKGMVANMKFTKMQGCGNDYVYVNCFEETINDPNGVAKKVSDRRFGIGSDGLILIKPSE 79

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDG 114
            A  D  + + N DGS+ + CGNG+RCV +++      +  +   ET+ G+       DG
Sbjct: 80  IA--DFTMHMYNADGSQGKMCGNGIRCVGKYVYDHGMTQKTSLAIETLGGVKYLALIVDG 137

Query: 115 ----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                ++VDMGEP LD KLIP+A   +++      I             VS+GNPHA+ F
Sbjct: 138 GKVTEVTVDMGEPELDPKLIPIAVEEEQVVNMPITIADREFYITG----VSVGNPHAVTF 193

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +E D   + + ++G L  +HP+F E +N    ++   +++++R WERG   T ACG+ A 
Sbjct: 194 IE-DTNSFPIENYGPLFEEHPLFPEKINTEFVQILDRKTVNMRVWERGSAETHACGTGAT 252

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            SV A+     T   V+V MLGG ++I +  + N +FMTG A   ++G++++
Sbjct: 253 CSVYAAILNGLTEDEVTVHMLGGDVVIRYDREKNRLFMTGPAVTVFDGEIEL 304


>gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5]
          Length = 284

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 17/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++         +     +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFEETVKDPAAVAKFVSDRHFGIGSDGLILIRPSEIA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGS+   CGNG+RCV +++         +        +       ++ +   + V
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYVYDHGIVDKTSLSIATRSGIKYVDLTIRDGKASMVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL  K IP+    +++      +    +        VSMGNPHAI +V+ D+   
Sbjct: 119 NMGSPILTAKEIPVVAETEQVIDAPITVDGKEYHM----TAVSMGNPHAIIYVD-DVNSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H  F + VN    +V    ++ +R WERG G T ACG+ ACA  VAS  
Sbjct: 174 DLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGACAVTVASIL 233

Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
             K +  + V+V++LGG L I W  + + V+MTG A   ++G++D+
Sbjct: 234 NDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279


>gi|160017028|sp|A2ZLS4|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic;
           Short=DAP epimerase; Flags: Precursor
 gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group]
          Length = 357

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/288 (30%), Positives = 127/288 (44%), Gaps = 13/288 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A      +     D ++ +    +  
Sbjct: 69  SERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-G 127

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  RF+    +     SF   T  G+++ +   DG +
Sbjct: 128 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKV 187

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            VDMG+PIL    IP        +                   VSMGNPH + F   +  
Sbjct: 188 KVDMGQPILSGPDIPTKLPS-TKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELK 246

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
              +    L+  G     H MF    N     V S   L +R WERG G T ACG+ ACA
Sbjct: 247 VLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 306

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
            VVA+    +  R   V + GG L IEW + +NH++MTG A+  + G 
Sbjct: 307 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354


>gi|322384337|ref|ZP_08058035.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321150839|gb|EFX44276.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 280

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 152/286 (53%), Gaps = 18/286 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M++  KM G+GN  +V+         ++  AI   +       D ++ I   ++A  D  
Sbjct: 1   MMNITKMNGLGNDFIVVSGEKQLPAGVSDLAIRLCNRHFGIGADGLVYILPSKEA--DFM 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI---------RGILVAKENRDG 114
           +RIIN DGSE + CGN +RCV +++      +    E           R  +  K+ +  
Sbjct: 59  MRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGIQRVFVHKKDGKVD 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++ VDMGEPIL+   IP   + + + +    +      F      VSMGNPH + +V+D 
Sbjct: 119 TVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQF----TAVSMGNPHCVIYVDDA 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   +L  +G LL  HP+F + +N+  A V S + + +  WERG G T ACG+ ACA++V
Sbjct: 175 V-TMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMHVWERGAGPTLACGTGACATLV 233

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           AS   + T+R  ++ + GG L IEW++ +NHV+MTG A + ++G+L
Sbjct: 234 ASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRL 279


>gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 279

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +V+D +     +  + A+           D +M++   + A  D  +
Sbjct: 1   MEFTKWQGCGNDFVVVDFLAREPVDFAALAVRMCDRHFGVGADGLMVVLPSETA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118
           R  N DG+E + CGNG+RC     +   R+K++ FT ET+ GI+  +   +      + V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFARYLYEYGRIKKEQFTIETLAGIMTPRILIEDGKVTAVEV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L    IP+         +R    P+           VSMGNPHA+ FV+ D  H
Sbjct: 119 DMGVPVLTGDDIPV----RGFGTERVIAAPITVAGRTYKMTCVSMGNPHAVIFVD-DAEH 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + LA  G     H +F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                +RA  +++ GG + +EW ++ H+FMTG A+  + G  
Sbjct: 234 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGVW 275


>gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
          Length = 285

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++       N ++ A            D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPSDIA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-------AKENRDGSIS 117
            + N DGS+   CGNG+RCV ++          +        +        K+ +   + 
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTSISVATKSGIKYLDLTLGKDGKVALVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG PIL  + IP+  + +++  +  H+    +        VSMGNPHAI +++  L +
Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVINEPLHVDGETYHI----TAVSMGNPHAIVYMDA-LKN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     H  F + +N    +V    +L +R WERG G T ACG+ ACA  VAS 
Sbjct: 174 LDIEKLGPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
                  ++ V+VK+LGG L I W+   + V+MTG A   ++G++D+ + +
Sbjct: 234 LNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIDVSSLE 284


>gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 277

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++         S+    +S        D +++I+    A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDRHYGVGSDGLIMINPSDKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      + S + ET+ GI       ++ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P+L  + +P+    +++  +   +    +        VSMGNPHA+ F++ D+  +
Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRM----TCVSMGNPHAVVFIDQDVKEF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G     H  F + VN     V    +  +R WERG G T ACG+ ACA  VA   
Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              T   V+VK+LGG L I+W  + N V+MTG A+  ++G+  
Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGEWK 277


>gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
 gi|29839316|sp|Q8DGM2|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
          Length = 286

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 17/287 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  L+ID R   + + T +              D ++ +        D  
Sbjct: 3   LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGT-GESDYR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSISV 118
           +R+ N DGS  Q CGNG+RC+ +F+ +   R       +  +T+ G++V +   DG ++V
Sbjct: 62  MRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L  + IP   +    D+    +             VSMGNPH + FVE D+   
Sbjct: 122 DMGKPRLLAQQIPTTLAA--ADQKVVDVPLTVGDRQWLVTCVSMGNPHCVTFVE-DVAAL 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DLA  G     HP F +  N    +V   + L +R WERG G+T ACG+ ACA++VA+  
Sbjct: 179 DLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLVAAVL 238

Query: 239 LHKTNR-----AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
               +        +V++ GG L I W   + H++MTG A   + G L
Sbjct: 239 TGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285


>gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
 gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
          Length = 287

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +V+D       +  + A+           D +M++   + A  D  +
Sbjct: 9   MEFTKWQGCGNDFVVVDFLDREPVDFAALAVRMCDRHFGIGADGLMVVLPSETA--DIRM 66

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118
           R  N DG+E + CGNG+RC     +   R++++ FT ET+ GI+  +   +      + V
Sbjct: 67  REFNPDGTEPEMCGNGIRCFARYLYEYGRIEKEQFTIETLAGIMTPRILIEDGKVTAVEV 126

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L    IP+     +++      +    +        VSMGNPHA+ FV+ D  H
Sbjct: 127 DMGVPVLTGDDIPVRGFGTERVIAVPITVAGEEYKM----TCVSMGNPHAVIFVD-DAEH 181

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + LA  G     H +F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 182 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 241

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                +RA  +++ GG + +EW ++ H+FMTG A+  + G  
Sbjct: 242 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGVW 283


>gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470]
 gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470]
          Length = 283

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 131/286 (45%), Gaps = 11/286 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           MQ   + F K +  GN  + ++              ++         D I+ +   + A+
Sbjct: 4   MQEGFMHFTKWQACGNDFVFVNAMTMDIRPVVKKCVSICNRNFGIGADGIIFVLPSEKAT 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSIS 117
               +RI N DGSE + CGNG+R   ++        +  F+ ET  GIL  +   DG + 
Sbjct: 64  --LQMRIFNSDGSEAEMCGNGIRAFAKWAHELGLVSKHHFSVETGAGILFPELLPDGKVR 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+   IP+    D M  +R      N L       VSMGNPH + F + D+  
Sbjct: 122 VDMGVPHLNSSEIPVTGFGDGMVVNR---KLTNDLHTYRITCVSMGNPHCVIFTD-DIDR 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G+ L     F    N+  A++     L +R WERG G+T ACG+  CA+VVA+ 
Sbjct: 178 ISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGTCATVVAAI 237

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLDI 281
                     V + GG L I W  ++  HVFMTG A+K +EG+  I
Sbjct: 238 LNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283


>gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191]
 gi|229807517|sp|B2KDH2|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191]
          Length = 274

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/278 (33%), Positives = 140/278 (50%), Gaps = 8/278 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G+GN  ++ID      + + +              D ++ +     AS D  I
Sbjct: 1   MEFVKYQGLGNDFILIDCVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPS--ASADYKI 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGEP 123
           RIIN DG+E + CGNG+RC +RF+   +K  +  TFET+ G +  +   +  + VDMG P
Sbjct: 59  RIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTFETLAGPIKTELLAENLVKVDMGAP 118

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L    IPL  S          +             VSMGNPH + FVE D+   D+A  
Sbjct: 119 KLTAAQIPLNISDSDGRAVDIPVKLEGGKIKGTG--VSMGNPHFVIFVE-DIKKTDVAKT 175

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  +  F +  N+   +V +   L ++ WERGVG+T ACG+ ACAS+VA    +KT 
Sbjct: 176 GKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAGVLNNKTE 235

Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280
           R   V++ GG L +EW D+   VFMTG A + + G   
Sbjct: 236 RLALVELDGGQLTVEWPDDGASVFMTGPATEVFSGVFK 273


>gi|52425839|ref|YP_088976.1| diaminopimelate epimerase [Mannheimia succiniciproducens MBEL55E]
 gi|81609437|sp|Q65RL9|DAPF_MANSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52307891|gb|AAU38391.1| DapF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 274

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +     + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFVVVDAVTQNVYFPEEVIKKLADRHRGIGFDQMLIVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K     T  G ++     DG I V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVTLKGLTDKKDIAVSTTNGKMILTVQDDGMIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ +   IP        ++   +      +       VSMGNPH    V+ D+   ++  
Sbjct: 121 PVWEPAKIPF-----IANKFEKNYILRTDIQTVLCGAVSMGNPHCTLVVD-DVETANVTE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN+   +V +   + LR +ERG G T ACGS ACA+          
Sbjct: 175 LGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
              V V + GG L IEW    H ++MTG+A   ++G + +
Sbjct: 235 ENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274


>gi|262373158|ref|ZP_06066437.1| diaminopimelate epimerase [Acinetobacter junii SH205]
 gi|262313183|gb|EEY94268.1| diaminopimelate epimerase [Acinetobacter junii SH205]
          Length = 284

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 5/280 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+D+      + +  I  L+       FDQ++++        D   
Sbjct: 3   LEFTKMHGLGNDFMVVDLVTQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDADFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG+RC  RF+  R    +     +T  GI+  +   +G + V+MG 
Sbjct: 63  RIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      IP     +  D +  +   +      N  VV+MGNPHA+  V  D+   D+A 
Sbjct: 123 PKFLPAEIPFLTD-EHEDTEGLYKLGLADNKSINIDVVNMGNPHAVTIV-PDVLTADVAG 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  H  F   VN    ++   + + LR +ERGVG T ACG+ ACA+ V+       
Sbjct: 181 IGPQVESHARFPARVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W + + V+MTG     ++ +LD++
Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTTHVYDARLDLR 280


>gi|83953199|ref|ZP_00961921.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1]
 gi|83842167|gb|EAP81335.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1]
          Length = 302

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 143/306 (46%), Gaps = 41/306 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-------------------------NITSDAINALST 40
           + F KM G+GN  +V+D R                              +T     A+  
Sbjct: 9   LPFMKMHGLGNDFVVLDARQKDVLDAREKVVLDARQTDARADAPPALPKVTPALAQAIGH 68

Query: 41  D-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
                 FDQ+ +I    + + DA +   N DGS   +CGN  RC+ RFL     +     
Sbjct: 69  RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125

Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            T RG L A++  +G  SV+MG P L W  IPLAR  D ++                P  
Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLGWDEIPLARQMDTLEL----------PIDGAPTA 175

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
             MGNPH  FFV+ D+   DLA FG  +  H ++ E  N+ IA++   + + +R WERGV
Sbjct: 176 TGMGNPHCTFFVD-DVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G+T A GS++CA+ VA+     T RAV + + GG L I+W ++  V+MTG +   + G L
Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293

Query: 280 DIKTGK 285
                +
Sbjct: 294 TPSFLE 299


>gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
 gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
          Length = 388

 Score =  213 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 14/286 (4%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQD 57
           +++ F+K +G+GN  L++D R   D      +  + +  +         D ++L    + 
Sbjct: 7   AVLAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALPPE- 65

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDG 114
              +  +RI N DGSE + CGNG+RC+ RFL         +++  ET+ G +V +   DG
Sbjct: 66  GDGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLADG 125

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + VDMGEP L  + +P   +       +  +      F        MGNPH +  VE+ 
Sbjct: 126 MVRVDMGEPFLLPEQVPTTLATGPAGLPQGELEVEGARFAAAAA--GMGNPHLVIPVEE- 182

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL  FG LL +HP F    N+   +    + L +R WERG G T ACG+ ACA++V
Sbjct: 183 VEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATLV 242

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A   L  + R+  + + GG L I+W   +NH+FMTG A+  ++G L
Sbjct: 243 ACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDGVL 288


>gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425]
 gi|254767099|sp|B8HU20|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425]
          Length = 280

 Score =  213 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 131/282 (46%), Gaps = 12/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  ++ID R     +     A++          D ++ +        D  
Sbjct: 3   LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPAT-GETDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVAKENRDGSISV 118
           +RI N DGSE + CGNG+RC+ RF       +      +   T+ G +  +   DG ++V
Sbjct: 62  MRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P L    IP                        +   VSMGNPH I FVE ++   
Sbjct: 122 DMGQPRLLAGEIPTTLK--PAAEKVIAQPLQVGGRSWSVTCVSMGNPHCITFVE-NVAAI 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G     HP F + +N     V   + L +R WERG G+T ACG+ ACA++VA+  
Sbjct: 179 DLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGACAALVAAVL 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +    +V++ GG L IEW      V MTG A++ ++G L
Sbjct: 239 NDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQGVL 280


>gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
 gi|166225745|sp|A4VGW5|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
          Length = 276

 Score =  213 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +VID+   H +I    A           FDQ++++   Q+  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I VDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP     + +       G    L        SMGNPHA+  V+  +    + 
Sbjct: 122 PPRLVPAEIPFQAEREALSYSLEVDGQQVELA-----AASMGNPHAVLRVD-SVERAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  V +++ GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276


>gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453]
 gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453]
          Length = 278

 Score =  213 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 151/285 (52%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V+       N  S+    L         D ++ I   + A  D  +
Sbjct: 1   MEFTKMHGLGNDFVVVYGEQELPNDASERAVKLCHRFFGIGADGLVYILPSRKA--DFMM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RI+N DGSE + CGN +RCV    +    + R+  T ETI        L  ++ +  S+ 
Sbjct: 59  RIMNSDGSEAEQCGNAIRCVAKYVYDHGHINREEITIETIGAGVQQVRLTVQDGQVSSVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP+L+   +P     + +      +      F      VSMGNPH + +V+D +  
Sbjct: 119 VDMGEPVLNGLSVPTTIDLNPVVDHPVEVDGREFRF----TAVSMGNPHCVIYVDDAVN- 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F   +N+  A V S + +D+R WERG G T ACG+ ACA++V+S 
Sbjct: 174 FDLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACATLVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               T+R+ ++ + GG L IEW + +NHV+MTG A+  ++G L I
Sbjct: 234 LNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278


>gi|218261608|ref|ZP_03476354.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223922|gb|EEC96572.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii
           DSM 18315]
          Length = 274

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 14/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++       N    AI   +       D ++LI   + A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNAMAFPIRNPEKLAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGN  RC+ +++  +    +K+ T ET  GI   +             
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYVYDKRLTDKKNVTLETRSGIKELQLTTRKLSGSRE-- 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                ++I +             +      +     VVSMGNPH + FVE D+ + +L +
Sbjct: 121 -----EVIEVTVDMGCPVVGEAALEIEAGGYFYTGTVVSMGNPHLVIFVE-DIANINLPA 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F    N+   +V +++ + ++ WERG G+T ACG+ ACA+ VA     KT
Sbjct: 175 IGPLLECHPLFPNRTNVEFVQVLNMDEVRMKVWERGSGITQACGTGACATAVAGVIRRKT 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L I W + + HV+MTG A K +EG+L+I
Sbjct: 235 GRKTKVVMDGGPLTIRWDESSGHVYMTGGAVKVFEGELEI 274


>gi|154251868|ref|YP_001412692.1| diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1]
 gi|154155818|gb|ABS63035.1| Diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1]
          Length = 293

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 110/282 (39%), Positives = 156/282 (55%), Gaps = 8/282 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D+R     +T     A++        DQ++ I   +    D F+ 
Sbjct: 7   HFLKMNGLGNDFVVLDLRREPFVLTDAIARAIADREKGIGCDQLITIEPARQGG-DVFMG 65

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG  V++CGN  RC+ + +     + + T ET+ G  VA       I+VDMG P L
Sbjct: 66  IRNHDGGTVEACGNAARCIGKLILDETGKDAVTIETLAGDTVATRAEGDEITVDMGAPRL 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPL+  F         IGP+    + +P VV++GNPHA+FFVE D+   DL   G 
Sbjct: 126 DWNQIPLSEEFQDTRAIELEIGPLGAPIMHSPGVVNVGNPHAVFFVE-DVDAIDLERSGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+S+A+V S   + +RTWERG GLT ACG+AACA+ VA+    KT R 
Sbjct: 185 MLEHHPLFPERANISVAKVLSPTHIRIRTWERGAGLTRACGTAACAATVAAIRRRKTERK 244

Query: 246 VSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282
           ++V + GG L +EW  +      HV MTG    ++EG LD +
Sbjct: 245 ITVTLPGGDLTVEWLPDDENGYGHVLMTGPVAFDYEGTLDPR 286


>gi|114797495|ref|YP_762200.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444]
 gi|114737669|gb|ABI75794.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444]
          Length = 269

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/275 (38%), Positives = 157/275 (57%), Gaps = 7/275 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM G GN   + D R      T++ I  ++ D     DQ++ +   +DA+ D F+R
Sbjct: 1   MKLWKMNGAGNAFAIFDARSTAFTPTTEQIRKIAAD--LKADQVIAME--RDATKDVFMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGSEV +CGN  RCV   +     +   T +T   +L A    +G I+VDMG P +
Sbjct: 57  IWNSDGSEVSACGNATRCVGLLMLDETGKDRVTIQTEADMLRATRAGEGLITVDMGSPQM 116

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPL+   D    D   IGP++   L  P VVSMGNPHA+FFV+ D+  YD+ + G 
Sbjct: 117 GWEDIPLSEKMDVRGVD-VKIGPIDAPILSRPAVVSMGNPHAVFFVK-DVAAYDIPAIGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F +G N+  A+V   E++ LR WER  GLT ACG+ ACA++V +     T R 
Sbjct: 175 LVEWHPLFPKGTNVGFAQVIDRETIRLRVWERAAGLTRACGTGACAALVCAARAGLTGRK 234

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             + + GG L I+W + ++HV+MTG  + E+E ++
Sbjct: 235 ARMILDGGDLTIDWRESDDHVYMTGPVELEFEAEI 269


>gi|145590184|ref|YP_001156781.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048590|gb|ABP35217.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 284

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 15/285 (5%)

Query: 11  MEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V++        IT +   AL+        DQI+L+        D   RI N
Sbjct: 1   MHGAGNDFIVLNGIDQDLSEITREQWQALAHRQFGIGADQILLVEKATRPDADFRYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DG EV+ CGNG RC VRF+  +    +     E    +L  K + DG + VDMG PI D
Sbjct: 61  ADGGEVEQCGNGSRCFVRFVLDQGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFD 120

Query: 127 WKLIPLARSFD---KMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181
             LIP   +     +   +  +  P++     +  V  +SMGNPHA+  V  D+    + 
Sbjct: 121 HNLIPFNANGLASMQEFHEMLYALPIDLPATHDSLVGVLSMGNPHAVQVVG-DVDSAPVL 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ + +HP F   VN+   +V +   + LR +ERG G T ACG+ ACA VV+      
Sbjct: 180 EEGSAIERHPAFPNKVNVGYLQVLNRNEIKLRVYERGAGETLACGTGACAGVVSGIRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281
            +  V V   GG L I W        + V MTG A   +EG+ +I
Sbjct: 240 LDSPVKVHTRGGDLQIVWGGVIDEVAHPVIMTGPATTVFEGETEI 284


>gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681]
 gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus
           polymyxa E681]
          Length = 277

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 142/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V           +  A+           D ++ I   + A  D  +
Sbjct: 1   MEFTKMNGLGNDFIVWFGHQDLPSGASELAVRLCDRHFGVGADGLVYILPSEKA--DFCM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSIS 117
           RIIN DGSE + CGN +RC     +    + R+  T ET+        L  +      + 
Sbjct: 59  RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   IP      ++  +    G            VSMGNPH + +VE D   
Sbjct: 119 VDMGEPILEGLKIPTTLERTRVINEPIEAGGSGF----CFTAVSMGNPHCVIYVE-DAPS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HP+F +  N+  A V S + +D+R WERG G T ACG+ ACA++VAS 
Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
               ++R   V + GG L IEW  D+NH++MTG A+  +EG+L
Sbjct: 234 LNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRL 276


>gi|90408776|ref|ZP_01216921.1| diaminopimelate epimerase [Psychromonas sp. CNPT3]
 gi|90310120|gb|EAS38260.1| diaminopimelate epimerase [Psychromonas sp. CNPT3]
          Length = 275

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 97/279 (34%), Positives = 144/279 (51%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+G+GN  +VID       ++  AI  L+       FDQ++L+    D  +D   
Sbjct: 3   IQFSKMQGLGNDFMVIDNITQSVFLSKTAIQRLADRNFGIGFDQLLLVEPPYDPELDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +   +++     T +G +  K  +DG+I+VDMG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKLKGLTQKRVINVSTAKGKIQLKIEQDGNITVDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI D   IP     +      + +    H  +    VVSMGNPH +  V+ D+    + +
Sbjct: 123 PIFDPHKIPFVAKKE---EKTYILRVQEHTVICG--VVSMGNPHCVVLVD-DIDSAPVDT 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F   VN+S   + S +   LR WERGVG T ACG+ ACA+ V      K 
Sbjct: 177 LGPLLENHERFPNKVNVSFLEIKSPDYAKLRVWERGVGETLACGTGACAAAVIGQLQGKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               ++++ GG L   W     V MTG A+  ++G++ I
Sbjct: 237 ATHCTIELPGGKLKFFWQMGQSVRMTGAAEFVFDGQIQI 275


>gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
 gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
          Length = 366

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 17/300 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R         +     ++ +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI+N DGSE + CGNG+RC+ R+          + +  ET+ G++  +   D  
Sbjct: 60  EGELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L  + IP     +        +     + + +   V MGNPH +  V+ DL
Sbjct: 120 LRVDMGPPFLTPEAIPTTVMPEDGLPQGVLLLEDEQIRVAS---VGMGNPHVVVPVD-DL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L  HP F    N+   +V S E L++R WERG G T ACG+ ACA++VA
Sbjct: 176 ASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL--DIKTGKWIKKNED 292
           +  L   +    V + GG L+IEW D +  V MTG A+  ++G +  ++ +G +  + +D
Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDGVMTPELMSGLFAVEPQD 295


>gi|56461655|ref|YP_156936.1| diaminopimelate epimerase [Idiomarina loihiensis L2TR]
 gi|81599935|sp|Q5QUS6|DAPF_IDILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56180665|gb|AAV83387.1| Diaminopimelate epimerase [Idiomarina loihiensis L2TR]
          Length = 275

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F+KM G+GN  +V+D    +  +  D I           FDQ++L+    D  +D  
Sbjct: 2   LLHFSKMHGLGNDFMVVDNVTQNLYVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFH 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  +F+ ++    +      T  G +V    +DG ++VDMG
Sbjct: 62  YRIFNADGSEVAQCGNGARCFAKFVKAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP+ +   +P         +                 V+ +GNPH +  V+ ++    + 
Sbjct: 122 EPLFEPAAVPFKA-----QKAEQTYVLRVKEETVLCGVLGLGNPHCVIAVD-NVDTTPVE 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  LA H  F E VN+   +  S + + LR +ERGVG T ACGS ACA+ VA      
Sbjct: 176 TLGAALAAHERFPESVNVGFMQKVSADEIKLRVFERGVGETRACGSGACAAAVAGIQQGL 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            N  V V + GG L+I W     V MTG A+  ++G++
Sbjct: 236 LNERVKVSLPGGDLIIRWQQGQPVKMTGPAELVYDGQM 273


>gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 278

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +  S A            D ++L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117
           RIIN DGSE + CGNG+RC  +++  R   K   F  ET+ GI+  +   +       + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    D    D  +              + MG PH + FV+ D+  
Sbjct: 119 VNMGKPSFKRKDIPMQGEPD---SDAINTSIEVDGKEYKITSLLMGVPHTVLFVD-DVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + +H +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS 
Sbjct: 175 VDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIASN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L IEW ++  VFMTG A++ + G+
Sbjct: 235 LNGYTERKANVHLYFGTLEIEWQEDGTVFMTGPAEEVFVGE 275


>gi|77920664|ref|YP_358479.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
 gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
          Length = 279

 Score =  212 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 14/285 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + FAKM G GN  + ++      +  ++    +S        D ++LI   + A  D  +
Sbjct: 1   MKFAKMHGAGNDYVYVNCFEQTIDDPAEMARKVSNRNFGIGSDGLILILPSEVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117
           R+ N DGSE + CGNG+RCV ++       +        G  +          ++   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAYDHGLVEKKEITAETGAGILTLQLFTNDRDKVERVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P L    IP+  S +       +          +   VSMGNPH I FV+ ++  
Sbjct: 119 VNMGKPRLTRGEIPMTGSPE---EQVINAELKVLDRTFHITCVSMGNPHCIIFVD-NVDE 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +A +G ++   PMF    N+    + S   +  RTWERG G T ACG+ + A  VA  
Sbjct: 175 FPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGTGSSAVTVACV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              +T R +   +LGG L +EW ++  V+MTG A + +EG  D +
Sbjct: 235 LNERTERRLLNHLLGGDLEMEWAEDGSVYMTGPAVQVFEGVFDPQ 279


>gi|83942144|ref|ZP_00954606.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36]
 gi|83847964|gb|EAP85839.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36]
          Length = 302

 Score =  212 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 144/306 (47%), Gaps = 41/306 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-------------------------NITSDAINALST 40
           + F KM G+GN  +V+D R                              +T     A+  
Sbjct: 9   LPFMKMHGLGNDFVVLDAREKVVLDARQKEMLDARDGAVRADGTPALPKVTPALAQAIGH 68

Query: 41  D-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
                 FDQ+ +I    + + DA +   N DGS   +CGN  RC+ RFL     +     
Sbjct: 69  RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125

Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            T RG L A++  +G  SV+MG P L+W  IPLAR  D ++                P  
Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLEWDEIPLARQMDTLEL----------PIDGAPTA 175

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219
             MGNPH  FFV+ D+   DLA FG  +  H ++ E  N+ IA++   + + +R WERGV
Sbjct: 176 TGMGNPHCTFFVD-DVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G+T A GS++CA+ VA+     T RAV + + GG L I+W ++  V+MTG +   + G L
Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293

Query: 280 DIKTGK 285
                +
Sbjct: 294 TPSFLE 299


>gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens]
          Length = 311

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 127/283 (44%), Gaps = 12/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K +G+GN  L++D R         ++A      +     D ++ +   ++   D  
Sbjct: 25  LAFSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGEN-GADFK 83

Query: 64  IRIINCDGSEVQSCGNGMRCVV-------RFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           + I N D SE + CGNG+RC+                 + FT  T  G +V     DG I
Sbjct: 84  MTIYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLI 143

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMGEP L    +P A +    DR                  VSMGNPH++ FV+D   
Sbjct: 144 TVDMGEPELAGPKVPCALAPTDGDR-VVDAALEAGGATYAVTAVSMGNPHSVAFVDDAKA 202

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                +   +      F E VN     V     +++  WERG G+T ACG+ ACA  VA 
Sbjct: 203 VDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAVGVAG 262

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
               +T+R   V + GG L IEW + +N V+MTG A+  + G 
Sbjct: 263 VLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGS 305


>gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
 gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
          Length = 282

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D      +   + A+           D ++LI        DA +
Sbjct: 1   MKFIKMHGAGNDYVYVDGFQQDVHRPEELAVRISDRHFGVGSDGLILILPSD--CADARM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDG------SI 116
           R+ N DGSE Q CGNG+RCV ++L  +   +    T ET+ G+L      D        +
Sbjct: 59  RMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQLTIETLAGVLSVDVTADTENPAISQV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V+MG+P L    IP+             +             VSMGNPH + +V+ D+ 
Sbjct: 119 TVNMGQPRLQRGQIPMTGP---QQDQALEVEIRVKNRTFTASCVSMGNPHCVVYVD-DVE 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            +D+A +G LL  HP+F E +N+    + S   +  RTWERG G T ACG+ A A  VA 
Sbjct: 175 QFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGASAVTVAG 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
               +T R +   + GG L +E+ D+  V MTG A++ + G
Sbjct: 235 FLTGRTQRTIRNHLRGGVLTLEYCDDETVMMTGPAEQVFTG 275


>gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
 gi|145847579|gb|EDK24497.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
          Length = 277

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++         S+    +S        D +++I+    A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDWHYGVGSDGLIMINPSDKA--DFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118
            + N DGS  + CGNG+RCV    +      + S + ET+ GI       ++ +   + V
Sbjct: 59  EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P+L  + +P+    +++  +   +    +        VSMGNPHA+ F++ D+  +
Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRM----TCVSMGNPHAVVFIDQDVKEF 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G     H  F + VN     V    +  +R WERG G T ACG+ ACA  VA   
Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              T   V+VK+LGG L I+W  + N V+MTG A+  ++G+  
Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGEWK 277


>gi|325123128|gb|ADY82651.1| diaminopimelate epimerase [Acinetobacter calcoaceticus PHEA-2]
          Length = 274

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 134/275 (48%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D+      + ++ I  L+       FDQ++++        D   RI N 
Sbjct: 1   MHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFKYRIFNA 60

Query: 70  DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG+RC            + S T +T  GI+  +  ++G + V+MG P    
Sbjct: 61  DGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      +           N        VV+MGNPHA+  V  D+   D+A  G  +
Sbjct: 121 NEIPFVAEQPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVAGIGPQV 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    ++   + + LR +ERGVG T ACG+ ACA+ V+         +V 
Sbjct: 176 ESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270


>gi|163737876|ref|ZP_02145292.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107]
 gi|161388492|gb|EDQ12845.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107]
          Length = 267

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 137/271 (50%), Gaps = 16/271 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           KM G+GN  +V+D R    +IT      ++       FDQ+ +I        DA +   N
Sbjct: 2   KMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHLTFYN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+ R L     +      T RG+L+A++  +G  SV+MGEP LDW+
Sbjct: 59  ADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQLDWQ 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLA   D ++                P    MGNPH  FFV+ +     LA FG    
Sbjct: 119 DIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFVD-NAEVIPLAEFGARYE 167

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP++ E  N+ +A V + + L +R WERGVG+T A GS++CA+ VA+     T+R V +
Sbjct: 168 HHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQI 227

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + GG L I+W  +  V+MTG      +G  
Sbjct: 228 DLDGGTLWIDWRKDG-VWMTGPTMHVADGHF 257


>gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
           27560]
 gi|149735516|gb|EDM51402.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
           27560]
          Length = 277

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG GN  + ++       +    +    +       D +++I+    A  D  +
Sbjct: 1   MKFTKMEGCGNDYVYVNGFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPSDVA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILV----AKENRDGSISV 118
            + N DGSE + CGNG+RCV +++         T   ET+ GI       ++++  ++ V
Sbjct: 59  SMYNADGSEGKMCGNGIRCVAKYVYDNKMTDKTTITVETLSGIKTLVLNVEDDKVKTVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG PIL+   +P+    DK+  +   +    +        VSMGNPHAI FV+ D+   
Sbjct: 119 NMGSPILESAKVPVVSEKDKVIDEPVMVNNKEYRI----TCVSMGNPHAITFVD-DIDSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           D+   G +  K  +F E VN    +V S + + +R WERG G T ACG+ ACASVVA   
Sbjct: 174 DIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACASVVACVL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              T   V+VK+LGG L IE++ D N V+MTG A+  + G+ +
Sbjct: 234 NGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTGEFN 276


>gi|319778945|ref|YP_004129858.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9]
 gi|317108969|gb|ADU91715.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9]
          Length = 290

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 138/278 (49%), Gaps = 8/278 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M GIGN  +V+D      N+ S+ I A++        DQ++L+ +      D   RI N 
Sbjct: 1   MHGIGNDFVVLDGVSNFINVDSEIIRAIAHRQFGIGADQVLLVENPTHPEADFKYRIFNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV++CGNG RC V+F+  +    R     E   G +    N D +++VDMG P    
Sbjct: 61  DGSEVENCGNGARCFVQFIHDKHLSGRNPIKAEIATGTIELYRNEDKTVTVDMGCPTFKA 120

Query: 128 KLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             +        F   ++ +    P+++  +    +VSM NPHA+  V  D+Y   ++S G
Sbjct: 121 SDVGFDSEGISFKNENQAQVWALPLSNGSVIEISLVSMANPHAVQIV-PDVYTAPVSSQG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F+  +N    ++ S   ++LR +ERG G T ACG+ ACA+VV+         
Sbjct: 180 PLIESHPYFANRINAGFMQIISENEINLRVYERGAGETFACGTGACAAVVSGIRRGLLKS 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            V V M GG + I + D   V M G A   +EG +DI 
Sbjct: 240 PVKVNMRGGSIEISY-DGEAVIMRGPATTVFEGVIDID 276


>gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
          Length = 279

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  + I D  G + + +  A+           D +++I   + A  D  +
Sbjct: 1   MKFVKMHGLGNDFVFIEDKEGKNKDFSQLAVKMCKRHTGIGADGLIVIVPSEKA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGS-----IS 117
           RIIN DGSE + CGNG+RC  +++          FT ET+ GI+  K           ++
Sbjct: 59  RIINADGSEAEMCGNGIRCFAKYVYDHHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG+P  + + IP+      +  +   +    +        + MG PH + +V+ D+  
Sbjct: 119 INMGKPFPERRKIPMNGPSGTVINEPLTVDGKEYRITS----LLMGVPHTMIYVK-DVEQ 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL   G     HP F +  N++  +     ++ + TWERG G T ACG+ +CA  V S 
Sbjct: 174 VDLPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCACAVGSF 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
               T R V V++  G L I++ + + +V+MTG A   + G+ +
Sbjct: 234 LNGFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSYTGEWE 277


>gi|160885758|ref|ZP_02066761.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483]
 gi|156108571|gb|EDO10316.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483]
          Length = 269

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDATQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T  GI + K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               +      VSMGNPH + FVE D+   +
Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITRIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  HP+F +  N+  A++ + +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVNKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             T R   V M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 225 GLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266


>gi|192288682|ref|YP_001989287.1| diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1]
 gi|229813241|sp|B3Q862|DAPF_RHOPT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|192282431|gb|ACE98811.1| Diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1]
          Length = 293

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 129/288 (44%), Positives = 173/288 (60%), Gaps = 7/288 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   +   TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V+ D+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTDRTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD--IKTGKWIKKNE 291
            + + GG L IEW D +NHV MTG A+ E+EG+ D  +  G       
Sbjct: 246 EMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFDPALFAGALDPTGA 293


>gi|238897901|ref|YP_002923580.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465658|gb|ACQ67432.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 278

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 130/278 (46%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM  +GN  ++ID    + ++ S+ I  L+       FDQ++L+       +D   
Sbjct: 1   MRFSKMCSLGNDFVIIDAVTQNVHLRSEFICRLANRHTGIGFDQLLLLEPPNSPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC+ RF+  +    +K+    T    +         I V+MGE
Sbjct: 61  RIFNADGSEVFQCGNGARCLGRFVHLKGLTNKKNIQVSTKTVKMQIHLEEKNQICVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + IP           + +   V    L     VSMGNPH I  VE  L    +  
Sbjct: 121 PDFFPQTIPF----RSKTIKKIYELDVAEQKLLCGI-VSMGNPHCIIQVEK-LDSDQIKL 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP F EG N+   ++   + + LR +ERG G T ACGS ACA+V         
Sbjct: 175 IGPLLGCHPSFPEGTNVGFMQIIDRKHIHLRVYERGAGETQACGSGACAAVSIGVQQDLL 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
           +  V V+  GG L I W    H ++MTG A   ++G +
Sbjct: 235 DEKVHVEQKGGNLDICWKGTGHCLYMTGPADHVYDGVI 272


>gi|54293358|ref|YP_125773.1| diaminopimelate epimerase [Legionella pneumophila str. Lens]
 gi|81601542|sp|Q5WZH5|DAPF_LEGPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|53753190|emb|CAH14637.1| Diaminopimelate epimerase [Legionella pneumophila str. Lens]
          Length = 277

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE ++    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|148361018|ref|YP_001252225.1| diaminopimelate epimerase [Legionella pneumophila str. Corby]
 gi|166225727|sp|A5IHM9|DAPF_LEGPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|148282791|gb|ABQ56879.1| diaminopimelate epimerase [Legionella pneumophila str. Corby]
          Length = 277

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE ++    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|52840611|ref|YP_094410.1| diaminopimelate epimerase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603548|sp|Q5ZYK6|DAPF_LEGPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52627722|gb|AAU26463.1| diaminopimelate epimerase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 277

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE ++    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|146337529|ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278]
 gi|166224245|sp|A4YKA5|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|146190335|emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278]
          Length = 289

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/275 (44%), Positives = 172/275 (62%), Gaps = 4/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F KM GIGN+I+V+D+R     +T D   A+++     +DQ+M++   +    +AFIRI 
Sbjct: 9   FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVASR--VPYDQMMVLQRPRFDGTEAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCVV  +  +  + S TFET  G+L   +       +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPAPDLYTVDMGVPRFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHA+F+V++D+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVDNDVNSYDLERFGPL 186

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A++   + + +RTWERG GLT ACGSAACA+ VA+  L + NR V
Sbjct: 187 LENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLV 246

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG+ +
Sbjct: 247 HMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFE 281


>gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
 gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
          Length = 355

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 15/288 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R    +        + +  +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLDFAVAEPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E + CGNG+RC+ R+            +  ET  G++  +   +G 
Sbjct: 60  DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L+   IP                        N   V MGNPH +  VE DL
Sbjct: 120 LRVDMGAPFLESASIPTTLE---PLAGLPRGALEIDGVPLNVASVGMGNPHVVVPVE-DL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                  +G  L  HP+F    N+   +V + + L++R WERG G T ACG+ ACA++VA
Sbjct: 176 SRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  L   +    V + GG LLI W   +  V MTG A+  ++G +  +
Sbjct: 236 AVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDGVITPE 283


>gi|85714449|ref|ZP_01045437.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A]
 gi|85698896|gb|EAQ36765.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A]
          Length = 301

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/275 (43%), Positives = 170/275 (61%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R    ++T++   A+++     +DQ+M++   +    +A +RI 
Sbjct: 20  FSKMNGIGNEIVVVDLRDSPASVTAEEARAVASPAGVPYDQLMVLQPPRTPGTEALVRIY 79

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L    N   G  +VDMG P   
Sbjct: 80  NKDGSEANACGNGMRCVARQIFEASGKDALTFETRAGLLNCWRNSAPGLYTVDMGPPKFG 139

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V+ D+  +DL  FG L
Sbjct: 140 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD-DVNAHDLERFGPL 198

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERGVGLT ACGSAAC + VA+  L +  R V
Sbjct: 199 LENHPIFPERANITLAHIVDRDHIAMRTWERGVGLTKACGSAACGTAVAAARLKRAARIV 258

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 259 HMMLPGGDLTIEWRERDDHVLMTGPAVFEYEGTFD 293


>gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
 gi|166225744|sp|A4XNX4|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
          Length = 276

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    A           FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K+   ET  G++  +   DG + V+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKTIRVETKSGVIELRVQNDGQVCVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L+   +P         +                  +SMGNPHA+  V+ ++    + 
Sbjct: 122 APRLEPAQVPFQAE-----QAALTYRVDVEGQSVELAALSMGNPHAVLRVD-NVDSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V +++ GG L IEW  +   V MTG A + +EG++ +
Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276


>gi|316931776|ref|YP_004106758.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1]
 gi|315599490|gb|ADU42025.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1]
          Length = 293

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 129/288 (44%), Positives = 172/288 (59%), Gaps = 7/288 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQSAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   +   TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFAGSDQNGLTFETRAGLLNCWRGPADGFYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V+ D+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTERTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD--IKTGKWIKKNE 291
            + + GG L IEW D +NHV MTG A+ E+EG+ D  +  G       
Sbjct: 246 DMTLPGGRLTIEWRDSDNHVLMTGGAEFEFEGRFDPALFAGALNPTGA 293


>gi|260174400|ref|ZP_05760812.1| diaminopimelate epimerase [Bacteroides sp. D2]
 gi|315922668|ref|ZP_07918908.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696543|gb|EFS33378.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 269

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T  GI + K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               +      VSMGNPH + FVE D+   +
Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITRIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPKIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             T R   V M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 225 GLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266


>gi|39933327|ref|NP_945603.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009]
 gi|81564373|sp|Q6ND59|DAPF_RHOPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|39652952|emb|CAE25694.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009]
          Length = 293

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 128/288 (44%), Positives = 175/288 (60%), Gaps = 7/288 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T     A++      +DQ+ML+   + +  +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLSGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + S  ++   TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V+ D+  YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAYDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAAC++ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD--IKTGKWIKKNE 291
            + + GG L IEW + +NHV MTG A  E+EG+ D  + +G       
Sbjct: 246 EMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFDPALFSGALDPTGA 293


>gi|322509108|gb|ADX04562.1| dapF [Acinetobacter baumannii 1656-2]
          Length = 274

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/275 (32%), Positives = 133/275 (48%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D+      + +  I  L+       FDQ++++        D   RI N 
Sbjct: 1   MHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNA 60

Query: 70  DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG+RC            + + T +T  GI+  +  ++G + V+MG P    
Sbjct: 61  DGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      K           N        VV+MGNPHA+  V  D+   D+A  G  +
Sbjct: 121 NEIPFVAEEPKALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVAGIGPQV 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E VN    +V   + + LR +ERGVG T ACG+ ACA+ V+         +V 
Sbjct: 176 ESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270


>gi|160872224|ref|ZP_02062356.1| diaminopimelate epimerase [Rickettsiella grylli]
 gi|159121023|gb|EDP46361.1| diaminopimelate epimerase [Rickettsiella grylli]
          Length = 276

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 11/279 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM  +GN  +++D        ++  I   +       FDQ++LI   +  S   + R
Sbjct: 4   EFIKMHLLGNDFVIVDTLQQPFKPSAKLIRKWAHRQRGIGFDQLLLIEKPRSQSKHFYYR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124
           I N +G+EV  CGNG  CV R+L  + + K+     T+   L       G ++ ++G PI
Sbjct: 64  IFNANGNEVAQCGNGALCVTRYLIEKKRYKNPIHLMTMNNRLELTMEESGKVTANLGLPI 123

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF- 183
            D + IP                        +  V+S+GNPH +  V   L    L    
Sbjct: 124 FDPEKIPFINPSKAPIHPLETPFGR-----FDCCVLSLGNPHCVIQVNC-LEKAPLEDLG 177

Query: 184 -GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
                  +P F +G NL + ++   + +DLR +ERGVG T ACGS ACA+V+A   L++ 
Sbjct: 178 LYLNQHPYPYFPQGCNLELMKIRDPKQIDLRIYERGVGETQACGSGACAAVIAGRLLNRL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            + V V + GG L + W  +++ VF+ G     + G +D
Sbjct: 238 TKKVKVNLPGGLLTVRWESEHSPVFLRGTPTYVFRGSID 276


>gi|253567072|ref|ZP_04844523.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5]
 gi|251944196|gb|EES84705.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5]
          Length = 269

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 131/285 (45%), Gaps = 21/285 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++            AI   +       D ++LI     A  D
Sbjct: 2   ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+    +      +   T +T+ GI + + + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                          + D            +  F      VSMGNPH + FV+ D+   +
Sbjct: 119 -------------TVTVDMGVPLETGTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRTVN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L+  G  L KHP+F +  N+  A++    ++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LSEMGPKLEKHPLFPDRTNVEFAQIMGKNTIRMRVWERGSGITQACGTGACATAVAAHLT 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            +T R V+V M GG L IEW +   H+ MTG A K ++G ++++ 
Sbjct: 225 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 269


>gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
 gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
          Length = 354

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 17/289 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R    ++       + +  +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQDQLDVAISDPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E + CGNG+RC+ R+            +  ET  G++  +   +G 
Sbjct: 60  DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119

Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           + VDMG P L+   IP        + R    I         N   V MGNPH +  V+ D
Sbjct: 120 LRVDMGAPFLEATSIPTTLEPLGGLPRGSLEIDG----VPLNVASVGMGNPHVVVPVD-D 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L       +G  L  HP+F    N+   +V S   L++R WERG G T ACG+ ACA++V
Sbjct: 175 LSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGTGACATLV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           A+  L   +    V + GG LLI W      V MTG A+  ++G +  +
Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDGVITPE 283


>gi|53713934|ref|YP_099926.1| diaminopimelate epimerase [Bacteroides fragilis YCH46]
 gi|81608423|sp|Q64SY7|DAPF_BACFR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52216799|dbj|BAD49392.1| diaminopimelate epimerase [Bacteroides fragilis YCH46]
          Length = 269

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 21/285 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++            AI   +       D ++LI     A  D
Sbjct: 2   ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+    +      +   T +T+ GI + + + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                          + D            +  F      VSMGNPH + FV+ D+   +
Sbjct: 119 -------------TVTVDMGVPLETDTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRIVN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLT 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            +T R V+V M GG L IEW +   H+ MTG A K ++G ++++ 
Sbjct: 225 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 269


>gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
 gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
          Length = 368

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 136/285 (47%), Gaps = 15/285 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R         N     +  +         D ++L    Q A
Sbjct: 1   MLQFSKYQGLGNDFLIVEGRQGQLPDAISNPDPAWVRRICDRRFGVGGDGLILALPAQ-A 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             +  +RI+N DGSE + CGNG+RC+ R+          + +  ET+ G++  +   DG 
Sbjct: 60  DGELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L  + IP        +        +          V MGNPH +  V+ DL
Sbjct: 120 LRVDMGPPFLSSEGIPTTL---MPEDGLPQGVLLLEGEQLKVAAVGMGNPHVVVPVD-DL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L  HP F    N+   +V + E L++R WERG G T ACG+ ACA++VA
Sbjct: 176 ASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L   +    V + GG L+IEW D    V MTG A+  ++G L
Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDGVL 280


>gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
 gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
          Length = 276

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  +V        +N++  AI+  +       D ++ I   ++A  D  +
Sbjct: 1   MEFTKMHGLGNDFIVFAGHQQLPENVSQLAIDLCNRFFGIGADGLVYILPSENA--DFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDG----SIS 117
           RIIN DGSE + CGN +RCV +++                  G+   + N       ++ 
Sbjct: 59  RIINSDGSEAEQCGNAIRCVAKYVYDNGLTTNTDITIETIGAGVQQVQLNVKDGKVATVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPIL+   +P     D++      +      F      VSMGNPH + +V+ D  +
Sbjct: 119 VDMGEPILEGLKVPTTVDADRVIAHAIEVDGREFSF----TAVSMGNPHCVIYVD-DAAN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +DL ++G  L  HPMF   +N+    V S    D+R WERG G T ACG+ ACA+VV+S 
Sbjct: 174 FDLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGACATVVSSV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               T+R  +V + GG L IEW + +NHV+MTG A + + G  
Sbjct: 234 LNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGTF 276


>gi|296105914|ref|YP_003617614.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy]
 gi|295647815|gb|ADG23662.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy]
          Length = 277

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T   I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE ++    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|313901739|ref|ZP_07835167.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
 gi|313468001|gb|EFR63487.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 12/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +   KM G+GN  L +D         D++ + A      +     D ++L+   +D    
Sbjct: 8   IRLTKMHGLGNNYLFLDGLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPPRDPGAR 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS---- 115
             +RI N DGSE + CGNG+RC+ R +  R   +   F  ET  G +  + + DG     
Sbjct: 68  FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRETEFVVETGAGPIRPRLHLDGHRVTG 127

Query: 116 ISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMG P L+  +IP+A    ++       +       +     +SMGNPH + FV+ D
Sbjct: 128 VTVDMGVPRLERGMIPMAGPAGEQAVEVPLEVEAGGERSVFTVTALSMGNPHCVVFVD-D 186

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L   DL   G     HP F + VN    RV + E + +R WERG G T ACG+ ACA  V
Sbjct: 187 LEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVWERGSGPTLACGTGACAVAV 246

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           A     +T R V+V++ GG L +EW  + HV+MTG A   
Sbjct: 247 AGALTGRTGRRVTVELPGGSLEVEWAGDGHVYMTGPAAYI 286


>gi|154492518|ref|ZP_02032144.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC
           43184]
 gi|154087743|gb|EDN86788.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC
           43184]
          Length = 274

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 14/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++       N    AI   +       D ++LI   + A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMAFPVRNPEELAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGN  RC+ +++  +    +K+ T ET+ GI   +          +  
Sbjct: 63  RIFNADGSEAMMCGNASRCIGKYVYDKRLTNKKNITLETLSGIKELQLTTRK-----LSG 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   + +      +      I   ++       V+SMGNPH + FVE D+ + +L  
Sbjct: 118 PHEEVTEVTVDMGCPVIGETALEIEAGDY--FYTGTVISMGNPHLVIFVE-DITNINLPV 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F    N+   +  S + + ++ WERG G+T ACG+ ACA+ VAS    KT
Sbjct: 175 IGPLLECHPLFPNRTNVEFVQALSTDEVRMKVWERGSGITQACGTGACATAVASAVRGKT 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L I W + + HV+MTG A K +EG+L+I
Sbjct: 235 GRKTKVVMDGGPLTIHWDESSGHVYMTGGAVKVFEGELEI 274


>gi|119943833|ref|YP_941513.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
 gi|166225746|sp|A1SQZ9|DAPF_PSYIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119862437|gb|ABM01914.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
          Length = 275

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/279 (33%), Positives = 143/279 (51%), Gaps = 9/279 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID    +  ++ D I+ L+       FDQ+++I    D  +D   
Sbjct: 3   IQFSKMHGLGNDFMVIDNVTQNVFLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV+ CGNG RC  RF+  +   +++     T +G +  K   DG+I+VDMG+
Sbjct: 63  RIFNADGSEVEQCGNGARCFARFVKMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PIL+   +P         ++                VVS+GNPH +  V+ D+ +  + +
Sbjct: 123 PILEPAKVPFEA-----QKEEKTYILRVEDHTVLCGVVSIGNPHCVVLVD-DIDNAPVET 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F   VN+    + S +   LR WERGVG T ACG+ ACA+ V      K 
Sbjct: 177 LGPLLENHERFPNKVNVGFLEIKSRDHARLRVWERGVGETLACGTGACAAAVVGQLQDKL 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           N   ++++ GG L + W     V MTG A   ++G++ I
Sbjct: 237 NPHCTIELPGGELRLFWQPGQSVKMTGTADFVFDGQIQI 275


>gi|92119035|ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14]
 gi|122416839|sp|Q1QHJ3|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91801929|gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14]
          Length = 290

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 117/275 (42%), Positives = 170/275 (61%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F+KM GIGN+I+V+D+R     +T++   A+++     +DQ+M++   +    +AF+ I 
Sbjct: 9   FSKMNGIGNEIVVVDLRDRPAAVTAEEARAVASPGGVPYDQLMVLQPPRLPGTEAFVSIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R +     + + TFET  G+L   +    G  +VDMG P   
Sbjct: 69  NNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPAPGLYTVDMGPPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V+ D+  +DL  FG L
Sbjct: 129 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD-DVNAHDLERFGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG G+T ACGSAACA+ VA+  L + +R V
Sbjct: 188 LENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GGGL IEW + ++HV MTG A  E+ G  D
Sbjct: 248 DMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFD 282


>gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
 gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
          Length = 278

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +    A            D I+L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNFLAKRMCHRHIGVGADGILLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117
           RIIN DGSE + CGNG+RC  +++  R   K   F  ET+ GI+  +   +       + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    D  +              + MG PH + FV+ D+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPE---SDAINTPIEVEGKEYKITSLLMGVPHTVLFVD-DVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L IEW D++ VFMTG A++ + G+
Sbjct: 235 LNGLTERKANVHLYFGTLEIEWQDDDTVFMTGPAEEVFVGE 275


>gi|54296402|ref|YP_122771.1| diaminopimelate epimerase [Legionella pneumophila str. Paris]
 gi|81602021|sp|Q5X822|DAPF_LEGPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|53750187|emb|CAH11579.1| Diaminopimelate epimerase [Legionella pneumophila str. Paris]
          Length = 277

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T   I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE ++    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISIGNPHAVLLVE-NIDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|298293309|ref|YP_003695248.1| diaminopimelate epimerase [Starkeya novella DSM 506]
 gi|296929820|gb|ADH90629.1| diaminopimelate epimerase [Starkeya novella DSM 506]
          Length = 293

 Score =  210 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 113/274 (41%), Positives = 159/274 (58%), Gaps = 3/274 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+I+V+D+R     +      AL+ +D   FDQIM ++  +     AF+RI
Sbjct: 8   PFVKMNGLGNEIVVLDLRDAPLPVPPAEARALAREDVLPFDQIMALYPPKSEGTRAFVRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           IN DGSE  +CGNG RC+  +   R       FE++ G+L      +G I+ DMG P   
Sbjct: 68  INADGSEAGACGNGTRCIALYEAGRTGDNHVVFESVAGLLDCTVAPEG-ITADMGVPHFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA             GP     LR P VV++GNPHAIF+V  D+   DL  +G  
Sbjct: 127 WHDIPLAGPVADTRAIELQAGPAEAPVLRAPSVVNVGNPHAIFWV-HDIEAVDLGRYGPE 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+S A+V S + + L+ WERG GLT ACGSAACA+ V++  +  T R V
Sbjct: 186 LEHHPVFPERANISAAQVVSPDHIVLKVWERGAGLTKACGSAACAAAVSAARIGLTGRRV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +V + GG L+I+W + ++H+ MTG A  E++G+L
Sbjct: 246 TVTLPGGDLVIDWRESDDHILMTGPAVFEFDGRL 279


>gi|209521421|ref|ZP_03270131.1| Diaminopimelate epimerase [Burkholderia sp. H160]
 gi|209498139|gb|EDZ98284.1| Diaminopimelate epimerase [Burkholderia sp. H160]
          Length = 307

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V+D      N+T+  + AL+        DQ++L+       VD   
Sbjct: 3   LKFTKMHGAGNDFVVLDGYTQPVNLTTAQVRALANRHFGVGADQLLLVEKPTVEGVDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG EV+ CGNG RC V+F+  R    ++S   +  +G +      +G + VDMG 
Sbjct: 63  RIFNCDGGEVEHCGNGARCFVKFVRDRGLTDQRSVRVQVQKGTITLTMQDNGEVIVDMGT 122

Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+ D +L+P A    +  R+          +   R   VVSMGNPHA+  V+ D   + +
Sbjct: 123 PVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVVD-DAEAFPV 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  + +H  F + VN    ++ +   + LR +ERG G T ACG+ ACA+  A     
Sbjct: 182 LVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAAAAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282
             +  V V   GG L I W        + M G A   +EG++++ 
Sbjct: 242 LLDAPVLVHTHGGDLTITWDIAQPGTPLLMAGPAATVFEGEIELA 286


>gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
 gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
          Length = 268

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T  GI + K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               +      VSMGNPH + FVE D+   +
Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITQIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             T R   V M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 225 GLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266


>gi|307264792|ref|ZP_07546354.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920050|gb|EFN50262.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 274

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+      + +  AI           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALEN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R   K      ET+ G+++ +         S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGEVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M  PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MSNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLTS----LRVGVPHTIVFVE-SLDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G LL+EW ++N ++++G  ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274


>gi|319899509|ref|YP_004159606.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73]
 gi|319403477|emb|CBI77057.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73]
          Length = 284

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 129/284 (45%), Positives = 170/284 (59%), Gaps = 5/284 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM G+GNKI+V DMR    NIT  A+ AL+ +  THFDQIM IH       D  I I
Sbjct: 4   PFSKMNGLGNKIIVADMRENTHNITLQAVLALAKNPQTHFDQIMTIHPSTKNETDFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS+ ++CGNG RCV+ +LT+    +SF  ET  GI+  K   +G ISV+MG P  D
Sbjct: 64  WNADGSKAKACGNGTRCVIEWLTNHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFD 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P+A      +      GP     L++  +VS GN HAIFFVE ++ H  L  +G  
Sbjct: 124 IKNMPIAYEIADTNHVEITAGP-----LKDASLVSFGNLHAIFFVESNIQHIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA VTS  SL LRTWERG GLT ACG+AACAS VA+     T R +
Sbjct: 179 LEHDPLFPERCNISIAFVTSRNSLILRTWERGAGLTKACGTAACASAVAAYRRGLTERRI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           +V +LGG L I + +++H+ MTG  + E+ G L   TG + K +
Sbjct: 239 NVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLSPLTGDYKKDS 282


>gi|225023710|ref|ZP_03712902.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC
           23834]
 gi|224943592|gb|EEG24801.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC
           23834]
          Length = 282

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 144/281 (51%), Gaps = 7/281 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62
           +++ F KM G+GN  +VID    H +  +  I           FDQ++L+        + 
Sbjct: 2   AVLKFTKMHGLGNDFMVIDGISQHFDPAAAPIAEWADRHRGIGFDQLLLVEVPPLPEAEF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV+ CGNG RC  RF+  +   + +     T +G++V     +G ++VDM
Sbjct: 62  GYRIFNADGSEVEQCGNGARCFARFVHEKGLSRNRRIRVATAKGLIVLNLQENGLVTVDM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP L    IP + +  +     +H   ++    R    V+MGNPHA+  V+ D++   +
Sbjct: 122 GEPRLAAADIPFSPAPGEAADALWHEIGLDGASAR-FSCVNMGNPHAVLVVD-DVHCAPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  L +HP F E VN+   +V     + LR +ERG G T ACG+ ACA+ VA     
Sbjct: 180 AEWGARLERHPQFPERVNVGFLQVLDTHHIRLRVFERGTGETQACGTGACAAAVAGMRAG 239

Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              R   V V + GG L IEW  +NHV M+G A   +EG +
Sbjct: 240 LLARQGAVCVSLPGGDLQIEWAADNHVLMSGSAATVFEGTV 280


>gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
 gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
          Length = 274

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+      + +  AI           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALEN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R   K      ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MGNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLTS----LRVGVPHTIVFVE-SLDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G LL+EW ++N ++++G  ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274


>gi|218530898|ref|YP_002421714.1| diaminopimelate epimerase [Methylobacterium chloromethanicum CM4]
 gi|254767110|sp|B7KQM2|DAPF_METC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218523201|gb|ACK83786.1| Diaminopimelate epimerase [Methylobacterium chloromethanicum CM4]
          Length = 296

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 129/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI
Sbjct: 8   RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV         +    +  + T ET  G++  K   + S +VDM
Sbjct: 68  YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPL   F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL
Sbjct: 128 GQPRLRWDEIPLTEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  HP+F E  N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              RA  V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293


>gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
 gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
          Length = 280

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +DF KM G+GN  + I D  G   + T+ A    +       D +++I D + A  D  +
Sbjct: 1   MDFVKMHGLGNDFVFIEDKTGQDKDYTALARAMCNRHTGIGADGLIVIVDSRVA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++       +K FT ET  GI+  +      N+   I+
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQFTVETPAGIMEPEITVGADNKAKLIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG P  +   IP+  +  ++  +   +   N         + MG PH + +V+ D+  
Sbjct: 119 INMGRPSFNRSEIPMEGADGRVLNEDLCVDGEN----WKVTSLLMGVPHTVTYVD-DVDT 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G L  KH  F +  N++ A+     ++ +RTWERG G T ACG+ +C+  VAS 
Sbjct: 174 VDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSVAVASF 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +T R V +++  G L IE+  ++ +V+MTG A   + G  
Sbjct: 234 LNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTGTW 276


>gi|60682141|ref|YP_212285.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343]
 gi|60493575|emb|CAH08364.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343]
 gi|301163620|emb|CBW23173.1| diaminopimelate epimerase [Bacteroides fragilis 638R]
          Length = 272

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 21/285 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++            AI   +       D ++LI     A  D
Sbjct: 5   ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+    +      +   T +T+ GI + + + +G     
Sbjct: 63  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                          + D            +  F      VSMGNPH + FV+ D+   +
Sbjct: 122 -------------TVTVDMGVPLETGTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRIVN 167

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 168 LSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLT 227

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            +T R V+V M GG L IEW +   H+ MTG A K ++G ++++ 
Sbjct: 228 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 272


>gi|13473650|ref|NP_105218.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099]
 gi|21362484|sp|Q98EB6|DAPF_RHILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|14024400|dbj|BAB51004.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099]
          Length = 294

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 148/286 (51%), Positives = 192/286 (67%), Gaps = 1/286 (0%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            FAKM GIGN+I+V DMRG  D +T+ A  AL+ D  T FDQIM IHD +      ++ I
Sbjct: 6   PFAKMNGIGNEIIVADMRGRADQVTAAAALALNGDAATRFDQIMAIHDARTPGTAYYVDI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DG+  Q+CGNGMRCVV+ L +   +K+FTFET  GIL A+E+ DG+ISVDMG P   
Sbjct: 66  LNSDGTSAQACGNGMRCVVQALAAETGQKTFTFETRAGILNAREHADGTISVDMGMPHFG 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P  VSMGNPHAIF+V+ D++ Y+L  FG L
Sbjct: 126 WQEIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELERFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N++IA+VTS ES+ +RTWERG GLT ACGSAACASVVA+    +T R+V
Sbjct: 186 LENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAAARTRRTGRSV 245

Query: 247 SVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           ++    GG L +EW DN+HV +TG A+ E+ G  D  TG W +  E
Sbjct: 246 NLLTPGGGTLHVEWLDNDHVILTGAAEWEFSGSFDPSTGTWARDTE 291


>gi|312878385|ref|ZP_07738293.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794840|gb|EFR11261.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 278

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +  S A            D ++L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117
           RIIN DGSE + CGNG+RC  +++  R   K   F  ET+ GI+  +   +       + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    D  +              + MG PH + FV+ D+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPE---SDAINTSIEVDGKEYKITSLLMGVPHTVLFVD-DVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS 
Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIASN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L IEW D+  VFMTG A++ + G+
Sbjct: 235 LNGYTERKANVHLYFGTLEIEWQDSGTVFMTGPAEEVFVGE 275


>gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
 gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
 gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
 gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
          Length = 269

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 87/282 (30%), Positives = 130/282 (46%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T  GI + K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               +      VSMGNPH + FVE D+   +
Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITRIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  HP+F +  N+  A++ S +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             T R   V M GG + IEW++ + H+ MTG A K ++G+++
Sbjct: 225 GLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEIE 266


>gi|171464283|ref|YP_001798396.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193821|gb|ACB44782.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 284

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 15/285 (5%)

Query: 11  MEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V++      + IT +    L+        DQI+L+ +      D   RI N
Sbjct: 1   MHGDGNDFIVLNGIDQDLSGITREQWQVLAHRQFGIGADQILLVENATRPDADFRYRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DG EV+ CGNG RC VRF+       +     E    +L  K + DG + VDMG PI +
Sbjct: 61  ADGGEVEQCGNGSRCFVRFVQDHGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFE 120

Query: 127 WKLIPLARSFD---KMDRDRFHIGPVNHLFLRNP--FVVSMGNPHAIFFVEDDLYHYDLA 181
            + IP         +  ++  ++  +NH    +    V+SMGNPHA+  V  D+    + 
Sbjct: 121 HRQIPFNADGLASVQEFQETLYVLSLNHPATHDGLVSVLSMGNPHAVQVVG-DVDSAPVL 179

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  + +   F + VN    +V +   + LR +ERG G T ACG+ ACA+VV+      
Sbjct: 180 EEGPEIEQFAAFPKKVNAGYLQVINRNEIKLRVFERGAGETLACGTGACAAVVSGIRRGL 239

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281
            +  V V   GG L+I W   +      V MTG A   +EG+ +I
Sbjct: 240 LDSPVKVNTRGGDLVIAWAGASEGVAQPVIMTGPAVTVFEGETEI 284


>gi|307302460|ref|ZP_07582217.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C]
 gi|307316210|ref|ZP_07595654.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|21362480|sp|Q92L46|DAPF_RHIME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|306898050|gb|EFN28792.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|306903130|gb|EFN33720.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C]
          Length = 301

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD + A  DA+I 
Sbjct: 5   VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   RK+F F T+ G+L AKE+ +G+ISVDMG+P  
Sbjct: 65  IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 125 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V      +T R 
Sbjct: 185 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 244

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG + +   +
Sbjct: 245 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 292


>gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1]
          Length = 292

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 19/297 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++      +        LS        D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYIYVNCFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118
           RI N DGSE   CGN  RC+ +++  +    ++  T ET  GI          +    +V
Sbjct: 59  RIFNADGSEAMMCGNATRCIGKYVYEKGLTDKEDITLETNSGIRYLHLTAVNGVVEAVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ +L  K IP+    D+                 +   VSMGNPHA+ FV  D    
Sbjct: 119 DMGKAVLVPKDIPVNSDLDRFISQPVEADGR----TWSVTCVSMGNPHAVIFVG-DTDSL 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H +F + +N    +V    +L +R WERG G T ACG+ ACAS VA+  
Sbjct: 174 DLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACASAVAAVL 233

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
                 +  + + + GG L I +  +  V M G A+   +G++     ++I+K +++
Sbjct: 234 NGICPRDEEILIHLRGGDLTITYRSDETVIMKGPAEFICDGEVK---DEYIEKAKEN 287


>gi|163852139|ref|YP_001640182.1| diaminopimelate epimerase [Methylobacterium extorquens PA1]
 gi|229807499|sp|A9W6A5|DAPF_METEP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|163663744|gb|ABY31111.1| Diaminopimelate epimerase [Methylobacterium extorquens PA1]
          Length = 296

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 129/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI
Sbjct: 8   RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV         +    +  + T ET  G++  K   + S +VDM
Sbjct: 68  YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL
Sbjct: 128 GQPRLRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  HP+F E  N+SIA VT  +++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              RA  V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293


>gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
 gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
          Length = 281

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 135/285 (47%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + I+       N ++ +            D ++L+     A  D  +
Sbjct: 3   LHFYKMQGIGNDYVYINAMETKVPNPSALSKTVSDRHFGIGSDGLILLLPSTVA--DVRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDG----SISV 118
           ++ N DGSE + CGNG+RCV +        KS   T ET+ GI   K   +     S+ V
Sbjct: 61  QMFNADGSEGKMCGNGIRCVGKLAYELDICKSESMTVETLSGIKTLKLQVEDGKVSSVCV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P ++ + IP+  +  +M      +    +    +   VSMGNPHA+ F +  +   
Sbjct: 121 DMGSPSMEIEKIPVRYTERRMVEAPLTVNGTTY----SVTCVSMGNPHAVIFTDG-IDEM 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L   G     H +F E VN           L +R WERG G T ACG+ ACA VVA+  
Sbjct: 176 ELEKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAVVVAACL 235

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +      V V + GG L I W DN+ V+MTG A+  + G ++I
Sbjct: 236 TKRCPRGEDVDVLLRGGKLTIRW-DNDRVWMTGPAELVYTGDIEI 279


>gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
 gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
          Length = 280

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 127/283 (44%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  + I+            +             D ++ I    +   DA+
Sbjct: 1   MRFTKMQGAGNDYVYINCFAEQFPADPAEVARQMSDRHFGVGGDGVIYICPS-NQGADAW 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN------RDGSIS 117
           +R+ N DGSE + CGNG+RCV +F+     + +       G  +   +      +   + 
Sbjct: 60  MRMFNADGSESEMCGNGLRCVAKFVHDHGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PI++   IP     +         G  +         VSMGNPH + FV  +   
Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPPVNATLEAGGRSFE----VTSVSMGNPHCVVFV-PEATD 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  +   PMF   VN+    V S   L  RTWERG G T ACG+ A A  VA  
Sbjct: 175 ELVLGIGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVCVAGV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              +T R V++ +LGG L +EW++ +N ++ TG A + + G+ 
Sbjct: 235 LTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPAVEVFSGEW 277


>gi|308051402|ref|YP_003914968.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799]
 gi|307633592|gb|ADN77894.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799]
          Length = 269

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +  ++ D I  L+       FDQ++++    D   D   RI N 
Sbjct: 1   MHGLGNDFMVVDGVTQNLYLSPDKIRQLADRHLGIGFDQLLVVEPPYDPEQDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC  RF+  +    +      T  G LV   + +  ++V+MG P  + 
Sbjct: 61  DGSEVEQCGNGARCFARFVRLKGLTHKNRIQVSTQGGPLVLDLDGEDRVTVNMGVPNFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P   +      ++ ++ P +   +     VSMGNPH +  VE D+    + S G LL
Sbjct: 121 ASLPFRAN----KVEKTYLLPTDVQTVLAG-AVSMGNPHCVIRVE-DIDSAPVESVGPLL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            +H  F +GVN+   +V +   + LR +ERG G T ACG+ ACA+ V           V 
Sbjct: 175 ERHDRFPKGVNVGFMQVMNPNHIRLRVFERGAGETQACGTGACAAAVVGQFQGLLGDRVR 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           V + GG L I W      V+MTG A   ++G++++
Sbjct: 235 VDLPGGSLHIRWAGEGKPVYMTGPAVHVYDGQIEL 269


>gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
 gi|122401301|sp|Q1I303|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
          Length = 276

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I           +    FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG + VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQVCVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D             +     VSMGNPH++  V+ D+    + 
Sbjct: 122 PPRFVPADIPF-----IADEQALSYPLEVDGQVHQIAAVSMGNPHSVLRVD-DVRTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  V++ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276


>gi|329895689|ref|ZP_08271112.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088]
 gi|328922207|gb|EGG29561.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088]
          Length = 277

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 90/276 (32%), Positives = 124/276 (44%), Gaps = 5/276 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN   V+D+R     +TS+ I           FDQ++++       VD   
Sbjct: 3   IRFTKMHGLGNDFFVLDLRAQDVELTSERILAWSDRHRGVGFDQLLVLEPATQTGVDFKY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DGSEV+ CGNG RCV RF      +  F  ET RG+L      D  + V MG P 
Sbjct: 63  RIFNADGSEVEHCGNGARCVARFAQRSSGQSDFVCETARGLLTLSVLDDQQVKVAMGIPT 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP       ++ +                 +  GNPHA+ +V        +   G
Sbjct: 123 FKPSEIPFVADDAALNYNLPLYPDQASQIKVGALAI--GNPHAVVWVS-STAAAPVEELG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            +L  HP F   VN+  A       ++LR +ERGVG T ACG+ ACA+ +          
Sbjct: 180 PILESHPRFPNRVNVGFAERVDEHEINLRVFERGVGETEACGTGACAAAIHGMLTQGLVS 239

Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
            VSV + GG L I+W      V MTG A   ++G+L
Sbjct: 240 PVSVHLPGGTLQIDWQGMGEQVIMTGPATFVYDGEL 275


>gi|148550337|ref|YP_001270439.1| diaminopimelate epimerase [Pseudomonas putida F1]
 gi|148514395|gb|ABQ81255.1| diaminopimelate epimerase [Pseudomonas putida F1]
          Length = 276

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SV+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP               G      L +   VSMGNPHA+  V+ D+    + 
Sbjct: 122 PPRFIPAEIPFVADAQAPSYPLVVDG-----QLYSIAAVSMGNPHAVLRVD-DVSTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|15966992|ref|NP_387345.1| diaminopimelate epimerase [Sinorhizobium meliloti 1021]
 gi|15076265|emb|CAC47818.1| Probable diaminopimelate epimerase [Sinorhizobium meliloti 1021]
          Length = 306

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD + A  DA+I 
Sbjct: 10  VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   RK+F F T+ G+L AKE+ +G+ISVDMG+P  
Sbjct: 70  IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 130 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V      +T R 
Sbjct: 190 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 249

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG + +   +
Sbjct: 250 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 297


>gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
 gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
          Length = 278

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/282 (26%), Positives = 125/282 (44%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       +    AI   + +     D ++LI     A  D  +
Sbjct: 1   MKFTKMQGAGNDYVYVNCFEETVADPRQVAIQVSNRNFGIGSDGLILIMPSTTA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA-------KENRDGSIS 117
           R+ N DGSE + CGNG+RCV ++                G  +         + +   + 
Sbjct: 59  RMFNSDGSESEMCGNGIRCVAKYAFDHGIVSKKEITAETGAGILALRLIAGSDGKIAKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P L    IP+                       N    SMGNPH + FV+ D+  
Sbjct: 119 VNMGPPRLARSEIPMRGDAAPQVVGEQLTIL---DRTFNITCASMGNPHCVIFVD-DVAG 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + ++++G L+  H +F    N+   ++ S   +  RTWERG G T ACG+ + A   A  
Sbjct: 175 FPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSSAVTAACV 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               T + +   + GG L +EW ++ +++MTG A + + G++
Sbjct: 235 LNGLTEKRILNHLSGGDLEMEWAEDGNIYMTGPAVEVFSGEI 276


>gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
 gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
          Length = 279

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 11/282 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G+GN  ++ID R   + + S    +   +       D ++ +    D   D  
Sbjct: 1   MYFFKYQGLGNDFILIDNRSSSELLLSSGQILKMCNRHFGIGADGVIFLL-SGDKVSDYG 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVD 119
           + I N DGSE + CGNG+RC++ F+++        K +  +T+ GI+ A+      + V+
Sbjct: 60  MHIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVE 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P+   K IP   S    D    +              V+MGNPH I FVE D    +
Sbjct: 120 MGTPLFLNKQIPTTLS--DKDNTVINYPLEIEKKNWLVTCVNMGNPHCITFVE-DTNLIN 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L   H  F E +N     +     L +R WERG G T ACG+ ACASVVA    
Sbjct: 177 LEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAGVIT 236

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           ++  R  +V++ GG LLIEW ++ N V+MTG A++ + G+ +
Sbjct: 237 NRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIGEYN 278


>gi|330501237|ref|YP_004378106.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01]
 gi|328915523|gb|AEB56354.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01]
          Length = 276

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H ++    A           FDQ++++       VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  G++  +   DG + V+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKVIRVETKSGVIELRVQNDGQVCVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + +P         +   +              +SMGNPHA+  V+ +     + 
Sbjct: 122 APRLQPEQVPFQAE-----QAALNYRVDVDGQSVELAALSMGNPHAVLRVD-NTDDAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  L  HP F + VN+   +V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            +  V +++ GG L IEW  +   V MTG A + +EG++ +
Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276


>gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
 gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
          Length = 276

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D    +        L +   VSMGNPHA+  V+ D+    + 
Sbjct: 122 PPRFTPAEIPFVA-----DAQALNYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVRTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276


>gi|33594001|ref|NP_881645.1| diaminopimelate epimerase [Bordetella pertussis Tohama I]
 gi|33599182|ref|NP_886742.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50]
 gi|33564075|emb|CAE43343.1| diaminopimelate epimerase [Bordetella pertussis Tohama I]
 gi|33575228|emb|CAE30691.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50]
 gi|332383418|gb|AEE68265.1| diaminopimelate epimerase [Bordetella pertussis CS]
          Length = 303

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 133/292 (45%), Gaps = 12/292 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M +F KM G GN  +V+D       +T +   AL+        DQI+L+     A  D  
Sbjct: 8   MWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFR 67

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC VRF+  +    R     E + G++V  E  D  ++VDMG
Sbjct: 68  YRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMG 127

Query: 122 EPILDWKLIPLARSF-------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               D   +P   +             +     P           V++ NPHA+  V+ D
Sbjct: 128 STRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVD-D 186

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  HP F+  VN+   +V     + LR +ERG G T ACG+ ACA+V 
Sbjct: 187 VDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVA 246

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           A       +  V V   GG L ++W+    + MTG A   + G++DI    +
Sbjct: 247 AGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDIDRLVF 297


>gi|255597224|ref|XP_002536724.1| Diaminopimelate epimerase, putative [Ricinus communis]
 gi|223518756|gb|EEF25659.1| Diaminopimelate epimerase, putative [Ricinus communis]
          Length = 271

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 136/277 (49%), Gaps = 10/277 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G+GN  +V+D       +T  A+  L+        DQ++L+     + +D   RI N 
Sbjct: 1   MQGLGNDFVVLDGVRQSIELTESAVRQLADRHFGIGCDQLLLVEKSDRSDIDFRYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC VRF+  +    +     ET +GI++ +   +G ++VDMG P+ D 
Sbjct: 61  DGSEVEQCGNGARCFVRFVHDQGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPVFDP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP        D+            +     +SMGNPHA+  VE ++    + + G L+
Sbjct: 121 SEIPF-----DSDQPALTYPLDLDGNVVEISAISMGNPHAVQVVE-NIETAPVETQGPLI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F   VN    +V     + LR +ERG G T ACG+ ACA+ VA       +  V+
Sbjct: 175 EHHQRFPNRVNAGFMQVVDRSHIRLRVYERGAGETLACGTGACAAAVAGMTRGLLDHTVT 234

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283
           V   GG L+I+W    H V MTG A   + G++++  
Sbjct: 235 VSTRGGDLVIQWQGYGHSVMMTGPAVVVFSGEIELGA 271


>gi|315121875|ref|YP_004062364.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495277|gb|ADR51876.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 289

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 213/288 (73%), Positives = 238/288 (82%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ SMV FAKMEGIGNKILV+DMR   DNIT +AIN LST+DN  FDQIM IH+ Q+   
Sbjct: 1   MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFIRIIN DGSE QSCGNGMRCVVRFL+S+ K+K+F FETIRGIL AKEN DGSISVDM
Sbjct: 61  DAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEPILDW+ IPLA+ FD  D  +F+IGP+N+ FLR+P +VSMGNPHAIFFVEDD+Y YDL
Sbjct: 121 GEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           + FG LL  + MF EGVNLSIARVTS+ SLDLRTWERG GLTAACGSAACASVVAS    
Sbjct: 181 SGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSG 240

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            T+R VSV MLGG LLIEWH NNHVFM+G A K+W+G LDIKTGKW K
Sbjct: 241 NTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTK 288


>gi|33594907|ref|NP_882550.1| diaminopimelate epimerase [Bordetella parapertussis 12822]
 gi|33564983|emb|CAE39930.1| diaminopimelate epimerase [Bordetella parapertussis]
          Length = 303

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 133/292 (45%), Gaps = 12/292 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M +F KM G GN  +V+D       +T +   AL+        DQI+L+     A  D  
Sbjct: 8   MWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATQADADFR 67

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC VRF+  +    R     E + G++V  E  D  ++VDMG
Sbjct: 68  YRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMG 127

Query: 122 EPILDWKLIPLARSF-------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               D   +P   +             +     P           V++ NPHA+  V+ D
Sbjct: 128 STRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVD-D 186

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G L+  HP F+  VN+   +V     + LR +ERG G T ACG+ ACA+V 
Sbjct: 187 VDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVA 246

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           A       +  V V   GG L ++W+    + MTG A   + G++DI    +
Sbjct: 247 AGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDIDRLVF 297


>gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 285

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 14/287 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC---HDNITSD--AINALSTDD-NTHFDQIMLIHDFQDA 58
           ++ F K +G+GN  ++ID R     ++ +T+D   +  +         D I+L+ + +  
Sbjct: 3   IIKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQNSER- 61

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDGS 115
             +  ++I N DGS  + CGNG+RC++++L +  +     +F  ET+ G L         
Sbjct: 62  GANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGDH 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MG P  + K IP   S + ++     +   N       + + MGNPH +  ++  +
Sbjct: 122 IRVNMGSPSFEPKAIPTTLSPNNLNIPEGTVTIKNENIT--MYGIGMGNPHMVIILK-SI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G        F    N+    V ++  + ++ WERG G T ACG+ ACA +  
Sbjct: 179 EDLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGACACLAV 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           +  L  TN    V + GG L I+W +  + ++MTG A+  + G+L I
Sbjct: 239 TSLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285


>gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
 gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
          Length = 364

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 127/285 (44%), Gaps = 15/285 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN---ITSDAI---NALSTDDNTHFDQIMLIHDFQDA 58
           M+ F+K +G+GN  L+++ R        +  D +              D ++L    Q  
Sbjct: 1   MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQ-G 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115
             D  +RI N DGSE + CGNG+RC+ RF          K +  ET  G++  +   DG 
Sbjct: 60  QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQ 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + VDMG P L+   IP                            V MGNPH +  VE DL
Sbjct: 120 LRVDMGAPFLEPSSIPTTLPL---VDGLARGSADLADRALEVAAVGMGNPHVVVPVE-DL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                 ++G  L  H +F    N+   +V +   L++R WERG G T ACG+ ACA++VA
Sbjct: 176 NAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACGTGACATLVA 235

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +  L   +    V + GG L I W   +  V MTG A   ++G L
Sbjct: 236 AVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDGVL 280


>gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1]
 gi|189082837|sp|B0KQ41|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1]
          Length = 276

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D             L +   VSMGNPHA+  V+ D+    + 
Sbjct: 122 PPRFIPAEIPFVA-----DAQALSYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVRTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276


>gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409913|gb|ABP66917.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 278

 Score =  208 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +    A            D ++L+ +   A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDTRGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R   K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    +   +   N   +     + MG PH I FV+ D+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH  F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L I+W D++ VFMTG A++ + G+
Sbjct: 235 LNGLTERKANVHLYFGTLEIQWQDDDTVFMTGPAEEVFVGE 275


>gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
          Length = 277

 Score =  208 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G + + T  AI           D ++++      + D  +
Sbjct: 1   MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPS--NTCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGNG+RC     +    + + +FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P  + K IP+  + DK+      +    +        V +G PH   FV+ D+   
Sbjct: 119 DMGKPFFNSKDIPMNVTMDKV----IDVDLDVNGETVTVSSVLLGVPHTEVFVD-DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V +   + +RTWERG G T ACG+ +CAS V S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSCASAVMSHK 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I+
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277


>gi|257095703|ref|YP_003169344.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048227|gb|ACV37415.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 276

 Score =  208 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T+  +  L+        DQI+L+       +D   
Sbjct: 3   MPFVKMHGLGNDFVVLDGVRQSVVLTAPQLRHLADRHFGIGCDQILLVEPASQPGIDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG RC VRF+  +    ++    ET+ G++  +   DG+++VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARCFVRFVHEQGLTAKREIRVETMGGVIGPRLEDDGTVTVDMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+     IP   +      +                 V MGNPHA+  V  D+    +  
Sbjct: 123 PVFASAQIPFVAA-----TEDLVQTLRVADEDIAITAVGMGNPHAVQVV-ADVDLAPVER 176

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L+  HP F + VN    +V    ++ LR +ERG G T ACG+ ACA+ VA       
Sbjct: 177 QGPLIEAHPRFPQRVNAGFMQVLDRHTIRLRVFERGAGETLACGTGACAAAVAGIARGLL 236

Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           +  V V   GG L I W+ +   V MTG A   ++G++++
Sbjct: 237 DSPVRVATRGGELTIAWNGHATPVLMTGPAVTVFKGEIEL 276


>gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
 gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
          Length = 276

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +IT   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRNDGQISVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP   S                    +   VSMGNPHA+  V +D+ +  + 
Sbjct: 122 APRLVPADIPFQAS-----EQAASYALDVEGQSVDIAAVSMGNPHAVLRV-NDINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276


>gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1]
          Length = 276

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D             L +   VSMGNPHA+  V+ D++   + 
Sbjct: 122 PPRFIPAEIPFVA-----DAQALSYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVHTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|110678169|ref|YP_681176.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114]
 gi|109454285|gb|ABG30490.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114]
          Length = 280

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 139/275 (50%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R    +IT     AL        FDQ+ LI + +       +
Sbjct: 12  LPFMKMHGLGNDFVVLDARRRSMDITPRFAQALGHRHTGVGFDQLALITNTKTG---VHL 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+  ++ ++      T  T RG+L A    +G  SV+MG P 
Sbjct: 69  AFFNADGSVSSACGNATRCIADYIMAQTGASDMTLSTDRGVLAACRAANGQTSVNMGAPQ 128

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLAR  D ++                P    MGNPH  FFV+ D+   D+A  G
Sbjct: 129 LDWTEVPLAREMDTLEL----------PIEGTPTATGMGNPHCTFFVD-DVMQTDVAKLG 177

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F +  N+  A +T  +++ +R WERGVG+T A GS++CA  VA+     T R
Sbjct: 178 AELEHHELFPQRTNVQFASITGPDTIRMRVWERGVGMTLASGSSSCAVAVAAARRGLTGR 237

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V + GG L I+W ++  V+MTG  +  + G L
Sbjct: 238 KVQVDLDGGRLEIDWREDG-VWMTGPTQHVFSGTL 271


>gi|153008262|ref|YP_001369477.1| diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188]
 gi|166225740|sp|A6WXE4|DAPF_OCHA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|151560150|gb|ABS13648.1| Diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188]
          Length = 300

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 153/286 (53%), Positives = 196/286 (68%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM G+GN+I+V DMRG  D IT +A   L+ D  T FDQIM IHD + A  D +I II
Sbjct: 7   FAKMNGLGNQIIVADMRGRADRITPEAAIRLAGDSETAFDQIMAIHDPRTAGTDNYIAII 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG+E Q+CGNG RCVV+ L +   R++FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 67  NCDGTEAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 126

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA  F         +GP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 127 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS E++DLRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 187 EHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVT 246

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
           V + GG L IEW D++HV MTG A+ E+ G  D  TG+W +  ++D
Sbjct: 247 VNVPGGPLRIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDAQND 292


>gi|91974994|ref|YP_567653.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5]
 gi|123749435|sp|Q13DT7|DAPF_RHOPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91681450|gb|ABE37752.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5]
          Length = 293

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/275 (45%), Positives = 170/275 (61%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T D   A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--LPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R + +   ++  TFET  G+L       DG  +VDMGEP   
Sbjct: 67  NNDGSEAGACGNGMRCVARQMFASTDKQGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           WK IPLA  F         IGP++   L  P VVSMGNPHAIF+V+ D+  +DL  FG L
Sbjct: 127 WKDIPLAEEFRDTRSIELQIGPIDAPLLHTPSVVSMGNPHAIFWVD-DIEAHDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L + +R V
Sbjct: 186 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L I W + +NHV MTG A  E+EG+ D
Sbjct: 246 EMTLPGGQLSIAWRESDNHVLMTGGATFEFEGRFD 280


>gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
 gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
          Length = 283

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/288 (30%), Positives = 132/288 (45%), Gaps = 16/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM GIGN  + ++          + I  L          D ++LI   + A  DA 
Sbjct: 1   MRFTKMHGIGNDYVYVNCFAEQLPAAPETIAPLVSDRHFGIGGDGLILITPSEVA--DAR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD------GSIS 117
           +R+ N DGSE + CGNG+RCV +++      K  T +   G  V     +        + 
Sbjct: 59  MRMFNADGSESEMCGNGLRCVAKYVFDHDIAKKETLKLETGAGVLTVQIETENGLARQVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL+ K IP     + +   +  I   +     +   VSMGNPH + FVE     
Sbjct: 119 VNMGQPILEGKKIPTIFDSNPVVNQKIEIAGQS----FDVTCVSMGNPHCVIFVEK-ATD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G  + +   F   VN+    V S   +  RTWERG G T ACG+ A A  VA  
Sbjct: 174 ELVLKIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAVCVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284
              +T R +   +LGG L +EW++ +N V+ TG A + + G+  +   
Sbjct: 234 LTGRTKRKILNHLLGGDLQLEWNEADNCVYKTGGATEVFTGEWMLPAL 281


>gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
 gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440]
          Length = 287

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 13  LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 72

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 73  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 132

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D    +        L +   VSMGNPHA+  V+ D+    + 
Sbjct: 133 PPRFIPAEIPFVA-----DAQALNYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVQTAPVH 186

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 187 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 246

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 247 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287


>gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 277

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 13/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++               +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFHEVVEDPVGLSKKISDRHFGVGSDGLILILPSEIA--DCKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118
           RI N DGSE Q CGNG+RCV +++     +++   T ET+ GI   +      R  S  V
Sbjct: 59  RIFNADGSEAQMCGNGIRCVAKYVYDHALVRKNPLTVETLAGIKTIELYTKNERVCSARV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P L    IP+  +  ++  +   +  +N         VSMGNPH + FV+ DL   
Sbjct: 119 NMGRPKLMRPEIPMVGAETQVVDE---MLVLNENTSFRVTCVSMGNPHCVIFVD-DLKQL 174

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  +  H +F E  N+   +V     + + TWERG G+T ACG+ A A  VA   
Sbjct: 175 HIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGASAVCVAGVL 234

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + T R +   + GG L +EW ++ +V+MTG A + + G+ 
Sbjct: 235 NNLTERKLLAHLPGGDLELEWVEDENVYMTGAAAEVFTGEW 275


>gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
 gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
          Length = 274

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 147/282 (52%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+      + +  A+           D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALEN-VDYSELAVKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R   K++  T ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMTVETLAGVIMPEVFVKNGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVE-SLDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K  +FS+G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G L +EW ++N ++++G+ ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274


>gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 274

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 142/282 (50%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +VI+      + +  A            D ++++        D  +R
Sbjct: 1   MKFTKMHGLGNDFIVIEALEN-VDYSELAAKLCDRHFGIGADGLLVVEPS--GIADIRMR 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119
           I N DGSE + CGNG RC  +++  R   K      ET+ G+++ +      +  S+ V 
Sbjct: 58  IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVKNGKVESVKVY 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG PI +   IP+     K   +   I    +        + +G PH I FVE  L    
Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVE-SLDENM 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L
Sbjct: 173 IKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            KT R V+V    G L +EW ++N ++++G+ ++ + G++++
Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274


>gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
          Length = 278

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +    A            D I+L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117
           RIIN DGSE + CGNG+RC  +++  R   K   F  ET+ GI+  +   +       + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    D  +              + MG PH + FV+ D+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPE---SDAINTSIEVEGKEYKITSLLMGVPHTVLFVD-DVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS 
Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIASN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T + V+V +  G L IEW D+  VFMTG A++ + G+
Sbjct: 235 LNGFTEKKVNVHLYFGMLEIEWQDDGTVFMTGPAEEVFVGE 275


>gi|32171422|sp|Q88CF3|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 276

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+V     DG +SVDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D    +        L +   VSMGNPHA+  V+ D+    + 
Sbjct: 122 PPRFIPAEIPFVA-----DAQALNYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVQTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276


>gi|170719431|ref|YP_001747119.1| diaminopimelate epimerase [Pseudomonas putida W619]
 gi|229813251|sp|B1J1W0|DAPF_PSEPW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169757434|gb|ACA70750.1| Diaminopimelate epimerase [Pseudomonas putida W619]
          Length = 276

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I    A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG + VDMG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQVCVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP        D    +        L +   VSMGNPHA+  V+ D+    + 
Sbjct: 122 PPRFIPAEIPFVA-----DEQALNYPLEVDGELHSIAAVSMGNPHAVLRVD-DIRTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F + VN    +V      +LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 GLGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
            +  VS+ + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPVSLDLPGGRLNIEWAGPGTSVLMTGPAVRVYEGQVRL 276


>gi|254438027|ref|ZP_05051521.1| diaminopimelate epimerase [Octadecabacter antarcticus 307]
 gi|198253473|gb|EDY77787.1| diaminopimelate epimerase [Octadecabacter antarcticus 307]
          Length = 271

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/275 (34%), Positives = 140/275 (50%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM G+GN  +VID R     +T   + A++       FDQ+ ++   + A  D  +
Sbjct: 9   VPFMKMHGLGNDFVVIDARDGVLRVTDAIVMAMADRHRGVGFDQLAVMK--KRADADVHL 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DG+   +CGN  RC+ R +     +   T  T RGIL+A++   G  S++MG P 
Sbjct: 67  TFYNADGTTAGACGNATRCIARHIMDETTKTDVTLTTDRGILLAQDAGGGMTSINMGLPQ 126

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W+ IPLAR  D                   P    MGNPH  FFVE D    DLA+ G
Sbjct: 127 LTWQEIPLARDVDLDAL----------PINGAPMATGMGNPHCTFFVE-DAEAIDLAAMG 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP++ +  N+  A +   + L +R WERGVG+T A GS++CA+ VA+     T R
Sbjct: 176 ALIEHHPIYPQRTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRKGLTGR 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +V + + GG + I+W D+  V+MTG     + G  
Sbjct: 236 SVRIDLDGGTIHIDWRDDG-VWMTGPTAHVFSGVW 269


>gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 276

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP     ++  R    +   N         VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPFEAP-EQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 276

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 LDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|86747485|ref|YP_483981.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2]
 gi|123409040|sp|Q2J390|DAPF_RHOP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86570513|gb|ABD05070.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2]
          Length = 293

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/275 (45%), Positives = 173/275 (62%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +T D   A++      +DQ+ML+   +    +AF+RI 
Sbjct: 9   FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV R L +   ++  TFET  G+L       +G  +VDMG P   
Sbjct: 67  NNDGSESGACGNGMRCVARQLFAGSDQQGLTFETRAGLLNCWRGPAEGLFTVDMGAPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P VVSMGNPHAIF+V+ D++ YDL  FG L
Sbjct: 127 WQDIPLAEEFRDTRGIELQIGPIDAPILHTPSVVSMGNPHAIFWVD-DIHAYDLGQFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A+ E+EG+ D
Sbjct: 246 EMTLPGGKLTIEWREGDDHVLMTGGAELEFEGRFD 280


>gi|27905004|ref|NP_778130.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839276|sp|P59582|DAPF_BUCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|27904402|gb|AAO27235.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 286

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 11/285 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59
           +S  + F+KM G+GN  ++I+        +TS+ I  LS       FDQ++L+ + ++ +
Sbjct: 8   KSVKIKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVN 67

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSIS 117
           +D   RI N +G+EV  CGNG RC   F+  +   K  T    T    L+     +G++ 
Sbjct: 68  IDFHYRIFNANGTEVSQCGNGARCFALFVLLKKLTKKRTLYVSTNTTTLILNVLNNGNVC 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P    K I      + +  +  H     +  + N  +VS+GNPH I +V ++L  
Sbjct: 128 VDMGVPCFKLKNI----FGENIIENSLHSIKFVNKII-NYDLVSIGNPHCIIYV-NNLKK 181

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y +   G  L+ H +F EG+N++   V S   + LR +ERGVG T ACGS ACASV    
Sbjct: 182 YPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASVALGI 241

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                   V V +L G L I W      ++MTG A   ++G   +
Sbjct: 242 QQGLLFNEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDGYFYL 286


>gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 276

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +     +                  VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFAPEDIPFQAA-----QQATRYSVEVDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276


>gi|254454521|ref|ZP_05067958.1| diaminopimelate epimerase [Octadecabacter antarcticus 238]
 gi|198268927|gb|EDY93197.1| diaminopimelate epimerase [Octadecabacter antarcticus 238]
          Length = 260

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/273 (35%), Positives = 140/273 (51%), Gaps = 15/273 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           KM G+GN  +VID R     +T   + A++       FDQ+ +I    DA  DA +   N
Sbjct: 2   KMHGLGNDFVVIDARDGVVRVTDAIVMAMADRHRGIGFDQLAVITKRDDA--DAHLTFYN 59

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS   +CGN  RC+ R++     +   T  T+RGIL+A +   G  S++MG+P L W+
Sbjct: 60  SDGSIAGACGNATRCIARYIMDETTKTDLTLTTVRGILLAHDAGGGMTSINMGQPQLTWQ 119

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPLAR  D                   P    MGNPH  FFVE D    DLA+ G L+ 
Sbjct: 120 EIPLARDVDLDAL----------PIDGAPMATGMGNPHCTFFVE-DAEEVDLAAMGALIE 168

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            HP++    N+  A +   + L +R WERGVG+T A GS++CA+ VA+     T R V +
Sbjct: 169 HHPLYPARTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRRGLTGRRVRI 228

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + GG + I+W ++  V+MTG     + G   +
Sbjct: 229 DLDGGTIHIDWRNDG-VWMTGPTAHVFSGVWYL 260


>gi|319785869|ref|YP_004145344.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464381|gb|ADV26113.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1]
          Length = 281

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 129/278 (46%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G GN  +V+D+R       +     L+        DQI+ I   + A   A  
Sbjct: 7   LRFSKMHGAGNDFVVLDLRDGSPPPDAALAARLADRHRGVGCDQILTIEPPRSAGAVAAY 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGS    CGNG RCV  +L      +  SF  ++  GI   +   DG  +VDMG 
Sbjct: 67  GIWNADGSPSGQCGNGARCVAAWLVRAGAARGESFVIDSPAGIHQVQALGDGRYAVDMGA 126

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P      +PLA    +       +     +F      VSMGNPHA+  V  D+   D+A 
Sbjct: 127 PRFAPAQVPLAGFGAEAAEYTLELDGRRVVFG----AVSMGNPHAVIEVG-DIDAVDVAG 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L     F + VN+  A+V +   + LR +ERGVG T ACGS ACA+V +     + 
Sbjct: 182 TGRALQASAAFPQSVNVGFAQVLAPGHIRLRVYERGVGETLACGSGACAAVASLVRRGRI 241

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            R  +V + GG L I W  ++  + M G A   +EG+ 
Sbjct: 242 AREATVSLPGGDLRIGWAGEDASIIMAGPAAFVFEGEW 279


>gi|332296028|ref|YP_004437951.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
 gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
          Length = 282

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 135/286 (47%), Gaps = 14/286 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  +++          +N    +            D ++L+   + A  D
Sbjct: 1   MKFYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPSEKA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGS---- 115
             +RI N DGSE + CGNG+RC  +             E     GI+V +  R       
Sbjct: 59  LKMRIFNADGSEAEMCGNGIRCFAKLAKDMNIVNKDKIEVETLAGIIVPEIIRSDDKNSL 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MG P L  + IP+   F+  D        +N     N   VSMGNPH + F++ D+
Sbjct: 119 IRVNMGTPNLKPESIPI-LGFEGKDSVINQRIQINDKTFLNVTCVSMGNPHCVIFMDYDI 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            ++ +      +     F +  N+  ARV S   ++LR WERGVG T ACG+ ACA+ VA
Sbjct: 178 KNFPIEGIAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGACATAVA 237

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +     TN  V++ + GG L IE+ + N+VFMT  A   +EG ++I
Sbjct: 238 AKLNGFTNGNVNIHLPGGILHIEY-ETNNVFMTATATLVFEGIIEI 282


>gi|237797830|ref|ZP_04586291.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020680|gb|EGI00737.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 276

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPTNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFAPQEIPFQAA-----EQASSYSVELDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGAKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276


>gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|123634628|sp|Q48C02|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 276

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   + ++  R    +   N         VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|307609174|emb|CBW98631.1| diaminopimelate epimerase [Legionella pneumophila 130b]
          Length = 277

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D       +T + I  L+       FDQ +LI   Q   +D   
Sbjct: 3   IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T   ++    N D S+SV+MG 
Sbjct: 63  RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVTTKTTLMDLIINEDNSVSVNMGV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IPL        +   +   +N+    N   +S+GNPHA+  VE ++    + S
Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + E ++LR +ERG G T ACGS A A+   +   +  
Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           +  ++V + GG L I+W      + +TG A   +EG L
Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275


>gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
 gi|149834042|gb|EDM89122.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
          Length = 280

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 18/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  + ++       N ++ A            D ++LI     A  D  +
Sbjct: 1   MKFTKMHGIGNDYVYVNCFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPSDVA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-------RDGSIS 117
            + N DGS+   CGNG+RCV ++                   +   +       +   + 
Sbjct: 59  DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTNISVATKSGIKYLDLTLGDDGKVALVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG PIL  + IP+  + +++  +  ++    +        VSMGNPHAI +++ DL +
Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVIDEPLNVDGTTYHI----TAVSMGNPHAIVYMD-DLRN 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+   G     H  F + +N    +V    +L +R WERG G T ACG+ ACA  VAS 
Sbjct: 174 LDIEKIGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                +    V+VK+LGG L I W+   + V+MTG A   ++G++ +
Sbjct: 234 LNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIFL 280


>gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A]
          Length = 271

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/281 (29%), Positives = 124/281 (44%), Gaps = 21/281 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TARIKFTKMHGTGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T+ GI + K   +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVS- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                          + D               +      VSMGNPH + F++ D+   +
Sbjct: 119 -------------TVTVDMGSPQETGEIDWGKKYPFQSTKVSMGNPHLVTFID-DITRIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
               R   V M GG + IEW +   H+ MTG A K ++G++
Sbjct: 225 GLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265


>gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|32171419|sp|Q88B09|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 276

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|163734416|ref|ZP_02141856.1| diaminopimelate epimerase [Roseobacter litoralis Och 149]
 gi|161392424|gb|EDQ16753.1| diaminopimelate epimerase [Roseobacter litoralis Och 149]
          Length = 277

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T     AL+       FDQ+ LI + +       +
Sbjct: 9   LPFMKMHGLGNDFVVLDARVRSIGVTPLFAQALANRHTGVGFDQLALITNTKTG---VHL 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+  ++ ++      T  T RG+L A    +G  SV+MG P 
Sbjct: 66  AFFNADGSVSSACGNATRCIADYIMAQTGASDVTLSTDRGVLAACRAANGQTSVNMGAPQ 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  +PLAR  D ++                P    MGNPH  FFV+ D    D+A  G
Sbjct: 126 LDWAEVPLAREMDTLEL----------PMKGAPTATGMGNPHCTFFVD-DAMQIDVAKLG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                H +F +  N+  A +T  + + +R WERGVG+T A GS++CA  VA+     T R
Sbjct: 175 AEFEHHELFPQRTNVQFASITGPDQIRMRVWERGVGITLASGSSSCAVAVAAARRGLTGR 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V + + GG L I+W D+  V+MTG  +  + G L
Sbjct: 235 KVQIDLDGGRLEIDWRDDG-VWMTGPTQHVFSGTL 268


>gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|6014917|sp|O05322|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens]
 gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 276

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 129/281 (45%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I V+MG
Sbjct: 62  YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRSDGQIGVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP                            VSMGNPHA+  V  D+    + 
Sbjct: 122 APRLVPADIPFQAPA-----QALSYQVDVDGATVELAAVSMGNPHAVLRV-ADINSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
 gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
          Length = 271

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 124/281 (44%), Gaps = 21/281 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D       +    AI           D ++LI     A  D
Sbjct: 2   TTRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T+ GI + K   +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVS- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                          + D               +      VSMGNPH + F++ D+   +
Sbjct: 119 -------------TVTVDMGSPQETGEIDWGKKYPFQSTKVSMGNPHLVTFID-DITRIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
               R   V M GG + +EW +   H+ MTG A K ++G++
Sbjct: 225 GLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEI 265


>gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
 gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
          Length = 284

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 15/288 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN---ITSDA---INALSTDDNTHFDQIMLIHDFQD 57
           +++ F K  G+GN  ++ID R        ++++    I+          D I+LI     
Sbjct: 2   TLIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILPP-V 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDG 114
           A  D  ++I N DGSE + CGNG+RC++R++    +      F  ET+ G +       G
Sbjct: 61  AGGDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAGKIQINIEE-G 119

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           +I VDMG PI   + IP     ++    +  I  ++  FL      SMGNPHAI  V   
Sbjct: 120 NIKVDMGSPIFAPEKIPTTLPINERGIPQGRITILDQDFL--VSACSMGNPHAIIEVPT- 176

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  L  +G  L  HP+F +  N+   +V S   +++  WERG G T ACG+ ACA + 
Sbjct: 177 IKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACACLA 236

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
               L K N  + VK+ GG L I W      +FM G+AK  + G  +I
Sbjct: 237 VLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGSFNI 284


>gi|146328927|ref|YP_001208979.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A]
 gi|146232397|gb|ABQ13375.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A]
          Length = 278

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 4/274 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F+KM G+GN  +V++      + T D I+AL+  +    FDQ++L+   + ++ D   RI
Sbjct: 6   FSKMHGLGNDFVVLNCLHLPFSWTKDDISALAHRNCGIGFDQLLLLEPPKSSAADFSYRI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV+ CGNG RC+ +++             ++            +        + 
Sbjct: 66  FNADGSEVEHCGNGARCLGKYIRDNGLFDFTRPAVVQTQKRTIIIDYCGVQNGSELFRVQ 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              +P    F  +                   +VSMGNPHA+  V+ D+    + + G+ 
Sbjct: 126 MG-VPDFSPFTTLQTSALAQPLSLAAGHFECGIVSMGNPHAVICVD-DVETAAVTAIGSA 183

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L +HP+F + VN+   ++ + E + LR +ERGVG T ACG+ ACA+V          + V
Sbjct: 184 LQQHPLFPQRVNVGFMQIINREHIRLRVFERGVGETLACGTGACAAVSVGIARGDLAQTV 243

Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            V + GG L+I+W  +   +FMTG A   + G++
Sbjct: 244 HVDLRGGSLIIDWAGEKEPLFMTGSATAVYHGQI 277


>gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
 gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
          Length = 284

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D       N    +    +       D ++LI     A  D
Sbjct: 2   TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    +      +   T +T+ GI + K +  G     
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178
           +   +      P+  ++D          P+    +R     VSMGNPH + FV +D+   
Sbjct: 120 VTVDMGIPSDEPV--NYDGKGSKPMTEHPIEIDGIRYTGTTVSMGNPHLVIFV-NDITKA 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL+S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 DLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             +  R   + M GG L IEW     HVFMTGEA K +EG+++
Sbjct: 237 TGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279


>gi|260771627|ref|ZP_05880547.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14]
 gi|260613404|gb|EEX38603.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14]
          Length = 261

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 128/265 (48%), Gaps = 10/265 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + + I  L+       FDQ++++    D   D   RI N DGSEV+ C
Sbjct: 1   MVVDCITQNVFFSPELIRRLANRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+  +     ++    T +G ++     D  + V+MG P  +   IP    
Sbjct: 61  GNGARCFARFVRMKGLTNKYSLSVSTKKGKIILSIEEDDQVCVNMGVPEFEPSKIPF--- 117

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                 ++ +I  V+   L     VSMGNPH +  VE D+   ++   G LL  H  F E
Sbjct: 118 -RAKQAEKTYIMRVDEQTLFCG-AVSMGNPHVVTVVE-DIATAEVERIGPLLESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
            VN    +V + + ++LR +ERG G T ACGS ACA+V         +  V+V + GG L
Sbjct: 175 RVNAGFMQVVNRQQINLRVYERGAGETQACGSGACAAVAVGILQDLLDDTVTVNLPGGRL 234

Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKL 279
            I W      ++MTG A   ++G+L
Sbjct: 235 EISWQGPGQPLYMTGPATHVFDGQL 259


>gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
 gi|169292132|gb|EDS74265.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
          Length = 277

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + +D       +  + I  +S        D +++I        D  +
Sbjct: 3   LHFTKMEGLGNDYIYVDGINQDVCMDKEFIKKISDRHFGIGSDGMIVILPSDK--YDFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISV---- 118
           R+ N DGSE + CGNG+RC  +F+             ET  G+ + +   DG   +    
Sbjct: 61  RMFNLDGSEGKMCGNGIRCFAKFIYDHKLSDKHVLEIETKAGLRIVELLFDGDKCIGAKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+PIL    IP   + + M      I    +    N   +SMGNPH + FV+ DL   
Sbjct: 121 DMGKPILTCSDIPCNYNQETMIDQTIVIDDYKY----NLTSISMGNPHTVTFVD-DLETL 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G     H MF EGVN     V +   + +R WERG G T ACG+ ACA++ AS  
Sbjct: 176 DLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAMYASYL 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + T   V+V++LGG L IE+  N+ + M+G A   +EG +++
Sbjct: 236 NNYTKNKVTVELLGGCLEIEYI-NDTIMMSGPAVNVFEGTIEV 277


>gi|170741816|ref|YP_001770471.1| diaminopimelate epimerase [Methylobacterium sp. 4-46]
 gi|229807516|sp|B0UCI8|DAPF_METS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|168196090|gb|ACA18037.1| Diaminopimelate epimerase [Methylobacterium sp. 4-46]
          Length = 293

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/277 (43%), Positives = 164/277 (59%), Gaps = 4/277 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+I+V+D+R     +  +   A++ D  + FDQ+M++HD      DA +RI
Sbjct: 8   RFLKMNGLGNEIVVLDLRASSHVVRPEEARAIAADPRSRFDQLMVLHDPVTPGTDARLRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSE  +CGNG RCV   +          +  T E+  G+L      D   +VDMG 
Sbjct: 68  YNRDGSESGACGNGTRCVAWAMRADPVMGRAGEQLTLESAAGLLAVTRVSDTDFTVDMGP 127

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPL+  F    R    IGP++   L +P VVSMGNPHA+FFV+ D   YDL  
Sbjct: 128 PHLRWDEIPLSEPFPDTRRIELQIGPIDAPILHSPGVVSMGNPHAVFFVDRDPETYDLGR 187

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F E  N+S+A+V + + + LR WERG GLT ACGSAACA++VA+  L  T
Sbjct: 188 IGPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLT 247

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R  +V + GG L+I W +++HV MTG  + EWEG+ 
Sbjct: 248 GRRATVTLPGGDLVIAWGEDDHVRMTGPTELEWEGRF 284


>gi|310828902|ref|YP_003961259.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612]
 gi|308740636|gb|ADO38296.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612]
          Length = 292

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/285 (29%), Positives = 127/285 (44%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  +VID       + +  I A+         D ++L+   +    D  +
Sbjct: 1   MNFTKMQGAGNDFIVIDNMDQSIELPAPLIEAMCRPHFGIGADGLILVEPSES--CDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGS----IS 117
              N DGS  + CGNG+RC+ ++          K F  ET  G +  +          I 
Sbjct: 59  NYYNQDGSIAEMCGNGVRCLAKYAADAGIVDASKPFEVETRAGKIGVQVLESYRGVSTIR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG      + IP+      +  ++         +       SMGNPH    VE ++  
Sbjct: 119 VSMGSVSFQTQDIPVISDKTTLLGEKITYKDRELTYG----CASMGNPHMAVLVE-NVDS 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G    KHPMF    N+S A V S +S+ + TWERGVG T ACG+  CA+V    
Sbjct: 174 FPIEEVGPYFEKHPMFPNKCNISFAEVISHDSIAMDTWERGVGRTLACGTGTCATVAVLH 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +      V   + GG L+IE  D + VFMTG AK  + G  +++
Sbjct: 234 RMGLVGNKVHACLSGGDLVIEL-DGSAVFMTGPAKVVFRGTYEMQ 277


>gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 276

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + IP   +           G    L       VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRLVPEEIPFQTAEQAKSYSLDVDGQSVELA-----AVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 278

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +    A            D ++L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R   K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVFERGIVKATKFKVETLAGIIEPELFINEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+         +   +   N   +     + MG PH I FV+ DL  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPKSDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DLEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L IEW ++  VFMTG A++ + G+
Sbjct: 235 LNGLTERKANVHLYFGILEIEWREDGIVFMTGPAEEVFVGE 275


>gi|304310447|ref|YP_003810045.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
 gi|301796180|emb|CBL44386.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
          Length = 279

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 128/277 (46%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D      ++ S+ I  L+       FDQ++++    +  VD   
Sbjct: 8   LAFTKMHGLGNDFMVLDATRAPIHLDSEQIRRLADRHFGVGFDQLLVVESATNPEVDFNY 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEP 123
           RI N DG EV+ CGNG RC  RF+  +   +           + + N  G  + VDMG P
Sbjct: 68  RIFNADGGEVEQCGNGARCFARFVHEKGLTQKNPVRVSTKAGIIQLNLQGDFVQVDMGVP 127

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               K IP + + D                     VV+MGNPHA+  V  ++    +A  
Sbjct: 128 KTSPKEIPFSAATD-----EIFHFLKVGDQTLTISVVNMGNPHAVLQVS-NVETAPVAQI 181

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G ++  HP F   VN+    V S   + LR +ERG G T ACG+ ACA+ VA       +
Sbjct: 182 GPMIESHPSFPARVNVGFMEVVSRNHIKLRVFERGAGETLACGTGACAAAVAGIRAGLLD 241

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             V V++ GG L I+W      V M G A K +EG  
Sbjct: 242 SPVKVELAGGELQIQWAGIATSVIMEGPATKVYEGFW 278


>gi|330952169|gb|EGH52429.1| diaminopimelate epimerase [Pseudomonas syringae Cit 7]
          Length = 276

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A    +      FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGARHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPFEAA-----EQATCYTVDVDGQSIEMAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|27375588|ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110]
 gi|32171443|sp|Q89X45|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|27348725|dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110]
          Length = 291

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 126/276 (45%), Positives = 172/276 (62%), Gaps = 4/276 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRI 66
           FAKM GIGN+I+V+DMR     +T D   A+++      +DQ+M++   +    +AFI I
Sbjct: 9   FAKMNGIGNEIVVVDMRDSTAKVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISI 68

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPIL 125
            N DGSE  +CGNGMRCVVR +  +  + + TFET  G+L A +       +VDMG P  
Sbjct: 69  YNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPAPDLYTVDMGVPKF 128

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA  F         IGP+++  L +P VVSMGNPHAIF+V+ D+  YDLA FG 
Sbjct: 129 GWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWVD-DVNAYDLARFGP 187

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +  R 
Sbjct: 188 LLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATAVAAARLKRAERN 247

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           V + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 248 VEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFD 283


>gi|153953828|ref|YP_001394593.1| diaminopimelate epimerase [Clostridium kluyveri DSM 555]
 gi|219854444|ref|YP_002471566.1| hypothetical protein CKR_1101 [Clostridium kluyveri NBRC 12016]
 gi|146346709|gb|EDK33245.1| DapF [Clostridium kluyveri DSM 555]
 gi|219568168|dbj|BAH06152.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 274

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 141/284 (49%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +VID R           A+   +       D ++++ +   AS+   
Sbjct: 1   MKFTKMHGTGNDFIVIDDRENRFLGKEEELALRLCNRHFGIGADGVLIVRNSDIASI--K 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++      K    +   G  +       K  +   I+
Sbjct: 59  MVIINSDGSYASMCGNGIRCFAKYIWEENLVKDKILKIETGDGIKEAVVTIKNGKAEEIT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG P    + +P+    + ++++         +       + MG PH + F +  L  
Sbjct: 119 IDMGMPSFAPRKVPVEFKEEVIEKEVKIKNKNYIITT-----LFMGVPHTVIFGK--LED 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+A  G  + K+P+F++G N++   + + + + ++TWERG G T ACG+ +CA VVA+ 
Sbjct: 172 YDVAE-GEYIEKYPVFTQGTNVNFCEIVNEKEVKVKTWERGAGPTLACGTGSCACVVAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +  T + V V + GG LL+E  D+N VFMTG A   ++G+ DI
Sbjct: 231 KIGLTGKEVKVSVPGGILLVEIKDDNSVFMTGPAAISFKGEYDI 274


>gi|329904565|ref|ZP_08273871.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547925|gb|EGF32675.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480]
          Length = 285

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 7/283 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +VID      N+T      L+        DQI+++     A +D   
Sbjct: 3   IKFTKMHGAGNDFIVIDAINQTINLTPVQWRQLADRRFGIGADQILVVEASGIADIDFRY 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV+ CGNG R  VRF+T +    +      T+ G++V +   DGSI+VDMG 
Sbjct: 63  RIFNADGGEVEQCGNGARAFVRFVTEKKLTSKSVLRVATMNGVIVPRLEADGSITVDMGA 122

Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           P+     +P   +      D +        +       V+SMGNPHA+  V+  +    L
Sbjct: 123 PVFAPARVPFDTTGLDSIADAEEALWPLQINDRTVMMSVLSMGNPHAVQIVDA-VETAGL 181

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A  G  +  H  F   VN    ++    ++ LR +ERG G T ACG+ ACA+ VA     
Sbjct: 182 ALDGPAIEHHVRFPNRVNAGFMQILDRHAIRLRVFERGAGETLACGTGACAAAVAGIRRG 241

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
           + +  V V+  GG L I W    +HV ++G A   +EG++ + 
Sbjct: 242 QLDTPVRVETRGGQLSIAWEGGASHVMLSGPAVTVFEGEITLP 284


>gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
 gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
 gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
          Length = 276

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+  +   DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  +P F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
 gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
          Length = 276

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRSDGQISVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP   +                    +   VSMGNPHA+  V +D+ +  + 
Sbjct: 122 APRLVPADIPFEAT-----EQAVSYALDVDGKTVDIAAVSMGNPHAVLRV-NDINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            +G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 EWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276


>gi|227823741|ref|YP_002827714.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234]
 gi|227342743|gb|ACP26961.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234]
          Length = 306

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 148/291 (50%), Positives = 190/291 (65%), Gaps = 1/291 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA+I 
Sbjct: 10  VQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPRAPGTDAWID 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+N DGS  Q+CGNG RCVV+ L +   +K+F F T+ G+L A+E+ DG ISVDMG P  
Sbjct: 70  IVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLISVDMGSPRF 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLA  F    R    IGP++   L +P V SMGNPHAIF+VE+D++ Y+L  FG 
Sbjct: 130 GWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+SIA V S + +DLRTWERG GLT ACGSAACA+ V+     +T+R 
Sbjct: 190 LLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTDRI 249

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
           V+V + GG L IEW + ++HV MTG A+ EW G +D  TG + +       
Sbjct: 250 VTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATGAFERDAAATSE 300


>gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
 gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
          Length = 305

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 27/301 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D      DN +  AI+          D ++LI +   A  D F+
Sbjct: 7   MKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA--DFFM 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117
            + N DGS+ Q CGNG+RCV +F+       + + T +T+ G+ + +     + +  +  
Sbjct: 65  EMYNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETAR 124

Query: 118 VDMGEPILDWKLIPL--------------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           V+MG PIL+   IP+                +   +         V          VSMG
Sbjct: 125 VNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTAVSMG 184

Query: 164 NPHAIFFVEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           NPHAI +++ D+    +++   G     H  F E +N    +V    +L++R WERG G 
Sbjct: 185 NPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWERGSGE 244

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           T ACG+ ACAS+VA+      +   ++ +LGG L I W  + N V++ G AK  + G++D
Sbjct: 245 TLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVD 304

Query: 281 I 281
           I
Sbjct: 305 I 305


>gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101]
          Length = 395

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           + F+K +G+GN  L++D R   D      +T + +  L         D ++L     +  
Sbjct: 16  LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGVGGDGVILALPANNGG 75

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSI 116
            +  +RI N DG+E + CGNG+RC+ RFL  R      +++  +T+ G +V +   DG+I
Sbjct: 76  -ELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTLAGRIVPELLPDGTI 134

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG P L    +P           +  +     +F        MGNPH +  V   + 
Sbjct: 135 RVDMGAPFLHSDQVPTTLPVGAAGLPQGELDVDGEVF--AVAAAGMGNPHVVIPVPL-VE 191

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL  FG LL  HP F    N+   +V S + L +R WERG G T ACG+ ACA++V+ 
Sbjct: 192 EIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERGAGPTLACGTGACATLVSC 251

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             L   +R   + + GG L I W   +  VFM G A+  ++  +
Sbjct: 252 HSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAEHVFDAVI 295


>gi|265764282|ref|ZP_06092850.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16]
 gi|263256890|gb|EEZ28236.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16]
          Length = 269

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 21/285 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + ++            AI   +       D ++LI     A  D
Sbjct: 2   ARAIQFTKMHGTGNNYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+    +      +   T +T+ GI + + + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                          + D            +  F      VSMGNPH + FV+ D+   +
Sbjct: 119 -------------TVTVDMGIPLETGTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRIVN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L+  G  L KHP+F +  N+  A++T   ++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLT 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283
            +T R V+V M GG L IEW +   H+ MTG A K ++G ++++ 
Sbjct: 225 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 269


>gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5]
          Length = 276

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 134/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047]
          Length = 261

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 123/267 (46%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +VID+   +  +    I           FDQ++++   Q    D   RI N DGSEV+ C
Sbjct: 1   MVIDLVSQYVKLKPHLIPRWADRHFGIGFDQLLVVEPPQSPKADFRYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC   F+  +    +K    ET  G++      +  ++VDMG P L    IP    
Sbjct: 61  GNGARCFALFVRDKKLTNKKHLIVETKGGVIELHVTNNNEVTVDMGVPTLQPSKIPFEAK 120

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                          +    +   VSMGNPH +  VE D+   D+ + G L+  H  F +
Sbjct: 121 -----EQAISYIIDINGQPLDISAVSMGNPHGVTLVE-DVKTADVETLGPLVEGHSRFPQ 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
             N    ++ S   + LR +ERG G T ACG+ ACA+VVA         +V+V + GG L
Sbjct: 175 RTNAGFMQIISPSEIRLRVYERGAGETLACGTGACAAVVAGRLRGLLEESVTVHLPGGSL 234

Query: 256 LIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            I W  +   V MTG  KK +EG++ +
Sbjct: 235 NIVWPGEGQPVKMTGPCKKVFEGRIYL 261


>gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
 gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
          Length = 269

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 128/281 (45%), Gaps = 18/281 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + I+          + A+           D ++LI        D  +
Sbjct: 1   MKFTKMQGTGNDYVYINCFEETVERPEELAVKVSDRHFGIGSDGLILICPS--GQADCRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           ++ N DGSE + CGNG+RCV    +    +++K F  ET  GI   K   +G        
Sbjct: 59  KMFNADGSESEMCGNGIRCVGKFVYDHHIVEKKEFDVETKAGIKHLKVTDEGG------- 111

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                 LI +     ++  D      V+         +SMGNPHAI++++ ++   DL +
Sbjct: 112 ---KAALITVDMGIPEVTGDVPEPIVVDGRSYE-FIGISMGNPHAIYYMD-EIDDLDLEA 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H  F E  N    +V     L +R WERG G T ACG+ A AS VAS    +T
Sbjct: 167 IGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATASAVASVLSGRT 226

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
              V V++ GG L I W  ++ HV+MTG A + ++G+   +
Sbjct: 227 ENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGEFQPE 267


>gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
 gi|225209149|gb|EEG91503.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
          Length = 275

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 94/283 (33%), Positives = 137/283 (48%), Gaps = 16/283 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G+GN  + I+               L         D ++LI   + +  D  
Sbjct: 1   MI-FTKMHGLGNDYVCINCFRERVEDPPGFARTLCDRHYGIGADGLILICPSKVS--DFK 57

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG----ILVAKENRDGSIS 117
           + I N DGS    CGNG+RC+    +      +++ + ET  G     L  ++ +     
Sbjct: 58  MEIYNSDGSVAGMCGNGIRCLGKYVYDYRLTGKETLSIETKSGIRNMHLHIQDGKACGAM 117

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+   IP+    D +  D   +   N+        +SMGNPHA+ F+E ++  
Sbjct: 118 VDMGVPRLNAHSIPILSEKDLVINDPIEVQKKNYRMTG----ISMGNPHAVIFLE-EING 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L   G  L  HP F E  N+    VT+ + +++R WERGVG T ACG+ ACA+VVAS 
Sbjct: 173 ISLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAVVASV 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
               T+  V VK+LGG L + W    NHVF+ G A K ++G L
Sbjct: 233 LNDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDGVL 275


>gi|237713579|ref|ZP_04544060.1| diaminopimelate epimerase [Bacteroides sp. D1]
 gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
 gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
 gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
 gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22]
 gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1]
 gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
 gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
 gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
 gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22]
          Length = 271

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 122/278 (43%), Gaps = 21/278 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D       +    AI           D ++LI     A  D  +
Sbjct: 5   IKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGNG RCV    +      +   T +T+ GI + K   +G        
Sbjct: 63  RIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVS---- 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                       + D               +      VSMGNPH + F++ D+   +L  
Sbjct: 119 ----------TVTVDMGSPQETGEIDWGKKYPFQSTKVSMGNPHLVTFID-DITRINLPE 167

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  HP+F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA+      
Sbjct: 168 IGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAFINGLA 227

Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
            R   V M GG + IEW +   H+ MTG A K ++G++
Sbjct: 228 GRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265


>gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 276

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDADGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|299133085|ref|ZP_07026280.1| diaminopimelate epimerase [Afipia sp. 1NLS2]
 gi|298593222|gb|EFI53422.1| diaminopimelate epimerase [Afipia sp. 1NLS2]
          Length = 290

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 122/275 (44%), Positives = 170/275 (61%), Gaps = 3/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R     +++    A++  +   +DQ+M++   + A   AFIRI 
Sbjct: 9   FAKMNGIGNEIVVVDLRKSDSQVSAAEARAVAAPNGVPYDQLMVLQKPKLAGTSAFIRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV + +      ++ TFET  G+L   +       +VDMG P   
Sbjct: 69  NNDGSEAGACGNGMRCVAKRVFGENGERAATFETRAGLLNCWQGPSPDLYTVDMGAPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         +GP++   L +P VVSMGNPHAIF+V+ D+  YDL  FG L
Sbjct: 129 WQDIPLAEEFRDTRYIELQVGPIDSPVLHSPSVVSMGNPHAIFWVD-DIDAYDLERFGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +   + + +RTWERG GLT ACGSAACA+ VA+  L +TNR V
Sbjct: 188 LENHPIFPERANITLAHIVDRDHIRMRTWERGAGLTKACGSAACATAVAAARLKRTNRIV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L IEW + ++HV MTG A  E+EG  D
Sbjct: 248 QMSLPGGDLTIEWRERDDHVLMTGAAVLEYEGVFD 282


>gi|57238764|ref|YP_179900.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
 gi|57160843|emb|CAH57741.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
          Length = 265

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 138/275 (50%), Gaps = 10/275 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M++F KM G  N  ++ID R    +   +             DQ+++I   + A  D FI
Sbjct: 1   MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG P 
Sbjct: 58  HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             WK IP+    D +        P+    L  P  V++GNPHA+FFV+  +    L   G
Sbjct: 118 FHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFVD-SIDDIPLTKIG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + TN 
Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ++ + GG LLI + D+N + M G     + G +
Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265


>gi|126727810|ref|ZP_01743640.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150]
 gi|126702937|gb|EBA02040.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150]
          Length = 278

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 97/273 (35%), Positives = 138/273 (50%), Gaps = 16/273 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +VID RG    +T     AL        FDQ+  I      + D  +  
Sbjct: 12  FMKMHGLGNDFVVIDSRGRDAVVTEKLARALGDRNRGVGFDQLAEIR--DGVTSDVILDF 69

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RCV  FL  +      +  T RG+L AK      +S++MG P LD
Sbjct: 70  WNSDGSRAGACGNATRCVSEFLMRQAGTGELSLTTERGLLRAKW-SGDLVSINMGLPQLD 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ +PLAR                     +P  V MGNPH +FFV+ D+   D A  G  
Sbjct: 129 WQDVPLARDVPVDHL----------PIDGDPVAVGMGNPHCVFFVD-DIADVDPAIAGPP 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +  H +F E  N+  A+V S + + +R WERG G+T ACGS ACA+ VA+     T++ V
Sbjct: 178 IENHELFPERCNVEFAQVRSRDEIRMRVWERGTGITLACGSGACATAVAAHLRGLTDKCV 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +++ GG L ++W D+  V+MTG     ++ +L
Sbjct: 238 RMEVDGGWLTLDWRDDG-VWMTGPTAHVFDARL 269


>gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
 gi|75503931|sp|Q500B6|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|63254160|gb|AAY35256.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
 gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 276

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +                    +   VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPFEAA-----EQATCYTVDVDGQHVDMAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|239833058|ref|ZP_04681387.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
 gi|239825325|gb|EEQ96893.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
          Length = 318

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 151/284 (53%), Positives = 196/284 (69%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM G+GN+I+V DMRG  D IT +A   L++D  T FDQIM IHD + A  D +I II
Sbjct: 25  FAKMNGLGNQIIVADMRGRADRITPEAAIRLASDSETAFDQIMAIHDPRTAGTDNYIAII 84

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           NCDG++ Q+CGNG RCVV+ L +   R++FTFET  GIL A E+ DG ISVDMG+P  DW
Sbjct: 85  NCDGTQAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 144

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + IPLA  F         +GP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG LL
Sbjct: 145 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 204

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+SIA VTS E+++LRTWERG GLT ACGSAACA+ V++    +T R V+
Sbjct: 205 EHHPIFPERANISIAEVTSPETMNLRTWERGAGLTRACGSAACAAAVSAARTRRTGRTVT 264

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V + GG LLIEW D++HV MTG A+ E+ G  D  TG+W +  +
Sbjct: 265 VNVPGGPLLIEWRDDDHVIMTGPAEWEFSGIFDPATGEWSRDAQ 308


>gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
 gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
          Length = 278

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +    A            D ++L+ +   A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R   K+  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    K IP+    +    +   +   N   +     + MG PH I FV+ D+  
Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DVEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH  F    N++  +V    ++ +RTWERG G T ACG+ +CASV+AS 
Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIASN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               T R  +V +  G L IEW ++  VFMTG A++ + G+
Sbjct: 235 LNGFTERKANVHLYFGILEIEWQEDGIVFMTGPAEEVFVGE 275


>gi|254881595|ref|ZP_05254305.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
 gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
 gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
          Length = 280

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 8/282 (2%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++       +    A    +       D ++LI   + A  D
Sbjct: 2   ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSAYHTGIGADGLVLIGVSEKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+ +++  +    ++  T ET+ GI + K +    +  D
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +   +    L+                  +          V MGNPH + FV+ D+   D
Sbjct: 120 VTVDMGTP-LLSNPGQIATKTGGMLAETILADGKEYKGTFVCMGNPHVVIFVD-DIKEVD 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G  L  HP+F E  N+    +   +SL +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 178 LPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAVAAVLN 237

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           HK  R   V+M GG L I W + + HV+MTG A K +EG+++
Sbjct: 238 HKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEIE 279


>gi|220920231|ref|YP_002495532.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060]
 gi|254767114|sp|B8I9H6|DAPF_METNO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219944837|gb|ACL55229.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060]
          Length = 293

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 124/277 (44%), Positives = 164/277 (59%), Gaps = 4/277 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+I+V+D+RG    +      A++ D  + FDQ+M++HD   A  DA +RI
Sbjct: 8   RFLKMNGLGNEIVVLDLRGTPHIVQPQEARAIAADPRSRFDQLMVLHDPVTAGTDAALRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            N DGSE  +CGNG RCV   +          +  T ++  G+L          +VDMG 
Sbjct: 68  YNTDGSESGACGNGTRCVAWAMLEDPVMGRPAERLTLQSRAGLLAVTRVSATDFTVDMGP 127

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L W  IPLA  F    R    IGP++   L +P VVSMGNPHA+FFV+ D   YDLA 
Sbjct: 128 PRLRWDEIPLAEPFPDTRRIELQIGPIDDPILHSPGVVSMGNPHAVFFVDRDPASYDLAR 187

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F E  N+S+A+V   E + LR WERG GLT ACGSAACA++VA+  L  T
Sbjct: 188 IGPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLT 247

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            R   V + GG L+I+W +++HV MTG  + EWEG L
Sbjct: 248 GRRAVVTLPGGDLVIDWGEDDHVRMTGPTELEWEGTL 284


>gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 276

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPDEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 QLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
 gi|123602830|sp|Q3K4R8|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
          Length = 276

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 91/281 (32%), Positives = 129/281 (45%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H +I                FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  GI+      DG I V+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP                        +   VSMGNPHA+  V  D+    + 
Sbjct: 122 APRLVPADIPFQAP-----EQALSYQVDVDGTPVDLAAVSMGNPHAVLRVS-DINTAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+   +V       LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276


>gi|58616748|ref|YP_195947.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel]
 gi|58416360|emb|CAI27473.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel]
          Length = 265

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 10/275 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M++F KM G  N  ++ID R    +   +             DQ+++I   + A  D FI
Sbjct: 1   MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG P 
Sbjct: 58  HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             WK IP+  + D +        P+    L  P  V++GNPHA+FFV+  +    L   G
Sbjct: 118 FHWKDIPVLHACDTL------YLPIKTELLSYPVGVNIGNPHAVFFVD-SIDDIPLTKIG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + TN 
Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ++ + GG LLI + D+N + M G     + G +
Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265


>gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
 gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
 gi|166224242|sp|A6L7E5|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
 gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
          Length = 280

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 8/282 (2%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM+G GN  + ++       +    A    +       D ++LI   + A  D
Sbjct: 2   ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSTYHTGIGADGLVLIGASEKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+ +++  +    ++  T ET+ GI + K +    +  D
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +   +    L    +   K         P +    +    V MGNPH + FV+ D+   D
Sbjct: 120 VTVDMGTPLLSNPGQIATKTGGMLAETIPADGKEYK-GTFVCMGNPHVVIFVD-DIKEVD 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L + G  L  HP+F E  N+    +   +SL +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 178 LPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAVAAVLN 237

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
           HK  R   V+M GG L I W++ + HV+MTG A K +EG+++
Sbjct: 238 HKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEIE 279


>gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 279

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDA-INALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K  G+GN +++I  R  +  + + +  +           D ++        + D  
Sbjct: 3   IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPG-IGNTDYT 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119
           +RI+N DGSE Q CGNG+RC+ R +          K+++  T  G++  +   +G + VD
Sbjct: 62  MRILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVD 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P L    IP        +    +        L     VSMGNPH I FVE D    D
Sbjct: 122 MGTPYLFAHEIPTTLG--NPNETVINKPLAVAGKLWLVTCVSMGNPHCITFVE-DASAID 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           LA  G     H MF E +N     V   + L +R WERG G T ACG+ ACASVVA    
Sbjct: 179 LAVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLT 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
               R  +V++ GG L+IEW + +N ++MTG+A+  + G 
Sbjct: 239 ENCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGS 278


>gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
 gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
          Length = 280

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 16/282 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KMEGIGN  + ID       +    I  +S        D +++I + +    D  
Sbjct: 1   MLKFTKMEGIGNDYIYIDGIHQDVPMNPHFITKISDRHFGIGSDGVIVIQESEI--CDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117
           +R+ N DGSE + CGNG+RC  +F+      K    E        +  L+   N+   + 
Sbjct: 59  MRMFNLDGSEGKMCGNGIRCFAKFVYDHQLTKKTYLEIETLGGIKKVWLIIDNNKVQYVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+PIL  K IP     ++M  +   +    +        +SMGNPH + ++      
Sbjct: 119 VNMGQPILKSKEIPCLFDKEEMINEPIEVDGQVYYLTS----LSMGNPHTVIYMNH--LD 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +++   G    KH +F E VN     V + + L +R WERG G T ACG+ ACA + AS 
Sbjct: 173 FNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAVMYASY 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                +  V V++LGG L I + +N  ++M+G A   +EG +
Sbjct: 233 INGLCDNHVQVELLGGILDISY-ENGEIWMSGPATTVFEGII 273


>gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4]
 gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4]
          Length = 279

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 122/281 (43%), Gaps = 13/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN  +V+  R    +    A            D ++ I   +    D  +R
Sbjct: 1   MHFVKMHGLGNDFVVVMARTLPPDTPELARKVCRPHFGVGADGLVFILPSE--EADITMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISVD 119
           I N DGSE + CGN +RCV +                 G  +       K+ +  S +VD
Sbjct: 59  IFNADGSEAEMCGNAIRCVAKLAYETRLIPYQRMRIATGAGIKPVELTVKDGKVVSCTVD 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MGEPIL+   IP+     K+  +           +     +S GNPH + FV   +    
Sbjct: 119 MGEPILERSAIPMQGPPGKVVNEPLI---FEDGLVLRVTALSFGNPHCVLFVPA-VEEAP 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G  L  HP F    N+    V     + +R WERGVG T ACGS ACA+ VAS   
Sbjct: 175 VEELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAAAVASILN 234

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
             T R + V + GG L I W  ++ HV++ G A   ++G+ 
Sbjct: 235 GYTAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGEW 275


>gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
          Length = 277

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G + + T  AI           D ++++      + D  +
Sbjct: 1   MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPS--NTCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGNG+RC     +    + + +FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P  + K IP+  + DK+      +    +        V +G PH   FV+ D+   
Sbjct: 119 DMGKPFFNSKDIPMNVTMDKV----IDVDLDVNGETVTVSSVLLGVPHTEVFVD-DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V +   + +RTWERG G T ACG+ +CAS + S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSCASAIMSHE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I+
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277


>gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 276

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L  + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVELAAVSMGNPHAVLRVD-DINNVPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276


>gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 277

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G   + T  AI           D + ++   +  + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPKGTEKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGN +RC     +      +++FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P    + IP+    DK+      +    +        V +G PH   F++ D+   
Sbjct: 119 DMGKPFFKSQDIPMNVDMDKV----IDVDLDVNGETVTVSSVLLGVPHTEVFID-DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS V S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|88705497|ref|ZP_01103207.1| Diaminopimelate epimerase [Congregibacter litoralis KT71]
 gi|88700010|gb|EAQ97119.1| Diaminopimelate epimerase [Congregibacter litoralis KT71]
          Length = 269

 Score =  205 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 120/275 (43%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  ++ID       +    I  ++        DQ++L+        D   RI N 
Sbjct: 1   MHGAGNDFVMIDTISQRIKLRPRDIRRIADRRRGVGCDQVLLVEPPGQPEADFRYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGNG RC  RF          +   E    ++  +   +  + VDMG P+   
Sbjct: 61  DGSEAGQCGNGARCFARFVRHRRLTHLTTMVVEAGSSLMTLRLRENHEVEVDMGAPLFTP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP  R+    + +    G           V+SMGNPHA+  V +D+    L   G  +
Sbjct: 121 ADIPFRRAETAPEYELTAAG-----ETLRVGVLSMGNPHAVLRV-NDVNDGSLERLGEAI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             H  F E  N     V     + LR +ERGVG T ACGS ACA+VV    +   +  V+
Sbjct: 175 RSHEDFPEETNAGFLEVVDRTHVRLRVFERGVGETEACGSGACAAVVYGRRMGWLDDRVT 234

Query: 248 VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           V++ GG L I+W  ++  V MTG     +EG + +
Sbjct: 235 VELTGGKLHIQWQGDDSSVLMTGPTAISFEGTIRL 269


>gi|298489347|ref|ZP_07007361.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 276

 Score =  205 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   + ++  R    +   N         VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+    V   +   LR WER  G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|213581094|ref|ZP_03362920.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 246

 Score =  205 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ ++    + +
Sbjct: 121 PNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234

Query: 243 NRAVSVKMLGG 253
              V V++ GG
Sbjct: 235 AEEVRVELPGG 245


>gi|315924517|ref|ZP_07920738.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622221|gb|EFV02181.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 279

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 15/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  +V++        +   I  L         D ++L+    + +  AF+
Sbjct: 1   MKFLKMHGAGNDFIVVNNLDKSMMFSQKQIAQLCDRHKGIGADGLILVEPSNEDA--AFM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
              N DG+  Q CGNGMRC+ +++T R  +K+  FT  +  G +  +  +       I V
Sbjct: 59  DYYNADGTIAQMCGNGMRCLAKYVTDRQIVKKTQFTIASRAGRIGIELLKRTPAESTIRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG  +   + IP+    +++    F    V +    +    SMGNPH +  +  D    
Sbjct: 119 DMGNVVFSAQKIPVISKKEEVIGAHFDWDGVTY----SYGCASMGNPHMVV-LTGDFDQT 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G    KH MF E  N+S A V     + + TWERG G T ACG+  CA+V     
Sbjct: 174 PIEAIGPYYEKHAMFPENCNISFAEVKDTNHIRMDTWERGDGRTLACGTGTCATVAVLHR 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           L K + AV  ++ GG L +E  D +HV+MTG A+  +EG +D++  
Sbjct: 234 LGKVDTAVEAQLSGGILSVEL-DGSHVWMTGPAQTVYEGSVDVEAL 278


>gi|154244368|ref|YP_001415326.1| diaminopimelate epimerase [Xanthobacter autotrophicus Py2]
 gi|154158453|gb|ABS65669.1| Diaminopimelate epimerase [Xanthobacter autotrophicus Py2]
          Length = 290

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 107/280 (38%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+ILV+D+R     + + A  AL+      FDQ M+++  +     AF+RI
Sbjct: 13  PFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRI 72

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DGS   +CGNG RC+      R       FE+  G+L      DG + VDMG P  D
Sbjct: 73  LNSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFD 132

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLAR       +   +       L    +VSMGNPHA+FFV  D    D+   G  
Sbjct: 133 WRDIPLARDV----AETAQVIVPGFEALGPTSLVSMGNPHAVFFV-PDANAVDVEKLGAA 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+S A +T+ + + L  WERG G T ACG+AACA+ V++    +T R+V
Sbjct: 188 LEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTGRTGRSV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285
           +V + GG L I W + + HV MTG  + E+ G L     +
Sbjct: 248 TVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLE 287


>gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568641|ref|ZP_04846052.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
 gi|32171444|sp|Q8AAB7|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
          Length = 267

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D            AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +K  T +T  GI V K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVT- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               F      VSMGNPH + FVE D+   +
Sbjct: 119 -------------AVTVDMGSPLETEAVDFGDQFPFQSTRVSMGNPHLVTFVE-DITQIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  + +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLH 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
               R   + M GG + IEW +   H+ MTG A K ++G+++
Sbjct: 225 GLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266


>gi|209883420|ref|YP_002287277.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5]
 gi|229813237|sp|B6JAP3|DAPF_OLICO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209871616|gb|ACI91412.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5]
          Length = 290

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/277 (42%), Positives = 166/277 (59%), Gaps = 3/277 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+++D+R     +++    A++      +DQ+M++   +     AF+RI 
Sbjct: 9   FAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPGTTAFVRIY 68

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126
           N DGSE  +CGNGMRCV + +      ++ TFET  G+L   +       +VDMG P   
Sbjct: 69  NNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTVDMGTPKFG 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHAIF+V+ D+  YDL   G L
Sbjct: 129 WQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWVD-DIEAYDLERLGPL 187

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A V     + +RTWERG GLT ACGSAACA+ VA+  L +T+R V
Sbjct: 188 LENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTV 247

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            + + GG L IEW + ++HV MTG A  E+EG  D  
Sbjct: 248 EMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFDPD 284


>gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
 gi|166225742|sp|A2C243|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
          Length = 284

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 14/285 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN--ITSDA---INALSTD-DNTHFDQIMLIHDFQDASV 60
           +F+K +G+GN  ++ D R  + +   + +    I  L         D I+LI +  +   
Sbjct: 4   NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117
              ++I N DGSE + CGNG+RC++ FL    +    +    ET  G+++   + + +I 
Sbjct: 64  -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIK 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPIL    IP     + +      I   + +   N +  SMGNPH I FV +D+  
Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                +G+ L KH  F    N+    +    ++ ++ WERG G T ACG+ ACA +V + 
Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            L KT    +V + GG L +EW + +  VFM G A K + G++DI
Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284


>gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
           43183]
 gi|167697141|gb|EDS13720.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
           43183]
          Length = 284

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 134/283 (47%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D       N    +    +       D ++LI     A  D
Sbjct: 2   TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    +      +   T +T+ GI + K +  G     
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178
           +   +      P+  ++D          P+    +R     VSMGNPH + FV +D+   
Sbjct: 120 VTVDMGIPSDEPV--NYDGKGSKPMTEHPIEIDGIRYTGTTVSMGNPHLVIFV-NDITKV 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL+S G  L  HP+F +  N+  A+V     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 DLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             +  R   + M GG L IEW     HVFMTGEA K +EG+++
Sbjct: 237 TGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279


>gi|323705514|ref|ZP_08117089.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535416|gb|EGB25192.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 277

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V++     +      A            D ++++        D  +
Sbjct: 1   MKFTKMTGLGNDFIVLENLENKELEYDVLARKLCDRHFGIGGDGLLIVEPS--GIADIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKE----NRDGSISV 118
           RIIN DGSE + CGNG RC  +++           + ET+ GI++ +     +    + V
Sbjct: 59  RIINSDGSEAEMCGNGARCFAKYVYENGIVSKGKMSVETLSGIVMPELIFENDNVDKVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG PI    LIP+    ++   +   I    +        + +G PH + FV+  +   
Sbjct: 119 YMGNPIFRPDLIPVKTDKNQFIEETIKIDGRAY----TVTSLLIGVPHTVIFVD-SIDEN 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G L+ K  +F  G N+   +V    ++ +RTWERG GLT ACG+ ACAS VAS  
Sbjct: 174 MIVNVGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACASAVASAL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             +T R V V    G L IEW  +N++++TG+A+K + G +DI
Sbjct: 234 TDRTKRDVYVHFKRGDLYIEWTSDNNIYLTGKAEKVFTGDIDI 276


>gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
 gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
          Length = 286

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F K +G GN  +V D RG              I  +         D ++ I +  + +
Sbjct: 4   ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L       +K K +  ET  G+ +AK      
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIN-DK 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP     +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILESQNIPTT--IEKKINSIPSHEFIEKNFKYIGYAVGMGNPHLIFFVQ-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L+  G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AK+ + G +
Sbjct: 239 AYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSI 283


>gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
 gi|123621276|sp|Q46L14|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
          Length = 284

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 14/285 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN--ITSDA---INALSTD-DNTHFDQIMLIHDFQDASV 60
           +F+K +G+GN  ++ D R  + +   + +    I  L         D I+LI +  +   
Sbjct: 4   NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117
              ++I N DGSE + CGNG+RC++ FL    +    +    ET  G+++   + + +I 
Sbjct: 64  -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIK 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MGEPIL    IP     + +      I   + +   N +  SMGNPH I FV +D+  
Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                +G+ L KH  F    N+    +    ++ ++ WERG G T ACG+ ACA +V + 
Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
            L KT    +V + GG L +EW + +  VFM G A K + G++DI
Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284


>gi|15615974|ref|NP_244279.1| diaminopimelate epimerase [Bacillus halodurans C-125]
 gi|20137993|sp|Q9K7F0|DAPF_BACHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|10176035|dbj|BAB07131.1| diaminopimelate epimerase [Bacillus halodurans C-125]
          Length = 286

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 146/286 (51%), Gaps = 20/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  + +D        + + + A+     +     D ++LI     A V  
Sbjct: 1   MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPSDRAPV-- 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----- 115
            +R+ N DGSE ++CGNG+RCV +F       K  +F  ET+ G++ A  + + +     
Sbjct: 59  KMRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVHPNDNGLVDT 118

Query: 116 ISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++V+MGEP L    IP L     ++  + F IG   +        VSMGNPHAI F++  
Sbjct: 119 VTVNMGEPRLGRAQIPMLGEEAAEVVAEPFTIGEKEYRL----TAVSMGNPHAIMFIDT- 173

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    +   G LL KH  F + VN+   +V S   +  R WERG G+T ACG+ ACA+VV
Sbjct: 174 IEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACAAVV 233

Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           AS     T   + V+V +LGG L I W +N  V MTG A+   EG 
Sbjct: 234 ASVLNGFTQKGQEVTVHLLGGDLTISWLENGDVLMTGAAETICEGT 279


>gi|254283982|ref|ZP_04958950.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B]
 gi|219680185|gb|EED36534.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B]
          Length = 275

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/279 (31%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID+     N+    I  ++        DQ++L+        D   RI N 
Sbjct: 1   MHGAGNDFVVIDLISQFLNLKPAHIRFIADRQRGIGCDQVLLVEPPTQPENDFRYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGNG RC  RF+  +    ++    ET  G +     +DG I+ ++G PI D 
Sbjct: 61  DGSESGQCGNGARCFARFVREKSLTWKRELQVETRNGTMALTVAQDGRINANLGAPIFDT 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP          D    G            +SMGNPHA+  V+  +    +++ G L+
Sbjct: 121 TQIPFQPE---DSEDNAEYGLTVAGNTHRIGALSMGNPHAVLTVD-SVADAPVSTLGPLI 176

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP F E VN+    + S   + LR +ERGVG T ACGS ACA+ V        + AV+
Sbjct: 177 ESHPAFPERVNVGFMELVSKNEIRLRVFERGVGETEACGSGACAAAVHGIRRGLLDNAVT 236

Query: 248 VKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIKTG 284
           V + GG L + W   DN+ V++ G     +EG + ++ G
Sbjct: 237 VHLPGGKLSVTWSGADNDDVWLAGPTASVFEGVVKLREG 275


>gi|295691528|ref|YP_003595221.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756]
 gi|295433431|gb|ADG12603.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756]
          Length = 284

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 101/275 (36%), Positives = 147/275 (53%), Gaps = 4/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--DNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G+GN  +V+     +   T + I A++         DQ++ I   +     A++R
Sbjct: 5   FLKMNGLGNDFVVVQTLTQNFEPTPEEIRAIAKRGDGGIGCDQVIAIDPPKAEGASAYVR 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG E  +CGNG RCV   L     +    F+T+ G L      +  ++VDMG P L
Sbjct: 65  FWNSDGEETGACGNGTRCVAWLLMQSAGKTEVAFDTVAGRLSGVAAGEKLVTVDMGPPRL 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPLA + D    +   +GP++  ++  P  VSMGNPH +FFV+  +        G+
Sbjct: 125 EWSQIPLAEAMDTARVE-LQVGPIDAPWVHTPVCVSMGNPHVVFFVDAPVSDEFATKTGS 183

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+  HP+F EGVN+  A V S + + L+ WERG GLTAACG+ ACA+ VA+     T+R 
Sbjct: 184 LVEHHPLFPEGVNVGFAHVESRDHIRLKVWERGAGLTAACGTGACAAQVAAVRRGLTDRK 243

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             V+   G L IEW + + HV MTG    ++ GKL
Sbjct: 244 AKVEFESGALTIEWRESDGHVIMTGPVSMDFAGKL 278


>gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 279

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +G GN  +++D +     +    A            D +M     + A  D  +
Sbjct: 1   MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118
           R  N DG+E + CGNG+RC  R+L       +  FT ET+ G +V +          ++V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFSRWLYEEGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVAV 118

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L+   IP+A    +++      +    +        VSMGNPH + FV+ D   
Sbjct: 119 DMGIPVLEGARIPVAGFGTERVVAQPITVAGKEYAM----TCVSMGNPHCVVFVD-DADG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L   G     H  F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLKQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                +R  ++++ GG + + W ++ H+ MTG A++ + G+ 
Sbjct: 234 LNDVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEW 275


>gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
 gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
          Length = 279

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +++D       +  + A+           D +M++   + A  D  +
Sbjct: 1   MEFTKWQGCGNDFVIVDFLDREPVDFAALAVRMCDRHFGVGADGLMIVCPSETA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118
           R  N DG+E + CGNG+RC     +   R++R+ FT ETI G +V +   +      + V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFARCLYDCGRIRREQFTIETIAGTMVPRILTESGEVTAVEV 118

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP+L    IP+     + +      +    +        VSMGNPH + FV+ D   
Sbjct: 119 DMGEPVLAGDAIPVRGFGMEPVIAQPITVEDRTYAM----TCVSMGNPHCVIFVD-DAEG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + LA  G     HP F   +N     V   +   +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATLAAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                +RA  +++ GG + + WH + H+FMTG A+  + G  
Sbjct: 234 LCDVLDRAAEIEVDGGVIHVAWHADGHIFMTGPAEPVFAGIW 275


>gi|319760695|ref|YP_004124633.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039409|gb|ADV33959.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF]
          Length = 277

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 138/283 (48%), Gaps = 13/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D      ++T + I  LS       F+Q++++    D S+D   
Sbjct: 1   MRFSKMHGLGNDFMVVDSITQKVHVTFEKIQWLSNRYRGIGFNQLLIVEPPYDPSIDFHC 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG+RCV RF+  +    +++    T  G +      D  ISV+MGE
Sbjct: 61  RIYNADGSEVYQCGNGIRCVARFVYIKKLTNKENIRISTRFGNMYVSIIDDDLISVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP      + +   F              VVS+GNPH I  VE  +    L  
Sbjct: 121 PIFEPDKIPFIFPQYQKNYILFLP-----TQTILCGVVSIGNPHCIVLVET-IESVSLNI 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F +  N+S  R+   E+++LR +ERGVG T ACGSAACA+V         
Sbjct: 175 LGPALEDHHCFPKKSNISFMRIIDSENIELRVYERGVGETQACGSAACAAVAFGIQQGLL 234

Query: 243 NRA---VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R    V V +LGG L + W      ++M G     ++G + +
Sbjct: 235 IREERLVQVHLLGGSLFVSWKGIGYPLYMIGSTSYVYDGCIHL 277


>gi|149928224|ref|ZP_01916468.1| diaminopimelate epimerase [Limnobacter sp. MED105]
 gi|149823030|gb|EDM82271.1| diaminopimelate epimerase [Limnobacter sp. MED105]
          Length = 291

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 13/290 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S+++ F KM G GN  +V+D      +++   I  L+        DQ++++   + A  D
Sbjct: 4   SNILKFTKMHGAGNDFVVLDNCANQIDLSPGLIKRLADRHFGVGADQVLVVESSELA--D 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
              RI N DG EVQ CGNG RC  +++  +    +   T ET+ GI+  +  +   + V+
Sbjct: 62  FKYRIFNADGQEVQQCGNGARCFAQYVFDKGLTDKNQITVETLAGIIQPELIKHNWVKVN 121

Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           MG   L+ + +P       +R    + + R  +     L      V SMGNPH +  ++ 
Sbjct: 122 MGPAELNPEKVPFIVEGLASRKAGGLIQYRLPVDLGPDLEELWVGVASMGNPHVVILLDQ 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              +  +   G  L  HP F E VN+    +     + LR +ERGVG T ACG+ ACA+ 
Sbjct: 182 PASNDLVQRLGATLESHPRFPERVNVGFLHIVDRSRVHLRVYERGVGETLACGTGACAAA 241

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281
           V    +      V V   GG L IEW    ++ V MTG A+  +EG+  +
Sbjct: 242 VVGMKMGLIAEQVDVVKAGGTLTIEWSGQQDSDVLMTGPAQTVFEGEFYL 291


>gi|302189432|ref|ZP_07266105.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae 642]
          Length = 276

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   + ++       +   N         VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPF-EAAEQASCYTVDVDGQNIEM----AAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G  +  HP F   VN+    V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ALGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276


>gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
 gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
          Length = 267

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ + F KM G GN  + +D            AI           D ++LI     A  D
Sbjct: 2   TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +K  T +T  GI V K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVT- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               F      VSMGNPH + FVE D+   +
Sbjct: 119 -------------AVTVDIGSPLETEAVDFGDQFPFQSTRVSMGNPHLVTFVE-DITQIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  + +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLH 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
               R   + M GG + IEW +   H+ MTG A K ++G+++
Sbjct: 225 GLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266


>gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
 gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
          Length = 279

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K +G GN  +++D +     +    A            D +M     + A  D  +
Sbjct: 1   MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118
           R  N DG+E + CGNG+RC  R+L  +    +  FT ET+ G +V            ++V
Sbjct: 59  REFNPDGTEPEMCGNGIRCFSRWLYEQGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVAV 118

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P+L+   IP+A    + +      +    +        VSMGNPH + FV+ D   
Sbjct: 119 DMGIPVLEGARIPVAGFGTEHVVAQPIMVAGKEYAM----TCVSMGNPHCVVFVD-DADG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L   G     H  F   +N     V       +R WERG G+T ACG+  CA++ A  
Sbjct: 174 FPLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  +R  ++++ GG + + W ++ H+ MTG A++ + G+ 
Sbjct: 234 LNNVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEW 275


>gi|254561878|ref|YP_003068973.1| diaminopimelate epimerase [Methylobacterium extorquens DM4]
 gi|254269156|emb|CAX25122.1| diaminopimelate epimerase [Methylobacterium extorquens DM4]
          Length = 285

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 127/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI N D
Sbjct: 1   MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIYNTD 60

Query: 71  GSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           GSE  +CGNG RCV         +    +  + T ET  G++  K   + S +VDMG+P 
Sbjct: 61  GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL   G
Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIA VT  +++ LR WERG GLT ACG+AACA+VVA+  L    R
Sbjct: 181 PLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRLIGR 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
           A  V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 241 AARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282


>gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
 gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
          Length = 286

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 139/285 (48%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F K +G GN  ++ID RG              I  +         D ++ I +  + +
Sbjct: 4   ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L       +    +  ET  G+ +AK      
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIN-DE 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP     +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILEGQNIPTT--IEKKINSIPSHEFIEKDFSNMGYAVGMGNPHLIFFVK-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W +++  V MTG AKK + G +
Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSI 283


>gi|229826428|ref|ZP_04452497.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC
           49176]
 gi|229789298|gb|EEP25412.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC
           49176]
          Length = 302

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 29/296 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G  N  L ID       N T  ++           D I+LI   +  + D  +
Sbjct: 12  INFTKMHGCKNDYLYIDCTKNELYNPTEVSVKLSDRHTGIGSDGIILICPSK--AADFRM 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-- 122
           RI N DGSE + CGNG+RCV +F+               G+   +E   G I  +  +  
Sbjct: 70  RIFNADGSEAEMCGNGIRCVGKFVYDFGLTDKEEVRIETGVRSNEEETTGIIPENRIKVL 129

Query: 123 ------------------PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
                             PI+    IP+  + ++   +  +I   +         VSMGN
Sbjct: 130 QLKVENGNVRAATVDMGRPIITPSEIPVVSAKNEFINEPINIEGKD----WYFTCVSMGN 185

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV+ D    DL   G     + +F    N    +V S   L++R WERG G T A
Sbjct: 186 PHAVTFVD-DTKSLDLPVIGPKFEFNEIFPNRTNTEFIKVISRTELEMRVWERGSGETLA 244

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           CG+ ACAS  A+   +     V+V +LGG L+I++     H+FMTG  +  + G +
Sbjct: 245 CGTGACASAYAAILNNLVEDEVTVHLLGGDLIIKYDRATGHIFMTGPCETVFSGSI 300


>gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
 gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
          Length = 277

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G + + T  AI           D ++++      + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSD--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSI----SV 118
           RIIN DGSE + CGNG+RC     +    + +++FT ET+ GI+      +  +    +V
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKETFTIETLAGIMKPTLTIENGVVTLVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P  + K +P+    DK+      +             V +G PH   +VE D+   
Sbjct: 119 DMGKPFFNSKDVPMNVDMDKVIDVDIDVNG----ETVTVSSVLLGVPHTEVYVE-DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS V S  
Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|189461606|ref|ZP_03010391.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136]
 gi|189431716|gb|EDV00701.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136]
          Length = 266

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 18/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + ++      +   +     S        D ++LI     A  D  +
Sbjct: 3   IEFTKMHGAGNDYIYVNTLRYPIDNPEELSVEWSRYHTGIGSDGLVLICPSDQA--DFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE + CGN  RC+ ++L       +     ET+ GI +   + +   +V+   
Sbjct: 61  RIFNADGSEARMCGNASRCIGKYLYEEGLTNKTDIQLETLSGIKILHLHLNDKNTVESVT 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +    IP          D   +             VSMGNPH + FV+ ++    L  
Sbjct: 121 VDMG---IPT---------DIHEVALGEGYIASKGIAVSMGNPHLVIFVD-EINKIKLEE 167

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  HP+F + VN+   +V +   + +R WERG G+T ACG+ ACA+ VAS    + 
Sbjct: 168 VGPALEHHPLFPDRVNVEFVQVLTDSKVRMRVWERGSGITQACGTGACATAVASAFTDRC 227

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            R  S+ M GG L IEW  +NH++MTG A K ++GK++I
Sbjct: 228 GRKSSIVMDGGTLEIEWAGDNHIYMTGPATKVFDGKIEI 266


>gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
 gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
 gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
 gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
 gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
 gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
          Length = 277

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G   + T  AI           D + ++   +  + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGN +RC     +      +++FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P    + IP+  + DK+      +    +        V +G PH   F++ D+   
Sbjct: 119 DMGKPFFKAQDIPMNVNMDKV----IDVDLNVNGETVTVSSVLLGVPHTEVFID-DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS   S  
Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAAMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 276

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A      +    FDQ++++    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    ++    ET  G++      DG ISV+MG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P L    IP               G    L       VSMGNPHA+  V+ D+    + 
Sbjct: 122 APRLVPADIPFQAPAQADSYTLDVDGRQVQLA-----AVSMGNPHAVLRVD-DINSAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F   VN+   +V   +   LR WERG G T ACG+ ACA+ VA+     
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            +  + + + GG L IEW      V MTG A + +EG++ +
Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276


>gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
 gi|167704565|gb|EDS19144.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
          Length = 283

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  +  D       +  + I  +S        D +++I        D  +
Sbjct: 9   LHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSDQ--YDFKM 66

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISV---- 118
           R+ N DGSE   CGNG+RC  +F+             ET  G+   +   DG   +    
Sbjct: 67  RMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAKV 126

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+P+L  + IP   + +KM  +   IG   +        +SMGNPH + FV  DL   
Sbjct: 127 NMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRL----TTISMGNPHTVTFVS-DLDTL 181

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G     H +F   VN    ++ +   + +R WERG G T ACG+ ACA + A   
Sbjct: 182 DLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACYL 241

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            H T+  V+V++LGG L IE+  +  + M+G A   + G ++I
Sbjct: 242 NHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIEI 283


>gi|58578685|ref|YP_196897.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417311|emb|CAI26515.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden]
          Length = 281

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 97/277 (35%), Positives = 139/277 (50%), Gaps = 10/277 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S +++F KM G  N  ++ID R    +   +             DQ+++I   + A  D 
Sbjct: 15  SHVINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DC 71

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I N DGS+V+ CGN  RCV   L++  K  + T E    IL         I V+MG 
Sbjct: 72  FIHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGY 131

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   WK IP+    D +        P+    L  P  V++GNPHA+FFV+  +    L  
Sbjct: 132 PKFHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFVD-SIDDIPLTK 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H +F    N+SIA+V S   + LR WERG G TA+CGSAACA++VA+   + T
Sbjct: 185 IGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYT 244

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           N   ++ + GG LLI + D+N + M G     + G +
Sbjct: 245 NHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 281


>gi|260752485|ref|YP_003225378.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551848|gb|ACV74794.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 269

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 142/274 (51%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     +      ALS        DQ+++I + ++   D  + I
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G   VDMG P L 
Sbjct: 64  WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEG-ACVDMGRPRLS 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA + D +        PV    L+ P  V+MGNPH   FV DD+   D    GN+
Sbjct: 118 WDEIPLAYAMDTL------SMPVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +    +F E +N++I  VT    L +RTWERG GLT ACG+ ACA+ VA+      +   
Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|21232928|ref|NP_638845.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766999|ref|YP_241761.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990092|ref|YP_001902102.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|24418361|sp|Q8P548|DAPF_XANCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81307014|sp|Q4UYY2|DAPF_XANC8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813254|sp|B0RNK1|DAPF_XANCB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21114764|gb|AAM42769.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572331|gb|AAY47741.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731852|emb|CAP50036.1| dapF [Xanthomonas campestris pv. campestris]
          Length = 284

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 125/283 (44%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
            +  + F KM G GN  +V+D+R       +     L+        DQI+ I   + A  
Sbjct: 6   HTGRLRFTKMHGAGNDFVVLDLRNGTPPPDASLAARLADRHFGVGCDQILTIETPRSAEA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A  RI N DGS  Q CGNG RCV  +L      +   FT ++       +    G+ SV
Sbjct: 66  VAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAHRVERLDAGTYSV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F E VN+  A+V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAVVLMH 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W      V M+G A   ++G+ +
Sbjct: 241 RGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDGEWN 283


>gi|294085379|ref|YP_003552139.1| diaminopimelate epimerase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664954|gb|ADE40055.1| Diaminopimelate epimerase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 293

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 21/288 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDAS 59
           M+ F KM G+GN  +++D R     I +D     +            DQ+++I    +A 
Sbjct: 1   MITFLKMHGLGNDFVILDARDPDSGIGADISVRAASLVSDRRRGIGCDQLLIIRPSDNA- 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS---I 116
            D F++I+N DGS   +CGNG RCV  ++   +       ET   +L A+ +R G    I
Sbjct: 60  -DIFMQILNQDGSVAGACGNGTRCVADYVMRDLDVDQLLIETKSTMLFAERSRIGDADLI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +V+MG   LDW+ +PLA++ D +  D     P            SMGNPHA+ FV+ D+ 
Sbjct: 119 AVNMGAARLDWQQVPLAQAQDTLHVDLGADAP------ALAVCQSMGNPHAVMFVD-DVA 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL + G  L    +F +  N+SI +        +R WER VG+T ACGS ACA  VA+
Sbjct: 172 AIDLDAIGPKLEHADIFPDRANISIVQKLDDAKFRMRVWERSVGITQACGSGACAVGVAA 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
                  R   + M GG ++IEW DN      V MTG       G LD
Sbjct: 232 HRRGLAGRLSEIVMDGGSVIIEWRDNGTAGGEVIMTGPVTYVGHGVLD 279


>gi|295090071|emb|CBK76178.1| diaminopimelate epimerase [Clostridium cf. saccharolyticum K10]
 gi|295115936|emb|CBL36783.1| diaminopimelate epimerase [butyrate-producing bacterium SM4/1]
          Length = 269

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 127/286 (44%), Gaps = 26/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + +D      +N    A+   +       D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
            + N DGS    CGNG+RCV ++          RK  T ET  GI           +V +
Sbjct: 59  DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEKNGKAVQL 118

Query: 121 GEPILDWK---LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
              +   +    IP +   D  +                   +SMGNPHA+ FV+ D   
Sbjct: 119 TVDMGRPEQTSEIPESIEVDGKEYQ--------------FIGISMGNPHAVLFVD-DTAA 163

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L S G     H  F +  N    +V     + +R WERG G T ACG+ ACAS VAS 
Sbjct: 164 VPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVASI 223

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
               T+  V V++LGG L IEW  + + V+MTG A + + G++ I 
Sbjct: 224 LSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269


>gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
 gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
          Length = 277

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 135/284 (47%), Gaps = 14/284 (4%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   KM G+GN  ++  D +G   + T  AI           D + ++   +  + D  +
Sbjct: 1   MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
           RIIN DGSE + CGN +RC     +      +++FT ET+ G++      +      ++V
Sbjct: 59  RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+P    + IP+  + DK+         +N   +    V+       +F    D+   
Sbjct: 119 DMGKPFFKAQDIPMNVNMDKVIDVDL---DINGETVTVSSVLLGVPHTEVFID--DITKA 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G +L KH  F    N++   V + + + +RTWERG G T ACG+ +CAS + S  
Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAIMSFE 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              T R V V++  G L I + ++  V MTG A++ +E +L I 
Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277


>gi|238750681|ref|ZP_04612180.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380]
 gi|238711071|gb|EEQ03290.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380]
          Length = 261

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 86/267 (32%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + + I  L+       FDQ++++    D  +D   RI N DGSEV  C
Sbjct: 1   MVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVAQC 60

Query: 78  GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+  +    ++  +  T  G ++   N D ++ V+MGEP  D + +P    
Sbjct: 61  GNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVNEDETVCVNMGEPNFDPQAVPFRA- 119

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                   +      H  L    VVSMGNPH +  V+ D+   ++A  G +L  H  F E
Sbjct: 120 --TKAEKTYIFRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVALLGPVLESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
             N+   +V S E + LR +ERG G T ACGS ACA+V            V V++ GG L
Sbjct: 175 RANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELLGEEVHVELPGGSL 234

Query: 256 LIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            I W    H ++MTG A   ++G + +
Sbjct: 235 HISWKGPGHPLYMTGPATHVYDGFIHL 261


>gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 291

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+  +GN  ++I+    +      A+ A         D ++++   Q A  D  +R
Sbjct: 1   MDFTKLHSLGNDFILIEGDLDNSEWPETAVWACDRHFGIGGDGLLVLMPSQKA--DYRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE---NRDGSISVDM 120
           I N DGSE ++CGNG+RC+V+++       ++  T ET  G+  A       D  I   M
Sbjct: 59  IFNNDGSEAEACGNGLRCLVKYILEFKEQDKQELTIETAAGVRKATISGNTSDPDIKTGM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           GEPIL+   IP+     K               +        VSMGNPHAI F+E DL  
Sbjct: 119 GEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTLAFVSMGNPHAIEFIESDLEA 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + L   G  + KH MF    N  IARV     +++R WERGVG T ACGS ACA VVAS 
Sbjct: 179 FPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGACAVVVASW 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +  T   V +K+ GG L  EW +   V++TG A+  + G 
Sbjct: 239 IMGLTEGQVDIKLPGGELKAEWAETGEVYLTGRAQVVFSGN 279


>gi|146279011|ref|YP_001169170.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557252|gb|ABP71865.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025]
          Length = 278

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 103/273 (37%), Positives = 138/273 (50%), Gaps = 15/273 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +VID RG    +++    AL        FDQ+  I D +    D  +  
Sbjct: 12  FMKMHGAGNDFVVIDSRGRGAVMSAGLARALGDRHRGVGFDQLAEIRDHE--GADFALDF 69

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGN  RCV  ++   + R +    T RG L A    DG +SV+MG P L 
Sbjct: 70  WNSDGSRAGACGNATRCVCDYIMRDLGRDAVALVTARGRLHAVRRTDGLVSVNMGAPQLL 129

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLAR             P +      P  V MGNPH IFFVE D    DLA  G  
Sbjct: 130 WSEIPLARDV----------VPDSLPLAGAPAAVGMGNPHCIFFVE-DAEAVDLAGQGAA 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +   P+F E  N+  A + + + L LR WERG G+T ACGS ACA+ VA+     T R V
Sbjct: 179 VETDPLFPERTNVEFASLIAPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQV 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            ++M GG L ++W ++  V+++G     +EG+L
Sbjct: 239 VLEMDGGTLEVDWREDG-VWLSGPVAHVFEGRL 270


>gi|301630319|ref|XP_002944269.1| PREDICTED: diaminopimelate epimerase-like [Xenopus (Silurana)
           tropicalis]
          Length = 289

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 16/287 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----ASVDAFIR 65
           M+G GN  +V+D       +++     L+        DQI+ +         A +D    
Sbjct: 1   MQGAGNDFIVLDETQGRLGLSAAQYRFLADRHLGVGADQILSVRAPTPQAVAAGIDFEYV 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I N DG EV+ CGNG RC  RF+  +    + S   +T  G++  +   DG +SVDMG P
Sbjct: 61  IHNADGGEVEQCGNGARCFARFVRDQGLTDKDSIRVQTRAGVIAPRLTADGRVSVDMGLP 120

Query: 124 ILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
               + +P   S        + ++    +  +      +  + SMGNPHA+  V+ D+  
Sbjct: 121 RFAPQQLPFDASGLAPTTRHQGEKWPLTLDGIAPAAHVSIAIASMGNPHAVLLVD-DVDT 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A++G L+  H  F   VN    ++     + LR +ERG G T ACG+ ACA+VV+  
Sbjct: 180 APVATWGPLIECHARFPARVNAGFLQIVDRAQVRLRVYERGAGETLACGTGACAAVVSGI 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282
            L   +  V V   GG L I W     + VF+TG A   +EG++++ 
Sbjct: 240 RLGLLDGLVDVHTRGGRLSIAWAGGTSDPVFLTGPATTVFEGQIELP 286


>gi|283797411|ref|ZP_06346564.1| diaminopimelate epimerase [Clostridium sp. M62/1]
 gi|291074767|gb|EFE12131.1| diaminopimelate epimerase [Clostridium sp. M62/1]
          Length = 269

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 128/286 (44%), Gaps = 26/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + +D      +N    A+   +       D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
            + N DGS    CGNG+RCV ++          RK  T ET  GI       +   +V +
Sbjct: 59  DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEENGKAVQL 118

Query: 121 GEPILDWK---LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
              +   +    IP +   D  +                   +SMGNPHA+ FV+ D   
Sbjct: 119 TVDMGRPEQTSEIPESIEVDGKEYQ--------------FIGISMGNPHAVLFVD-DTAA 163

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L S G     H  F +  N    +V     + +R WERG G T ACG+ ACAS VAS 
Sbjct: 164 VPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVASI 223

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
               T+  V V++LGG L IEW  + + V+MTG A + + G++ I 
Sbjct: 224 LSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269


>gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
 gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
          Length = 323

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 137/283 (48%), Gaps = 12/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++FAK EG+GN  ++ID R      +T +    L         D ++          D  
Sbjct: 39  IEFAKYEGLGNDFILIDDRDRETPRLTPEQSERLCNRNFGVGGDGVIFALKAPQ-DYDFT 97

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +RI N DGSE + CGNG+RC  +FL       KS+   T+ G +V + N   +I+VDMGE
Sbjct: 98  MRIYNSDGSEPEMCGNGIRCFAQFLKDLGEDAKSYKVNTLAGPIVPEMNP-DTITVDMGE 156

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           PILD   +P   + +           V+ +        VSMGNPHAI FV+D     D A
Sbjct: 157 PILDGPSVPTTLAPNSEHNSVLEQTHVDKNGKEWKISAVSMGNPHAIIFVDDLEKDIDFA 216

Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             G  L      F    N+   +V S   L ++ WERG G T ACG+  CA VVA+   +
Sbjct: 217 VDGPALESDTGAFPAKTNVEFVQVMSPNHLKMKVWERGAGPTLACGTGTCALVVAAIRAN 276

Query: 241 KTNRA----VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           K  R     V V + GG L IEW  +NN ++MTG A   ++G 
Sbjct: 277 KIPRPGKEGVRVTLPGGDLFIEWREENNRIYMTGPATLSFKGT 319


>gi|149912566|ref|ZP_01901100.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b]
 gi|149812972|gb|EDM72798.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b]
          Length = 292

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/285 (34%), Positives = 141/285 (49%), Gaps = 19/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V+D R     +T   AI          FDQ+ +I        DA +
Sbjct: 24  LPFMKMHGLGNDFVVLDARARSLEVTPALAIALADRHKGVGFDQLAVI---SQGQRDAHL 80

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RC+ RFL     +      T RG L A +  +G  +V+MG+P 
Sbjct: 81  TFYNADGSTSAACGNATRCIARFLMDESGQGELCLTTDRGDLYALDRGEGMTAVNMGQPQ 140

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L+W+ IPLA + D ++                P    MGNPH  FFVE D     L  FG
Sbjct: 141 LEWQDIPLAEAMDTVEL----------PIEGGPSATGMGNPHCTFFVE-DAEAIPLEQFG 189

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ E  N+ +  VT  + L +R WERGVG T A GS++CA+ VA+     T R
Sbjct: 190 PRYEHHPLYPERTNVQVVSVTGPDHLRMRVWERGVGHTLASGSSSCAAAVAAARRGLTGR 249

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            V + + GG L I+W ++  V+MTG     ++G L   T ++++ 
Sbjct: 250 KVRIDLDGGTLYIDWREDG-VWMTGPTAHVFDGVL---TQEFLEG 290


>gi|56551968|ref|YP_162807.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81598240|sp|Q5NNL4|DAPF_ZYMMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56543542|gb|AAV89696.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 269

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     +      ALS        DQ+++I + ++   D  + I
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G   VDMG P L 
Sbjct: 64  WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEG-ACVDMGRPRLS 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA + D +        PV    L+ P  V+MGNPH   FV DD+   D    GN+
Sbjct: 118 WDEIPLAYAMDTL------SMPVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +    +F E +N++I  VT  + L +RTWERG GLT ACG+ ACA+ VA+      +   
Sbjct: 171 IEHDQLFPERINVNIVMVTGKDHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7]
 gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7]
          Length = 277

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 15/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEGIGN  +  D       +  + I  +S        D +++I        D  +
Sbjct: 3   LHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSDQ--YDFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISV---- 118
           R+ N DGSE   CGNG+RC  +F+             ET  G+   +   DG   +    
Sbjct: 61  RMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+P+L  + IP   + +KM  +   IG   +        +SMGNPH + FV  DL   
Sbjct: 121 NMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRL----TTISMGNPHTVTFVS-DLDTL 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL + G     H +F   VN    ++ +   + +R WERG G T ACG+ ACA + A   
Sbjct: 176 DLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACYL 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            H T+  V+V++LGG L IE+  +  + M+G A   + G + I
Sbjct: 236 NHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIKI 277


>gi|329891138|ref|ZP_08269481.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568]
 gi|328846439|gb|EGF96003.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568]
          Length = 299

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 153/296 (51%), Gaps = 21/296 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTH-FDQIMLIHDFQDA 58
           M      + +M G GN  +V+       + T D + AL+        FDQ++ +   + A
Sbjct: 5   MSQPARPYIRMNGAGNAFIVVQAFEEPFHPTEDQVRALADPATGLGGFDQLIGVEPSETA 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR------ 112
             DAF+R+ N DGS V++CGN +RCV   L     ++    +T+ G   A+         
Sbjct: 65  --DAFMRVWNADGSMVETCGNALRCVGWLLLEATDKEEVVIDTLGGPTTARRAAGRVGSG 122

Query: 113 --------DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
                      ++VDMG P LDW  +PL+   D    +   +GP++   L  P  VSMGN
Sbjct: 123 DPEGSTAATHQVTVDMGAPRLDWSQVPLSEDMDTRGIE-LQVGPIDAPVLHTPGAVSMGN 181

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PH +FF +  L    +   G+L+  HP+F EGVN+  A V + + + LR WERG GLT A
Sbjct: 182 PHVVFFTDR-LDDAFVRGSGSLVEHHPLFPEGVNVGFADVLARDHIRLRVWERGAGLTLA 240

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           CG+ ACA++VAS     T+R  +V + GG L I+W + + HVFMTG  + E  G L
Sbjct: 241 CGTGACAALVASARRGLTDRKAAVTVDGGELTIDWDEASGHVFMTGPVEVEGTGFL 296


>gi|150398287|ref|YP_001328754.1| diaminopimelate epimerase [Sinorhizobium medicae WSM419]
 gi|150029802|gb|ABR61919.1| Diaminopimelate epimerase [Sinorhizobium medicae WSM419]
          Length = 292

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 150/283 (53%), Positives = 189/283 (66%), Gaps = 1/283 (0%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GNKILV+DMRG  D +T  A   L+ D  T FDQIM IHD + A  DA+I I+N D
Sbjct: 1   MNGLGNKILVVDMRGRKDRVTRQAAIVLNADPATEFDQIMAIHDPKSAGTDAWIDIVNSD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS  Q+CGNG RCVV+ L +   +K+F F T+ G+L AKE+ DGSISVDMG+P   W  I
Sbjct: 61  GSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAKEHDDGSISVDMGKPRFRWDQI 120

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA  F    R    IGP+    L +P VVSMGNPHAIF+VE+D+  YDL  FG LL  H
Sbjct: 121 PLAEEFHDTRRIELQIGPIEAPVLHSPSVVSMGNPHAIFWVENDVSGYDLDRFGPLLENH 180

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E  N+S+AR+ S + +DLRTWERG GLT ACGSAACA+ V+     +T RAV+V +
Sbjct: 181 PIFPERANISVARIRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTERAVTVNV 240

Query: 251 LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
            GG L IEW + ++HV MTG A+ EW G LD  TG + +   +
Sbjct: 241 PGGPLRIEWRESDDHVIMTGPAEWEWSGTLDPVTGIFERNEPE 283


>gi|237727177|ref|ZP_04557658.1| diaminopimelate epimerase [Bacteroides sp. D4]
 gi|229434033|gb|EEO44110.1| diaminopimelate epimerase [Bacteroides dorei 5_1_36/D4]
          Length = 271

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 138/275 (50%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  + ++ +R    +    +I   S       D ++LI     A  D  +RI N 
Sbjct: 1   MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +    V+     +D 
Sbjct: 59  DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVEEVTVDMDL 117

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            L+  +R  +  D                   V MGNPH + F++ D+ + +L + G  L
Sbjct: 118 PLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVNLPAIGPKL 176

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F E  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   HK  R   
Sbjct: 177 ENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAGRKSR 236

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 237 VRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271


>gi|119383149|ref|YP_914205.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222]
 gi|119372916|gb|ABL68509.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222]
          Length = 275

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 15/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID R       +  + A++       FDQ+ +I   ++A  DA +
Sbjct: 13  LPFMKMHGLGNDFVVIDSRRTGALPDAATVAAIADRHRGVGFDQLAVILPGENA--DARL 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS   +CGN  RCV RFL      ++    T   +L A++  D    V+MG P+
Sbjct: 71  VFFNADGSLSAACGNATRCVARFLMDETGARALRLATDHAVLAAEDAGDRLTRVNMGAPV 130

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           LDW  IPLA   D +                +P    MGNPH + F   D    DL  FG
Sbjct: 131 LDWAGIPLAEDVDTLHL----------PVPGDPVATGMGNPH-MTFFVPDAAAVDLERFG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                HP++ +  N+ + +V S + + LR WERG G+T A GS +CA+VVA+     T R
Sbjct: 180 PAHEHHPLYPQRTNIELVQVVSPDEIILRIWERGTGITLASGSCSCAAVVAAARRGLTGR 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V + GG L I+W ++  V+MTG     ++G  
Sbjct: 240 RVRVNVPGGVLEIDWREDG-VWMTGPTAHVFDGVW 273


>gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514]
 gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514]
 gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
          Length = 269

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 90/277 (32%), Positives = 141/277 (50%), Gaps = 14/277 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN  +VI+ R    + +  AI           D ++++        D  +RI N D
Sbjct: 1   MHGLGNDFIVIEAREN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMRIFNAD 57

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVDMGEPI 124
           GSE + CGNG RC  +++  R   K      ET+ G+++ +      +  S+ V MG PI
Sbjct: 58  GSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPI 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            +   IP+     K   +   I    +        + +G PH I FV+  L    +   G
Sbjct: 118 FEANKIPVKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVK-SLDENMIKELG 172

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             + K  +F +G N+   +V   E++ +RTWERGVGLT ACGS ACAS VAS  L KT R
Sbjct: 173 PKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTER 232

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V+V   GG LL+EW D+N ++++G  ++ + G++++
Sbjct: 233 NVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 269


>gi|281354876|ref|ZP_06241370.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548]
 gi|281317756|gb|EFB01776.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548]
          Length = 276

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 10/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K  G+GN  ++++       +    A +          D ++ +           +
Sbjct: 1   MQFSKWHGLGNDFVIVEPEKNPGFDFRGSAEHLCDRHFGIGADGVVTVRPL--GGSAFEM 58

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG+E + CGN  RCV              F   T  GI+  K   +GS+ VDMGE
Sbjct: 59  RIYNSDGTETEMCGNATRCVGLYIRKNKLAAGSEFELHTRGGIVRPKVLDNGSVRVDMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L    IP+A        +     P       +   VSMGNPHA+ FV  D+   +L  
Sbjct: 119 PHLLRGEIPVAGDPASGAENLAIELP---GRQFSAVGVSMGNPHAVIFV-PDINAVELEK 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G  +  H +F    N+    V S   + +R WERG G+T ACG+ +CA+ VA     +T
Sbjct: 175 WGPQVECHALFPNKTNVEFVEVISDRMVRMRVWERGCGVTLACGTGSCATCVAGVVTGRT 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
            R ++V + GG L I++  ++NHV+MTG A + + G+
Sbjct: 235 ARCITVLLDGGELQIDYSLNDNHVYMTGPACEVFRGQ 271


>gi|154499895|ref|ZP_02037933.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC
           29799]
 gi|150271493|gb|EDM98750.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC
           29799]
          Length = 280

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 21/286 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G+GN  + ++  G   DN+   A+           D ++ I   + A  D  +
Sbjct: 1   MRFTKMQGLGNDYVYLNCTGGLPDNLPELAVRLSDRHFGVGADGLICICPSERA--DFGM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDGSISVDMG 121
           RI N DGSE   CGNG+RC+ +++  +   +     T ET  G+   +      +   + 
Sbjct: 59  RIFNADGSEGAMCGNGIRCLGKYVYDKGLTRKTSLLTVETASGVRYLELFLRDGLVQSVL 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   +L P  +              +          VS+GNPHA+ F    +   +LA
Sbjct: 119 VDMGRPELSPPVK-------------LMAAGRTWQAVPVSVGNPHAVVFCGG-VDALNLA 164

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L +HP F + VN+  A+      L +R WERG G T ACG+ ACA++ A+     
Sbjct: 165 ELGPALERHPAFPDRVNVEFAQSDDRGGLKVRVWERGSGETLACGTGACAALTAAARAGL 224

Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            +R  +V + GG L + W  +N H++MTG A   +EG++ ++   +
Sbjct: 225 VSRHTTVHLPGGELEVRWAEENGHLYMTGPAVTVFEGEISLENENY 270


>gi|237710867|ref|ZP_04541348.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA]
 gi|229454711|gb|EEO60432.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA]
          Length = 271

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 8/275 (2%)

Query: 11  MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  + ++ +R    +    +I   S       D ++LI     A  D  +RI N 
Sbjct: 1   MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSE   CGN  RC+ +++      +++  T ET+ GI + K + +    V+     +D 
Sbjct: 59  DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVEEVTVDMDL 117

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            L+  +R  +  D                   V MGNPH + F++ D+ + +L + G  L
Sbjct: 118 PLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVNLPAIGPKL 176

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
             HP+F +  N+    V    SL +R WERG G+T ACG+ ACA+ VA+   HK  R   
Sbjct: 177 ENHPLFPKRTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAGRKSR 236

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V+M GG L + W++ + HV+MTG A K ++G+++I
Sbjct: 237 VRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271


>gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
          Length = 278

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 95/281 (33%), Positives = 142/281 (50%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VID RG    +    A            D I+L+ D + A  D  +
Sbjct: 1   MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117
           RIIN DGSE + CGNG+RC  +++  R   KS  F  ET+ GI+  +           + 
Sbjct: 59  RIINSDGSEAEMCGNGIRCFAKYVFERGIVKSTKFKVETLAGIIEPELFVNEYGLVDKVK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+P    + IP+         +   +   N   +     + MG PH I FV+ DL  
Sbjct: 119 VNMGKPSFKREDIPMQGDPKSDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DLEK 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+ + G  + KH +F    N++  +V    ++ +RTWERG G T ACG+ +CASV+A+ 
Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                 R  SV +  G L IEW D+  VFMTG A++ + G+
Sbjct: 235 LNGYAERKASVHLYFGILEIEWQDDGIVFMTGPAEEVFVGE 275


>gi|241761946|ref|ZP_04760031.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373626|gb|EER63198.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 269

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 142/274 (51%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G+GN  +V+D R     +      ALS        DQ+++I + ++   D  + I
Sbjct: 5   FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGSEV++CGN  RCV  FL      +     T  G+L A+ + +G   VDMG P L 
Sbjct: 64  WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEG-ACVDMGRPRLS 117

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA + D +        PV    L+ P  V+MGNPH   FV DD+   D    GN+
Sbjct: 118 WDEIPLAYAMDTL------SMPVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNI 170

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           +    +F E +N++I  VT    L +RTWERG GLT ACG+ ACA+ VA+      +   
Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLISGKT 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + + GG L+++ +   H+ M G A   ++G+ D
Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264


>gi|240139471|ref|YP_002963946.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium
           extorquens AM1]
 gi|240009443|gb|ACS40669.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium
           extorquens AM1]
          Length = 285

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 127/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN I+V+D+RG    +T     A++ D ++ FDQ+M++HD      DAF+RI N D
Sbjct: 1   MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPCTDAFMRIYNTD 60

Query: 71  GSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           GSE  +CGNG RCV         +    +  + T ET  G++  K   + S +VDMG+P 
Sbjct: 61  GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   YDL   G
Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            LL  HP+F E  N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+  L    R
Sbjct: 181 PLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRMIGR 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              V + GG L IEW  ++HV MTG    E EG    D+  G
Sbjct: 241 TARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282


>gi|254456341|ref|ZP_05069770.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083343|gb|EDZ60769.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 274

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R  + N++ D I  +   D    DQ++ I +      DA + 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRSQNYNLSKDQIIKICGRDFIGCDQLIFIKNSGKK--DAELE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV   L+     K     T  G L +K   +  +  ++G    
Sbjct: 61  FYNSDGSISGACGNGTRCVAELLSKESDDKEIILWTSSGTLKSKILGNNLVETEIGVAKT 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  IPL +  +  + +   I   N+  +     +++GNPH +FF++ D+  YDL   G 
Sbjct: 121 NWDEIPLKKDLNTKNLNIKIISKNNNEHIG-GTSINVGNPHVVFFID-DIEDYDLKKIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  H  F E  N+++A+V +   + ++ WERG GLT ACG+AACA+VVA+     T++ 
Sbjct: 179 EIENHNYFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATVVAANINGLTDKQ 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             V+   G L I    +N + M G        ++ I
Sbjct: 239 ADVEFALGKLTISIDKDNSIHMKGPVSDIKNIEIKI 274


>gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 286

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 16/286 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           F K  G GN  ++ID R  +       +   D  N          D ++ I +    +  
Sbjct: 6   FEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILEPDRNNY- 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSIS 117
           A + I N DGSE Q CGNG+RC+V++L +  K       +  ET  GI +A+ N +G I+
Sbjct: 65  AKMIIYNSDGSEAQMCGNGIRCLVQYLHNFNKGSYSVSEYRIETKAGIKIAQYN-NGEIT 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+PIL+ K IP     D               F +  + V MGNPH IFF++ D+  
Sbjct: 124 VKMGKPILETKSIPT--KIDTKINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQ-DITK 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L+  G +  KH +F E  N+  +++ + +++++R WERG G T ACG+ ACA  VA+ 
Sbjct: 181 ISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGACAVHVAAY 240

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
            L   N    + + GG L+I W    + + MTG AKK + G   +K
Sbjct: 241 KLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYILK 286


>gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
 gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
          Length = 286

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59
           ++F K +G GN  +VID RG              I  +         D ++ I +  + +
Sbjct: 4   INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIFDIKQICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L       +    +  ET  G+ +AK      
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIN-DE 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP     +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILESQNIPTT--IEKKINSIPSHEFIEKNFNNMGYAVGMGNPHLIFFVK-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L   G +  K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AKK + G +
Sbjct: 239 AYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSM 283


>gi|209551319|ref|YP_002283236.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|229813253|sp|B5ZTH4|DAPF_RHILW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|209537075|gb|ACI57010.1| Diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 301

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 151/297 (50%), Positives = 197/297 (66%), Gaps = 5/297 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWNRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            R V++ +        L IEW + ++HV MTG A+ EW G LD  TG W +    + 
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSLDPSTGLWSRDGTQEA 298


>gi|126463355|ref|YP_001044469.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105019|gb|ABN77697.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029]
          Length = 278

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 103/277 (37%), Positives = 137/277 (49%), Gaps = 16/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID RG    + T+    AL        FDQ+  I        D  + 
Sbjct: 11  FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 68

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+MG P L
Sbjct: 69  FWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNMGAPQL 128

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLAR+ +                   P  V MGNPH +FFVE D+   DLA  G 
Sbjct: 129 LWSEIPLARAMETDSL----------PLEGGPAAVGMGNPHCVFFVE-DVEAVDLAGRGA 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+     T R 
Sbjct: 178 SVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 238 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 273


>gi|138896544|ref|YP_001126997.1| diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2]
 gi|196250903|ref|ZP_03149588.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16]
 gi|166224258|sp|A4ISE8|DAPF_GEOTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|134268057|gb|ABO68252.1| Diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2]
 gi|196209632|gb|EDY04406.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16]
          Length = 290

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 19/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + +D+       +++ + A +          D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SISV 118
           RI N DGSE ++CGNG+RCV ++       +  +F  ET+ G++ A+   +     S+++
Sbjct: 64  RIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSVTI 123

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMGEP L    IP+     +++  + F I    +        VSMGNPH IF+V+ D+  
Sbjct: 124 DMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEI----TAVSMGNPHVIFYVD-DIEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++ K   F EGVN+    V S   L  R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASV 238

Query: 238 CLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              KT R V   V + GG L I W  +  V MTG A+    G 
Sbjct: 239 LNGKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGV 281


>gi|319409456|emb|CBI83105.1| Diaminopimelate epimerase [Bartonella schoenbuchensis R1]
          Length = 283

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/284 (44%), Positives = 171/284 (60%), Gaps = 5/284 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F+KM G+GN+I+V DMR    NIT  AI  L+ D  THFDQIM IH       D  I 
Sbjct: 3   IPFSKMNGLGNQIIVADMRESAHNITPQAIFTLAVDPQTHFDQIMAIHPPIQNDTDFRIE 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS  ++CGNG RCV+ +L++    KSF  ET  G++  +   +G I VDMG P L
Sbjct: 63  IWNADGSIAKACGNGTRCVIEWLSNHTLNKSFRLETPAGVVEGERQSNGLICVDMGCPHL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           + K +P++R     +  +   GP     L++  +VS+GN HAIFFV+ ++    L  +G 
Sbjct: 123 NAKDMPVSREISDTNHVKITAGP-----LQDACLVSVGNLHAIFFVDHNIQSIPLEKYGP 177

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            L   P+F E  N+SIA +TS +SL LRTWERG GLT ACGSAACAS VA+     T R 
Sbjct: 178 KLEHDPLFPERCNISIAFITSQKSLTLRTWERGAGLTKACGSAACASAVAAYRRGLTERH 237

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           + V + GG L I + ++NH+ MTG+A+ E+ G  D  TG + K 
Sbjct: 238 IDVNLPGGTLAIHYREDNHIVMTGQAEYEFNGLFDPLTGAYEKD 281


>gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524974|gb|EEF94079.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
           15897]
          Length = 279

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/283 (34%), Positives = 137/283 (48%), Gaps = 16/283 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F KMEGIGN  +  D            I  +S        D +++I   +  + D  
Sbjct: 1   MLKFLKMEGIGNDYVYFDGINQDVPTDETFIKKVSNRHIGIGSDGVIIILPSE--TCDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDG----SIS 117
           +R+ N DGSE + CGNG+RC  +F+  +      T   ET+ GI   + N +     S+ 
Sbjct: 59  MRMFNLDGSEGKMCGNGIRCFSKFVYDQGLTDKTTLKIETLAGIRTCELNVEDGKVTSVC 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEPI     IP+  S  +M      I    +        VSMGNPH I +V  D   
Sbjct: 119 VDMGEPITLCSDIPVNYSKVEMVNAPIEIDGNTY----YCTAVSMGNPHVIQYV--DTLD 172

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +D+ + G       +F E VN    +V   E L +R WERG G T ACG+ ACA + AS 
Sbjct: 173 FDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGACAVMYASY 232

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +K +  V V++LGG L IE   +  +FMTG A+  +EG L 
Sbjct: 233 LNNKCDEKVDVELLGGHLQIELR-DKKIFMTGPARTTFEGTLK 274


>gi|300024818|ref|YP_003757429.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526639|gb|ADJ25108.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 289

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/277 (45%), Positives = 173/277 (62%), Gaps = 1/277 (0%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F KM G+GN+I+V+D+R      T+D   A++ D  +HFDQ+M++H  +    ++ +R
Sbjct: 7   LPFVKMNGLGNEIVVVDLRESAKVFTADEAAAIAADGKSHFDQMMVLHPAKTPGTESLVR 66

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGSE  +CGNGMRCV   L + + RK F  ET  G+L        SI+VDMGEP  
Sbjct: 67  IYNTDGSEAGACGNGMRCVGWILANDIGRKQFKVETRAGVLDTVVRDQTSITVDMGEPRF 126

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IPLA  F         IGP++   L +P VV++GNPHAIF+V+ D+  YDL   G 
Sbjct: 127 GWQDIPLAEEFRDTRAIELQIGPIDRPVLHSPSVVNVGNPHAIFWVD-DVEAYDLGRLGP 185

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+S+A+VTS  SL L+TWERG GLT ACGSAACA+ V++     T R 
Sbjct: 186 MLECHPVFPERANISLAQVTSPRSLRLKTWERGAGLTRACGSAACAAAVSAARKRLTERT 245

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V V + GG L + W DNN + MTG  + E+EG +D+ 
Sbjct: 246 VDVTLPGGVLNVAWADNNRILMTGPVEFEYEGVIDLS 282


>gi|330813437|ref|YP_004357676.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486532|gb|AEA80937.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 263

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/271 (34%), Positives = 143/271 (52%), Gaps = 8/271 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G+GN  L++D R     +++  I  L+  +N  FDQ+++I    D++ +  I   N D
Sbjct: 1   MNGLGNDFLILDNRTKPTILSNVQIRHLANRNNIGFDQLIIIESGNDSAHN--ILFYNSD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G E ++CGNG RCV  FL    K K  +  T  GIL + +N + +I++DMGEPI DW+ I
Sbjct: 59  GEEAEACGNGSRCVAHFLMEEKKIKKISINTKSGILNSIDNGNKNITIDMGEPIFDWEKI 118

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PL+   D  +        +      + + +S+GNPH IFF   D+    L   G  +  H
Sbjct: 119 PLSEEMDPSNV----CITLKDNSSFDGYALSVGNPHIIFFN--DIETDKLKIIGPEIENH 172

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F +  N++ A++    ++ +  WERG GLT ACG+ ACA+ VAS   + T R V++  
Sbjct: 173 KTFPKKCNVTFAKIIDQNNIKVNVWERGAGLTKACGTGACATAVASAKKNLTERLVNIHF 232

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             G L I+W  NN + M+G      E  + I
Sbjct: 233 QTGKLSIDWKKNNRIHMSGPVSDIQEVNISI 263


>gi|158425334|ref|YP_001526626.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571]
 gi|158332223|dbj|BAF89708.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571]
          Length = 317

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/274 (40%), Positives = 154/274 (56%), Gaps = 6/274 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G+GN+ILV+D+R   +++ + A  AL+      FDQ M+++  + A   AF+RI
Sbjct: 40  PFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRI 99

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DGSE  +CGNG RC+  +   R+  +   FE+  G+L      DG ++VDMG P L 
Sbjct: 100 LNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLG 159

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLAR        +          L    +VSMGNPHA+FFV  D    D+ + G  
Sbjct: 160 WDAIPLARPVADTSAVQIE----GFASLGPASMVSMGNPHAVFFV-PDANAVDVEALGAT 214

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+S A+V S + + L  WERG G T ACG+AACA+ V++    +T R V
Sbjct: 215 LEHHPLFPERANISFAQVLSPDHILLHVWERGAGRTRACGTAACATGVSTARTGRTGRKV 274

Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            V + GG L+I+W   + HV MTG    E+ G L
Sbjct: 275 RVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTL 308


>gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora]
 gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora]
          Length = 376

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 14/288 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           M+ F+K  G+GN  L+ID R    N        + +  L         D +++I      
Sbjct: 1   MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLCDRHFGVGADGVIIILSPTLE 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115
             D  +RI N DG+E Q CGNG+RC+ +FL    K      +  ET+ GI+V++   +  
Sbjct: 61  G-DWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKENDM 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMG PIL    IP   S  + +     I    +    +     MGNPH +  V+ D 
Sbjct: 120 IYVDMGIPILSPHDIPTRLSVGQDNIAIGLIE--TNGITWSVAAAGMGNPHIVIPVK-DA 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  FG LL +H  F    N+   +V     L LRTWERGVG+T ACG+ ACA+++ 
Sbjct: 177 EDIDIEKFGPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACAALIV 236

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +  L  +++   + + GG LL+ W   +NH+ + G AK  ++G L  +
Sbjct: 237 AHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDGVLTPE 284


>gi|218682290|ref|ZP_03529891.1| diaminopimelate epimerase [Rhizobium etli CIAT 894]
          Length = 301

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 151/297 (50%), Positives = 198/297 (66%), Gaps = 5/297 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +    + 
Sbjct: 242 GRKVTINVASATPPAALSIEWRERDDHVIMTGPAEWEWSGRLDPSTGLWSRDGTQEA 298


>gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21]
 gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21]
          Length = 292

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 18/294 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQD 57
           + ++V F+KM G+GN  +VID        ++   +    +     +   D ++ +    +
Sbjct: 3   ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDKKPEICEEICRRGFSVGADGVIFVTPASN 62

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115
              D   RI N DGSE + CGNG+RC  +++     ++ K    ET+ GI   + +  G 
Sbjct: 63  EEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGGIKEIELDVMGG 122

Query: 116 IS----VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                 VDMG P      IP+    ++       +         N   V++GNPHA+ F 
Sbjct: 123 EVRSSSVDMGIPTFKSVEIPMKTEKEEFLDAELDVNG----TTVNLTAVNVGNPHAVIFT 178

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E ++   DL   G  +  HP F E  N+    V +   +++ TWERG G T ACG+ A A
Sbjct: 179 E-NIEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTLACGTGATA 237

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
           SV+A   L K +  V V + GG LLI  ++      +FM GEA   ++G ++++
Sbjct: 238 SVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVMELE 291


>gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
 gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
          Length = 286

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F K +G GN  +VID RG              I  +         D ++ I + ++ +
Sbjct: 4   ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIFDIKQICNRQFGIGADGVIFIEEPKEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L       +    +  ET  G+ +AK      
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIN-DE 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP     +K          +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILECQNIPTT--IEKKINSIPSHEFIEKDFNNMGYAVGMGNPHLIFFVK-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +L K+ +F E  N+   ++ + +++ ++ WERG G T ACG+ ACA  VA
Sbjct: 179 ESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AKK + G +
Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSM 283


>gi|166710516|ref|ZP_02241723.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 284

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 124/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +D    L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDADLAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +    G  +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQGERFIIDSPVTAHAVERLEGGRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGMPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWN 283


>gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
 gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
          Length = 286

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59
           + F K +G GN  +VID RG              I  +         D ++ I +  + +
Sbjct: 4   ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115
             A + I N DGSE Q CGNG+RC+V +L       +    +  ET  G+ +AK      
Sbjct: 64  Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIN-DE 121

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I+V MG PIL+ + IP     +           +   F    + V MGNPH IFFV+ D+
Sbjct: 122 ITVKMGVPILESQNIPT--KIENKINSIPSHEFIQKNFKYIGYAVGMGNPHLIFFVQ-DI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L+  G +   + +F E  N+   ++ + +++ ++ WERGVG T ACG+ ACA  VA
Sbjct: 179 LSIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGACAIHVA 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
           +  L   N    V + GG L I+W  ++  V MTG AK+ + G +
Sbjct: 239 AYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSM 283


>gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20]
 gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20]
          Length = 282

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 10/284 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D      +   +   A S        D ++LI     A  D
Sbjct: 2   TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    F      +   T +T+ GI +   +        
Sbjct: 60  FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEITLDTLSGIRMLNLHLADGKVNS 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHY 178
           +   +      P    +D          P+     R     VSMGNPH + FV +D+   
Sbjct: 120 VTVDMGIPADEP--ADYDGKGAKPMKEQPIEVDGERYVGTTVSMGNPHLVIFV-NDIEAI 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L   G  L  HP+F   +N+  A++     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 GLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  R   + M GG L I W     HV MTGEA K ++GK+++
Sbjct: 237 TGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280


>gi|241206755|ref|YP_002977851.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860645|gb|ACS58312.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 301

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 150/298 (50%), Positives = 198/298 (66%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP++   L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW + ++HV MTG A+ EW G++D  TG W ++   +  
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREAE 299


>gi|56964698|ref|YP_176429.1| diaminopimelate epimerase [Bacillus clausii KSM-K16]
 gi|56910941|dbj|BAD65468.1| diaminopimelate epimerase [Bacillus clausii KSM-K16]
          Length = 282

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 140/288 (48%), Gaps = 18/288 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F KM G+GN  + I++   H     +   A+     +     D ++LI          
Sbjct: 1   MEFTKMHGLGNSYIYINLFKEHLPEERLAETAVWLADPNRGIGSDGMILIGPSTS--CAI 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN-----RDGS 115
            +RI N DGSE ++CGNG+RCV ++         K+F+ ET+ G + A        R G+
Sbjct: 59  KMRIFNNDGSEAKNCGNGLRCVAKYSYEHGLVHEKAFSIETLGGPVFATVEVDEEGRVGA 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++++MG+P L  + IP+    DK            +        VSMGNPHA+ FVE  +
Sbjct: 119 VAINMGQPRLTRQAIPMIGEGDKPVVGEKLEA---NGETVQVTAVSMGNPHAVMFVEQ-I 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               + S G ++ KH  F + VN     V S   L  R WERG G+T ACG+ ACA+VVA
Sbjct: 175 EKAPVESLGPVIEKHSAFPDWVNAEWVEVVSETELHFRVWERGSGITQACGTGACAAVVA 234

Query: 236 SGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S      K    V+V +LGG L I W +N  V M G A+    G + +
Sbjct: 235 SVLNGYAKQGVPVTVHLLGGDLTIVWQENGDVLMRGPAEYICTGNVFL 282


>gi|288553989|ref|YP_003425924.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4]
 gi|288545149|gb|ADC49032.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4]
          Length = 282

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  + +D+         + + A+     +     D ++L+     A V  
Sbjct: 1   MKFTKMHGLGNSYIYVDLFKETLEEEQLAALAVEVADKNKGIGSDGMILVCPSDVAPV-- 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDM 120
            +R+ N DGSE ++CGNG+RCV +F       K  TF  ET+ G++ A  + +G     +
Sbjct: 59  KMRVFNNDGSEAKNCGNGLRCVAKFAYEHGYVKDQTFQIETLGGLVTATVHIEGERVHTV 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179
              +   +L   +        ++    P      +     VSMGNPH +FFVE D+    
Sbjct: 119 TVNMGKPRLTRESLPMLGSSTEKIVAEPFEVAETKLELTAVSMGNPHGVFFVE-DINQAP 177

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G ++ K   F E +N+    V S   L  R WERG G+T ACG+ ACA+VVAS   
Sbjct: 178 VDTLGPIIEKDERFPEWINVEFVEVVSESELHFRVWERGSGITQACGTGACAAVVASILN 237

Query: 240 HKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +N+  +V+V +LGG L IEW ++  V MTG A+   EG  +
Sbjct: 238 GHSNKGESVTVHLLGGDLEIEWTESGDVLMTGAAEVICEGVFE 280


>gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
           17241]
 gi|167667376|gb|EDS11506.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
           17241]
          Length = 276

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  + I+          +    +S        D ++LI     A  D  +R+ N 
Sbjct: 1   MHGLGNDYVYINCLNQKLKHPEEIARIVSDRHFGIGSDGLILICPSDRA--DFQMRMFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-------RDGSISVDMGE 122
           DGSE   CGNG+RCV +++  +   +  + +      V   +          S+ VDMG+
Sbjct: 59  DGSEGNMCGNGIRCVGKYVYDQGLTERTSIQIETKSGVRSLDLTLGPDGTVSSVRVDMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L  K IP+   +D        +    +L       VSMGNPHA+ F + D+ +  LA 
Sbjct: 119 ASLKAKDIPVETDYDDFISQPMLVRGEVYL----VTCVSMGNPHAVVFCD-DVDNLPLAE 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G L  +H  F EGVN    ++   ++L +R WERG G T ACG+ ACASV A+      
Sbjct: 174 IGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASVAAAIVNENC 233

Query: 243 N--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           +    V+V++LGG L I  H +  V M G A   ++G +++  
Sbjct: 234 DFDEEVTVRLLGGDLKITVHSDYTVLMDGPAVHVFDGDIELDA 276


>gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
 gi|123524732|sp|Q2RK34|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
          Length = 279

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 16/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G+GN  ++++        ++   A            D ++L+   + A     
Sbjct: 1   MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQAR--LR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117
           +RI N DGSE + CGNG+RC  R++      + +    ET+ GI+  +   +G     + 
Sbjct: 59  MRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEELQVETLAGIIKPRLILEGGRVAGVR 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P L+ + IP+A +   +  +   +             VSMGNPH +FFVE D+  
Sbjct: 119 VDMGAPHLEREQIPMAGTGSPVLDEPIEVNG----ETWRGTCVSMGNPHCVFFVE-DVTG 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++  HP+F    N+   +V + E L +R WERG G T ACG+ ACA+ VA  
Sbjct: 174 APVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAAVAGA 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
              ++NR V+V +  G L IEW   +NHV+MTG A + + G   + 
Sbjct: 234 LTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPLD 279


>gi|327190189|gb|EGE57294.1| diaminopimelate epimerase protein [Rhizobium etli CNPAF512]
          Length = 351

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 150/298 (50%), Positives = 200/298 (67%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 52  SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 111

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 112 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 171

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V++D+  YDLA 
Sbjct: 172 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDEDVMSYDLAR 231

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 232 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 291

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +  +    
Sbjct: 292 GRTVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDADRGAE 349


>gi|332998247|gb|EGK17849.1| diaminopimelate epimerase [Shigella flexneri K-272]
          Length = 279

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 10/256 (3%)

Query: 30  ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88
            + + I  L+       FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF+
Sbjct: 30  FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89

Query: 89  TSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
             +    ++     T  G +V     D  + V+MGEP  +   +P      + ++     
Sbjct: 90  RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPF-----RANKAEKTY 144

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                       VVSMGNPH +  V+ D+    + + G +L  H  F E  N+   +V  
Sbjct: 145 IMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVETLGPVLESHERFPERANIGFMQVVK 203

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265
            E + LR +ERG G T ACGS ACA+V         +  V V++ GG L I W    H +
Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPL 263

Query: 266 FMTGEAKKEWEGKLDI 281
           +MTG A   ++G + +
Sbjct: 264 YMTGPAVHVYDGFIHL 279


>gi|239834643|ref|ZP_04682971.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
 gi|239822706|gb|EEQ94275.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301]
          Length = 321

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 9/274 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +VID R      +SD I  +         DQ+++    +       +RI
Sbjct: 49  FIKCNGLGNDFVVIDGRSTPFRKSSDYIQWVCNRHVGIGGDQLLVFEAPESPEASVRLRI 108

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DG E ++C N  RC    +    +R     ET+ G + AK   D  +S+ +G    D
Sbjct: 109 YNIDGQEAETCLNATRCAAWLIMEETERDEAVIETLGGPIRAKRAGDHKVSLSIGNAKWD 168

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W  IPLA S +                L +P  +++GNPH ++FV+ +L   D+A+  + 
Sbjct: 169 WPEIPLAGSLESAGAQL------ESGPLVSPIAINIGNPHLVYFVQ-NLGGLDIAALADP 221

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-A 245
           + K     E  N+ +A VT  +S+ L  +ER   LT ACGS ACA+V+A+      +   
Sbjct: 222 VQKSGYLPEQANIGVAEVTGPDSIRLVVYERPGILTQACGSGACAAVLAARRAGLISSDK 281

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           V+V   GG L +E  D     +TG     ++G +
Sbjct: 282 VTVYAPGGQLEVEVFDGETFMLTGPVDVTFDGYI 315


>gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
 gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
          Length = 307

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 31/305 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSD-AINAL--STDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G GN  + +D        +    I  +          D ++ I+   D S+D  +
Sbjct: 3   FTKMHGCGNDYVYVDGSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDFEM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-------VAKENRDGSIS 117
            + N DGS  + CGNG+RCV +++             +           +  +N   S+ 
Sbjct: 63  EMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVIVSAGKKKYINLEIGTDNLVFSVK 122

Query: 118 VDMGEPILDWKLIPLARSFDK-----------------MDRDRFHIGPVNHLFLRNPFVV 160
           VDMG PIL    +P+A   D                  M         +          V
Sbjct: 123 VDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDGKEWKITCV 182

Query: 161 SMGNPHAIFFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
           SMGNPHA+ F+ +D+    +++   G     + +F    N    +V    ++ +R WERG
Sbjct: 183 SMGNPHAVVFLPEDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNVHMRVWERG 242

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWE 276
            G T ACG+  CA+ VA      T+  V+V +LGG +   W  N  + V M G A   + 
Sbjct: 243 TGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIMEGPATTVFT 302

Query: 277 GKLDI 281
           G++D+
Sbjct: 303 GEIDL 307


>gi|190893802|ref|YP_001980344.1| diaminopimelate epimerase [Rhizobium etli CIAT 652]
 gi|190699081|gb|ACE93166.1| diaminopimelate epimerase protein [Rhizobium etli CIAT 652]
          Length = 301

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 150/298 (50%), Positives = 199/298 (66%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGQ 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW + ++HV MTG A+ EW G+LD  TG W +  +    
Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDADRGAE 299


>gi|149908509|ref|ZP_01897171.1| diaminopimelate epimerase [Moritella sp. PE36]
 gi|149808343|gb|EDM68280.1| diaminopimelate epimerase [Moritella sp. PE36]
          Length = 269

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 130/275 (47%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +    +D I  L+  +    FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDCVTQNVFFNNDNIRRLADRNTGIGFDQLLVVEAPYDPDLDFHYRIYNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC   F+  +           T  G +  +   DG ++V+MG P L  
Sbjct: 61  DGSEVEQCGNGARCFASFVRHKGLTNKTKIAVSTSGGKISLQVEYDGQVTVNMGVPELAP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP      +  +                  V++GNPH +  V+ D+    LA  G+ +
Sbjct: 121 DKIPF-----RATKQEKTYILRALDSTVFCGAVAIGNPHCVTIVD-DIETAPLADLGHAI 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
           A H  F   VN    +V S +   LR +ERGVG T ACG+ ACA+ V      K  + V 
Sbjct: 175 AHHERFPNRVNAGFMQVLSPDHAKLRVYERGVGETQACGTGACAAAVVGQLQGKLGQDVC 234

Query: 248 VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281
           +++ GG L I W      VFMTG A   ++G+++I
Sbjct: 235 IELPGGKLQISWRGPGTPVFMTGPATHVYDGQINI 269


>gi|332559405|ref|ZP_08413727.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N]
 gi|332277117|gb|EGJ22432.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N]
          Length = 279

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 103/277 (37%), Positives = 136/277 (49%), Gaps = 16/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID RG    + T+    AL        FDQ+  I        D  + 
Sbjct: 12  FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+MG P L
Sbjct: 70  FWNSDGSRSGACGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNMGAPQL 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLAR+ +                   P  V MGNPH +FFVE D    DLA  G 
Sbjct: 130 LWSEIPLARAMETDSL----------PLEGGPAAVGMGNPHCVFFVE-DAEAVDLAGRGA 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+     T R 
Sbjct: 179 SVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 239 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274


>gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
 gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
          Length = 278

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 11/277 (3%)

Query: 8   FAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +V++       +++++ A +          DQ +++   + A  +  + 
Sbjct: 6   FTKMHGCGNDFIVVNTFRETVPEDLSALAQDMCQRRFAVGADQFIILGSAESADANFRMD 65

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I+N DGS+V+ CGN +RC   +      ++      ET+ GI  A    DG++ + +  P
Sbjct: 66  ILNADGSKVEMCGNALRCAAVYAKREGLIQSDELKIETMTGISFATILEDGNVRIAVAVP 125

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 + L           F        +      VS+GNPHA+ +V+ ++   +L   
Sbjct: 126 STTIVDVGLDSE-----HPLFGTPLSAEQYTFPMTAVSVGNPHAVTYVD-EIDLLNLEKI 179

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L   H +F    N+   +V     +++R WERG G T ACGS ACA  VAS       
Sbjct: 180 GPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVASVLHGVAK 239

Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279
             + V + GG L IEW      V+M+G A   ++   
Sbjct: 240 SPMKVSLKGGDLEIEWEGRGKPVYMSGSASFVFDATW 276


>gi|221640409|ref|YP_002526671.1| diaminopimelate epimerase [Rhodobacter sphaeroides KD131]
 gi|221161190|gb|ACM02170.1| Diaminopimelate epimerase [Rhodobacter sphaeroides KD131]
          Length = 279

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 103/277 (37%), Positives = 136/277 (49%), Gaps = 16/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID RG    + T+    AL        FDQ+  I        D  + 
Sbjct: 12  FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 69

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RCV  +L   + R   T  T RG L A+   DG ++V+MG P L
Sbjct: 70  FWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNMGAPQL 129

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLAR+ +                   P  V MGNPH +FFVE D    DLA  G 
Sbjct: 130 LWSEIPLARAMETDSL----------PLEGGPAAVGMGNPHCVFFVE-DAEAVDLAGRGA 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+     T R 
Sbjct: 179 SVETDPLFPECTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 239 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274


>gi|153806182|ref|ZP_01958850.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185]
 gi|149130859|gb|EDM22065.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185]
          Length = 270

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 127/282 (45%), Gaps = 21/282 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D            AI           D ++LI +   A  D
Sbjct: 2   TKKIKFTKMHGAGNDYIYVDTTNYPIAAPEKKAIEWSKFHTGIGSDGLILIGNSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGNG RCV    +      +   T +T+ GI + K + +G     
Sbjct: 60  FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLHVEGKTVT- 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                        A + D               +      VSMGNPH + FV+ D+   +
Sbjct: 119 -------------AVTVDMGSPLETGEVHFEDKYPFRSTRVSMGNPHLVTFVD-DITQIN 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G  L  H +F +  N+  A++   +++ +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 165 LPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
             T R   + M GG + IEW + + H+ MTG A K ++G+++
Sbjct: 225 ELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEIE 266


>gi|257413877|ref|ZP_04744546.2| diaminopimelate epimerase [Roseburia intestinalis L1-82]
 gi|257201933|gb|EEV00218.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
          Length = 288

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 17/289 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M+ +M  F KM+  GN  + ID    +  N+   A            D ++LI       
Sbjct: 1   MRITM-KFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG--- 114
            D  +R+ N DGSE + CGN +R V +++       +     ET+ G+            
Sbjct: 59  -DFRMRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLV 117

Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            +I  D+GEP L+ K+IP+  + D+       +             VS GNPH   FV+ 
Sbjct: 118 SNIRADIGEPRLNTKVIPVNTNLDQFVEQPVEVLDKTFHI----TAVSWGNPHCAMFVD- 172

Query: 174 DLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            +   D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +
Sbjct: 173 SVADLDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTA 232

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           VVA     +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 233 VVAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 281


>gi|188586527|ref|YP_001918072.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|229813235|sp|B2A663|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 299

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 25/297 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--VDAF 63
           + F KM G+GN  ++  M+    N    A            D +++    ++++   D  
Sbjct: 1   MKFEKMHGLGNDFIL--MKDFQRNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQ 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS------ 115
           +RI N DGSE + CGN +RC+ ++   T     K     T  GI   +   +        
Sbjct: 59  MRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKRLAIATTAGIKRVEIVENFDLMGEIN 118

Query: 116 -----------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
                      + V+M +P+L    IPLA   D+ D  R       +        VS G 
Sbjct: 119 LSGMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYGIYYL-TEVSTGP 177

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
           PHA+ FV++ L    L   G ++ KH +F  G N+   +V S   L ++ WERG G T A
Sbjct: 178 PHAVIFVQNLLPEEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLA 237

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           CG+ ACA VVA+      N    V++ GG L I W +N   ++M G A+  + G+L+
Sbjct: 238 CGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGELN 294


>gi|160889460|ref|ZP_02070463.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492]
 gi|317479966|ref|ZP_07939081.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36]
 gi|156860977|gb|EDO54408.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492]
 gi|316903911|gb|EFV25750.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36]
          Length = 282

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 10/284 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D      +   +   A S        D ++LI     A  D
Sbjct: 2   TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    F      +     +T+ GI +   +        
Sbjct: 60  FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEIALDTLSGIRMLNLHLADGKVNS 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHY 178
           +   +      P    +D          P+     R     VSMGNPH + FV +D+   
Sbjct: 120 VTVDMGIPADEP--ADYDGKGAKPMKEQPIEVDGERYVGTTVSMGNPHLVIFV-NDIEAI 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G  L  HP+F   +N+  A++     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 DLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
             +  R   + M GG L I W     HV MTGEA K ++GK+++
Sbjct: 237 TGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280


>gi|116254272|ref|YP_770110.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258920|emb|CAK10029.1| putative diaminopimelate epimerase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 304

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 150/298 (50%), Positives = 197/298 (66%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 5   SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 65  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKVFTFQTVAGILNAVEHEDGTISVDMGR 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP++   L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 125 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 185 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 244

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +        L IEW + ++HV MTG A+ EW G++D  TG W ++   +  
Sbjct: 245 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREAE 302


>gi|188582087|ref|YP_001925532.1| diaminopimelate epimerase [Methylobacterium populi BJ001]
 gi|229807500|sp|B1ZDT1|DAPF_METPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|179345585|gb|ACB80997.1| Diaminopimelate epimerase [Methylobacterium populi BJ001]
          Length = 296

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 130/286 (45%), Positives = 167/286 (58%), Gaps = 8/286 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM G GN I+V+D+RG    +      A++ D ++ FDQ+M++HD      DAF+RI
Sbjct: 8   RFLKMHGAGNAIVVLDLRGTSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRI 67

Query: 67  INCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            N DGSE  +CGNG RCV         +    +    T ET  G++  K   D S +VDM
Sbjct: 68  YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDM 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D   +DL
Sbjct: 128 GQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDTFDL 187

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G LL  HP+F E  N+SIA+VTS +++ LR WERG GLT ACG+AACA+VVA+  L 
Sbjct: 188 GRIGPLLEAHPIFPERANISIAQVTSRDTIKLRVWERGAGLTLACGTAACATVVAAARLR 247

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
              RA  V + GG L IEW  ++HV MTG    E EG L  D+  G
Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVFLEGEGSLSPDLFAG 293


>gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
 gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
          Length = 272

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/278 (32%), Positives = 134/278 (48%), Gaps = 15/278 (5%)

Query: 11  MEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M GIGN  + ++      +   S AI           D +++I    D   D  +R+ N 
Sbjct: 1   MHGIGNDYIYVNGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPSDD--CDFKMRMFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISVDMGE 122
           DGSE + CGN  RC+ +F+  +    +   T ET+ G+   K     +    +++VDMGE
Sbjct: 59  DGSESEMCGNASRCIGKFVYDKGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDMGE 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +  LIP   +   +  +       N     N   VSMGNPHA+ F    +   DL  
Sbjct: 119 PIFESGLIPTTINKPSIINEPVTF---NSEIKYNITCVSMGNPHAVIFTTG-IDKLDLNK 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +     +F    N     V S + + +R WERG G T ACG+ ACASVVA+     T
Sbjct: 175 IGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVAAVLNGHT 234

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            R  +V++LGG L IEW + +N V++TG A   +EG +
Sbjct: 235 GRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272


>gi|227498959|ref|ZP_03929098.1| diaminopimelate epimerase [Acidaminococcus sp. D21]
 gi|226904410|gb|EEH90328.1| diaminopimelate epimerase [Acidaminococcus sp. D21]
          Length = 289

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 126/287 (43%), Gaps = 13/287 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  L ++               +S    +   D ++ I     A  D  +
Sbjct: 1   MKFTKMQGCGNDYLYVNCMDGMIPEPGKISAYVSPRHLSVGSDGLICICPSDKA--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           R+ N D SE   CGNG RC+ +F+  +   ++   T ET+ GI     +       S +V
Sbjct: 59  RMFNADASEGMMCGNGSRCIAKFVYDKGLTQKNPITLETLSGIKTIAMDVADGKVVSATV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PI D   IP+         +   +             VSMGNPH + FVE D+   
Sbjct: 119 DMGVPITDPSSIPMTWEKSICLDETITVTVDGAPLSLRGTGVSMGNPHFVTFVE-DVATA 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++     F E VN+    +     +  R WERG G T ACG+ ACA    +  
Sbjct: 178 PVEKVGRVIEHSSYFPERVNVEFVEIVDDNHVKFRVWERGSGETLACGTGACAVAYTAIT 237

Query: 239 LHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           L K  R    ++V+ +GG L + +  + H+ M G A   +EG+++I 
Sbjct: 238 LGKAGRRDQFLTVEAVGGPLQLNYRSDGHMMMKGPAVTVYEGEMEIP 284


>gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
 gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
          Length = 301

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 91/288 (31%), Positives = 134/288 (46%), Gaps = 12/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           +   KM G+GN  L +D                 A+S        D ++L+   ++A   
Sbjct: 15  LRLTKMHGLGNNYLFLDGLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGS---- 115
             +RI N DGSE + CGNG+RC+ R +  R   +   FT ET  G +  + + +      
Sbjct: 75  FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRAEEFTVETGAGPIRPRLHLENGEVVA 134

Query: 116 ISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           ++VDMG P L+   IP+A    ++       +             +SMGNPH      DD
Sbjct: 135 VTVDMGVPRLERGAIPMAGPAGERAVEVPLEVEAAGERRTFTVTALSMGNPHC-VVFVDD 193

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DLA  G     HP F + VN    +V S + + +R WERG G T ACG+ ACA  V
Sbjct: 194 VAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGPTLACGTGACAVAV 253

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           A     +T R V+V++ GG L I W ++ HV+MTG A    +   D +
Sbjct: 254 AGAVTGRTGRRVTVELPGGALDIRWDEDGHVYMTGPAAYIADVTYDPR 301


>gi|88658257|ref|YP_506881.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599714|gb|ABD45183.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas]
          Length = 267

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 95/278 (34%), Positives = 141/278 (50%), Gaps = 12/278 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R     NI   AI   +       DQI++I + + A  D F
Sbjct: 1   MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  +  + T E    IL      +  + V++G  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP ++  D +        P+    L +P  +++GNPHAIFFV+  +    L   
Sbjct: 117 KFHWTDIPTSQECDTL------HLPIELEMLSDPVGINVGNPHAIFFVD-SIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S + + LR WERG G TA+CGS ACA++VA+     TN
Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +   V + GG LLI +  +N + M G     + G   +
Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYIFNGIYRV 267


>gi|197336395|ref|YP_002157270.1| diaminopimelate epimerase [Vibrio fischeri MJ11]
 gi|197317885|gb|ACH67332.1| diaminopimelate epimerase [Vibrio fischeri MJ11]
          Length = 261

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/267 (33%), Positives = 132/267 (49%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + D I  L+       FDQ++++    D   D   RI N DGSEV+ C
Sbjct: 1   MVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+  +    + S +  T +G ++ K   D  I+V+MGEP+ +   IP    
Sbjct: 61  GNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEPVFEPNKIPFKA- 119

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                 ++ ++  V+   L +   VSMGNPH    V DD+  YD+  +G L+  H  F E
Sbjct: 120 ---TQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKYGPLVESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
            VN    ++ S   + LR +ERG G T ACGS AC +V            V V + GG L
Sbjct: 175 RVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLGEEVKVSLPGGDL 234

Query: 256 LIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            I W  +   +FMTG A   ++G+L I
Sbjct: 235 YIVWQGSGKPLFMTGPATHVYDGQLSI 261


>gi|167648823|ref|YP_001686486.1| diaminopimelate epimerase [Caulobacter sp. K31]
 gi|189082829|sp|B0T542|DAPF_CAUSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|167351253|gb|ABZ73988.1| Diaminopimelate epimerase [Caulobacter sp. K31]
          Length = 289

 Score =  198 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 9/280 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-------NTHFDQIMLIHDFQDASV 60
           F KM G+GN  +VI+      + T++ I A++              DQ++ I   +    
Sbjct: 5   FLKMNGLGNDFVVIETLTQPFHPTAEEIRAIAKRPNAKEGEGGIGCDQVIAIDPPRAEGA 64

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A++R  N DG E  +CGNG RCV   L    ++ S  F+T+ G L  K   D  ++VDM
Sbjct: 65  SAYVRFWNSDGEETGACGNGTRCVAWLLMQSGQKDSVAFDTVAGRLSGKMAGDKLVTVDM 124

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P L W  IPLA   D +  +   +GP++   +  P  VSMGNPH +FFV+  +     
Sbjct: 125 GQPGLAWNQIPLAEEMDTVGIE-LQVGPIDAPLVHTPGCVSMGNPHVVFFVDAPVSDAFA 183

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+L+  HP+F EGVN+  A + + + + L+ WERG GLTAACG+ ACA+ VA+    
Sbjct: 184 RGTGSLVEHHPLFPEGVNVGFAHIAARDHIKLKVWERGAGLTAACGTGACAAQVAAVRRG 243

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            T+R   V+   G L IEW + + HV MTG    E+ GKL
Sbjct: 244 LTDRVAKVEFESGALTIEWREADGHVIMTGPVTMEFVGKL 283


>gi|291538363|emb|CBL11474.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4]
          Length = 284

 Score =  198 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + ID    +  N+   A            D ++LI        D  +
Sbjct: 1   MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           R+ N DGSE + CGN +R V +++       +     ET+ G+             +I  
Sbjct: 59  RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GEP L+ K+IP+  + D+       +             VS GNPH   FV+  +   
Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDKTFHI----TAVSWGNPHCAMFVD-SVADL 173

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +VVA  
Sbjct: 174 DVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
              +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|291535865|emb|CBL08977.1| diaminopimelate epimerase [Roseburia intestinalis M50/1]
          Length = 284

 Score =  198 bits (503), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + ID    +  N+   A            D ++LI        D  +
Sbjct: 1   MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           R+ N DGSE + CGN +R V +++       +     ET+ G+             +I  
Sbjct: 59  RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GEP L+ K+IP+  + D+       +             VS GNPH   FV+  +   
Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDKTFHI----TAVSWGNPHCAMFVD-SVADL 173

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+  +G  +     +F    N++ A     + + +R WERG G T  CG+    +VVA  
Sbjct: 174 DVERYGKTIEHMTSLFPNKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
              +T+R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|77464515|ref|YP_354019.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1]
 gi|123591013|sp|Q3IZB6|DAPF_RHOS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|77388933|gb|ABA80118.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1]
          Length = 276

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 102/277 (36%), Positives = 135/277 (48%), Gaps = 16/277 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID RG    + T+    AL        FDQ+  I        D  + 
Sbjct: 9   FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 66

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGN  RCV  +L   + R      T RG L A+   DG ++V+MG P L
Sbjct: 67  FWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVNLVTARGRLHARRREDGLVAVNMGAPQL 126

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPLAR+ +                   P  V MGNPH I+FVE D    DLA  G 
Sbjct: 127 LWSEIPLARAMETDSL----------PLEGTPSAVGMGNPHCIYFVE-DAEAVDLAGRGA 175

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +   P+F E  N+  A +   + L LR WERG G+T ACGS ACA+ VA+     T R 
Sbjct: 176 AVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 235

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           V ++M GG L ++W D   V+++G   + +EG L  +
Sbjct: 236 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 271


>gi|182680304|ref|YP_001834450.1| diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|229807511|sp|B2IEM1|DAPF_BEII9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|182636187|gb|ACB96961.1| Diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 297

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 110/282 (39%), Positives = 147/282 (52%), Gaps = 9/282 (3%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM G+GN I+V+D+RG    I++    A+      HFDQ+M++HD       AF+RI N
Sbjct: 10  TKMNGLGNAIVVLDLRGTGIVISAAEARAIGQGKGLHFDQLMVLHDPLSPGSAAFMRIYN 69

Query: 69  CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            DGS   +CGNG RCV                 ET  G L   +  +   SVDMG+P   
Sbjct: 70  IDGSLAGACGNGTRCVAWTLLREDHRIGAELMLETAAGQLACLKLAEDRFSVDMGKPAFA 129

Query: 127 WKLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           W  IPLA      +     RD   + PV+   LR   +V+MGNPHA+ FV  D    DLA
Sbjct: 130 WDAIPLAHPVPDTNAVDLARDLAVLPPVDPDALRKASMVNMGNPHAVLFV-ADQDACDLA 188

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G +L  HP+F +  N+SIA V S + + L+ WERG G T ACGSAACA++VA+     
Sbjct: 189 LVGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGL 248

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
             R   + + GG L I W   ++HV MTG    E+  +LD  
Sbjct: 249 AAREARISLPGGDLTIAWRAADDHVIMTGPVTFEFTTRLDPS 290


>gi|323167557|gb|EFZ53263.1| diaminopimelate epimerase [Shigella sonnei 53G]
          Length = 279

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 10/256 (3%)

Query: 30  ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88
            + + I  L+       FDQ++++    D  +D   RI N DGSEV  CGNG RC  RF+
Sbjct: 30  FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89

Query: 89  TSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
             +    ++     T  G +V     D  + V+MGEP  +   +P      + ++     
Sbjct: 90  RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPF-----RANKAEKTY 144

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                       VVSMGNPH +  V+ D+    + + G +L  H  F E  N+   +V  
Sbjct: 145 IMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVETLGPVLESHERFPERANIGFMQVVK 203

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265
            E + LR +ERG G T ACGS ACA+V            V V++ GG L I W    H +
Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPL 263

Query: 266 FMTGEAKKEWEGKLDI 281
           +MTG A   ++G + +
Sbjct: 264 YMTGPAVHVYDGFIHL 279


>gi|218513924|ref|ZP_03510764.1| diaminopimelate epimerase [Rhizobium etli 8C-3]
          Length = 297

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 150/296 (50%), Positives = 199/296 (67%), Gaps = 5/296 (1%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    
Sbjct: 1   MMSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGT 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DAFI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDM
Sbjct: 61  DAFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P+ DW  IPL+  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDL
Sbjct: 121 GKPVFDWDRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A FG LL  HPMF E  N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    
Sbjct: 181 ARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTG 240

Query: 241 KTNRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           +T R V++ +        L IEW + ++HV MTG  + EW G+LD  TG W +  +
Sbjct: 241 RTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPTEWEWSGRLDPATGLWSRDAD 296


>gi|90421125|ref|ZP_01229027.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334617|gb|EAS48397.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1]
          Length = 304

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 145/284 (51%), Positives = 193/284 (67%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V FA+M G+GN+I+V+D+RG    I++ A  AL+ D  T FDQIM IHD +    DA++R
Sbjct: 13  VAFARMNGLGNEIVVVDLRGSAARISAAAARALAEDPATRFDQIMAIHDPRLDGTDAYVR 72

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IIN DGSE ++CGNG RCVV+ L +   R+ FTFET  GIL A E  DG I+VDMG P  
Sbjct: 73  IINRDGSEAEACGNGTRCVVQALAAETGRRDFTFETRAGILTAFERDDGLIAVDMGRPRF 132

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F         IGP++   L +P V SMGNPHAIF+V+ D++ Y+L  FG 
Sbjct: 133 GWSEIPLSEEFSDTRAIELQIGPIDAPILHSPSVASMGNPHAIFWVDRDVWSYELDRFGP 192

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           +L  HP+F E  N+SIA+VT+ ++L LRTWERGVGLT ACGSAACA+ V++    +T R 
Sbjct: 193 VLENHPLFPERANISIAQVTAPDALTLRTWERGVGLTRACGSAACAAAVSATRTRRTGRI 252

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           V+V + GG LLI+W D++HV MTG A+  W G+LD  TG +++ 
Sbjct: 253 VTVTVPGGDLLIDWRDDDHVIMTGPAEWNWSGRLDPATGAYVRD 296


>gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
 gi|29839324|sp|Q8ENX2|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
          Length = 286

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 17/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN  + ID+     +  +  D    +S        D ++LIH   DA  D 
Sbjct: 3   IPFTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA--DV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK------ENRDGSI 116
            +RI N DGSE +SCGNG+RC  ++        +  F       + +       N+   +
Sbjct: 61  GMRIFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKKFHIQTKANIVEAEVSVDNNKVNQV 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           ++DMGEPIL    IP+  + D    +   +      ++     VSMGNPH +FFV+ D+ 
Sbjct: 121 TIDMGEPILARNEIPMMGNNDVKVVNEPFVVAGETQYI---TAVSMGNPHGVFFVD-DIE 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G  + K   F E +N+    V S   L+ R WERG G+T ACG+ ACA+VVA+
Sbjct: 177 KAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVVAA 236

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
               K   +  + V + GG L IEW ++NHV+MTG A+    G
Sbjct: 237 TLNEKVTKSHPIVVHLAGGDLNIEWKEDNHVWMTGPAEVIATG 279


>gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 277

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 14/283 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +V +     + +    A            D ++++        D  +
Sbjct: 1   MKFTKMNGLGNDFIVFENLDNEEYDYDILARKLCDRHFGIGADGLLIVEPS--GIADIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSI----SV 118
           RIIN DGSE + CGNG RC  +++      K+   + ET+ GI++ +      +     V
Sbjct: 59  RIINSDGSEAEMCGNGARCFAKYVYENGIVKKDKMSVETLSGIIMPELIFKDDVVEKVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG PI    +IP+         +   I    ++       + +G PH I FV + +   
Sbjct: 119 HMGSPIFRTDMIPVKTDKKSFIEETIKIDGRTYI----VTSLLVGVPHTIIFV-NSIDKN 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            + + G L+ K  +F  G N+   +V    ++ +RTWERG GLT ACG+ ACAS VAS  
Sbjct: 174 MILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACASAVASAL 233

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             KT R V V    G L IEW  +N++++TG A++ + G++ I
Sbjct: 234 TEKTKRNVYVHFKKGDLYIEWLLDNNIYLTGIAEEVFTGEIKI 276


>gi|73666659|ref|YP_302675.1| diaminopimelate epimerase [Ehrlichia canis str. Jake]
 gi|72393800|gb|AAZ68077.1| diaminopimelate epimerase [Ehrlichia canis str. Jake]
          Length = 267

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 10/273 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+DF KM G  N  ++ID R    N   D     +       DQI++I   + A  D F+
Sbjct: 1   MIDFIKMHGTLNDFVIIDCRSKFYN-NIDYKAIANRKTGIGCDQIIVITKSEKA--DCFM 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS+V+ CGN  RCV   L++  ++ + T E    IL      + ++ V+MG   
Sbjct: 58  HIYNADGSKVEMCGNAARCVAYLLSNEKQKNNVTIELADRILSCLRISENTVQVNMGIAK 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IP+++  D +        P+    L +P  +++GNPHAIFFV + +    L   G
Sbjct: 118 FHWTDIPISQECDTL------HLPITLEMLSDPVGINVGNPHAIFFV-NSIETIPLDKLG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  H +F +  N+SIA + S   + LR WERG G TA+CGS ACA++VA+     T+ 
Sbjct: 171 PKLENHNLFPKRANISIAEILSRNKIKLRVWERGTGETASCGSGACAALVAAVRRQYTDT 230

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             ++ + GG LLI + ++N + M G     + G
Sbjct: 231 TATICLQGGNLLISYQNDNTILMEGMVSYTFHG 263


>gi|319407863|emb|CBI81516.1| Diaminopimelate epimerase [Bartonella sp. 1-1C]
          Length = 283

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/290 (44%), Positives = 174/290 (60%), Gaps = 8/290 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++    F+KM G+GNKI+V DMR    NIT  AI AL+ +  T+FDQ+M IH      +
Sbjct: 1   MET---PFSKMNGLGNKIIVADMRESTHNITLQAILALAKNPQTYFDQLMTIHPSIKNEI 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +  I I N DGS+ Q+CGNG RCV+ +LT     +SF  ET  GI+  K   +G ISV+M
Sbjct: 58  NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  + K +P+AR     +      GP     L++  +VS+GN HAIFFVE+++    L
Sbjct: 118 GRPNFNAKNMPIAREVADTNHVEITAGP-----LKDASLVSIGNLHAIFFVENNIEDIPL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  L   P+F E  N+SIA VTS  SL LRTWERG GLT ACGSAACAS V +    
Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            T R + V +LGG L I + +++H+ MTG  + E+ G L+  TG + K +
Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLNPLTGDYKKDS 282


>gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
 gi|217986557|gb|EEC52892.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
          Length = 283

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 130/283 (45%), Gaps = 10/283 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM G GN  + +D       N    +    +       D ++LI        D
Sbjct: 2   TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKEWSALHTGIGSDGLVLIGRS--GKAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    +      +   T +T+ GI   K + + +    
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVENNKVDT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178
           +   +      P    +D  +       P+    +R     VSMGNPH + FV +D+   
Sbjct: 120 VTVDMGIPACEP--ACYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV-NDITKV 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G  L  HP F   +N+  A+V     + +R WERG G+T ACG+ ACA+ VA+  
Sbjct: 177 DLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACATAVAAFL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             ++ R  +V M GG L IEW     HVFMTG A + ++G+ +
Sbjct: 237 TGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279


>gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii
            L2-63]
          Length = 1350

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 144/289 (49%), Gaps = 20/289 (6%)

Query: 5    MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            M+ F KM+GIGN  +          N  + A+           D I+L+   + A  DA 
Sbjct: 1070 MLKFTKMQGIGNDYIYCSTFDQEISNPEALAVRLSDRHFGIGGDGIILVCPSKVA--DAK 1127

Query: 64   IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVAKE----NRDG 114
            +++ N DGSE + CGNG+RCV +FL              T ET+ GI   K      +  
Sbjct: 1128 MKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAYTSGGKVN 1187

Query: 115  SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
             + VDMG+ ILD K IP+A   DK+      I   N+    N   VSMGNPH + F++ D
Sbjct: 1188 RLRVDMGKAILDPKEIPVALDGDKVVDRTVEIAGKNY----NITCVSMGNPHCVVFMD-D 1242

Query: 175  LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
            + + D+ + G       +F E VN     V    ++ +R WERG G T ACG+ ACA  V
Sbjct: 1243 IDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETWACGTGACAVAV 1302

Query: 235  ASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+      K    + +K+ GG L+I +  +  V+MTG A+K +EG++++
Sbjct: 1303 AACENGFCKKGEDIKIKLKGGDLIINYT-DETVYMTGNAEKVFEGEVEV 1350


>gi|150400642|ref|YP_001324408.1| diaminopimelate epimerase [Methanococcus aeolicus Nankai-3]
 gi|166225729|sp|A6UTH4|DAPF_META3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|150013345|gb|ABR55796.1| Diaminopimelate epimerase [Methanococcus aeolicus Nankai-3]
          Length = 295

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +VI   D     ++  ++    +     +   D ++ +    D   D
Sbjct: 3   LNFTKMHGLGNDYIVINEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSI---- 116
              RI N DGSE + CGNG+RC  +F+  R+ +K+    ET+ G+ V++ N + +I    
Sbjct: 63  IRFRIFNSDGSEAEMCGNGIRCFSKFVYERVMQKNPLNVETMGGLRVSEMNIENNIVKSI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVED 173
            V MG P  + K IP+       +             L N     VV++GNPHA+ F++D
Sbjct: 123 KVFMGAPTFELKDIPMVVEGKSENDVFLDEEIELKNALLNSVKLSVVNVGNPHAVIFMKD 182

Query: 174 DLYHY-----DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           +          L   G  +  H +F E +N+    + + + + + TWERG G T ACG+ 
Sbjct: 183 NNLKAPFIRTHLNILGKEIEHHSVFPEKINVHFVEIVNPQEIKIITWERGAGYTTACGTG 242

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +SV+ +  L KT   V   + GG L IE  ++  V+M G+A   ++G+L
Sbjct: 243 TTSSVIIANKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMEGDAVIVYDGEL 292


>gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
          Length = 283

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 136/287 (47%), Gaps = 18/287 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM G GN  + +D       N    +    +       D ++LI        D
Sbjct: 2   TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKEWSALHTGIGSDGLVLIGRS--GKAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGS 115
             +RI N DGSE + CGN  RC+    +      +   T +T+ GI       ++N+  +
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVEDNKVDT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDD 174
           ++VDMG P  +         +D  +       P+    +R     VSMGNPH + FV +D
Sbjct: 120 VTVDMGIPACEP------TCYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV-ND 172

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL   G  L  HP F   +N+  A+V     + +R WERG G+T ACG+ ACA+ V
Sbjct: 173 ITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACATAV 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           A+    ++ R  +V M GG L IEW     HVFMTG A + ++G+ +
Sbjct: 233 AAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279


>gi|319404903|emb|CBI78504.1| Diaminopimelate epimerase [Bartonella rochalimae ATCC BAA-1498]
          Length = 283

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 129/290 (44%), Positives = 173/290 (59%), Gaps = 8/290 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++    F+KM G+GNKI+V DMR    NIT  AI AL+ +  T+FDQ+M IH      +
Sbjct: 1   MET---PFSKMNGLGNKIIVADMRESTHNITQQAILALAKNPQTYFDQLMTIHPSIKNEI 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +  I I N DGS+ Q+CGNG RCV+ +LT     +SF  ET  GI+  K   +G ISV+M
Sbjct: 58  NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  D K +P+AR     +      GP     L++  +VS+GN HA FF E+++ H  L
Sbjct: 118 GRPNFDAKNMPIAREVADTNHVEIRAGP-----LKDASLVSIGNLHAYFFCENNIEHIPL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  L   P+F E  N+SIA VTS  SL LRTWERG GLT ACGSAACAS V +    
Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            T R + V +LGG L I + +++HV MTG  + E+ G L+  TG + K +
Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHVIMTGPVEYEFSGLLNPLTGDYKKDS 282


>gi|227872769|ref|ZP_03991090.1| diaminopimelate epimerase [Oribacterium sinus F0268]
 gi|227841395|gb|EEJ51704.1| diaminopimelate epimerase [Oribacterium sinus F0268]
          Length = 275

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 12/280 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++          +    ++        D ++LI     A  DA++
Sbjct: 1   MKFTKMEGLGNDYVYVNAFTEKVENPGELARRIADRHFGVGGDGLILIEPSDKA--DAYM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDM 120
            + N DGSE   CGNG+RCV +++         R+    ET  GI   +          M
Sbjct: 59  HMFNADGSEGSMCGNGIRCVAKYIYDHGIVDKERRQLRIETKSGIKDIEIFVKD---GKM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +  +D   + L     +    R        + + NP  V     +        +   DL
Sbjct: 116 EKATVDMGEVKLDGELPENIEVRGMSLQFVGIDVGNPHAVYFLEDNP-ELSVSSVSELDL 174

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G    +HP F + VN    +V S   +  R +ERG G T ACG+ A A+VVA   + 
Sbjct: 175 EKIGKDFEEHPRFPDKVNAEFIQVLSPSEIRFRVYERGSGETLACGTGATAAVVAGILMG 234

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           +     +V +LGG L I +     H FMTG A++ + G+ 
Sbjct: 235 RLEDKATVHLLGGDLEISYDKKTGHAFMTGPAREVFNGEW 274


>gi|296108918|ref|YP_003615867.1| diaminopimelate epimerase [Methanocaldococcus infernus ME]
 gi|295433732|gb|ADG12903.1| diaminopimelate epimerase [Methanocaldococcus infernus ME]
          Length = 282

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 12/278 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M  +GN  +VI+          +           +   D ++ I      + D   RI N
Sbjct: 1   MHALGNDYIVINEFDGEKVKNKEEFSKKVCRRRFSIGADGVIFIQKPSSNNYDVKFRIFN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS----ISVDMGEP 123
            DGSE + CGNG+RC  +++  R+ K+     ET  G+ V +   +      I V MG+P
Sbjct: 61  SDGSEAEMCGNGIRCFSKYVYERILKKNPLKVETKAGLRVCELEVEDDRVKKIRVYMGKP 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--YDLA 181
               K IP+    ++   +R  +    +L   N   VS+GNPHAI FV+ DL      L 
Sbjct: 121 SFKCKDIPVKSEKEEFINERAELKNP-YLKEVNITAVSVGNPHAIIFVD-DLEKIREHLD 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ +   P+F E +N+   +V + + + + TWERGVG T ACG+ A AS V S  L  
Sbjct: 179 VIGSEIENLPIFPERINVHFVKVLNDKEIKILTWERGVGYTMACGTGATASAVVSNRLGF 238

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T   V V + GG L IE  D+   +M G+A   ++G +
Sbjct: 239 TKDKVLVHLDGGDLEIEIKDDG-AYMKGDAVMVYDGVM 275


>gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
 gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
          Length = 290

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 20/292 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTD-DNTHFDQIMLIHDFQ 56
           M +  + F KM  +GN  ++ID             + +  +         D ++ +   +
Sbjct: 1   MNTKTILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKICDRNFGVGGDGVIFV--SK 58

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVA----KE 110
             ++D   RI N DGSE + CGNG+RC  +++  +    +K    ET+ G  +     K 
Sbjct: 59  SDNLDIKFRIFNADGSEAEMCGNGIRCFAKYVYEKGILRKKRMKVETLAGEKILNLKTKN 118

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           N   SI VDMG      + IP+             +             V++GNPH + F
Sbjct: 119 NLVESIKVDMGLATFKSEKIPVKTKDKTFINKVCKLNDKKIKL----SAVNVGNPHTVIF 174

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V+ ++        G ++  HP+F E  N++  +V +   + + TWERGVG+T ACG+ A 
Sbjct: 175 VD-EVSRDYAEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTGAV 233

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           AS +    L K N+ V+V + GG L IE ++ N+    FM G+A   +EG L
Sbjct: 234 ASTIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEGIL 285


>gi|325918376|ref|ZP_08180507.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937]
 gi|325535399|gb|EGD07264.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937]
          Length = 283

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 120/283 (42%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +  A            DQI+ I   +    
Sbjct: 6   RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAVLAARLADRHFGVGCDQILTIEAPRSEDA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L        + F  ++       +     + SV
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAHGERFIIDSPVTAHAVERVDAETYSV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPAQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVLEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F   VN+  A+V     + LR +ERGVG T ACGS ACA+      
Sbjct: 181 PVERVGALLQQNAAFPNSVNVGFAQVVDSTHVRLRVFERGVGETLACGSGACAAAAVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDAQEVVMSGPAVFVFDGEWN 283


>gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
          Length = 282

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 138/286 (48%), Gaps = 18/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS------DAINALSTDDNTHFDQIMLIHDFQDAS 59
           +DF KM G+GN  + +D                +    L            L+       
Sbjct: 1   MDFIKMHGLGNDFVCLDRFLDPAENNPAETDYSELAQRLCHRQLGIG-GDGLLLILPSEK 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS-- 115
            DA +RI N DGSE + CGNG+RC  R++  +   ++   T ET+ GI   +        
Sbjct: 60  ADARMRIFNADGSEPEMCGNGIRCFARYIYEQGYVQKDQLTVETLAGIKPIRLQMKDGRV 119

Query: 116 --ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ++VDMG+P L  K IP+    D++   R  +             VS+GNPH + F++ 
Sbjct: 120 YGVTVDMGKPRLSAKEIPVNDHSDRVVNKRLEVLGKEIGI----TAVSVGNPHCVLFLD- 174

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D    D+ + G  L KHP F    N+   RV S E + ++ WERGVG T ACG+ ACASV
Sbjct: 175 DFAETDVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACGTGACASV 234

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           VA+    +T R ++V + GG L IE+ +   + MTG A+  + G+L
Sbjct: 235 VAAVLNGRTGRRLTVHLPGGDLQIEYAEEGRILMTGPAQYVFRGQL 280


>gi|319406388|emb|CBI80029.1| Diaminopimelate epimerase [Bartonella sp. AR 15-3]
          Length = 284

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 132/290 (45%), Positives = 174/290 (60%), Gaps = 8/290 (2%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M++    F+KM G+GNKI+V DMR    NIT  AI  L+ +  THFDQIM IH    + +
Sbjct: 1   MET---PFSKMNGLGNKIIVADMRESTHNITLQAILTLAKNPQTHFDQIMTIHPSTKSEI 57

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  I I N DGS+ ++CGNG RCVV +LT+    +SF  ET  GI+  K   +G ISV+M
Sbjct: 58  DFRIEIWNADGSKAKACGNGTRCVVEWLTNHNLGESFQLETPVGIVKGKRQTNGLISVNM 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P  D K +P+A      +      GP     L++  ++S+GN HAIFFVE+++ H  L
Sbjct: 118 GCPNFDAKNMPIAHEIADTNHVEITAGP-----LKDASLISIGNLHAIFFVENNIQHIPL 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
             +G  L   P+F E  N+SIA VTS  SL LRTWERGVGLT ACGSAACAS VA+    
Sbjct: 173 EKYGPKLEHDPLFPERCNISIAFVTSRNSLILRTWERGVGLTKACGSAACASAVAAYRRG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            T R + +   GG L I + +NNH+ MTG  + E+ G L+  TG + K  
Sbjct: 233 LTERRIDINSPGGNLSIFYQENNHIIMTGPVEHEFSGLLNPLTGDYKKDA 282


>gi|303244555|ref|ZP_07330889.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1]
 gi|302485103|gb|EFL48033.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1]
          Length = 302

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM G+GN  +VI   D     +    +    +     +   D ++ +    +   D
Sbjct: 8   LEFTKMHGLGNDYIVINEFDGIKIKEEDKEEFSRKICKRGFSIGADGVIYVQKPTNDKYD 67

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI---- 116
              RI N DGSE + CGNG+RC  +++  R+ K+     ET  G+ V++ + +  I    
Sbjct: 68  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLNVETKGGLRVSEMDIENDIVKKI 127

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRD---RFHIGPVNHLFLRNPFVVSMGNPHAIFFVE- 172
            V MG P    K IP+       + +          + +      VV++GNPHA+ FVE 
Sbjct: 128 KVYMGAPTFQLKDIPMKVEGKSENDEFLNEAIKLNNDLIDEIKLSVVNVGNPHAVIFVED 187

Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D    +L + G  +  H +F E +N+    V +   + + TWERG G T ACG+ 
Sbjct: 188 NNITMDFARDNLNTLGKEIENHEVFPERINVHFIEVINPNEIKILTWERGAGYTTACGTG 247

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +SV+ +  L KT   V   + GG L IE  ++  V+M G+A   ++GKL
Sbjct: 248 TTSSVIIAHKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMKGDAVIVYDGKL 297


>gi|68171560|ref|ZP_00544937.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999026|gb|EAM85700.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 267

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 12/274 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+DF KM G  N  ++ID R     NI   AI   +       DQI++I + + A  D F
Sbjct: 1   MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS+V+ CGN  RCV   L++  +  + T E    IL      +  + V++G  
Sbjct: 57  MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IP ++  D +        P+    L +P  +++GNPHAIFFV+  +    L   
Sbjct: 117 KFHWTDIPTSQECDTL------HLPIELEMLSDPVGINVGNPHAIFFVD-SIETIPLDKL 169

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  H +F +  N+SIA + S + + LR WERG G TA+CGS ACA++VA+     TN
Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +   V + GG LLI +  +N + M G     + G
Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYTFNG 263


>gi|285019337|ref|YP_003377048.1| diaminopimelate epimerase [Xanthomonas albilineans GPE PC73]
 gi|283474555|emb|CBA17056.1| probable diaminopimelate epimerase protein [Xanthomonas
           albilineans]
          Length = 286

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 130/282 (46%), Gaps = 9/282 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
           + + + F KM+G GN  +V+D+R       +  A+           DQI+ I   ++A+ 
Sbjct: 8   RGARLRFTKMQGAGNDFVVLDLRDGSSPPDAALAVRLADRHFGIGCDQILTIEPARNAAA 67

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISV 118
            A  RI N DGS    CGNG RCV  +L          F  E+  G    +   D   +V
Sbjct: 68  LASYRIWNTDGSAAGQCGNGARCVAAWLVRDGSASGDRFVIESPAGAHRIERCDDDQFAV 127

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P    + +PL    D +D     +   +  F      VSMGNPHA+  V   +   
Sbjct: 128 AMGVPRFAPEDVPLIGFPDALDEYLLPMHGESVRFG----AVSMGNPHAVLEVGL-VDAA 182

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL +H  F + VN+   +V   + L LR +ERGVG T ACGS ACA+      
Sbjct: 183 PVERLGPLLQQHASFPDSVNVGFVQVIDRDRLRLRVYERGVGETLACGSGACAAAAVLMQ 242

Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
             + +R V V + GG L ++W H    + M+G A   ++G+ 
Sbjct: 243 RGRVDRDVRVVLPGGELRVQWPHAAAPLVMSGPAAFVFDGEW 284


>gi|49474820|ref|YP_032862.1| diaminopimelate epimerase [Bartonella quintana str. Toulouse]
 gi|81646717|sp|Q6FYC7|DAPF_BARQU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49240324|emb|CAF26806.1| Diaminopimelate epimerase [Bartonella quintana str. Toulouse]
          Length = 283

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 130/284 (45%), Positives = 170/284 (59%), Gaps = 5/284 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F KM+G+GN+I+V DMR     +T  AI AL+ D  THFDQIM IH       D  I I
Sbjct: 4   PFRKMDGLGNQIIVADMRESTHALTPQAILALAADPQTHFDQIMTIHSSTQKEADFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCV+ +LT     +SF  ET  GI+  K   D  ISVDMG P  +
Sbjct: 64  WNADGSMAKACGNGTRCVIAWLTDHNLGESFRLETPAGIIEGKRQTDNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +  +   GP     L++  +VS+GN HAIFFVED++    L  +G  
Sbjct: 124 AKEMPVSREIADTNYVKITAGP-----LKDACLVSIGNLHAIFFVEDNIQQIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA VTS +SL+LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 179 LEHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            V + GG L I + ++NH+ MTG  K E+ G L+  TG + K +
Sbjct: 239 DVNLPGGTLNIVYREDNHIVMTGPTKYEFGGFLNPLTGTYKKDH 282


>gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579]
 gi|81580413|sp|Q816D1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579]
          Length = 288

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +    
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGESETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|167045713|gb|ABZ10360.1| putative diaminopimelate epimerase [uncultured marine bacterium
           HF4000_APKG2098]
          Length = 275

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 93/273 (34%), Positives = 155/273 (56%), Gaps = 4/273 (1%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM+G+GN  ++ D R    ++T + I  +S  ++   DQ++ I   +D + +AF++  N
Sbjct: 7   YKMDGLGNDFIIFDKRKKSVSLTKEQIIKISDRNSIGCDQVIFIE--KDENSNAFLKFYN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DG E+ +CGNG RCV   L      K  +  T  GIL A+ N    +S++MGEP  +W 
Sbjct: 65  SDGGEISACGNGSRCVAYLLMKENNNKKISLGTKVGILQAELNDKNLVSINMGEPNFEWN 124

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL++  D  +  +  I  ++    R  F +S+GNPH IFFVE D   ++L   G  + 
Sbjct: 125 KIPLSKKMDTQNL-KIKINGIDGKEARGGFSLSIGNPHVIFFVE-DFNQFNLKEIGPKIE 182

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            +  F E  N+++A + +   + ++ WERGVGLT ACG+AACA+ V+   L  + R V +
Sbjct: 183 NYSYFPEKCNVTLASIKNKNHVKVKVWERGVGLTKACGTAACATAVSGAVLKLSERCVDI 242

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           + + G L I+W  +N+++MTG+  +  +  ++I
Sbjct: 243 EFVEGLLNIDWKKDNNIYMTGKVSEVKKITVNI 275


>gi|49476309|ref|YP_034350.1| diaminopimelate epimerase [Bartonella henselae str. Houston-1]
 gi|81647473|sp|Q6G1L7|DAPF_BARHE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49239117|emb|CAF28421.1| Diaminopimelate epimerase [Bartonella henselae str. Houston-1]
          Length = 283

 Score =  195 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 5/284 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM+G+GN+I+V DMR     +T  AI +L+ D  T+FDQIM IH       D  I I
Sbjct: 4   PFSKMDGLGNQIIVADMRESTHALTPQAILSLAADSQTYFDQIMAIHLPTKKEADFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS   +CGNG RCV+ +LT     + F  ET  GI+  K   D  ISVDMG P  +
Sbjct: 64  WNADGSMANACGNGTRCVIAWLTDHNYGEIFRLETPAGIVEGKRQIDNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     LR+  +VS+GN HAIFFVE+D+ +  L  +G+ 
Sbjct: 124 AKEMPVSREIIDTNHVELTAGP-----LRDACLVSIGNLHAIFFVENDIQYIPLEKYGSK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F +  N+SIA VTS ESL+LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 179 LEHDPLFPQRCNISIACVTSQESLNLRTWERGAGLTQACGSAACASAVAAYRRGLTKRNI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            V + GG L I + +++H+ MTG  K  + G L+  TG + K +
Sbjct: 239 DVNLPGGTLNIFYREDDHIIMTGPVKYGFSGFLNPLTGSYKKDD 282


>gi|261250030|ref|ZP_05942607.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891]
 gi|260939534|gb|EEX95519.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891]
          Length = 261

 Score =  195 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 86/265 (32%), Positives = 126/265 (47%), Gaps = 10/265 (3%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +V+D    +   + D I  L+       FDQ++++    D   D   RI N DGSEV+ C
Sbjct: 1   MVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60

Query: 78  GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           GNG RC  RF+  +    + S +  T +G +V     D  ++V+MG P  +   IP    
Sbjct: 61  GNGARCFARFVRMKGLTNKYSVSVSTKKGKMVLSIEEDDQVTVNMGVPEFEPSKIPFKAK 120

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                 ++ +I       L     VSMGNPH    V DD+   D+ + G LL  H  F E
Sbjct: 121 ----QTEKTYILRTEDKTLFCG-AVSMGNPHV-VTVVDDVATADVDTLGPLLESHERFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
            VN    +V +   ++LR +ERG G T ACGS AC +V         +  V V + GG L
Sbjct: 175 RVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLDENVKVNLPGGSL 234

Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKL 279
            I+W      ++MTG A   ++G+L
Sbjct: 235 NIQWQGVGKPLYMTGPATHVFDGQL 259


>gi|57234492|ref|YP_181475.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195]
 gi|57224940|gb|AAW39997.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195]
          Length = 284

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 8/280 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  ++ID +G   + +  A++          D +MLI     A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLIDPQGEDKDWSKLALHMCHRHFGAGADGLMLILPS--AKADFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++ +      R   + ET+ GI  A+   DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D    +   I               +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLSLVSMGNPHAIHFCTKSVEEFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G L+  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + V +K+ GG L +EW  +N V++TG+A+  + G+ 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHNDVYLTGKAEIIYTGEW 278


>gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264]
 gi|226724204|sp|B7HBI0|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264]
          Length = 288

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +    
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|257438842|ref|ZP_05614597.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165]
 gi|257198657|gb|EEU96941.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165]
          Length = 279

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 9/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G  N  + +D R      +I + A    +   +   D I+ I        D  
Sbjct: 3   LSFTKMQGCANDYIYLDCRASGVPADIAALAQRLSARHFSVGADGIICICAPVTPGADGR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +RI N DGSE Q CGNG+RCV  +L +    K     +T  G+            V+MG 
Sbjct: 63  MRIFNADGSEAQMCGNGVRCVAEWLYTHGVEKPVLAIDTNSGVKRITRQGAQLWQVEMGT 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +P   +    +             +     +S+GNPH +  VE D+    L +
Sbjct: 123 YSTLPADLP---AIHMGEDPLVDQPLTVEGKVWKVTCISVGNPHCVTVVE-DVDSLKLEA 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A   L   
Sbjct: 179 IGPAFEHHANFPERINTEFVQVVDAAHLKMRVWERGSGETWACGTGTCATVAALTELGIC 238

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              + + V++ GG L+I       + MTG A   +EG  ++
Sbjct: 239 PAGQDIHVQLRGGELVIRVLPGRQLLMTGSAVTVYEGVAEV 279


>gi|70729907|ref|YP_259646.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
 gi|68344206|gb|AAY91812.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5]
          Length = 264

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 14/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM   G+  ++ID RG  + IT +   AL        F+Q++++ D  D++  A +
Sbjct: 3   LNFVKMHANGDDFVLIDARGRTNPITRELARALGDRRRGIGFNQLVVLGDCSDSA--AQL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS + +CG+  R     L       S   +T RG+       D S+SV+MG P 
Sbjct: 61  TFFNADGSSLDTCGSATRGAADLLMQESGVTSVQVKTARGLQQCLRLEDRSVSVEMGLPS 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            DW+ IPLAR  D +                 P   SMGNPH  FFV+ DL   D+A+ G
Sbjct: 121 FDWQSIPLARELDSLHL----------PLPGTPAACSMGNPHCSFFVD-DLAPLDIATLG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +   P+F    N+   +V   +++ LR WER   +    GS +CA+ V        + 
Sbjct: 170 PQIESDPLFPHKTNVHFIQVIDRQTIRLRIWERNGAIPLGSGSCSCAAAVNGIRRGLLDS 229

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V   GG + + W     V + G   + + G L
Sbjct: 230 PVQVLCDGGPVTVSWDGQGKVRLAGSVTRVFSGSL 264


>gi|254462864|ref|ZP_05076280.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2083]
 gi|206679453|gb|EDZ43940.1| diaminopimelate epimerase [Rhodobacteraceae bacterium HTCC2083]
          Length = 273

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 139/277 (50%), Gaps = 15/277 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +V D R     +T   + A++       +DQ++ I +   A  D 
Sbjct: 7   NKLPFMKMHGLGNDFVVFDERESGSVVTQALVIAMADRHMGVGYDQLVAIRNHDTA--DI 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DGS   +CGN  RC+  +  +R  ++  +  T RG+L A +   G I V+MG+
Sbjct: 65  ELVFWNADGSIAGACGNATRCIAGWDLARTGKEVLSIRTERGLLEAVDAGHGDIEVNMGQ 124

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  +PLAR  D ++                P   SMGNPH  FFV +D+   +L +
Sbjct: 125 PMTDWHEVPLAREMDTLEL----------PIEGKPTATSMGNPHCTFFV-NDVDAINLEA 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG  +  HP+F E  N+ IA++     + +R WERGVG+T A GS++CA  VA+      
Sbjct: 174 FGPTIEHHPLFPERTNVQIAQIIGPNQIRMRVWERGVGITLASGSSSCAVAVAATRRGLI 233

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + ++ + GG + I+      V MTG     ++G  
Sbjct: 234 GGSATLTLDGGEIRIKILPTG-VHMTGTWAHVFDGHW 269


>gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134]
 gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus]
 gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134]
          Length = 288

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +    
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
 gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
          Length = 288

 Score =  194 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 144/285 (50%), Gaps = 19/285 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M        ++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAI 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              K    + ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 239 LNGKLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|296186652|ref|ZP_06855054.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296048689|gb|EFG88121.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 273

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  +VID R           A            D I+L+ +   A +   
Sbjct: 1   MKFTKMQGTGNDFIVIDDRKNSFLGKEGELAKKLCDRKFAIGADGILLVRNSDVAQI--K 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL------VAKENRDGSIS 117
           + I+N DGS    CGNG+RC  +++      K  +     G          + +    ++
Sbjct: 59  MIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MG P  + + IP      + + +  +          N   + MG PH I F +  L  
Sbjct: 119 INMGTPSFEVEKIPA-----RFNEEVINKRIKVEKKEYNITSMLMGVPHTIIFGK--LED 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           Y++   G  + K   F +G N++   V S   + ++TWERG G T ACG+ +CASV+A+ 
Sbjct: 172 YNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T+ +V V++ GG L IE   N  +FMTG A   ++G+ ++
Sbjct: 231 KLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 273


>gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
 gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
          Length = 286

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ G+GN  + ++         ++   A      +     D ++LI   + A  D 
Sbjct: 1   MKFTKLHGLGNDYVYVNCFEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSERA--DF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGS 115
            +R+ N DGSE ++CGNG+RCV +++      +  TF                 + R   
Sbjct: 59  RMRVFNNDGSEAKNCGNGLRCVSKYVYDHGLTEQTTFTVETLGGTVTPVVSLGADGRVDQ 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +++DMGEP  +   IP+    ++  R+    G            VSMGNPHAI FV+ ++
Sbjct: 119 VTIDMGEPRFERAAIPMTGIPEEQVREE---GIEVGGTAFTMTAVSMGNPHAILFVD-EV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  +G ++  H  F E  N+   ++ + E +  R WERG G+T ACG+ ACA+ VA
Sbjct: 175 KEEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACAAAVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           +    KT R V+V + GG L IEW + +N V+MTG A + + G+
Sbjct: 235 AHLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGE 278


>gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
 gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
          Length = 271

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/271 (32%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 22  DMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           D R     +     A++    +     D ++ +   ++   D  +RI N DGSE + CGN
Sbjct: 2   DNRASETPMVTPEQAVDVCDRNFGIGADGVIFVLPGKE-GADYSMRIYNSDGSEPEMCGN 60

Query: 80  GMRCVVRF-------LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
           G+RC+ +F              KS+   T+ GI+  +   DG ++VDMGEPIL  + IP 
Sbjct: 61  GIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPDGQVTVDMGEPILTAREIPT 120

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
                + D                   VSMGNPH I FV+ D+    LA  G     H  
Sbjct: 121 TLG--QPDGKVIDETLTVAGENWQVTCVSMGNPHCITFVD-DVEAVPLADIGPRFEHHEA 177

Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG 252
           F   +N     V   + L ++ WERG G T ACG+  CA VVA+    K +R  +V++ G
Sbjct: 178 FPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCALVVAAVLNGKCDRQTTVELPG 237

Query: 253 GGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           G L IEW +NN V+MTG A   + G + +  
Sbjct: 238 GNLEIEWANNNRVYMTGPATLVFSGDVAVDA 268


>gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189082825|sp|A7GUE1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98]
          Length = 288

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 17/284 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M   H      A+      + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +      + +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAGIVTAEVTVENDIVTLVKI 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P L    +P+    +           + H        VSMGNPHA+ FV+ D+   
Sbjct: 124 DMGAPRLTRAELPMLGEGETPF---IREDFLFHNQRYAFTAVSMGNPHAVIFVD-DVEKA 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACASVVA+  
Sbjct: 180 PLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASVVAAIL 239

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +   V M G A+    G  +
Sbjct: 240 NGKMERGKEITVHLAGGDLMITWTEEGTVMMKGPAEVICHGVYE 283


>gi|229112384|ref|ZP_04241922.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15]
 gi|228671032|gb|EEL26338.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15]
          Length = 288

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 19/285 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M          A+      + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+  V+ D+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|229099396|ref|ZP_04230326.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29]
 gi|228684020|gb|EEL37968.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29]
          Length = 288

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 19/285 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M        ++   A    + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSI----SV 118
           R+ N DGSE ++CGNG+RCV ++       +   F  ET+ GI+ A+   +  +     +
Sbjct: 64  RMFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKI 123

Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+  
Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E  N+    + + + ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAI 238

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 239 LNGKLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|225378461|ref|ZP_03755682.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM
           16841]
 gi|225209684|gb|EEG92038.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM
           16841]
          Length = 283

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 125/284 (44%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + ID          +    +S        D ++LI        D  +
Sbjct: 1   MKFTKMQAFGNDYVYIDAIHQELKNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           R+ N DG+E + CGN +R V +++       +     ET+ G+             +I  
Sbjct: 59  RMFNPDGTEGEMCGNALRSVGKYVYDHRLTDKTELVIETLGGMQHLTLTVTDGYVSNIRA 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           D+GEP L  K+IP+    D        +             VS GNPH   FV+  +   
Sbjct: 119 DIGEPRLSTKVIPINTEMDTFVDQPVQVLDRTFHI----TAVSWGNPHCAMFVD-SVAEL 173

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+  +G  +     +F    N++     S + L +R WERG G T  CG+    +VV + 
Sbjct: 174 DVEKYGKEIEYMTSIFPNKTNVTFTEFVSRDYLKIREWERGTGETIGCGTGCATAVVTAI 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
              K +R V+V+ +GG LLIEW +  NH+FMTG +   +E ++D
Sbjct: 234 LTGKCDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277


>gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
 gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
 gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621]
 gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621]
 gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
 gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
          Length = 288

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 144/285 (50%), Gaps = 19/285 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M          AI      + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+   +        +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L  + IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+  
Sbjct: 124 DMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAI 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              K    + ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 239 LNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYE 283


>gi|300854262|ref|YP_003779246.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528]
 gi|300434377|gb|ADK14144.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528]
          Length = 273

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 135/284 (47%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  +VID R            +   +       D I+++   + A +   
Sbjct: 1   MKFIKMQGTGNDFVVIDDRDNRFLGKEKELGLKLCNRHFGIGGDGILIVRQSEIAQI--K 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117
           + IIN DGS    CGNG+RC  +++      K      ET  GI  A  N +      ++
Sbjct: 59  MIIINSDGSYASMCGNGIRCFAKYVWEENLVKESPIKIETGDGIKEAFLNIENGKVKEVT 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG P  D K IP+    + + ++        +    +   + MG PH + F   DL  
Sbjct: 119 IDMGTPSFDPKKIPVNSCDEVVKKELKI-----NEKTYSITSMFMGVPHTVIFG--DLEK 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G  + K+ +F EG N++   V + + + ++TWERG G T ACG+  CA  VAS 
Sbjct: 172 YDVKE-GKAIEKYSIFPEGTNVNFCEVLNKDEIKIKTWERGAGPTLACGTGTCACAVASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T   V   + GG L IE   +N VFMTG A+  ++G+ DI
Sbjct: 231 KLGFTEGKVKAHVPGGILFIEVK-DNKVFMTGPAEVSFKGEYDI 273


>gi|217978010|ref|YP_002362157.1| Diaminopimelate epimerase [Methylocella silvestris BL2]
 gi|254767115|sp|B8EM14|DAPF_METSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|217503386|gb|ACK50795.1| Diaminopimelate epimerase [Methylocella silvestris BL2]
          Length = 290

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/273 (42%), Positives = 158/273 (57%), Gaps = 2/273 (0%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            KM GIGN+IL++D+RG    +T     A++      FDQ+M++ D +     AF+ I N
Sbjct: 10  VKMNGIGNEILIVDLRGAGAGVTGPQARAIARTKGLAFDQLMVLEDPRSKGCAAFVTIFN 69

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS+  +CGNG RCV   L     R     ET  G L  +   +   SV+MG P L   
Sbjct: 70  ADGSQSAACGNGTRCVAWTLLKDGARDEVLLETAAGRLACRRVSELVFSVEMGRPRLKAA 129

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL+R            GP +   L+NP VV+MGNPHAIFFVE D+  YDLA+ G +L 
Sbjct: 130 EIPLSRDAPDTSAVDLSFGPADSPILKNPAVVNMGNPHAIFFVE-DIGAYDLAAIGPVLE 188

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
             P+F E  N+S+AR+ S E ++L+ WERGVGLT ACGSAACA++VA+     T R  +V
Sbjct: 189 HDPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATV 248

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + GG L I W + ++ V MTG    E+E +LD
Sbjct: 249 ALPGGELDIFWRESDDMVVMTGPVAFEFETRLD 281


>gi|240851392|ref|YP_002972795.1| diaminopimelate epimerase [Bartonella grahamii as4aup]
 gi|240268515|gb|ACS52103.1| diaminopimelate epimerase [Bartonella grahamii as4aup]
          Length = 283

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 127/285 (44%), Positives = 167/285 (58%), Gaps = 5/285 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM+G+GN+I+VIDMR     +T  AI ALS D   HFDQIM IH       D  I I
Sbjct: 4   PFSKMDGLGNQIIVIDMRESTHALTPQAILALSADPEIHFDQIMAIHTPTQKKADFRIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCVV +L      + F  ET  GI+      D  ISVDMG P  +
Sbjct: 64  WNADGSMAKACGNGTRCVVAWLKDHNFGEKFRLETPAGIIEGTYQTDNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  ++S+GN HAIFFVE+D+ H  L  +G  
Sbjct: 124 AKEMPVSREIVDTNHVEITAGP-----LKDACLISIGNLHAIFFVENDIQHIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA +TS +SL+LRTWERGVGLT ACGSAACAS VA+     T R +
Sbjct: 179 LEHDPLFPEQCNISIACITSKKSLNLRTWERGVGLTQACGSAACASAVAAYRRGLTQRHI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            V +  G L I + +++HV MTG  K ++ G L   TG + K + 
Sbjct: 239 DVNLPKGTLNIFYREDDHVIMTGPIKYQFSGFLSPLTGCYKKDHS 283


>gi|73748553|ref|YP_307792.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1]
 gi|289432581|ref|YP_003462454.1| diaminopimelate epimerase [Dehalococcoides sp. GT]
 gi|73660269|emb|CAI82876.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1]
 gi|288946301|gb|ADC73998.1| diaminopimelate epimerase [Dehalococcoides sp. GT]
          Length = 284

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 140/280 (50%), Gaps = 8/280 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +MLI   + A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++        R   + ET+ G+  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAVNKLLGNRDELSIETLAGMRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D    +   I               +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G+ +  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + V +K+ GG L +EW  ++ V++TG+A+  + G+ 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIYTGEW 278


>gi|163942650|ref|YP_001647534.1| diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4]
 gi|229807486|sp|A9VN01|DAPF_BACWK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|163864847|gb|ABY45906.1| Diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4]
          Length = 288

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 145/285 (50%), Gaps = 19/285 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M          AI      + +     D ++LI     A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118
           R+ N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+   +        +
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKI 123

Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG P L  + IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+ +
Sbjct: 124 DMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEN 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+ 
Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAI 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              K    + ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 239 LNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYE 283


>gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
 gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
          Length = 281

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 131/286 (45%), Gaps = 13/286 (4%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  + +D                ST       D ++LI     A  D
Sbjct: 2   TRSIKFTKMHGAGNDYIYVDTTQYPVENPERLSKTWSTPHTGIGSDGLVLIGKSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE   CGN  RC+    F     K+   T +T+ GI + K +      V+
Sbjct: 60  FSMRIFNADGSEAMMCGNASRCIGKYLFDYGLTKKTEITLDTLSGIKILKLHVAADGKVN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLY 176
                +    IP     +        +     L     +V   VSMGNPH + FV +D+ 
Sbjct: 120 TVTVDMG---IPADEPVNYDGNGAKPMKEQPILIEGKRYVGTTVSMGNPHIVIFV-NDIT 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DLA+ G  +  HP+F   +N+  A+V     + +R WERG G+T ACG+ ACA+ VA+
Sbjct: 176 DTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACATAVAA 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
               +  R   + M GG + I+W   + HV MTG A K +EG++++
Sbjct: 236 FLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEIEV 281


>gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 288

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FVE D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|319780720|ref|YP_004140196.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166608|gb|ADV10146.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 294

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 149/289 (51%), Positives = 195/289 (67%), Gaps = 1/289 (0%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            FAKM GIGN+I+V DMRG  D +T+ A  AL+ D  T FDQIM IHD + +    FI I
Sbjct: 6   PFAKMNGIGNEIIVADMRGRADRVTAAAAVALNADAATSFDQIMAIHDARTSGTAFFIDI 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           +N DG+  Q+CGNGMRCVV+ L +   +K FTFET+ GIL A+E+ DGSISVDMG P   
Sbjct: 66  LNSDGTGAQACGNGMRCVVQALAAETGQKIFTFETVAGILNAREHADGSISVDMGTPRFG 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L +P VVSMGNPHAIF+V++D++ Y+L  FG L
Sbjct: 126 WQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDNDVWSYELDRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HPMF E  N++IA+VTS E++ +RTWERG GLT ACGSA+CA+VVA+   ++T R+V
Sbjct: 186 LENHPMFPERANITIAQVTSPETMIIRTWERGAGLTKACGSASCAAVVAAARTNRTGRSV 245

Query: 247 SVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
           S+    GG L +EW D++HV +TG A+ E+ G  D   G W +  E   
Sbjct: 246 SLLTPGGGTLHVEWRDDDHVVLTGAAEWEFSGNFDPSIGTWARDTESAA 294


>gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
 gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
 gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
 gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
          Length = 288

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/287 (33%), Positives = 147/287 (51%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M     R     + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIREEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEDDKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L  + IP+    D    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTREEIPMLGEGDTPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 283


>gi|147669314|ref|YP_001214132.1| diaminopimelate epimerase [Dehalococcoides sp. BAV1]
 gi|146270262|gb|ABQ17254.1| Diaminopimelate epimerase [Dehalococcoides sp. BAV1]
          Length = 284

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 8/280 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +MLI   + A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++            + ET+ G+  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIAVNKLLGNLDELSIETLAGMRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D    +   I               +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G+ +  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + V +K+ GG L +EW  ++ V++TG+A+  + G+ 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIYTGEW 278


>gi|90416169|ref|ZP_01224101.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207]
 gi|90331894|gb|EAS47108.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207]
          Length = 274

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID    +  IT+  +  L+        DQ+++I       +D   
Sbjct: 1   MKFTKMHGLGNDFVVIDAVTQNVRITASMVRRLADRKTGIGCDQVLVIEPPSAVDIDFNY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI NCDG+EV+ CGNG RC+ RF+  R    +KS   +T   ++         ++VDMG 
Sbjct: 61  RIFNCDGAEVEQCGNGARCLARFVHDRQLTGKKSIQVQTSNRVMTLNLINKNLVAVDMGV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P LD   IP   +      D    G      ++    VSMGNPHA+  V  D+    +A 
Sbjct: 121 PELDPPAIPFQATEAASLYDIDVNG-----QVQRIAAVSMGNPHAVLTV-ADINTATVAE 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L  H  F   VN+   ++     + LR +ERGVG T ACGS ACA+ VA+      
Sbjct: 175 LGAALESHERFPNRVNVGFMQIVDRSEIKLRVFERGVGETDACGSGACAAAVAAIQQELV 234

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           +  V+V +  G L I+W  +   + M+G AK  + G++ I
Sbjct: 235 DSPVTVHLTRGPLKIDWKGSGSPLIMSGPAKTVFHGRIRI 274


>gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8]
 gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8]
          Length = 1351

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 138/289 (47%), Gaps = 14/289 (4%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
            + + + F KM G GN  +  +      +     A+N          D ++L+   + A  
Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGVGGDGVILVCRSKVA-- 1125

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD----G 114
            D  +R+ N DGSE + CGNG+RCV +F+       R   T ET+ GI+  K +R      
Sbjct: 1126 DGRMRMFNLDGSEGRMCGNGIRCVAKFMRDNGLVDRDRMTIETLSGIIKVKLSRHYGEVN 1185

Query: 115  SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              +VDMG  IL+ + IP     D+  R                  VSMGNPH I F+ ++
Sbjct: 1186 GATVDMGAAILEPERIPCTLPADENGR-VVDREVEIAGEKHRVTCVSMGNPHCIVFM-NN 1243

Query: 175  LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
            +   ++   G      P+F E VN    +V    +L +R WERG G T ACG+ ACA+VV
Sbjct: 1244 IDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACAAVV 1303

Query: 235  ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+        N  V+V + GG L I + ++  V+MTGEA   +EG + +
Sbjct: 1304 AAVLNGYCPMNEEVTVMLRGGNLTIRYTED-TVYMTGEAVTVFEGDIRV 1351


>gi|325925413|ref|ZP_08186812.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325928772|ref|ZP_08189941.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325540853|gb|EGD12426.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
 gi|325544173|gb|EGD15557.1| diaminopimelate epimerase [Xanthomonas perforans 91-118]
          Length = 284

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 120/283 (42%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSQGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      +   F     +     +       +V
Sbjct: 66  VAAYGIWNSDGSPARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPAQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283


>gi|115522349|ref|YP_779260.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53]
 gi|122297964|sp|Q07UV4|DAPF_RHOP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|115516296|gb|ABJ04280.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53]
          Length = 288

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/275 (42%), Positives = 160/275 (58%), Gaps = 5/275 (1%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           FAKM GIGN+I+V+D+R   D +   A  A +      +DQ+M++   + A   AFIRI 
Sbjct: 9   FAKMNGIGNEIVVLDLRD--DPVAVTAAAARAIASQVPYDQLMVLQPPRAAGTAAFIRIY 66

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-PILD 126
           N DGSE  +CGNGMRCV + + S     +  FE+  G+L         I       P   
Sbjct: 67  NNDGSESNACGNGMRCVAKQVFSGTDASALAFESRAGLLQCWRGAAPDIYTVDMGVPKFG 126

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           W+ IPLA  F         IGP++   L  P  VSMGNPHAIF+V+ D++ +DL  FG L
Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPLLHTPSAVSMGNPHAIFWVD-DVHAHDLGRFGPL 185

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP+F E  N+++A +     + +RTWERGVGLT ACGSAACA+ VA+  L +  R V
Sbjct: 186 LENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQV 245

Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            + + GG L I+W + ++HV MTG A  E+EG LD
Sbjct: 246 QISLPGGDLTIDWREADDHVLMTGGASFEFEGTLD 280


>gi|296446185|ref|ZP_06888133.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b]
 gi|296256379|gb|EFH03458.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b]
          Length = 288

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 109/272 (40%), Positives = 153/272 (56%), Gaps = 3/272 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN+ILV+D+RG    +T+    A++      FDQ+M +H+ + A  +AF+RI N D
Sbjct: 13  MNGAGNEILVLDLRGASHEVTAAEARAIARASGLRFDQLMTLHEPRAAGANAFMRIYNND 72

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS   +CGNG RCV   L  + +  +   ET  G + +    +   SVDMG P LDW+ I
Sbjct: 73  GSRSGACGNGTRCVAFVLGEKGEGDALLLETDAGPIRSWRRGETLFSVDMGAPRLDWRAI 132

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PLA      D  R  + P           V+MGNPHA+FFVE D     L + G  +  H
Sbjct: 133 PLAGEG--ADTARVALAPAVIGAPEFFSAVNMGNPHAVFFVE-DPAAIALEALGPPIETH 189

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F E VN+S A V +   + LR WERG G+T ACGSAACA++VA+     + R   V++
Sbjct: 190 PLFPERVNVSFASVLAPGEIALRVWERGTGVTKACGSAACATLVAASRAGLSGREARVRL 249

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            GG L I+W  ++HV MTG  + E+  +LD +
Sbjct: 250 PGGDLDIDWGADDHVMMTGPVELEFVTRLDPR 281


>gi|270157867|ref|ZP_06186524.1| diaminopimelate epimerase [Legionella longbeachae D-4968]
 gi|289163870|ref|YP_003454008.1| Diaminopimelate epimerase [Legionella longbeachae NSW150]
 gi|269989892|gb|EEZ96146.1| diaminopimelate epimerase [Legionella longbeachae D-4968]
 gi|288857043|emb|CBJ10858.1| Diaminopimelate epimerase [Legionella longbeachae NSW150]
          Length = 276

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G+GN  +VID    + N++   I  ++  +    FDQ +L+   Q   +D   
Sbjct: 3   LRFTKMHGLGNDFIVIDGINQNINLSPQQIAIMAQRNTGIGFDQCLLVESSQQEGIDFNY 62

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DG EV  CGNG RC+           +   T  T    +    N D S+ VDMG 
Sbjct: 63  RIFNADGQEVGQCGNGARCLALFVKYYGLTNKSHLTVATKTTKMNLHINEDQSVRVDMGI 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P L  + IPL  + ++ D+    +     ++L     +S+GNPHA+  V  +L+   + S
Sbjct: 123 PKLAPRDIPL-LTQEQSDQYVLELSNNESIYLH---ALSVGNPHAVLLV-PELHRAPVLS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++ HP F E VN+   ++ + + + LR +ERG G T ACGS A A+       +K 
Sbjct: 178 LGKKISLHPSFPEQVNVGFMQIVNSQHIKLRVFERGSGETQACGSGAVAAAAVGCLYYKM 237

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           ++ + V + GG LLI+W + N  + +TG A   +EG L
Sbjct: 238 DKHIKVTLPGGDLLIDWPEFNKPICLTGPAIFVYEGTL 275


>gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803]
 gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803]
          Length = 288

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L  + IP+    +    R+ F      + F      VSMGNPHA+ FVE D+
Sbjct: 122 KIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|332286573|ref|YP_004418484.1| diaminopimelate epimerase [Pusillimonas sp. T7-7]
 gi|330430526|gb|AEC21860.1| diaminopimelate epimerase [Pusillimonas sp. T7-7]
          Length = 290

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 131/278 (47%), Gaps = 8/278 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D       +T +   AL+        DQI+L+        D   RI N 
Sbjct: 1   MHGAGNDFVVLDGVRQSIELTPERARALADRHFGIGADQILLVDAPLHPEADFRYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV+ CGNG RC VRF+  +   +R     E   GI+      DG++SV+MG+   + 
Sbjct: 61  DGSEVEHCGNGARCFVRFVHEQGLSRRNPLRAEIKTGIITLDNTGDGNVSVEMGQTRFEP 120

Query: 128 KLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           + +       +      D     P+         +V++ NPHA+  V+ D+    + + G
Sbjct: 121 QALDFDAQDLQSAAYADDTLWTLPLPGHGDVQISLVAISNPHAVQLVD-DVQTAPVGTIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  HP F + VN    +V    ++ LR +ERG G T ACG+ ACA+ VA       + 
Sbjct: 180 PLVESHPRFKQRVNAGFMQVLDRNTIKLRVYERGAGETLACGTGACAAAVAGIRRGLLDS 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            V V   GG L I W  +N + M+G A   + G++DI 
Sbjct: 240 PVLVHTRGGPLTITWS-DNSLRMSGPAVTVFAGQVDID 276


>gi|150006986|ref|YP_001301729.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503]
 gi|166225741|sp|A6L8U3|DAPF_PARD8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149935410|gb|ABR42107.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503]
          Length = 269

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 127/280 (45%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +   +  I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMAYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI   +   +     ++  
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +    +  +A   +                +    V+SMGNPH + FV+ ++    LAS
Sbjct: 123 DMGMPAVGEMALEVEA------------GGEIYTGTVISMGNPHLVIFVD-EMDQVGLAS 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA     KT
Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|56421492|ref|YP_148810.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426]
 gi|81557752|sp|Q5KVP4|DAPF_GEOKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|56381334|dbj|BAD77242.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426]
          Length = 290

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 25/292 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDF 55
           M+S    F KM G+GN  + +D+    + +  + + A++            D ++LI   
Sbjct: 1   MRSF--SFTKMHGLGNSYIYVDLF--RETLPEEELPAIARSVADVHTGIGSDGLILICPS 56

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRD 113
           + A V   +RI N DGSE ++CGNG+RCV ++          TF  ET+ G++ A+    
Sbjct: 57  EKAPV--KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVSDRTFLIETLSGLVEARVAVA 114

Query: 114 G----SISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                S++VDMGEP L+   IP L    +++  + F I    +        VSMGNPH I
Sbjct: 115 DGEVTSVTVDMGEPRLERSAIPMLGPEAERVVAEPFAIAGGEYEI----TAVSMGNPHVI 170

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           F+V+ D+    + + G L+ K P F EGVN+    V +   L  R WERG G+T ACG+ 
Sbjct: 171 FYVD-DIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTG 229

Query: 229 ACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           ACA+VVAS    KT       V + GG L I W  +  V MTG A+    G 
Sbjct: 230 ACAAVVASVLNGKTARGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGV 281


>gi|78046245|ref|YP_362420.1| diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123585937|sp|Q3BXU3|DAPF_XANC5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|78034675|emb|CAJ22320.1| Diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 284

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 120/283 (42%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      +   F     +     +       +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPAQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283


>gi|261420393|ref|YP_003254075.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61]
 gi|319768060|ref|YP_004133561.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52]
 gi|261376850|gb|ACX79593.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61]
 gi|317112926|gb|ADU95418.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52]
          Length = 290

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/292 (33%), Positives = 147/292 (50%), Gaps = 25/292 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDF 55
           M+S    F KM G+GN  + +D+    + +  + + A++            D ++LI   
Sbjct: 1   MRSF--SFTKMHGLGNSYIYVDLF--RETLPEEELPAIARSVADVHTGIGSDGLILICPS 56

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRD 113
           + A     +RI N DGSE ++CGNG+RCV ++       +  TF  ET+ G++ A+    
Sbjct: 57  EKAP--LKMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVA 114

Query: 114 G----SISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                S++VDMGEP L+   IP+     +++  + F I    +        VSMGNPH I
Sbjct: 115 DGEVTSVTVDMGEPRLERSAIPMVGPKAERVVAEPFTIAGGEYEM----TAVSMGNPHVI 170

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           F+V+ D+    + + G L+ K P F EGVN+    V +   L  R WERG G+T ACG+ 
Sbjct: 171 FYVD-DIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTG 229

Query: 229 ACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           ACA+VVAS    KT       V + GG L I W  +  V MTG A+    G 
Sbjct: 230 ACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGV 281


>gi|169404550|pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
           Diaminopimelate Epimerase From Bacillus Anthracis
 gi|169404551|pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
           Diaminopimelate Epimerase From Bacillus Anthracis
          Length = 308

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 26  FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 81

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 82  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 141

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 142 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 196

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 197 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 256

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 257 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 303


>gi|301308826|ref|ZP_07214778.1| diaminopimelate epimerase [Bacteroides sp. 20_3]
 gi|300833350|gb|EFK63968.1| diaminopimelate epimerase [Bacteroides sp. 20_3]
          Length = 269

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +   +  I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI   +   +         
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIE--------- 113

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              +   I +      +      +       +    V+SMGNPH + FV+ ++   DLAS
Sbjct: 114 -REEVTEITVDMGMPAVGEIALEVEA--GGEIYTGTVISMGNPHLVIFVD-EMDQADLAS 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA     KT
Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|163869368|ref|YP_001610624.1| diaminopimelate epimerase [Bartonella tribocorum CIP 105476]
 gi|189082826|sp|A9IZW1|DAPF_BART1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|161019071|emb|CAK02629.1| Diaminopimelate epimerase [Bartonella tribocorum CIP 105476]
          Length = 283

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 124/285 (43%), Positives = 169/285 (59%), Gaps = 5/285 (1%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM+G+GN+I+V DMR     +T  AI ALS D   HFDQIM I +      D  I I
Sbjct: 4   PFSKMDGLGNQIIVADMRESTQALTPQAILALSADPEMHFDQIMAIRNPTKNEADFHIEI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS+ ++CGNG RCV+ +LT     ++F  E   GI+  K   D  ISVDMG P  +
Sbjct: 64  WNADGSKAKACGNGTRCVIAWLTDHNFGENFRLEAPTGIIEGKRQADNLISVDMGCPNFN 123

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  ++S+GN HAIFFVE+D+ H  L  +G  
Sbjct: 124 AKEMPVSREIVDTNHIDITAGP-----LKDACLISIGNLHAIFFVENDVQHIPLEKYGPK 178

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA +TS +SL+LRTWERG GLT ACGSAACA  VA+     T R +
Sbjct: 179 LEHDPLFPERCNISIACITSKKSLNLRTWERGAGLTQACGSAACAGAVAAYRRSLTQRHI 238

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            V + GG L I + +++H+ MTG  K ++ G L+  TG + K N 
Sbjct: 239 DVNLPGGKLNIFYREDDHIIMTGPIKYQFSGFLNPLTGCYKKDNS 283


>gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
 gi|81568769|sp|Q72YE7|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
          Length = 288

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 DQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|296505379|ref|YP_003667079.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171]
 gi|296326431|gb|ADH09359.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171]
          Length = 288

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +    
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+  V+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYE 283


>gi|121602373|ref|YP_988358.1| diaminopimelate epimerase [Bartonella bacilliformis KC583]
 gi|166224243|sp|A1UQV5|DAPF_BARBK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|120614550|gb|ABM45151.1| diaminopimelate epimerase [Bartonella bacilliformis KC583]
          Length = 282

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 125/284 (44%), Positives = 169/284 (59%), Gaps = 6/284 (2%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            F+KM G+GNKI+V D+R    NIT  AI AL+++  THFDQIM IH       D  I I
Sbjct: 4   PFSKMNGLGNKIIVADLRKAIHNITPQAIQALASNPQTHFDQIMAIHPPTQ-DADFRIEI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  ++CGNG RCV+ +L +     +F  ET  GI+  K   DG ISVDMG P L+
Sbjct: 63  WNADGSMAKACGNGTRCVIEWLANHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLN 122

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K +P++R     +      GP     L++  +VS+GN HAIFF+E ++ +  L  +G  
Sbjct: 123 AKDMPVSREIIDTNHVDITAGP-----LQDACLVSVGNLHAIFFIESNIQNIPLEKYGPK 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L   P+F E  N+SIA++TS +SL LRTWERG GLT ACGSAACAS VA+     T R +
Sbjct: 178 LEHDPLFPERCNISIAQITSKKSLTLRTWERGAGLTQACGSAACASAVAAYRRGLTERHI 237

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            V +  G L I + D+ H+ MTG  + E+ G  +  TG + K +
Sbjct: 238 DVNLPKGILSILYRDDEHIIMTGPTEHEFSGLFNPLTGTYKKDH 281


>gi|30264977|ref|NP_847354.1| diaminopimelate epimerase [Bacillus anthracis str. Ames]
 gi|49187796|ref|YP_031049.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne]
 gi|50196964|ref|YP_052652.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|52140590|ref|YP_086240.1| diaminopimelate epimerase [Bacillus cereus E33L]
 gi|165870848|ref|ZP_02215500.1| diaminopimelate epimerase [Bacillus anthracis str. A0488]
 gi|167634949|ref|ZP_02393267.1| diaminopimelate epimerase [Bacillus anthracis str. A0442]
 gi|167639995|ref|ZP_02398263.1| diaminopimelate epimerase [Bacillus anthracis str. A0193]
 gi|170685806|ref|ZP_02877029.1| diaminopimelate epimerase [Bacillus anthracis str. A0465]
 gi|170706937|ref|ZP_02897394.1| diaminopimelate epimerase [Bacillus anthracis str. A0389]
 gi|177652291|ref|ZP_02934794.1| diaminopimelate epimerase [Bacillus anthracis str. A0174]
 gi|190567303|ref|ZP_03020218.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I]
 gi|196040444|ref|ZP_03107744.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99]
 gi|227817708|ref|YP_002817717.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684]
 gi|228988182|ref|ZP_04148279.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229603550|ref|YP_002869180.1| diaminopimelate epimerase [Bacillus anthracis str. A0248]
 gi|254687270|ref|ZP_05151127.1| diaminopimelate epimerase [Bacillus anthracis str. CNEVA-9066]
 gi|254725282|ref|ZP_05187065.1| diaminopimelate epimerase [Bacillus anthracis str. A1055]
 gi|254735393|ref|ZP_05193101.1| diaminopimelate epimerase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740660|ref|ZP_05198351.1| diaminopimelate epimerase [Bacillus anthracis str. Kruger B]
 gi|254753078|ref|ZP_05205114.1| diaminopimelate epimerase [Bacillus anthracis str. Vollum]
 gi|254761420|ref|ZP_05213441.1| diaminopimelate epimerase [Bacillus anthracis str. Australia 94]
 gi|81685654|sp|Q632C7|DAPF_BACCZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|81715620|sp|Q81XR2|DAPF_BACAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767089|sp|C3PDH0|DAPF_BACAA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767090|sp|C3LC72|DAPF_BACAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|30259654|gb|AAP28840.1| diaminopimelate epimerase [Bacillus anthracis str. Ames]
 gi|49181723|gb|AAT57099.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne]
 gi|50083026|gb|AAT70160.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor']
 gi|51974059|gb|AAU15609.1| diaminopimelate epimerase [Bacillus cereus E33L]
 gi|164713357|gb|EDR18882.1| diaminopimelate epimerase [Bacillus anthracis str. A0488]
 gi|167512076|gb|EDR87454.1| diaminopimelate epimerase [Bacillus anthracis str. A0193]
 gi|167529699|gb|EDR92448.1| diaminopimelate epimerase [Bacillus anthracis str. A0442]
 gi|170128040|gb|EDS96910.1| diaminopimelate epimerase [Bacillus anthracis str. A0389]
 gi|170670270|gb|EDT21010.1| diaminopimelate epimerase [Bacillus anthracis str. A0465]
 gi|172082297|gb|EDT67363.1| diaminopimelate epimerase [Bacillus anthracis str. A0174]
 gi|190561807|gb|EDV15777.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I]
 gi|196028576|gb|EDX67183.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99]
 gi|227005634|gb|ACP15377.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684]
 gi|228771479|gb|EEM19948.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229267958|gb|ACQ49595.1| diaminopimelate epimerase [Bacillus anthracis str. A0248]
          Length = 288

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842]
 gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|226724203|sp|B7IMV5|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842]
 gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 288

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 144/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|325294066|ref|YP_004279930.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3]
 gi|325061919|gb|ADY65610.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3]
          Length = 300

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 145/292 (49%), Positives = 190/292 (65%), Gaps = 4/292 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V+FAKM G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DAFI 
Sbjct: 5   VEFAKMNGLGNKILVVDMRGRRDMVTPAAAIALNADPATQFDQIMAIHDPRVGGTDAFID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+NCDG++ Q+CGNG RCVV+ L+S   + +FTF+T+ GIL A E+ DG ISVDMG P  
Sbjct: 65  ILNCDGTKAQACGNGTRCVVQALSSETGKTTFTFQTVAGILNAVEHEDGMISVDMGLPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F    R    IGP++   L +P V+SMGNPHAIF+V+ D   +DL  FG 
Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMEFDLERFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HPMF E  N+++A+V S  +L  RTWERG GLT ACGSAACA+ V++    +T R 
Sbjct: 185 LLENHPMFPEKANITLAQVISDSALHTRTWERGAGLTLACGSAACAAAVSAARTGRTGRK 244

Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
           V++ +        L IEW ++NHV MTG A+ EW G +D  +G + +    +
Sbjct: 245 VTIDVASSPVRVPLTIEWREDNHVIMTGPAEWEWSGMVDPISGAFSRDAVAE 296


>gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
 gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
          Length = 286

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSD--AINALSTD-DNTHFDQIMLIHDFQDASVD 61
           F K  G GN  ++ID R  +     I+ +   I  L         D ++ I +  + +  
Sbjct: 6   FEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILEP-NGNNH 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSIS 117
           A + I N DGSE Q CGNG+RC+V++L +  K       +  ET  G+ +A+ N  G IS
Sbjct: 65  ARMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQYND-GQIS 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG+PI+D K IP   + DK              F    + V MGNPH IFFVE D+  
Sbjct: 124 VKMGKPIIDIKSIPT--NIDKKQNFLPAFLFKESNFEYEGYAVGMGNPHLIFFVE-DITK 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L+  G +   H +F E  N+  +++ + +++ +  WERG G T ACG+ ACA  VA+ 
Sbjct: 181 ISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVHVAAF 240

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            L   N    + + GG L I W      + M+G AKK + G   +
Sbjct: 241 NLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSGNYFL 285


>gi|294625640|ref|ZP_06704263.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600063|gb|EFF44177.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 284

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+  A V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283


>gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1351

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 137/289 (47%), Gaps = 14/289 (4%)

Query: 2    QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60
            + + + F KM G GN  +  +      +     A+N          D ++L+   + A  
Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGIGGDGVILVCRSKVA-- 1125

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD----G 114
            D  +R+ N DGSE + CGNG+RCV +F+       R   T ET+ GI+  K +R      
Sbjct: 1126 DGRMRMFNLDGSEGKMCGNGIRCVAKFMRDNGLVDRDLMTIETLSGIIKVKLSRHYGEVN 1185

Query: 115  SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              +VDMG  ILD   IP     D  +    +          N   VSMGNPH I F+ ++
Sbjct: 1186 GATVDMGAAILDPVKIPCTLPAD-ENGMVVNREVDIAGEKHNVTCVSMGNPHCIVFM-NN 1243

Query: 175  LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
            +   ++   G      P+F E VN    +V    +L +R WERG G T ACG+ ACA+VV
Sbjct: 1244 IDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACAAVV 1303

Query: 235  ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+        +  V+V + GG L I +  +  V+MTGEA   +EG + +
Sbjct: 1304 AAVLNGYCPKDEEVTVMLRGGNLTIRYT-DETVYMTGEAVTVFEGDIRV 1351


>gi|315650526|ref|ZP_07903592.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986]
 gi|315487181|gb|EFU77497.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986]
          Length = 267

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 15/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + +D       N +  AI           D ++LI     A  D  +
Sbjct: 1   MKFVKMQGAGNDYVYVDCFKEKIKNPSEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DGS    CGNG RCV ++       KS  F    G  +        I V+  +  
Sbjct: 59  DMYNADGSRGLMCGNGARCVAKYAYDHGYVKSENFTMETGAGI------KYIKVEPKDGK 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLAS 182
            ++  + + ++   +    F    + +   +    V +GNPHA+++++  + L + DL  
Sbjct: 113 AEYINVNMGKA---VITSEFPEKILINGEEKEFIGVDIGNPHAVYYIDSLEKLQNMDLNR 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G    KH  FS+ VN     +   +++ +R WERG G T ACG+ ACAS  A+      
Sbjct: 170 VGEYYEKHERFSQKVNSEFIYIKDRKNIYMRVWERGSGETLACGTGACASAFATMKKGAC 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           + +V V +LGG L I   +N+ ++M G+A+  + G+++
Sbjct: 230 DTSVRVHLLGGDLDISL-ENDEIYMRGKAEYVFTGEIN 266


>gi|300117992|ref|ZP_07055749.1| diaminopimelate epimerase [Bacillus cereus SJ1]
 gi|298724646|gb|EFI65331.1| diaminopimelate epimerase [Bacillus cereus SJ1]
          Length = 288

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    +  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGRMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|298377411|ref|ZP_06987364.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19]
 gi|298265825|gb|EFI07485.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19]
          Length = 269

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +   +  I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI   +   +         
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIE--------- 113

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              +   I +      +      +       +    V+SMGNPH + FV+ ++   DLAS
Sbjct: 114 -REEVTEITVDMGMPAVGEIALEVEA--GGEIYTGTVISMGNPHLVIFVD-EMDQVDLAS 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA     KT
Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 289

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 11/286 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           + M+ F+KM G+GN  +VID        ++   + +  + T   +   D ++ +      
Sbjct: 2   TRMILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SG 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSI 116
             D   RI N DGSE + CGNG+RC  +F+      +    E     GI   +   +   
Sbjct: 61  EGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGA 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V     +            D  + +                 +S+GNPHAI FV+ D  
Sbjct: 121 VVSSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLTALSVGNPHAIIFVD-DAE 179

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G  +  HP+F E +N+    V S   + + TWERG G T ACG+ A ASV+A 
Sbjct: 180 GVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASVIAG 239

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
             L K + +V V + GG L I+ + +      +M G+A   ++G L
Sbjct: 240 VKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 285


>gi|262384259|ref|ZP_06077394.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B]
 gi|262293962|gb|EEY81895.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B]
          Length = 269

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 127/280 (45%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +   +  I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI   +   +         
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIE--------- 113

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              +   I +      +      +       +    V+SMGNPH + FV+ ++ H DLAS
Sbjct: 114 -REEVTEITVDMGMPAVGEIALEVEA--GGEIYTGTVISMGNPHLVIFVD-EMDHVDLAS 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA     KT
Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|255015978|ref|ZP_05288104.1| diaminopimelate epimerase [Bacteroides sp. 2_1_7]
          Length = 269

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 127/280 (45%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +   +  I           D ++LI     A  D  +
Sbjct: 5   IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI   +   +     ++  
Sbjct: 63  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +    +  +A   +                +    V+SMGNPH + FV+ ++    LAS
Sbjct: 123 DMGMPAVGEMALEVEA------------GGEIYTGTVISMGNPHLVIFVD-EMDQVGLAS 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA     KT
Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269


>gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus sp. MC-1]
 gi|166225728|sp|A0LE31|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus sp. MC-1]
          Length = 278

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
            F KM G+GN  +V+D       ++                DQ++ +    +   DA +R
Sbjct: 4   RFIKMHGLGNDFVVLDHLESPRELSPQEARFWADRRRGVGCDQVVQLLPGVEGG-DAQMR 62

Query: 66  IINCDGSEVQSCGNGMRCV-VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           I N DGS  + CGN MRCV +     R    +   ET+ GI+  +     +I+VDMG P 
Sbjct: 63  IYNPDGSRAEMCGNAMRCVGLYLHEQRGMAAALAVETLAGIMRPQVTSALAITVDMGRPQ 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              + IPL +  + +D     +G  ++        +SMGNPH +  V  D   ++LA  G
Sbjct: 123 WAGRAIPLDQDGEMIDA-PLEVGGQSYRM----TALSMGNPHGVVRV-ADAEGFELAKVG 176

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+  H +F   +N  + +V S   + +R WERG G+T ACG+ ACA+ VA        R
Sbjct: 177 PLVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVACMRQGWVER 236

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +V + GG L I W +++ V M+G A + + G+L
Sbjct: 237 DCTVVLDGGELQIVWLESDRVMMSGPATEVFRGEL 271


>gi|291561479|emb|CBL40278.1| diaminopimelate epimerase [butyrate-producing bacterium SS3/4]
          Length = 264

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 26/282 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++               +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFEETVEDPCGTAKMVSDRHFGIGSDGLILIKPSRVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            + N DGS    CGNG+RCV ++            +      +       K+ + G ++V
Sbjct: 59  DMYNLDGSRGAMCGNGIRCVGKYSYDHGIVDKTEIDVETASGIKHLSMKLKDGKVGLVTV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG P    +             +   +    + F      VSMGNPHA+ F++  +   
Sbjct: 119 DMGRPEQTSE-----------IGEPITVAGKEYRFTG----VSMGNPHAVVFMDG-IKDM 162

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G     H  F +  N     +     +++R WERG G T ACG+ ACA+ VA   
Sbjct: 163 EIEKIGPSFEVHEKFPDRTNTEFVEIVDRGHVNMRVWERGSGETLACGTGACATAVACIL 222

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              T+  V V +LGG LLI W  + + VFMTG A + + G++
Sbjct: 223 NGLTDDEVRVTLLGGDLLIRWDREKDTVFMTGPAAEVFHGEI 264


>gi|29840865|sp|Q8PPQ1|DAPF_XANAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 284

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 85/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+  A+V     + LR +ERGVG T ACGS ACA+      
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283


>gi|253682263|ref|ZP_04863060.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873]
 gi|253561975|gb|EES91427.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873]
          Length = 273

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 125/280 (44%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G GN  +VID R    N   +  A            D I+L+   + +  D  
Sbjct: 1   MYFTKMQGTGNDFVVIDDRKGIFNGRESEVAKKVCHRRFGIGADGILLVRKSEIS--DIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
           + IIN DGS    CGNG+RC  R++       +     ET  GI +A  N   +  + + 
Sbjct: 59  MEIINADGSYAAMCGNGIRCFARYVYDSKIVLKDIINIETGDGIKIAHLNILDNTVLGIT 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             + ++ L P     +  ++       +N+       +        +    +D+      
Sbjct: 119 INMGEFSLNPEDIPANCKEKIMNKKIYINNKEYIINSMKLGVPHTVVMCKINDID----I 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  + K+ +F EG N++   V   +++ ++TWERG G T ACG+ +CAS   S  L  
Sbjct: 175 QEGKYIEKYDLFKEGTNVNFCEVIDEDTIKVKTWERGAGPTLACGTGSCASFAISNILGY 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               V V + GG L+ E   +N VFMTG A+  + G++++
Sbjct: 235 VGDKVKVLVPGGELITELK-DNKVFMTGPAEIVFTGEINL 273


>gi|91762613|ref|ZP_01264578.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718415|gb|EAS85065.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 274

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 4/276 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R    N+  D I  +        DQ++LI   ++  +DA I 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANIE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV   L+    +K  T  T  G L +K   +  +  ++G P +
Sbjct: 61  FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W+ IPL++  D  D  +  I   N+        +++GNPH IFFV+ D+  +DL + G 
Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFVD-DIEAFDLKNIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  HP+F E  N+++A+V +   + ++ WERG GLT ACG+AACA+ VA+   +   + 
Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             ++   G L I   + N + M G         + +
Sbjct: 239 TDIEFALGSLTISIDERNSIHMKGPVSDIKNINIKL 274


>gi|160943083|ref|ZP_02090320.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445552|gb|EDP22555.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104700|emb|CBL02244.1| diaminopimelate epimerase [Faecalibacterium prausnitzii SL3/3]
          Length = 279

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 120/281 (42%), Gaps = 9/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G  N  + +D R     +NI + +        +   D I+ I     A  DA 
Sbjct: 3   LSFTKMQGCANDYIYLDCRTSGVPENIAALSERLSRRHFSIGADGIICICAPVTAGADAM 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +RI N DGSE + CGNG+RCV  +L +    K     +T+ G+       +G   V+MG 
Sbjct: 63  MRIFNADGSEGKMCGNGIRCVAEWLYTHGMAKPKLAIDTLSGLKTVARMGEGLWQVEMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +P   + +  +     +       L     +S+GNPH +  V  ++    L  
Sbjct: 123 YTAMAAALP---AVNMGEGPLVDLPLEVEENLWRVTCISVGNPHCVTIV-PEVDSLKLEQ 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A   L   
Sbjct: 179 IGPGFEHHENFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTELGIC 238

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                V V++ GG L I       + MTG A+   EG  ++
Sbjct: 239 PAGEDVHVQLRGGELTIRVLPGKQLLMTGAAETVCEGTTEV 279


>gi|86359535|ref|YP_471427.1| diaminopimelate epimerase [Rhizobium etli CFN 42]
 gi|123510509|sp|Q2K386|DAPF_RHIEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|86283637|gb|ABC92700.1| diaminopimelate epimerase protein [Rhizobium etli CFN 42]
          Length = 301

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 150/296 (50%), Positives = 199/296 (67%), Gaps = 5/296 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T  A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMGK 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA 
Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+VTS  ++  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
            R V + +        L IEW + ++HV MTG A+ EW G+LD  TG W + +  +
Sbjct: 242 GRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDDARE 297


>gi|28198606|ref|NP_778920.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1]
 gi|28056690|gb|AAO28569.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1]
          Length = 275

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 1   MHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGE 122
           RI N DGS  Q CGNG RCV  +L       +  F     +        G    +V+MG 
Sbjct: 61  RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   + +      +       +     VSMGNPHA+  V+  +    +  
Sbjct: 121 PVFEPERIPLSGFPNALGEYVLSLQG----EVLCCGAVSMGNPHAVVEVDL-IDVAPVER 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+S  +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 176 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 235

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            R V V + GG L ++W      V ++G A+  ++G  
Sbjct: 236 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 273


>gi|295698459|ref|YP_003603114.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA]
 gi|291157427|gb|ADD79872.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA]
          Length = 280

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 11/286 (3%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           M+  ++ F+KM G+GN  ++++            I   +       FDQ++++ +   + 
Sbjct: 1   MKKKIL-FSKMHGLGNDFVIVNTIHQKFFPRPKIIRMFARRTLGIGFDQLLILRESHSSR 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK--ENRDGSIS 117
            D + +I N DG+E   CGNG RC+ +++   + +K F     +   V    ++R   I+
Sbjct: 60  FDFYCQIFNSDGTESFQCGNGFRCLAKYIYVNINKKPFHIIRTKKHTVITSIKDRGKEIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P    K +      + + +        NH       +V++GN H +F ++D    
Sbjct: 120 VNMGTPRFISKKVLTVFQKEWLRQLLTFEKEYNHFE-----MVNIGNSHLVFIIQDSKEI 174

Query: 178 YDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +    +     + +F +G+N+++ ++ + + + L+ +ERG G T +CGS ACASV   
Sbjct: 175 VRIFRLIHSSLRINELFPKGININLMQIINRKKIFLKVYERGSGETKSCGSGACASVAFG 234

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
                 N  V V    G L + W   +  +FMTG A   ++G + I
Sbjct: 235 IKYGFLNNLVFVYSEEGYLKVYWKGRDYPIFMTGPATYVYDGSISI 280


>gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W]
 gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
 gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
 gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187]
 gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
 gi|81613513|sp|Q6HBW8|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226724205|sp|B7HUS8|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767091|sp|C1EX98|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W]
 gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
 gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
 gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187]
 gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
          Length = 288

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 283


>gi|58384654|gb|AAW72674.1| diaminopimelate epimerase [Buchnera aphidicola (Cinara cedri)]
          Length = 281

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 12/285 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           ++   + F KM G+GN  ++I     +   +S+ I   S       FDQ++LI   ++  
Sbjct: 3   LRKKFIFFFKMHGLGNDFVLI-YFKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
              + RI N +G EV+ CGNG RCV  +L    ++K K     T    L  +  +     
Sbjct: 62  AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG PI   K IP          ++F    + +       VV++GNPH +  V ++L +
Sbjct: 122 VDMGTPIFTPKNIPFITK-----TEKFFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G+ ++ + +F EGVN+   ++ S + + LR +ER VG T ACGS ACA+V    
Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280
                +  V VK+L G L I W+    + ++M+G+A   ++G + 
Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280


>gi|237756085|ref|ZP_04584662.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691757|gb|EEP60788.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 286

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +V+D       +T D I  +         D I++   +     D  +RI
Sbjct: 7   FVKSHGLGNDYIVLDSDKIDFELTQDLIKKICDVHYGIGSDGILV--KYNSDVADFKLRI 64

Query: 67  INCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGS------ISV 118
            N DGSE +  GNG+R   +  +    + ++ FT ET  GI+ AK            I+V
Sbjct: 65  FNPDGSEAEKSGNGLRIFCKFLYDYGYIDKEEFTVETKGGIVKAKIEEKNRFGKAKIITV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ I + K IP+    ++   ++  +G            VS+GNPH +   +++L   
Sbjct: 125 DMGKAIFNAKQIPVNTDKEEFMSEKITVGDKEFE----VSCVSVGNPHCVII-KENLDEE 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++  +G ++  HP+F   +N+   +  S     +  WERG G T A GS++C        
Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              T+R + +KM+GG L I   ++ ++ MTGE ++   G +
Sbjct: 240 KGLTDREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYI 280


>gi|325299792|ref|YP_004259709.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170]
 gi|324319345|gb|ADY37236.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170]
          Length = 266

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 20/280 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  + ++          +   A S        D ++LI        D  +
Sbjct: 3   IEFTKMQGAGNDYIYVNTLIYPLPNPEELAVAWSRPHTGIGSDGLVLIGSS--GKADFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE + CGN  RC+    +     ++   T +T+ GI   + + +      +  
Sbjct: 61  RIFNADGSEAKMCGNASRCIGKYVYEYGLTRKTEVTLDTLSGIKTLRLHVEDGKVDAVTV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +     I               +        R    VSMGNPH + FV+ D+   DL  
Sbjct: 121 DMGIPAEI-------------HPVDLGEGYPYREGIAVSMGNPHLVIFVD-DMEQVDLPR 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L +HP+F + VN+  A+V +   + +R WERG G+T ACG+ ACA+ VAS   H+ 
Sbjct: 167 VGPVLERHPLFPDRVNVEFAQVLAPGRVRMRVWERGSGITMACGTGACATAVASAYTHRC 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                + M GG L I W      +FMTG A+K ++G + +
Sbjct: 227 PGESDIIMDGGTLRIRWAGEGTRLFMTGPAEKVFDGVITV 266


>gi|301056426|ref|YP_003794637.1| diaminopimelate epimerase [Bacillus anthracis CI]
 gi|300378595|gb|ADK07499.1| diaminopimelate epimerase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 288

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++       +   F  ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFAIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|118480026|ref|YP_897177.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam]
 gi|166224241|sp|A0RKC7|DAPF_BACAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118419251|gb|ABK87670.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam]
          Length = 288

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGN HA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNSHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 283


>gi|256842003|ref|ZP_05547508.1| diaminopimelate epimerase [Parabacteroides sp. D13]
 gi|256736319|gb|EEU49648.1| diaminopimelate epimerase [Parabacteroides sp. D13]
          Length = 286

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++      +   +  I           D ++LI     A  D  +
Sbjct: 22  IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 79

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSE   CGN  RC+ +++      ++   T ET+ GI   +   +     +   
Sbjct: 80  HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE--- 136

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                    +             +       +    V+SMGNPH + FV+ ++   DLAS
Sbjct: 137 ---------VTVDMGMPAVGEIALEVEAGGEIYTGTVISMGNPHLVIFVD-EMDQVDLAS 186

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL   P+F +  N+   +V   + + +R WERG G+T ACG+ ACA+ VA     KT
Sbjct: 187 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 246

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            R   V M GG L IEW + +  VFMTG A   +EG + +
Sbjct: 247 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 286


>gi|294666819|ref|ZP_06732052.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603403|gb|EFF46821.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 284

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPVTAHAVERLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+  A V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283


>gi|270308057|ref|YP_003330115.1| diaminopimelate epimerase [Dehalococcoides sp. VS]
 gi|270153949|gb|ACZ61787.1| diaminopimelate epimerase [Dehalococcoides sp. VS]
          Length = 284

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 140/280 (50%), Gaps = 8/280 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K++ +GN  +++D +G   +    A++          D +ML+     A  D  +R
Sbjct: 1   MKFTKLQSVGNDFVLVDPQGEERDWPKLALHMCHRHFGAGADGLMLLLPS--AKADFRMR 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           I N DGSE + CGNG+RC++ ++ +      R   + ET+ GI  A+  +DG I   MG+
Sbjct: 59  IFNADGSEAEICGNGLRCLIHYIVANKLIGSRDELSIETLAGIRHAQIFKDGRIRTTMGK 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179
           P+ +   IP+A   D        I               +VSMGNPHAI F    +  + 
Sbjct: 119 PMFEAHQIPVAAEPDPKHYSGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFL 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L   G+L+  H  F +  N  +A +   E + +R WERGVG T  CGS A A  VA+  L
Sbjct: 179 LGEVGSLVETHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + V +K+ GG L +EW  ++ V++TG+A+  + G+ 
Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIYTGEW 278


>gi|15889949|ref|NP_355630.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58]
 gi|22256736|sp|Q8UC03|DAPF_AGRT5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15157908|gb|AAK88415.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58]
          Length = 299

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 147/294 (50%), Positives = 191/294 (64%), Gaps = 4/294 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V+FAKM G+ NKILV+DMRG  D +T  A  AL+++  T FDQIM IHD +    DAFI 
Sbjct: 5   VEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDAFID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I+NCDG++ Q+CGNG RCVV+ L+S   + SFTF+T+ GIL A E+ DG ISVDMG P  
Sbjct: 65  ILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGLPRF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+  F    R    IGP++   L +P V+SMGNPHAIF+V+ D   +DL  FG 
Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLERFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HPMF E  N+++A+V S  +L  RTWERG GLT ACGSAACAS V++    +T R 
Sbjct: 185 LLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRTGRK 244

Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
           V++ +        L I+W ++NHV MTG A+ EW G +D  TG W +   +  A
Sbjct: 245 VTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWARDAVERGA 298


>gi|254524684|ref|ZP_05136739.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14]
 gi|219722275|gb|EED40800.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14]
          Length = 283

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 9/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S+ + F+KM G GN  +VID+R      T +    L+        DQI+ I   +     
Sbjct: 6   STALRFSKMHGAGNDFVVIDLRDGTAPPTPELAARLADRHTGVGCDQILTIEAPRADGSV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
           A  RI N DGS  + CGNG RC+  +L      +   F  ++       K   DG  +V 
Sbjct: 66  ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDVFVIDSPLASHEVKVLGDGQFAVT 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   +PL       +     +   +  F      VSMGNPHA+  V   +    
Sbjct: 126 MGVPAFEPSNVPLVGFAHPREEYLLPLQGESVRF----AAVSMGNPHAVIEVGL-IDAAP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  F   VN+  A+V   +   LR +ERGVG T ACGS ACA+ V     
Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPDHARLRVFERGVGETLACGSGACAAAVTLMQR 240

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            +  R   + + GG L I+W  +   V M G     +EG+ 
Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGEW 281


>gi|323141715|ref|ZP_08076589.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067]
 gi|322413790|gb|EFY04635.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067]
          Length = 297

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 119/294 (40%), Gaps = 18/294 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + +D               +S        D ++ +     A  D  +
Sbjct: 3   IEFTKMHGAGNDYVYVDCTKEMLPNPGAISEYVSHRRFGIGSDGLICVCKSDVA--DFKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE------TIRGILVAKENRDGSISV 118
           R+ N D SE + CGNG+RCV +F+  +      T             +V +        V
Sbjct: 61  RMFNADRSEGKMCGNGVRCVAKFVHDKGLTDKTTITLETLSGVKEIEMVVENGEVVGAKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           DMG+P+     IP+                 H          N   +SMGNPH + FV+ 
Sbjct: 121 DMGKPVFRATEIPMNCDHYIFVDQAIVLNDNHDDVTKEKVFYNGTAISMGNPHFVTFVD- 179

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D+   +L   G     H +F EGVN    +V    ++  R WERG G T ACG+ A A  
Sbjct: 180 DVDSLNLEELGPQFEHHKLFPEGVNTEFVQVLDKNTVKFRVWERGSGETWACGTGASAVT 239

Query: 234 VASGCL---HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           VA   L    K    ++V   GG L +    N+HV + G A   ++G +DI   
Sbjct: 240 VACIMLNKAGKKGEPLNVHCKGGLLKVTHELNDHVTLEGNAVAVFDGVIDIPES 293


>gi|194367248|ref|YP_002029858.1| diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3]
 gi|194350052|gb|ACF53175.1| Diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3]
          Length = 283

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F+KM G GN  +VID+R      T +    L+        DQI+ I   +     
Sbjct: 6   SKALRFSKMHGAGNDFVVIDLRDGTVPPTPELAARLADRHTGVGCDQILTIEAPRAEGSV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
           A  RI N DGS  + CGNG RC+  +L      +  +F  ++       K   DG  +V 
Sbjct: 66  ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDAFVIDSPLASHQVKVLGDGHYAVT 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   +PL          R                VSMGNPHA+  V   +    
Sbjct: 126 MGVPAFEPANVPLVG----FAHPREEYLLPLQGETVRFAAVSMGNPHAVIEVGL-IDAAP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+LL +H  F   VN+  A+V +     LR +ERGVG T ACGS ACA+ V     
Sbjct: 181 VERVGSLLQQHASFPRSVNVGFAQVMNPAHARLRVFERGVGETLACGSGACAAAVTLMQR 240

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            +  R   + + GG L I+W  +   V M G     +EG+ 
Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGEW 281


>gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 288

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NIGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 279

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 9/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G  N  + +D R     +NI + +        +   D I+ I   Q A  D  
Sbjct: 3   LSFTKMQGCANDYIYLDCRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGADGM 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +RI N DGSE + CGNG+RCV  +L +    K     +T+ G+        G   V+MG 
Sbjct: 63  MRIFNADGSEGRMCGNGIRCVAEWLYTHGIAKETLAIDTLSGLKTVTHKGAGLWQVEMGA 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +P   + +  +               +   +S+GNPH +  VE D+    L  
Sbjct: 123 YSAMPASLP---AVNMGEEPLVDKELTVDGKTWHVTCISVGNPHCVTVVE-DVDSLKLEE 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H  F E +N    +V     L +R WERG G T ACG+  CA+V A   L   
Sbjct: 179 IGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTELGIC 238

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                + V++ GG L I       + MTG A+   EG  ++
Sbjct: 239 PAGEDIHVQLRGGVLTIRVLPGRQLLMTGAAETVCEGTTEV 279


>gi|294674621|ref|YP_003575237.1| diaminopimelate epimerase [Prevotella ruminicola 23]
 gi|294471930|gb|ADE81319.1| diaminopimelate epimerase [Prevotella ruminicola 23]
          Length = 267

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 16/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D    +      A I           D ++LI        D  +
Sbjct: 4   IHFTKMHGCGNDYIYVDTTQYNIPDPEAASIKWSHRHKGIGSDGLVLIGKSTVPEADFTM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           RI N DGSE   CGN  RC+ ++L  R               +   +    +S+ + +  
Sbjct: 64  RIFNADGSEAMMCGNASRCIGKYLYERGMTDLTEI------RLLTLSGVKVLSLHVTDGF 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           ++   + +     + +          H        VSMGNPH + F +       +   G
Sbjct: 118 VESVTVDMGEPVLENESQFLPSRNPGH-----GTFVSMGNPHYVIFTD---DVDQVGEAG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             L  HP F +  N+  ARV +   +  R WERG G+T ACG+ ACA+ VA+    K +R
Sbjct: 170 PALEYHPAFPQRCNIEFARVEADGGIRTRVWERGSGITQACGTGACATAVAAALTGKASR 229

Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              + M GG L IEW + +NHV+MTG A+   +G++ +
Sbjct: 230 TSQIVMDGGTLTIEWSEQDNHVYMTGPAEFVCDGEIAL 267


>gi|116515294|ref|YP_802923.1| hypothetical protein BCc_380 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257148|gb|ABJ90830.1| diaminopimelate epimerase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 281

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 12/285 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           ++   + F KM G+GN  ++I     +   +S+ I   S       FDQ++LI   ++  
Sbjct: 3   LRKKFIFFFKMHGLGNDFVLI-YSKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117
              + RI N +G EV+ CGNG RCV  +L    ++K K     T    L  +  +     
Sbjct: 62  AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG PI   K IP          ++F    + +       VV++GNPH +  V ++L +
Sbjct: 122 VDMGTPIFTPKNIPFITK-----TEKFFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           + +   G+ ++ + +F EGVN+   ++ S + + LR +ER VG T ACGS ACA+V    
Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280
                +  V VK+L G L I W+    + ++M+G+A   ++G + 
Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280


>gi|254292484|ref|YP_003058507.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814]
 gi|254041015|gb|ACT57810.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814]
          Length = 281

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 104/277 (37%), Positives = 157/277 (56%), Gaps = 9/277 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + +M G GN   ++D RG    ++++A+  ++   N   DQ++ + +      D F+R
Sbjct: 1   MKYYQMNGCGNAFAILDGRGEKLRLSAEAVRRIAKSAN--ADQVVSLENSMRG--DIFMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SISVDMGEP 123
           I N  GSEV +CGN  RCV   +     R +   ET  G+L+A  + +G   ISVDMG P
Sbjct: 57  IWNNTGSEVAACGNVSRCVGWIMMRERNRDTIKIETEAGLLIATRHGNGDTMISVDMGSP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           +L W+ IPLA   D    D   IGP++  +L+ P  V+MGNPH +FFV+ +L   D+   
Sbjct: 117 LLKWEEIPLAERMDTRGID-VKIGPIDAPYLQLPGAVNMGNPHCVFFVD-ELDAVDVVGI 174

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+  H MF E  N+  A+V   + + LR WER  GLT ACG+ ACA+VVA       N
Sbjct: 175 GPLIEGHMMFPEKANVGFAQVLGRDCIRLRVWERDAGLTKACGTGACAAVVAGVRKGLLN 234

Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           R+ +V + GG L I+W + ++HV MTG  + E + ++
Sbjct: 235 RSCTVFVDGGDLHIDWREKDDHVIMTGPIELERQAEI 271


>gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820]
 gi|226724202|sp|B7JDJ2|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820]
          Length = 288

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYE 283


>gi|222445674|ref|ZP_03608189.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435239|gb|EEE42404.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii
           DSM 2375]
          Length = 286

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTHFDQIMLIHDFQDASVD 61
           + F+KM GIGN   +ID         +D   A             D ++ +     A  D
Sbjct: 6   LKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--D 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS---- 115
              R+ N DGSE + CGNG+RC   F+  +   K++  T ET  GI   +   +      
Sbjct: 64  IGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVL 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             VDMG        IP+A   D+       +         N   +S+GNPHAI FV+ ++
Sbjct: 124 FKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLD----TTFNTTAISVGNPHAIIFVD-NI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A ++ ++
Sbjct: 179 DEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAIS 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
              L   +  V + + GG L    ++       FM G A+  ++G++
Sbjct: 239 GFKLGLFDSEVLLHLPGGDLKFNVYEKEEGLGAFMEGPAQLVFDGEI 285


>gi|311031748|ref|ZP_07709838.1| diaminopimelate epimerase [Bacillus sp. m3-13]
          Length = 284

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 21/291 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQD 57
           M+S    F KM G+GN  + ++M          ++ A+   +       D ++LI   + 
Sbjct: 1   MRSF--QFTKMHGLGNNYIYVNMFEEKLKEEELSNLAVKVANIHTGIGSDGMILICPSEV 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKEN 111
           A V   +RI N DGSE ++CGNG+RCV ++       +  TF+       +   +  +  
Sbjct: 59  APV--KMRIFNNDGSEGKNCGNGLRCVAKYAYEHGIVQRKTFKIETLSGLVEAEMELEAG 116

Query: 112 RDGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +  S++VDMGEP L  K IP L    + +  + F +    +        VSMGNPH IF+
Sbjct: 117 KVTSVTVDMGEPRLSTKEIPILVEEKEALVAEPFTVDGETYEI----TTVSMGNPHVIFY 172

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           ++ D+    L + G ++ K P F EGVN+    V + + L  R WERG G+T ACG+ AC
Sbjct: 173 LD-DIKDAPLTTLGPVVEKDPRFPEGVNVEFVEVVAEDELHFRVWERGSGITQACGTGAC 231

Query: 231 ASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A+VVAS   +KT  N+   V + GG L I W  +  V M G A+    G  
Sbjct: 232 AAVVASVLNNKTARNKETVVHLAGGDLFITWTKDGSVKMRGPAEVICTGSF 282


>gi|261349778|ref|ZP_05975195.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374]
 gi|288860562|gb|EFC92860.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374]
          Length = 286

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTHFDQIMLIHDFQDASVD 61
           + F+KM GIGN   +ID         +D   A             D ++ +     A  D
Sbjct: 6   LKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--D 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS---- 115
              R+ N DGSE + CGNG+RC   F+  +   K++  T ET  GI   +   +      
Sbjct: 64  IGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVL 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             VDMG        IP+A   D+       +         N   +S+GNPHAI FV+ ++
Sbjct: 124 FKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLD----TTFNTTAISVGNPHAIIFVD-NI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A ++ ++
Sbjct: 179 DEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAIS 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
              L   +  V + + GG L    ++       FM G A+  ++G++
Sbjct: 239 GFKLGLFDSEVLLHLPGGDLKFNVYEKKEELGAFMEGPAQLVFDGEI 285


>gi|182681289|ref|YP_001829449.1| diaminopimelate epimerase [Xylella fastidiosa M23]
 gi|32129480|sp|Q87DI4|DAPF_XYLFT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229813255|sp|B2IA16|DAPF_XYLF2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|182631399|gb|ACB92175.1| Diaminopimelate epimerase [Xylella fastidiosa M23]
 gi|307579740|gb|ADN63709.1| diaminopimelate epimerase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 284

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGE 122
           RI N DGS  Q CGNG RCV  +L       +  F     +        G    +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   + +      +       +     VSMGNPHA+  V+  +    +  
Sbjct: 130 PVFEPERIPLSGFPNALGEYVLSLQG----EVLCCGAVSMGNPHAVVEVDL-IDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+S  +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            R V V + GG L ++W      V ++G A+  ++G  
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 282


>gi|295101507|emb|CBK99052.1| diaminopimelate epimerase [Faecalibacterium prausnitzii L2-6]
          Length = 279

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/281 (28%), Positives = 117/281 (41%), Gaps = 9/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+G  N  + +D R     +NI + + +      +   D I+ I     A  D  
Sbjct: 3   LSFTKMQGCANDYIYLDCRESGVPENIAALSQDLSRRHFSIGADGIICICAPVTAGADGR 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGE 122
           +RI N DGSE Q CGNG+RCV  +L +    K     +T  G             V+MG 
Sbjct: 63  MRIFNADGSEAQMCGNGVRCVAEWLYTHGTAKETLVVDTGSGPKTITRKGRQLWQVEMGG 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +P   + +  +                   +S+GNPH +  V+ D+    L  
Sbjct: 123 YSAMAAALP---AVNMGEGPLVDCPLTVEGRTWRVACISVGNPHCVTVVD-DVDSLKLED 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G    KHP F E +N    +V     L +R WERG G T ACG+  CA+V A   L   
Sbjct: 179 IGPAFEKHPNFPERINTEFVQVVDSTHLKMRVWERGSGETWACGTGTCATVAALTELGVC 238

Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                V V++ GG L+I       + MTG A    EG  ++
Sbjct: 239 PAGEDVHVQLRGGELIIRVLPGKKLLMTGSAVTVCEGVTEV 279


>gi|71082963|ref|YP_265682.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|123647306|sp|Q4FP10|DAPF_PELUB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71062076|gb|AAZ21079.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 274

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 4/276 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   KM+G+GN  ++ID R    N+  D I  +        DQ++LI   ++  +DA + 
Sbjct: 3   IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANVE 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS   +CGNG RCV   L+    +K  T  T  G L +K   +  +  ++G P +
Sbjct: 61  FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W+ IPL++  D  D  +  I   N+        +++GNPH IFFV+ D+  +DL + G 
Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFVD-DIEAFDLKNIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +  HP+F E  N+++A+V +   + ++ WERG GLT ACG+AACA+ VA+   +   + 
Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             ++ + G L I   + N + M G         + +
Sbjct: 239 TDIEFVLGSLTISIDERNSIHMKGPVSDIKNINIKL 274


>gi|71897643|ref|ZP_00679888.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
 gi|71732546|gb|EAO34599.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
          Length = 284

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 126/278 (45%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGE 122
           RI N DGS  Q CGNG RCV  +L       +  F     +        G    +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   + +      +       +     VSMGNPHA+  ++  +    +  
Sbjct: 130 PVFEPERIPLSGFPNALGEYVLSLQG----EVLRCGAVSMGNPHAVVEIDL-IDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGPLLQQHAAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            R V V + GG L ++W      V ++G A+  ++G  
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 282


>gi|295401375|ref|ZP_06811346.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109665|ref|YP_003987981.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1]
 gi|294976590|gb|EFG52197.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214766|gb|ADP73370.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1]
          Length = 284

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 19/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++  A+   + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEETIPESLLSLLAVKVSNVNTGIGADGMILICPSKVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISV 118
           RI N DGSE ++CGNG+RCV +++        +SF  ET+ G++ A+   +     ++++
Sbjct: 64  RIFNSDGSEGKNCGNGLRCVAKYVYEHGIVNDRSFFIETLSGLVKAEVEVENGAVTNVTI 123

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P L    IP+     +++  + F +    +        VSMGNPH IF+V+ D+  
Sbjct: 124 DMGKPRLKRSEIPMVGPEAERVVAEPFEVDGQLYEI----TAVSMGNPHVIFYVD-DINQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G ++ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 AAVTSLGPIVEKDKRFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              KT  N+   V + GG L I W D  +V MTG A+    G 
Sbjct: 239 LNGKTARNKETIVHLAGGDLTITWTDEGNVRMTGPAETICTGV 281


>gi|298674444|ref|YP_003726194.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303]
 gi|298287432|gb|ADI73398.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303]
          Length = 276

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 21/284 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M++F K+ G GN  +VID         +     A+           D I+ I        
Sbjct: 1   MIEFTKLHGNGNDFIVIDEFENEIVPENQKADFAVKYCRRKFGIGADGILYI--SGSDKA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGS 115
           D  +R++  D SE + CGNG+RC+V++               T   +  +   K++    
Sbjct: 59  DMKMRLLQPDASEAEMCGNGIRCLVKYAYDNGYINLGESTVETIADVYNVKTRKDDGGFW 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V+MG+P+     IP     D    +                VV+ G PHA+ FVE+  
Sbjct: 119 VKVNMGKPLTKRSDIPAQGDSDDDFINVDLHD-------YPVSVVNTGVPHAVIFVEN-- 169

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             +++ +    +     F  G N++  R+ S + + +RT+ERGV   T +CG+ + AS  
Sbjct: 170 LDFNIQNTAPKIRFDETFPNGANVNFVRIDSNDEITIRTYERGVEDETLSCGTGSVASAY 229

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            S  L K N  V V   GG L IE      ++M G A+  ++G 
Sbjct: 230 ISNLLGKVNNPVLVHTKGGMLNIELDGKGFLYMEGPAETIYKGV 273


>gi|167535696|ref|XP_001749521.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771913|gb|EDQ85572.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1222

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 117/285 (41%), Gaps = 26/285 (9%)

Query: 1    MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59
            M ++ + FAKM G+GN  +V+D           +              +++I     +  
Sbjct: 948  MAATTIRFAKMHGLGNDFVVVDSVRQSLPPLGSSW-------------LLVIEPPPASGP 994

Query: 60   ---VDAFIRIINCDGSEVQSCGNGMRC---VVRFLTSRMKRKSFTFETIRGILVAKENRD 113
               +D   RI N DGSEV  CGNG RC    V               T    L      D
Sbjct: 995  ELQIDFVYRIFNADGSEVGQCGNGARCLAAYVYRYHLAQAGAQLRVRTRNSELTMHGTPD 1054

Query: 114  GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            G+I+V+MG P  D   +PL            +   +          VSMGNPH +  V+ 
Sbjct: 1055 GAITVNMGCPKFDPAQVPLLAPARAD----VYHLALESGATICCGAVSMGNPHLVTLVD- 1109

Query: 174  DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
            D+    +   G  L  H    E  N+   ++    S+ LR +ERG G T ACGS ACA+V
Sbjct: 1110 DVGTAPVLELGPQLESHARCPERANVGFMQIVDAHSVRLRVFERGAGETRACGSGACAAV 1169

Query: 234  VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
                   +    V+V + GG L I W   +  ++MTG A   +EG
Sbjct: 1170 AVGIVQDRLLSPVTVSLPGGVLEIAWAGFDAPLYMTGPAAHVFEG 1214


>gi|160937939|ref|ZP_02085297.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439165|gb|EDP16919.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC
           BAA-613]
          Length = 280

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 24/294 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M++ M +F KM+G GN  + +D       +    AI           D ++LI   + A 
Sbjct: 1   METDM-EFTKMQGTGNDYVYVDCFKETVRDPAKTAIYVSDRHFGIGSDGLILICPSRTA- 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGS 115
            D  + + N DGS+   CGNG+RCV +++         +++ T ET+ GI   +   +  
Sbjct: 59  -DCRMEMYNADGSQGIMCGNGVRCVGKYVYDHGLVDRDKRTITVETLAGIKTLELEIE-- 115

Query: 116 ISVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                     D K + +     +     R                +++GNPHAI++V+  
Sbjct: 116 ----------DGKAVSVTVDMGEAALTSRLPEDITVDGKEYRFVGINVGNPHAIYYVDQ- 164

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +   DL   G     H  F  + VN     V   + L++R WERG G T ACG+ A ASV
Sbjct: 165 VDCLDLERIGPAFENHERFAPDRVNTEFIHVADRKHLEMRVWERGSGETWACGTGATASV 224

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           +AS  +  T     V + GG L+I +  ++ H+FMTG A + + G +DI    +
Sbjct: 225 MASILMGYTEDEAEVALRGGKLVIRYERESGHLFMTGPAVEVFRGSIDIPEEIY 278


>gi|300726014|ref|ZP_07059473.1| diaminopimelate epimerase [Prevotella bryantii B14]
 gi|299776728|gb|EFI73279.1| diaminopimelate epimerase [Prevotella bryantii B14]
          Length = 287

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 7/287 (2%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLI-HDFQDASV 60
           S+ + F KM+G GN  + ++         S A    S        D ++LI      A  
Sbjct: 2   SNKIRFTKMQGAGNDYIYVNTLAYPIPNPSLASQIWSKYHFKIGSDGLVLIGRPSDPAKA 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118
           D  + I N DGSE   CGN  RC+ ++L  +    ++    ET+ G+ + K +   +   
Sbjct: 62  DYSMHIYNADGSEAMMCGNASRCIGKYLYEKGLTFQEEIRLETLSGVKILKLHLIDNKET 121

Query: 119 DMGEPI-LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
              E   +   ++                       + N   VSMGNPH + FV +D+  
Sbjct: 122 GKTEVESVTVDMLEPQLEEKAQYNAEVGKNIQIEDRIFNGTFVSMGNPHYVIFV-NDIDT 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            D+A +G+ L  HP F +  N+  A V +   +  R WERG G+T ACG+ ACA+ VA+ 
Sbjct: 181 IDIARYGSKLEVHPAFPQRCNIEFAEVRANGEIRTRVWERGSGITLACGTGACATAVAAA 240

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
              +  R   + M GG L IEW  +NNH++MTG A   +EG++++  
Sbjct: 241 LTGRAERKSKIVMDGGTLEIEWKANNNHIYMTGPAAFAFEGEIELPE 287


>gi|25008346|sp|Q8K901|DAPF_BUCAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21623478|gb|AAM68104.1| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 284

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +VI+       +T   I  LS  +    FDQ++LI    +   D   
Sbjct: 11  IYFSKMHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RCV  FL  +  + ++     T +  +  K   D +I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    + I +++       + F +  +N        +VS+GNPH +  VE  + +  +  
Sbjct: 131 PSFKLEEISISKKI---VLNNFSVKLINKNL--KCSLVSIGNPHCVIKVE-SINNAPVKK 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL K+ +F +G+N+   +V +   + LR +ER VG T +CGS ACA+V      +  
Sbjct: 185 IGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
              V V +LGG L+I+W   N  ++M G A   ++G + I
Sbjct: 245 CDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 284


>gi|154151970|ref|YP_001405588.1| diaminopimelate epimerase [Candidatus Methanoregula boonei 6A8]
 gi|154000522|gb|ABS56945.1| Diaminopimelate epimerase [Methanoregula boonei 6A8]
          Length = 275

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 21/283 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  ++ID               A            D I+ +        D
Sbjct: 3   IPFVKLHGNGNDFVLIDEYAQMIIPDDLKGQFAALYCERRFGIGADGILFLAKPTRK-AD 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDG---SIS 117
             +RI+  D SE + CGNG+RC+ ++       +++ T +T  G L      +G   +++
Sbjct: 62  IRMRILQPDESEAEMCGNGIRCLAKYAYDMGYIQETCTVQTEAGDLEVSVRYEGEECTVT 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           + MGEP    K IP     +              +       V+ G PHA+   + DL  
Sbjct: 122 IGMGEPKFKRKDIPATGKGEY----------HEQIGGFEVHAVNTGVPHAVILTD-DLGS 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            DLA+    +  HP F  G N++  + T  +S+ +RT+ERGV   T +CG+ A AS    
Sbjct: 171 IDLAAVAPQIRNHPTFPHGANVNFVQKTGEDSIRVRTFERGVEDETLSCGTGATASAAVV 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L   N  V V+  GG L I +       M G A   + G +
Sbjct: 231 HHLGYMNGPVQVETKGGPLTIHFDPEGKARMEGPAVAVFSGLI 273


>gi|118444379|ref|YP_878028.1| diaminopimelate epimerase [Clostridium novyi NT]
 gi|118134835|gb|ABK61879.1| diaminopimelate epimerase [Clostridium novyi NT]
          Length = 274

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 20/285 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +DF KM+G GN  +VI+          D  A            D I+L+     A  D  
Sbjct: 1   MDFTKMQGTGNDFVVIEDLYDDFKGKEDSLAKVLCHRRFGIGADGILLVRKSSVA--DIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV----AKENRDGSI--- 116
           + IIN DGS    CGNG+RC  R++  +   K    E   G  +       N +  +   
Sbjct: 59  MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKPIIEIETGDGIKIAHLTINNEDEVLGI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +++MG    +   IPL+ +   +++D      +N+   +   +        +     D+ 
Sbjct: 119 TINMGNFSFEPVDIPLSVNEKIINKDV----NINNKEYKITSMKLGVPHTVVMCNIHDVD 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             +    G  + K+ +FSEG N++   +   +++ ++TWERG G T ACG+ +CASVVAS
Sbjct: 175 VVE----GKYIEKYKLFSEGTNVNFCEIEDNDTIRVKTWERGAGPTLACGTGSCASVVAS 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L        V + GG L IE  D+  VFMTG A+  +EGK+++
Sbjct: 231 NTLGYVGNKCKVIVPGGELFIELKDD-VVFMTGPAEIVFEGKINL 274


>gi|212640228|ref|YP_002316748.1| diaminopimelate epimerase [Anoxybacillus flavithermus WK1]
 gi|212561708|gb|ACJ34763.1| Diaminopimelate epimerase [Anoxybacillus flavithermus WK1]
          Length = 289

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 19/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M       + ++  A    +       D ++LI     A V   +
Sbjct: 11  FTKMHGLGNSYIYVNMFKECLTEEELSYIAKRVSNVHTGIGSDGLILICPSDVAPV--KM 68

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE----NRDGSISV 118
           RI N DGSE ++CGNG+RCV ++       + + F  ET+ G++ A+      +  S+ +
Sbjct: 69  RIFNSDGSEGKNCGNGLRCVAKYAYEHGIVQEEQFLIETLSGLVEARVFVEDGKVNSVEI 128

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +MG+P L    IP+  +  D +  +        +        VSMGNPHA+F+V+  +  
Sbjct: 129 NMGKPRLSRVEIPMIGKEDDIVVSEPIEFEGHTYYMTG----VSMGNPHAVFYVDQ-IED 183

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G ++ K   F EG+N+    V +   L  R WERG G+T ACG+ ACA+VVAS 
Sbjct: 184 APVTSLGPIVEKDERFPEGINVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 243

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              KT  N    V + GG L I W +N  V M G A+    G 
Sbjct: 244 LNGKTKRNEETVVHLAGGDLYITWKENGDVLMRGAAETICTGV 286


>gi|58428214|gb|AAW77251.1| Diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 346

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 68  RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 127

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      +   F     +     +    G  +V
Sbjct: 128 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 187

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  D   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 188 AMGMPQFDPPQIPLAG----FAHARDEYALPVHGDTVRFGAVSMGNPHAVVEVGR-VDAA 242

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 243 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 302

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  D+  V M+G A   ++G+ +
Sbjct: 303 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWN 345


>gi|8247916|sp|O27389|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 286

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 11/284 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60
           M+ F+KM G+GN  +VID        ++   + +  + T   +   D ++ +        
Sbjct: 1   MILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SGEG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISV 118
           D   RI N DGSE + CGNG+RC  +F+      +    E     GI   +   +    V
Sbjct: 60  DIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGAVV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                +            D  + +                 +S+GNPHAI FV+ D    
Sbjct: 120 SSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLTALSVGNPHAIIFVD-DAEGV 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G  +  HP+F E +N+    V S   + + TWERG G T ACG+ A ASV+A   
Sbjct: 179 DLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASVIAGVK 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           L K + +V V + GG L I+ + +      +M G+A   ++G L
Sbjct: 239 LEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 282


>gi|25294019|pir||F84998 diaminopimelate epimerase (EC 5.1.1.7) [imported] - Buchnera sp.
           (strain APS)
 gi|10039244|dbj|BAB13278.1| diaminopimelate epimerase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 305

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 32  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 92  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 152 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SVKNAPVNI 205

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 206 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305


>gi|239828210|ref|YP_002950834.1| diaminopimelate epimerase [Geobacillus sp. WCH70]
 gi|259595057|sp|C5D729|DAPF_GEOSW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|239808503|gb|ACS25568.1| diaminopimelate epimerase [Geobacillus sp. WCH70]
          Length = 284

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 95/283 (33%), Positives = 148/283 (52%), Gaps = 19/283 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++S A+   + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEETIPESLLSSLAVKVSNVNTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SISV 118
           RI N DGSE ++CGNG+RCV ++       K  +F  ET+ G++ A+   +     ++++
Sbjct: 64  RIFNSDGSEGKNCGNGLRCVAKYAYEHGMVKDRSFFIETLSGLVKAEVTVENGAVTNVTI 123

Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+P L    IP+     +++  + F +    +        VSMGNPH IF+V+ D+  
Sbjct: 124 DMGKPRLKRSEIPMIGLDAERVVAEPFEVDGKQYEI----TAVSMGNPHVIFYVD-DITT 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+VVAS 
Sbjct: 179 APVTTLGPIVEKDERFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              KT  N+   V + GG L+I W D  +V MTG A+    G 
Sbjct: 239 LNGKTARNKETVVHLAGGDLIITWTDEGNVRMTGPAETICTGV 281


>gi|311086311|gb|ADP66393.1| diaminopimelate epimerase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086885|gb|ADP66966.1| diaminopimelate epimerase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087475|gb|ADP67555.1| diaminopimelate epimerase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 305

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 32  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 92  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 152 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SIKNAPVNI 205

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            GN + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 206 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305


>gi|167761628|ref|ZP_02433755.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704]
 gi|167660771|gb|EDS04901.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704]
          Length = 285

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 15/284 (5%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
             G+GN  +V D       +TS+ +  +   +     D ++            ++++ N 
Sbjct: 8   YHGLGNDYVVFDPNKNELELTSENVRMICDRNEGLGSDGVL--EGPILKEDGMYVKVWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPIL 125
           DGSE ++ GNG+R   ++L      +   F+   G    +          + V MG+   
Sbjct: 66  DGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEITFLNEDGSRLRVSMGKLSF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+
Sbjct: 126 WSDDIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F + +N  I +V   E + +  +ERG G T A G+ ACA+   +  L  TN  
Sbjct: 181 YAELARYFPKRINTQIMKVIDKEHVAIEIYERGAGYTLASGTGACAAAGVAYKLGMTNNK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           V V+M GG L +E  ++ +VFMTG+     +  L   + ++++K
Sbjct: 241 VIVQMPGGELQVEIEEDWNVFMTGDVFYVAKITL---SNEFVEK 281


>gi|297528903|ref|YP_003670178.1| diaminopimelate epimerase [Geobacillus sp. C56-T3]
 gi|297252155|gb|ADI25601.1| diaminopimelate epimerase [Geobacillus sp. C56-T3]
          Length = 290

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 98/292 (33%), Positives = 145/292 (49%), Gaps = 25/292 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDF 55
           M+S    F KM G+GN  + +D+    + +  + + A++            D ++LI   
Sbjct: 1   MRSF--SFTKMHGLGNSYIYVDLF--RETLPEEELPAIARSVADVHTGIGSDGLILICPS 56

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRD 113
           + A     +RI N DGSE ++CGNG+RCV ++       +  TF  ET+ G++ A+    
Sbjct: 57  EKAP--LKMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVA 114

Query: 114 G----SISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                S++VDMGEP L+   IP+     +++  + F I    +        VSMGNPH I
Sbjct: 115 DGEVTSVTVDMGEPRLERSAIPMVGPKAERVVAEPFAIAGGEYEM----TAVSMGNPHVI 170

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           F+V+ D+    +   G L+ K   F EGVN+    V +   L  R WERG G+T ACG+ 
Sbjct: 171 FYVD-DIQKAPVTMLGPLVEKDSRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTG 229

Query: 229 ACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           ACA+VVAS    KT       V + GG L I W  +  V MTG A+    G 
Sbjct: 230 ACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGV 281


>gi|229175640|ref|ZP_04303148.1| Diaminopimelate epimerase [Bacillus cereus MM3]
 gi|228607781|gb|EEK65095.1| Diaminopimelate epimerase [Bacillus cereus MM3]
          Length = 288

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 23/287 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +R+ N DGSE +SCGNG+RCV ++      ++   F  ET+ GI+ A+   +       
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFKIETLAGIVTAEVTVEEGKVTLA 121

Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +DMG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+
Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA
Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFVEILNDAEMNFRVWERGSGVTQACGTGACAAVVA 236

Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           S    K  R   + V + GG L+I W +  +V M G A+    G  +
Sbjct: 237 SILNGKMERGKEIIVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|302385678|ref|YP_003821500.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
 gi|302196306|gb|ADL03877.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
          Length = 270

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 19/281 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + I+               +S        D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYINCFEEIVETPEKLAKKVSDRHFGIGSDGLILICPSETA--DCRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R+ N DGSE Q CGNG+RCV +++      ++  F  ET  GI   K + +   +V +  
Sbjct: 59  RMFNADGSESQMCGNGIRCVGKYVYDHGLVEKTEFNVETGAGIKHLKVSTEDGKAVRITV 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +                 +   +  + + F+     +SMGNPHAI++++  +   DL +
Sbjct: 119 DMGVP-------EVTSQVPEPIWVNGMEYEFIG----ISMGNPHAIYYMDF-IDGLDLEA 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     H  F E  N    +V +   + +R WERG G T ACG+ A AS VAS    +T
Sbjct: 167 IGPAFEHHERFPERTNSEFIQVVNRNYIRMRVWERGSGETWACGTGAAASAVASALSGRT 226

Query: 243 NRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDI 281
              V V++ GG L I W    + HVFMTG A + +EG+ DI
Sbjct: 227 AHMVEVELKGGNLTIHWDREGSGHVFMTGPAVEVFEGEFDI 267


>gi|71274750|ref|ZP_00651038.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon]
 gi|170730008|ref|YP_001775441.1| diaminopimelate epimerase [Xylella fastidiosa M12]
 gi|229813256|sp|B0U6U5|DAPF_XYLFM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71164482|gb|EAO14196.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon]
 gi|167964801|gb|ACA11811.1| Diaminopimelate epimerase [Xylella fastidiosa M12]
          Length = 284

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 126/278 (45%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R       +  +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVVAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +L        + F  ++       +       +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   +        +       +     VSMGNPHA+  V+  +    +  
Sbjct: 130 PVFEPERIPLSGFPNACAEYVLSLQG----EVLRCGAVSMGNPHAVVEVDL-IDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            R V V + GG L ++W      V ++G A+  ++G  
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 282


>gi|196228840|ref|ZP_03127706.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428]
 gi|196227121|gb|EDY21625.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428]
          Length = 267

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 28/283 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F KM G GN  +++D R     +    I  L         D ++++   Q    +  
Sbjct: 1   MLTFTKMNGAGNDFVMLDNRDGKLTLDKAQIARLCDRHRGVGADGVLVVEPAQS-GANFR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +R  N DG E + CGNG RC  RF      +    +FET+ G + A+   +         
Sbjct: 60  MRYYNADGGEAEMCGNGARCFGRFAQRVSGQAGDISFETMAGKITAQFIDNNV------- 112

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  I ++        +    G      +     V+ G PHA+ FV+ DL   D+  
Sbjct: 113 ------RIQMSEPHSLRLNESLDSGG----EVLTVHSVNTGVPHAVVFVD-DLEQVDVRR 161

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           FG  L  H  F  +G N +  +    +++ +RT+ERGV   T ACG+   A  +    L 
Sbjct: 162 FGAGLRYHSHFAPKGTNANFVQQLGPQTIAIRTYERGVEDETLACGTGMVACALIFHELT 221

Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGK 278
                V+VK+ GG  L I +  +  V+    +TG A   ++G+
Sbjct: 222 GAASPVAVKVRGGETLEIAFRQDGKVYRDVTLTGPADFVFDGQ 264


>gi|289664014|ref|ZP_06485595.1| diaminopimelate epimerase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 284

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 87/283 (30%), Positives = 123/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I NCDGS  + CGNG RCV  +L      + + F  ++       +    G  +V
Sbjct: 66  VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGGRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGIPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVIEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F   VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWN 283


>gi|219682484|ref|YP_002468868.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254767094|sp|B8D8A8|DAPF_BUCAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219622217|gb|ACL30373.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 284

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 11  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 131 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SIKNAPVNI 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            GN + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 185 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|148643432|ref|YP_001273945.1| diaminopimelate epimerase [Methanobrevibacter smithii ATCC 35061]
 gi|148552449|gb|ABQ87577.1| diaminopimelate epimerase, DapF [Methanobrevibacter smithii ATCC
           35061]
          Length = 286

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTHFDQIMLIHDFQDASVD 61
           + F+KM GIGN   +I+         +D   A             D ++ +     A  D
Sbjct: 6   LKFSKMHGIGNDFPIINESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--D 63

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS---- 115
              R+ N DGSE + CGNG+RC   F+  +   K++  T ET  GI   +   +      
Sbjct: 64  IGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVL 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             VDMG        IP+A   D+       +         N   +S+GNPHAI FV+ ++
Sbjct: 124 FKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLD----TTFNTTAISVGNPHAIIFVD-NI 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  +G  +  H +F E +N+    V S     + TWERG G+T ACG+ A ++ ++
Sbjct: 179 DEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAIS 238

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
              L   +  V + + GG L    ++       FM G A+  ++G++
Sbjct: 239 GFKLGLFDSEVLLHLPGGDLKFNVYEKEEELGAFMEGPAQLVFDGEI 285


>gi|225619856|ref|YP_002721113.1| diaminopimelate epimerase [Brachyspira hyodysenteriae WA1]
 gi|259595051|sp|C0QZX1|DAPF_BRAHW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225214675|gb|ACN83409.1| Diaminopimelate epimerase [Brachyspira hyodysenteriae WA1]
          Length = 279

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  + I+       +  DAI           +   D I+LI     A  D
Sbjct: 3   LSFTKMHGTGNDYIYINCFKEKFTV-EDAIKYSPILSHRHYSIGADGIILIMPSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGS 115
             +R+ N DGSE + CGNG+RCV ++   R   K      ET+RGIL A    K+    +
Sbjct: 60  VQMRMFNYDGSESEMCGNGIRCVAKYAYDRGISKNNPMKIETLRGILEAELFLKDEEVDT 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + + M  PIL+   IP       +  +        + F      VSMGNPHA+ FV +DL
Sbjct: 120 VEISMSSPILEGLKIPTTIDKTPIINEPIIFNDKTYYF----TAVSMGNPHAVIFV-NDL 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
           ++ D++S G+ +  + +F    N+    + +   +  RTWERG G T ACG+ A A  VA
Sbjct: 175 HNMDISSIGSYMENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGASAVCVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +T+  +   +LGG L++ + +N++VFM GEA+  +EG + +
Sbjct: 235 GFISGRTDNIILNHLLGGDLILRY-ENDNVFMKGEARYCFEGTITL 279


>gi|28952060|ref|NP_240392.2| diaminopimelate epimerase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11131717|sp|P57649|DAPF_BUCAI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
          Length = 284

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 11  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 131 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SVKNAPVNI 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 185 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|325922224|ref|ZP_08184010.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865]
 gi|325547294|gb|EGD18362.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865]
          Length = 283

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 124/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   + +  
Sbjct: 6   RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAALAARLADRHFGVGCDQILTIEAPRSSEA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      +   F  ++       +    G+ +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGDDFVIDSPFTAHRVQRLDAGTYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGVPHFEPTQIPLAG----FAHAREEYALPVHGETVRFGAVSMGNPHAVIEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGGLLQQNAAFPDSVNVGFVQVVEPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVRVSLPGGELRIRWAGDQQEVVMSGPAVFVFDGEWN 283


>gi|289667448|ref|ZP_06488523.1| diaminopimelate epimerase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 284

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118
            A   I NCDGS  + CGNG RCV  +L      + + F  ++       +       +V
Sbjct: 66  VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGDRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGIPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVIEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F   VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWN 283


>gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991449|gb|EEC57455.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC
           43243]
          Length = 293

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/292 (30%), Positives = 129/292 (44%), Gaps = 22/292 (7%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  + +D               +S        D ++LI     A  D F+ + N 
Sbjct: 1   MHGAGNDYVYVDCTKTSIENAGAVAKFVSDRHFGIGSDGLILIKPSDKA--DFFMEMYNS 58

Query: 70  DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG------SISVDMG 121
           DGS  Q CGNG+RCV    +      +K    +T+ GI   + N D       S+ V+MG
Sbjct: 59  DGSRAQMCGNGIRCVAKYVYDYRLTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRVNMG 118

Query: 122 EPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFL-----RNPFVVSMGNPHAIFFVED 173
            PIL    IP+    +  + + +D      V+              VSMGNPH + F++D
Sbjct: 119 SPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVVFMDD 178

Query: 174 DLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           D    ++ +   G L   H +F E  N    +V    +L +R WERG G T ACG+  CA
Sbjct: 179 DFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGTGCCA 238

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282
           S+VA+           + +LGG L I W+   N V+M G A   ++G +DI 
Sbjct: 239 SLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDIDIS 290


>gi|323484135|ref|ZP_08089505.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum
           WAL-14163]
 gi|323693220|ref|ZP_08107438.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
 gi|323402577|gb|EGA94905.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum
           WAL-14163]
 gi|323502703|gb|EGB18547.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
          Length = 269

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 117/278 (42%), Gaps = 16/278 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++      ++  S AI           D ++LI   + A  D  +
Sbjct: 1   MKFTKMQGIGNDYVYVNCFEEKVEDPCSMAIAVSDRHFGIGSDGLILIKPSEVA--DCQM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DG+    CGNG+RCV ++                   +   +            +
Sbjct: 59  DMYNLDGTRGAMCGNGVRCVGKYAYDHKIVDKPRISVETASGIKYLDMKVENGKVTAVTV 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---LYHYDLA 181
              K +  +  F++++                   +SMGNPHA+ F ++    +   DL 
Sbjct: 119 DMGKPVQTSELFEELEIK---------GKSYRFIGISMGNPHAVVFEDEFEEPIETLDLE 169

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G     H  F +  N    RV     + +R WERG G T ACG+ ACA  VA+     
Sbjct: 170 KIGPDFENHERFPDRTNTEFIRVIDRGHVKMRVWERGSGETMACGTGACAVAVAAILAGC 229

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
           T+  V V++LGG L I W  + + V+MTG A + + G+
Sbjct: 230 TDDTVEVELLGGTLTIAWDREKDTVYMTGPAVEVFHGE 267


>gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836]
          Length = 279

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++       + ++ AI   + +     D ++LI   +++  D  +
Sbjct: 4   LKFTKMHGAGNDYIYMNGFIQEIEDPSALAIRLSNRNFGIGSDGLVLILPSENS--DFRM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118
           ++ N DGSE + CGN  RCV +++       +K    ET  G+              ++V
Sbjct: 62  QMFNSDGSEAEMCGNASRCVGKYVYDNGLTTKKEIALETKAGVKYITLLEGDEKARKVTV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMGEPILD   IP+    + +      I       +     VSMGNPHA+ F    +   
Sbjct: 122 DMGEPILDPVQIPVKVDKEPVLNFPLDIDGK----IWEISCVSMGNPHAVVFTTG-IKEL 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL   G    KHP+F    N     V   ++L++R WERG G T ACG+ ACA+ VA+  
Sbjct: 177 DLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAAVAAIL 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
               +R +++ ++GG L IEW + NNHV+MTGEA   +EG++
Sbjct: 237 NGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEI 278


>gi|219681929|ref|YP_002468315.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471639|ref|ZP_05635638.1| diaminopimelate epimerase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254767093|sp|B8D8F1|DAPF_BUCA5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|219624772|gb|ACL30927.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 284

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F+KM G+ N  +VI+    +  +TS  I  LS       FDQ++L+        D   
Sbjct: 11  INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N +G+EV+ CGNG RC   FL  +    +K     T +  L  +   +  I V+M E
Sbjct: 71  RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P   +  +    S   +  + F I  +N   + N  +VS+GNPH I  V+  + +  +  
Sbjct: 131 PDFKFYNL---SSLQNVLDNNFSIKLINENLICN--LVSIGNPHCIIKVQ-SIKNAPVNI 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+ + K+P+F EGVN+S   + + + + LR +ER VG T ACGSAACA+V         
Sbjct: 185 IGDNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +  V V++LGG L+I W      ++M G AK  ++G + I
Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284


>gi|190575910|ref|YP_001973755.1| diaminopimelate epimerase [Stenotrophomonas maltophilia K279a]
 gi|190013832|emb|CAQ47470.1| putative diaminopimelate epimerase [Stenotrophomonas maltophilia
           K279a]
          Length = 283

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 121/281 (43%), Gaps = 9/281 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F+KM G GN  +VID+R      T +    L+        DQI+ I   +     
Sbjct: 6   SKALRFSKMHGAGNDFVVIDLRDGTAPPTPELAAQLADRHTGVGCDQILTIEAPRAEGSV 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119
           A  RI N DGS  + CGNG RC+  +L      +   F  ++       +   DG  +V 
Sbjct: 66  ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDRFVIDSPLASHEVEVLGDGQFAVT 125

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   +PL       +     +   +  F      VSMGNPHA+  V   +    
Sbjct: 126 MGVPAFEPANVPLVGFAHAREEYLLPLQGESVRF----AAVSMGNPHAVIEVGL-IDAAP 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G LL +H  F   VN+  A+V       LR  ERGVG T ACGS ACA+ V     
Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPGHARLRVNERGVGETLACGSGACAAAVTLMQR 240

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            +  R   + + GG L I+W  +   V M G     +EG+ 
Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGEW 281


>gi|224370826|ref|YP_002604990.1| DapF [Desulfobacterium autotrophicum HRM2]
 gi|259595052|sp|C0QAP3|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2]
          Length = 283

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 136/288 (47%), Gaps = 19/288 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KMEG+GN  +++D R             A    S           +I      + D
Sbjct: 3   LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGG--DGIIIIIDSETAD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115
              +I N DGSE + CGNGMRC  + +  +    ++ FT ET+ G ++ +     +    
Sbjct: 61  VGFKIFNPDGSEPEMCGNGMRCFAKLVFEQGIVTKQRFTVETLAGTIIPEILLSDTRQVE 120

Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I VDMGEPIL+   IP   +  +   ++  +         +   VSMGNPHA+ FV+ D
Sbjct: 121 AICVDMGEPILEPDRIPFKCNRQRAVNEQIQVKG----ETVSITAVSMGNPHAVIFVD-D 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL + G  +  H +F    N+    V + + L +R WERG G T ACG+ A A +V
Sbjct: 176 VKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASAVLV 235

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A+     T     V + GG L I W   +NH+F TG A   + G++ I
Sbjct: 236 AASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRIKI 283


>gi|147919801|ref|YP_686453.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I]
 gi|121685385|sp|Q0W3B6|DAPF_UNCMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110621849|emb|CAJ37127.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I]
          Length = 280

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 124/289 (42%), Gaps = 24/289 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASV 60
           + + F KM G GN  +VID           A               D ++ +        
Sbjct: 2   TKIKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH--T 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAK---ENRDGS 115
              +RI N DGSE + CGNG+RC V++              ET  GIL  +   E+    
Sbjct: 60  SLHMRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMNPGKDKVETKAGILEVEARIEDGKTL 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + V MG+P+ D K IP A   + +++          L       V+ G PHA+ FV+ D+
Sbjct: 120 VKVSMGKPLFDPKKIPAAGLNNFINKP---------LHGYEVTAVNTGVPHAVIFVD-DV 169

Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233
              DL      +      F +G+N++  +      L +RT+ERGV   T +CG+ + AS 
Sbjct: 170 NAVDLMKVAPEIRYDLKTFPKGINVNFVQREGHN-LRVRTYERGVEGETLSCGTGSVASA 228

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  L  T    +V   GG L I +  +   +M G A+  +EG++D+ 
Sbjct: 229 AVARYLGYTRDETTVYTAGGQLNISFVSD-IAYMEGPAETVYEGEIDVD 276


>gi|225570788|ref|ZP_03779811.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM
           15053]
 gi|225160250|gb|EEG72869.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM
           15053]
          Length = 290

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 17/296 (5%)

Query: 1   MQSSMVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD 57
           M+ + +     +  G+GN  +V D       +T + +  +   +     D ++       
Sbjct: 1   MEVTKMKVVLERYHGLGNDYVVFDPNKNELGLTPENVRMICDRNAGLGSDGVL--EGPVM 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--- 114
                F+++ N DGSE ++ GNG+R   ++L      +   F         +        
Sbjct: 59  KEEGMFVKVWNPDGSESETSGNGVRIFAKYLKDAGYVQKKHFRLFTEHGPVEVAFLNEDG 118

Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + V MG+       IP+     ++  +    G      L     V++GNPH +  +  
Sbjct: 119 SRLRVSMGKLSFYSDDIPVTGERREVINEDMVFG----RTLYPVTCVTIGNPHCVIPMR- 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           ++    +   G+       F   +N  I +V   E++ +  +ERG G T A G+ ACA+ 
Sbjct: 174 EISKPLVCKIGDYAEIARYFPNRINTQIMQVIDKENIAIEIYERGAGYTLASGTGACAAA 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
             +  L  TN  V V M GG L +E  D+ +V+MTG+     +  L   + ++++K
Sbjct: 234 GVAYKLGMTNNKVIVHMPGGELQVEVEDDWNVYMTGDVFYVAKITL---SNEFVEK 286


>gi|182417996|ref|ZP_02949303.1| diaminopimelate epimerase [Clostridium butyricum 5521]
 gi|237668975|ref|ZP_04528959.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378167|gb|EDT75702.1| diaminopimelate epimerase [Clostridium butyricum 5521]
 gi|237657323|gb|EEP54879.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 275

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 127/282 (45%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++      N   S A+           D ++++   Q A   A +
Sbjct: 1   MKFYKMQGAGNDFVFVEDFNNEINDECSLAVKLCDRHYGIGADGLVIVRKSQVAE--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            IIN DGS    CGN +RC  +++          F    G  V       ++ +   + V
Sbjct: 59  IIINADGSRANMCGNAIRCFGKYVFEHNIVNKTEFSVETGDGVKIIEVLLEDEKIKYVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P    + IPL+   D +D +    G            V +G PH I F   D   Y
Sbjct: 119 YMGKPSYRAEDIPLSHGEDFIDSEITCNGK-----TYKATTVLVGVPHTIIFENTD--EY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G  L KH +F+EG N++  ++     + + TWERG G T ACG+   ASVV +  
Sbjct: 172 VVNEDGPSLEKHSLFTEGSNINFVKIIDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231

Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           L   N  + + VK  GG L+IE + ++ V+M G A+  +EG 
Sbjct: 232 LGLVNKEKEIYVKAPGGELIIEVNGDD-VYMKGPAEVVFEGN 272


>gi|222087520|ref|YP_002546057.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84]
 gi|254767086|sp|B9JCL3|DAPF_AGRRK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221724968|gb|ACM28124.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84]
          Length = 301

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 148/298 (49%), Positives = 196/298 (65%), Gaps = 5/298 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SNTVEFARMNGLGNKILVVDMRGRKDVVTAAAAIALNADPATEFDQIMAIHDPKAEGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I I+N DG++ Q+CGNG RCVV+ L +   +K FTF+T+ GIL A E+ DG+ISVDMG 
Sbjct: 62  WIDILNSDGTKAQACGNGTRCVVQALAAETGKKVFTFQTVAGILNAVEHEDGTISVDMGR 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ DW  IPLA  F    R    IGP+++  L +P V+SMGNPHAIF+V+ D   YDLA 
Sbjct: 122 PVFDWDKIPLAEEFADTRRIELQIGPIDNPVLHSPSVMSMGNPHAIFWVDKDPMSYDLAR 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           FG LL  HPMF E  N+++A+V S   L  RTWERG GLT ACGSAAC++ V++    +T
Sbjct: 182 FGPLLENHPMFPERANITLAQVLSPTLLRTRTWERGAGLTLACGSAACSAAVSAARTGRT 241

Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            R V++ +      G L IEW + ++HV MTG A+ EW G +D  TG + +  E    
Sbjct: 242 GRKVTIDVASAPASGQLTIEWRENDDHVVMTGPAEWEWSGVVDPVTGSFTRAQEQGAQ 299


>gi|15838082|ref|NP_298770.1| diaminopimelate epimerase [Xylella fastidiosa 9a5c]
 gi|21362498|sp|Q9PD98|DAPF_XYLFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|9106505|gb|AAF84290.1|AE003977_13 diaminopimelate epimerase [Xylella fastidiosa 9a5c]
          Length = 284

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 9/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D+R          +  L+        DQ++ I   +   V A  
Sbjct: 10  LHFTKMQGAGNDFVVLDLRDGTPPPDVALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGS  Q CGNG RCV  +      +  + F  ++     + +       +V+MG 
Sbjct: 70  RIWNADGSAAQQCGNGARCVAAWLVRDGSVADEHFLIDSPVQAHLVRCIGKDEYAVEMGL 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P+ + + IPL+   +        +       +     VSMGNPHA+  V+  +    +  
Sbjct: 130 PVFEPERIPLSGFPNACGEYVLSLQG----EVLRCGAVSMGNPHAVVEVDL-IDVAPVER 184

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G+LL +H  F E VN+   +V     + LR +ERG G T ACGS ACA+ V      + 
Sbjct: 185 IGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
            R V V + GG L ++W      V ++G AK  ++G  
Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDGVW 282


>gi|190894039|ref|YP_001984333.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT
           652]
 gi|190699700|gb|ACE93783.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT
           652]
          Length = 283

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 13/280 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS----VD 61
            F KM G+ N  +++D R    +   + I  +         +Q++ I    D        
Sbjct: 6   PFIKMHGLHNYFVIVDRRDGSKSFDREDIVRICDCHTGPGGEQLLTIEPASDKGRNVGAY 65

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +RI N DG EV +CGN  RC+   L           ET  G+L  +      ISV  G
Sbjct: 66  AAMRIFNIDGKEVGACGNATRCIAYLLLEETGEDEVQIETKAGVLHCRRAGPMQISVTFG 125

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              +DW+ IPL+R  D +        PV    L++   + +GNPHA+FFV+  L  +D+A
Sbjct: 126 PISMDWRRIPLSREVDTL------HLPVQSGPLKDGLALDIGNPHAVFFVDC-LELFDMA 178

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
               ++   P+F EG+N+  A V    +L L  WER   LT ACG+ AC +  A+     
Sbjct: 179 HHAPVVQNDPLFPEGINVDAAEVLDGRTLRLAVWERPGILTKACGTGACVAAYAALKRGL 238

Query: 242 -TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            T+  ++V +  G L IE  + +   MTG       G ++
Sbjct: 239 VTSTRIAVHLPAGLLKIEIANGDMAVMTGPVAFCCHGFIE 278


>gi|188996119|ref|YP_001930370.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931186|gb|ACD65816.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 286

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 16/281 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +V+D       +T   I  +         D I++   +     D  +RI
Sbjct: 7   FVKSHGLGNDYIVLDSDKIDFKLTQGLIKKICDVHYGIGSDGILV--KYDSDVADFKLRI 64

Query: 67  INCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDG------SISV 118
            N DGSE +  GNG+R   +  +       + FT ET  GI+ AK            I+V
Sbjct: 65  FNPDGSEAEKSGNGLRIFCKFLYDYGYTDNEEFTVETKGGIVKAKIEEKNKFGKAKIITV 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ I + K IP+    ++   ++  +G            VS+GNPH +   +++L   
Sbjct: 125 DMGKAIFNAKQIPINTDKEEFISEKITVGDKEFEVN----CVSVGNPHCVII-KENLDEE 179

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++  +G ++  HP+F   +N+   +  S     +  WERG G T A GS++C        
Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               +R + +KM+GG L I   ++ ++ MTGE ++   G +
Sbjct: 240 KGLADREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYI 280


>gi|168186174|ref|ZP_02620809.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund]
 gi|169295648|gb|EDS77781.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund]
          Length = 274

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 20/285 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +DF KM+G GN  +VI+          +  A N          D I+L+     A  D  
Sbjct: 1   MDFTKMQGTGNDFVVIEDLYDDFKGKEETLAKNLCHRKFGIGADGILLVRKSSVA--DIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV----AKENRDGSI--- 116
           + IIN DGS    CGNG+RC  R++  +   K    E   G  +       N D  +   
Sbjct: 59  MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKSIIEIETGDGIKIAYLTINNDDEVLGI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +++MG      K IPL+ + +K+     +I    +        V       +    DD+ 
Sbjct: 119 TINMGNFSFQPKDIPLSIN-EKIINKDININSTEYKITSMKLGV---PHTIVMCNIDDVD 174

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                + G  + KH +FSEG N++   V    ++ ++TWERG G T ACG+ +CASVVAS
Sbjct: 175 V----TEGKYIEKHELFSEGTNVNFCEVKDNNTISVKTWERGAGPTLACGTGSCASVVAS 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L        V + GG L IE   +  VFMTG A+  +EGK++I
Sbjct: 231 NTLGYIGNRCKVIVPGGELFIEVKGD-IVFMTGPAEIVFEGKINI 274


>gi|254249624|ref|ZP_04942944.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
 gi|124876125|gb|EAY66115.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
          Length = 295

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG   +    +  D +  +        F+Q+ +I        
Sbjct: 29  IAFQKMNANGDDFVIVDLRGQEHDRAHPVDDDLVRRMGDRHRGIGFNQLAVI--SDGDDA 86

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 87  AARVAFRNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 146

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P LDW+ +P++ + D +                 P   SMGNPH  FFV+ D+   D+
Sbjct: 147 GAPRLDWQDVPVSEAVDTLVL----------PLPGAPAACSMGNPHCTFFVD-DVAALDI 195

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 196 EALGPAIEAHPLFPLKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 255

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG + ++W     VF++G     + G  
Sbjct: 256 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFGGVW 294


>gi|84625424|ref|YP_452796.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898962|ref|YP_202636.2| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|123520881|sp|Q2NYV5|DAPF_XANOM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|84369364|dbj|BAE70522.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 284

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60
           +S  + F KM G GN  +V+D+R       +     L+        DQI+ I   +    
Sbjct: 6   RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118
            A   I N DGS  + CGNG RCV  +L      +   F     +     +    G  +V
Sbjct: 66  VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  D   IPLA         R       H        VSMGNPHA+  V   +   
Sbjct: 126 AMGMPQFDPPQIPLAG----FAHARDEYALPVHGDTVRFGAVSMGNPHAVVEVGR-VDAA 180

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G LL ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V    
Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240

Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             +  R V V + GG L I W  D+  V M+G A   ++G+ +
Sbjct: 241 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWN 283


>gi|281422920|ref|ZP_06253919.1| diaminopimelate epimerase [Prevotella copri DSM 18205]
 gi|281403012|gb|EFB33692.1| diaminopimelate epimerase [Prevotella copri DSM 18205]
          Length = 281

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAF 63
           V F KM+G GN  + +D +     +    AI   +       D ++LI    D    D  
Sbjct: 7   VHFTKMQGAGNDYIYVDTQQYDIPDPEKAAIAWSAYHTGIGSDGLVLIGKPHDGRRADYS 66

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMG 121
           +RI N DGSE   CGN  RC+ ++L  +   +  T   ET+ GI + K +   +  V   
Sbjct: 67  MRIFNADGSEAMMCGNASRCIGKYLYEKGLTRKDTIRLETLSGIKILKLHLQDNKEVVKS 126

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +       L    +  ++                  V MGNPH + FV+ D+   D+A
Sbjct: 127 VTVDM-----LEPKLENPEQFIGPSVLEADGRKFEGTYVCMGNPHFVTFVD-DIDTIDIA 180

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            +G +L +   F +  N+  A+VT  + +  R WERG G+T ACG+ ACA+ VA+   ++
Sbjct: 181 HYGKILERDKAFPQRCNIEFAQVTDTDIIRTRVWERGSGITMACGTGACATAVAAALTNR 240

Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           T R  S+ M GG L IE+ + ++HV+MTG A   +EG++++
Sbjct: 241 TGRKSSIVMDGGTLEIEYSEADDHVYMTGPAAFAFEGEIEL 281


>gi|299534479|ref|ZP_07047812.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1]
 gi|298730107|gb|EFI70649.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1]
          Length = 284

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 143/286 (50%), Gaps = 18/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM GIGN  + +D+       D     A    +       D +++I   + A  D 
Sbjct: 3   IAFTKMHGIGNSYIYLDLFQHNYKEDIFCELAQKMANVHTGIGSDGLIIIQPSKIA--DC 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGIL----VAKENRDGSI 116
            +R+ N DGSE  +CGNG+RCV +++  R   +    T ET  GI+    V ++NR   +
Sbjct: 61  GMRVFNKDGSEGTNCGNGLRCVAKYVFERHIVRQELITIETKSGIMLAQVVVQDNRVIEV 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDMG+P+L  K IP+  + +++  +     P   L +     + +GNP+A+FFV   + 
Sbjct: 121 IVDMGKPLLLRKDIPMLGNPNELVINEIFPLPQQSLLV---TALFLGNPNAVFFVNA-IE 176

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L + G++      F    N+    +   ++L    WERG G+T ACG+ ACA+VVA+
Sbjct: 177 QAPLRTLGDIA-NDIRFPYRCNVEFVEIVHEKALKCCVWERGSGITEACGTGACAAVVAA 235

Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                      + V++ GG L+I W DN+H++M G A+   +G  +
Sbjct: 236 ILNGFCQKGEEIVVQLSGGDLVIRWADNDHIWMRGPAEFIADGIYE 281


>gi|323137808|ref|ZP_08072883.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242]
 gi|322396811|gb|EFX99337.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242]
          Length = 286

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/266 (39%), Positives = 144/266 (54%), Gaps = 5/266 (1%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN+ILV+D+RG    +      A++      FDQ+M +HD ++   DAF+RI N D
Sbjct: 13  MNGAGNEILVLDLRGLDHVLAPQEARAIAAAPGLRFDQLMALHDPREKGDDAFMRIYNVD 72

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS   +CGNG RCV   L    K +     T    +  +   +   +VDMG P LDW+ I
Sbjct: 73  GSLSGACGNGARCVAYALARDGKER-LRLATDAARIETRREAETVFTVDMGRPRLDWREI 131

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           PL+R  D        + P           VSMGNPHA+FFV  D     L + G  L  H
Sbjct: 132 PLSREADTR---TVALEPPVAGAPTQFSAVSMGNPHAVFFV-PDALATPLETLGPKLEHH 187

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F +  N+S A++ +   + LR WERG G T ACGSAACA++VA+     T R   V++
Sbjct: 188 PLFPQRANISFAQIVARYDILLRVWERGTGATKACGSAACATLVAAARAGFTERRARVRL 247

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWE 276
            GG L IEW D++HV MTG  + E+E
Sbjct: 248 PGGDLHIEWRDDDHVMMTGPVEFEFE 273


>gi|118366209|ref|XP_001016323.1| diaminopimelate epimerase family protein [Tetrahymena thermophila]
 gi|89298090|gb|EAR96078.1| diaminopimelate epimerase family protein [Tetrahymena thermophila
           SB210]
          Length = 310

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 32/306 (10%)

Query: 5   MV-DFAKMEGIGNKILVIDMR-------GCHDNITSDAINALSTDDNTHFDQIMLIHDFQ 56
           M+  F K  G+GN  ++ID R       G  D  +               D +M + +  
Sbjct: 1   MILHFDKFHGLGNDFIIIDNRQNLLNTCGNPDEFSKIIAKLCDRHLGIGADGVMFVENES 60

Query: 57  DAS------VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV 107
           +         D   +I N DG E Q CGNG+RC  R++  +     +K     T  G+L 
Sbjct: 61  EKDKQDGIQADIRYKIFNADGYESQICGNGLRCFTRYILEKKIIQNKKIVQIRTNIGVLE 120

Query: 108 AKENRDGSISVDMGEPILDWKLIP------------LARSFDKMDRDRFHIGPVNHLFLR 155
            +E   G    ++G+   +   IP            + +                     
Sbjct: 121 CEELSLGLYRTNIGKATAEISKIPANPFNSDAESVVINQPLKINQNLHQQNLSHLSEETH 180

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRT 214
               V++GNPH + +V+ D+   ++   G  L     +F + VN+   ++    +L +R 
Sbjct: 181 YVTFVNVGNPHCVIYVD-DVETAEVERIGKTLQSRKDIFPQSVNVEFIQILDENTLKMRV 239

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKK 273
           +ERG G T ACG+ ACASV A     K + +  V + GG L I  + ++  + + G A K
Sbjct: 240 YERGCGETMACGTGACASVFAGILNKKNSPSSKVLLRGGELQINVNQEDYSLQVIGPAAK 299

Query: 274 EWEGKL 279
            +EG +
Sbjct: 300 VFEGSI 305


>gi|284047714|ref|YP_003398053.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731]
 gi|283951935|gb|ADB46738.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731]
          Length = 296

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 124/281 (44%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D               +S        D ++ I     A  D  +
Sbjct: 3   MKFTKMHGCGNDYVYVDCMDRMLPNPGKISEFVSRRRFGIGSDGLICICPSDKA--DFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSISV 118
           R+ N D SE + CGNG RC+ +++  +   ++ + T ET+ G     +  ++ +     V
Sbjct: 61  RMFNADASEGKMCGNGSRCIAKYVYDKGLTRKDTITLETLGGIKTIHMTVEQGKVVLAEV 120

Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           DMG+ ++    +P+    +  +D+     GP    F      VSMGNPH + FVE D+  
Sbjct: 121 DMGQAVVRTADVPMDWPEETCVDQPVVFAGPDGKGFTVRGTAVSMGNPHFVTFVE-DVET 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + + G ++   P+F E  N+   ++     +  R WERG G T ACG+ ACA      
Sbjct: 180 APVEAVGRIIETSPVFPERTNVEFVQIVDENHVKFRVWERGSGETWACGTGACAVGYTCV 239

Query: 238 CLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
            L K  +    + V+  GG L +   + + + + G A   +
Sbjct: 240 TLGKAGKRGEFLKVEAKGGMLQVRTGEGDAMTLKGPATTVY 280


>gi|258511860|ref|YP_003185294.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478586|gb|ACV58905.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 278

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 125/278 (44%), Gaps = 8/278 (2%)

Query: 6   VDFAKMEGIGNKILVID-MRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM  +GN  + +D  R     D++ S A            D ++L+     A  D 
Sbjct: 1   MQFFKMHALGNNYVFVDTARTTLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DGSE +SCGNG+RCV R+   R    +  F       V        +   +  
Sbjct: 59  GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVEGRVRL 118

Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDL 180
             +D         +      DR     V     R    +VSMGNPH +  V+  +   D+
Sbjct: 119 VTIDMGEARFGTEAVPYRGADRGEDVRVEAGGARYTGTLVSMGNPHFVTLVDR-VDDVDV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++  HP F E VN+    V + + +D R +ERG G+T ACG+ ACASV A     
Sbjct: 178 ERVGRVIESHPDFPERVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAALAKKG 237

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                V+V +LGG L IE  D+ HV+MTGEA    EG 
Sbjct: 238 LVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGT 275


>gi|83944909|ref|ZP_00957275.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633]
 gi|83851691|gb|EAP89546.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633]
          Length = 268

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 94/274 (34%), Positives = 135/274 (49%), Gaps = 10/274 (3%)

Query: 11  MEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M G GN  +V+D R            I AL       FDQ++++    DA  D  +R+ N
Sbjct: 1   MNGAGNAFIVLDRRDASGPAAYGESGIAALLDVH--PFDQLIVLDPSSDADAD--LRVWN 56

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DG EV +CGNG R     L     +   +F +  G + A+   DG+  VD+G   LDW+
Sbjct: 57  RDGGEVGACGNGTRAAAWLLFEDGAKPQLSFTSSGGPMRAQRLSDGAAEVDLGPARLDWR 116

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL+   D M  D     P +   L  P  VSMGNPH +F V+ D+    LA  G  + 
Sbjct: 117 DIPLSLPMDTMRLDFGVNLP-DGGRLEGPGAVSMGNPHVVFAVD-DVLALPLAEIGPCIE 174

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
             P+F + VN   A+V   + + L+ +ERG GLT ACG+ ACA++VA       NR   +
Sbjct: 175 HDPLFPDRVNAGFAQVRDRDDIRLKVFERGAGLTLACGTGACAALVALHRQGLVNREAVI 234

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  GG L + W    HV ++G      E +LD++
Sbjct: 235 EADGGKLPVRWDTEGHVHLSGPVVL--ERELDLR 266


>gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 284

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 129/301 (42%), Gaps = 44/301 (14%)

Query: 6   VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD----- 57
           ++F+K  G+GN  ++++               I           D ++++          
Sbjct: 1   MNFSKWTGLGNDFVLLEPGESLDFSSGFEQRIIKLCDRRFGIGADGVVVVTPMDGDGCLV 60

Query: 58  --------------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFT 98
                           VD  +RI N DGSE   CGN  RCV +++ +R        K F 
Sbjct: 61  LNGISEGPVSKAVANGVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFN 120

Query: 99  FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158
             T  G++      DG + VDMG P      I L         +                
Sbjct: 121 LHTKSGLVRPALLDDGRVCVDMGLPRTFLGSIKLTADCYDFTAET--------------- 165

Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218
            VSMGNPHA+ FV+ D+    L ++G++L     F +  N+  A+V +   + +R WERG
Sbjct: 166 -VSMGNPHAVIFVD-DIEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRVWERG 223

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            G+T ACG+ +CA++VA+    +      V + GG L I+  ++  V MTG A++ ++G 
Sbjct: 224 CGVTMACGTGSCATLVAAQRTGRVGVEADVILDGGTLHIKHEEDGPVLMTGPAQEVFKGT 283

Query: 279 L 279
           +
Sbjct: 284 I 284


>gi|239627681|ref|ZP_04670712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517827|gb|EEQ57693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 278

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 122/288 (42%), Gaps = 21/288 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + +D               +S        D ++LI        D  +
Sbjct: 3   MKFTKMQGIGNDYVYVDCFKEQVKEPGKVSRFISDRHFGIGADGLILICPS--GKADCRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
            + N DGS+   CGNG+RCV ++          R++ T ET+ GI   +       +V  
Sbjct: 61  EMYNADGSQGTMCGNGVRCVGKYAYDHGLVPADRRTMTVETLGGIKTLELEVKDGKAVS- 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                    I +      +  D      V+    R    + +GNPHA+++++  +   DL
Sbjct: 120 ---------ITVDMGEGTLTSDLPEDIQVDGKDYR-FVGIDVGNPHAVYYMDG-IDRLDL 168

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
              G     H  F  + VN     V   + L++R WERG G T ACG+ A ASV+AS  +
Sbjct: 169 EKTGPAFEYHERFAPDRVNTEFIEVVDRKHLNMRVWERGSGETWACGTGATASVLASILM 228

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKW 286
              +    V + GG L+I        +FMTG A + + G +DI    +
Sbjct: 229 GYVDDEAEVSLRGGKLMIRLDRATGRLFMTGPAVEVFNGSIDIPQEIY 276


>gi|228961188|ref|ZP_04122809.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229153125|ref|ZP_04281304.1| Diaminopimelate epimerase [Bacillus cereus m1550]
 gi|228630224|gb|EEK86874.1| Diaminopimelate epimerase [Bacillus cereus m1550]
 gi|228798482|gb|EEM45474.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 280

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+  V+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|229181234|ref|ZP_04308564.1| Diaminopimelate epimerase [Bacillus cereus 172560W]
 gi|228602127|gb|EEK59618.1| Diaminopimelate epimerase [Bacillus cereus 172560W]
          Length = 280

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|229193215|ref|ZP_04320166.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876]
 gi|228590192|gb|EEK48060.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876]
          Length = 280

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEAGVVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|330810926|ref|YP_004355388.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379034|gb|AEA70384.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 267

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 14/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F KM   G+  +++D R   + +TS     +   +    F+Q+ ++ D  DA  DA +
Sbjct: 3   LNFQKMHANGDDFVIVDSRNSANPVTSAMAQRMGDRNLGVGFNQLAVLLDCDDA--DARV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS +  CG+  R     L       S    T RG+L  +    G ISVDMG P+
Sbjct: 61  MFWNADGSALDVCGSATRGAADMLMREANVASVALRTNRGLLTCERTSTGDISVDMGVPL 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  IPLA++ D                  +P   SMGNPH  +FV+ D    D+A+ G
Sbjct: 121 FGWSDIPLAQALDTAVL----------PLAGSPAACSMGNPHCTYFVD-DPATVDIATIG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  + +F    N+   ++     + LR WERG G+    GS +C +VV        +R
Sbjct: 170 PAIETNALFPLRTNVHFVQIIDRTHIRLRIWERGAGVALGSGSCSCGAVVNGIRRGLLDR 229

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V+  GG + ++W     VF+ G  +  + G +
Sbjct: 230 TVEVECDGGSVTVQWDGVGAVFLIGPVEASFSGTM 264


>gi|229118409|ref|ZP_04247763.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3]
 gi|228664979|gb|EEL20467.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3]
          Length = 280

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 19/282 (6%)

Query: 11  MEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M        ++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSI----SVDMG 121
           N DGSE ++CGNG+RCV ++       +   F  ET+ GI+ A+   +  +     +DMG
Sbjct: 59  NNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKIDMG 118

Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E  N+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 234 KLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|229048630|ref|ZP_04194188.1| Diaminopimelate epimerase [Bacillus cereus AH676]
 gi|228722749|gb|EEL74136.1| Diaminopimelate epimerase [Bacillus cereus AH676]
          Length = 280

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 19/282 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          A+      + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMG 121
           N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+  V+ D+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 246

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 120/249 (48%), Gaps = 9/249 (3%)

Query: 36  NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--- 92
                      D ++     ++   D  +RI N DGSE + CGNG+RC+  FL       
Sbjct: 2   EMCDRHFGIGADGVIFALPGEN-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLS 60

Query: 93  -KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151
             + ++   T+ G++  +   DG I VDMG P L    IP        D    +      
Sbjct: 61  RNKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGA--ADGKVINQPLEVE 118

Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
                   VSMGNPH I FVE D+    L   G     HP F +  N    +V S + L 
Sbjct: 119 GQTWEVTCVSMGNPHCITFVE-DVAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLK 177

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGE 270
           +R WERG G+T ACG+ ACAS+VA+    +++R  +V++ GG L IEW + +  ++MTG 
Sbjct: 178 MRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGP 237

Query: 271 AKKEWEGKL 279
           A + + GKL
Sbjct: 238 ADRVFTGKL 246


>gi|229062608|ref|ZP_04199918.1| Diaminopimelate epimerase [Bacillus cereus AH603]
 gi|228716711|gb|EEL68407.1| Diaminopimelate epimerase [Bacillus cereus AH603]
          Length = 280

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 93/282 (32%), Positives = 142/282 (50%), Gaps = 19/282 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M          AI      + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121
           N DGSE +SCGNG+RCV ++      ++ K FT ET+ GI+ A+   +        +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L  + IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+    L
Sbjct: 119 APRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           K    + ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 234 KMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYE 275


>gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286]
          Length = 280

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 130/278 (46%), Gaps = 7/278 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + ++       N +  A+   +       D ++LI        D  +
Sbjct: 4   LKFTKMQGAGNDYIYMNGFTQQIDNPSELAVRLSNRHFGIGSDGLVLILPSDI--CDFRM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           ++ N DGSE + CGN  RCV +++       +K  T ET  G+         +I+  +  
Sbjct: 62  QMFNSDGSEAEMCGNASRCVGKYVYDNGLTDKKEITLETKAGVKYITLKDGDAIARKVTV 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            + +  L P        +             +     VSMGNPHA+ F++  +   DL  
Sbjct: 122 DMGEPILAPTLIPVRVAEEPVLEYPLDIDGKIWKISCVSMGNPHAVVFMKG-IKDLDLPV 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G     +P+F    N     V    +L++R WERG G T ACG+ ACA+ VA+   +  
Sbjct: 181 LGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACAAAVAAVLNNHC 240

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           +R +++ +LGG L IEW   NNHV+MTGEA   +EG+L
Sbjct: 241 DRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGEL 278


>gi|254467977|ref|ZP_05081383.1| diaminopimelate epimerase [beta proteobacterium KB13]
 gi|207086787|gb|EDZ64070.1| diaminopimelate epimerase [beta proteobacterium KB13]
          Length = 272

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 16/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV-DAF 63
           + F KM+ IGN  +VI+      +++   I  L+       FDQ+++I    + +  D  
Sbjct: 3   IPFTKMQAIGNDFIVINQIDQVYDLSQAQIAKLADRHFGIGFDQLLIIEKSDNPTAFDYK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC   ++       +   T ET+ G +   ++ +        
Sbjct: 63  YRIFNADGSEVEHCGNGARCFYEYIQHHKISSKNPITAETLNGSISLTKDDELIAVDMGT 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                      +          F I             + +GNPH +FFV+  +   D  
Sbjct: 123 Y----------SIGMKNEPSLFFDIFSDKKTEEIQGIYIDVGNPHIVFFVD-SVKDVDAV 171

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +    +F   VN+    + +   + L  +ERG GLT  CGS ACA+ +A+  L K
Sbjct: 172 RTGKSIQGSSLFPHSVNVGFCEIINSNEIKLVVYERGSGLTLGCGSGACAASIAAIHLKK 231

Query: 242 TNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              + V V M GG +  +   +NH+ + G+A   +EG +++
Sbjct: 232 VEGSLVKVNMPGGSIYTQAFADNHILLKGDASIVFEGIINL 272


>gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 290

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 128/291 (43%), Gaps = 20/291 (6%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58
           + MV F+KM G+GN  +VID        ++   + +  + T   +   D ++ +      
Sbjct: 2   TRMVMFSKMHGLGNDYVVIDESTQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPAA-G 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSI 116
             D   RI N DGSE + CGNG+RC  +F+      +      ET+ GI   +       
Sbjct: 61  DGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRKLDVETLAGIKTVELEIGDDG 120

Query: 117 SVDMGEPIL-----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           SV      +         IP+    D  + +                 +S+GNPHA+ FV
Sbjct: 121 SVVSSRVDMGTATFKTDQIPM----DVGECEFIDRFLPVEGEDIKLTALSVGNPHAVIFV 176

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + D    DL   G  +  HP+F E +N+    V     + + TWERG G T ACG+ A A
Sbjct: 177 D-DTGSVDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGTGATA 235

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279
           SV+A   L K + +V V + GG L I+ +        +M G+A   ++G L
Sbjct: 236 SVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDGIL 286


>gi|296127364|ref|YP_003634616.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563]
 gi|296019180|gb|ADG72417.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563]
          Length = 279

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVD 61
           +++F KM GIGN  + +D       +               +   D I+LI     A  D
Sbjct: 2   ILNFTKMHGIGNDYIYVDCFKEKFTVEDAMKYSPILSHRHYSIGADGIILIMPSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK----ENRDGS 115
             +R+ N DGSE + CGNG+RCV ++   +   K      ET+RGIL AK    +N   S
Sbjct: 60  VQMRMFNYDGSESEMCGNGIRCVAKYAYDKGISKNNPMKIETLRGILDAKLFIKDNEADS 119

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           + ++M  PIL+   IP     + +  +        + F      VSMGNPH + FV+ D+
Sbjct: 120 VEINMDSPILEGLKIPTTIDKNVIIDEPITFNGKTYYF----TCVSMGNPHTVIFVD-DV 174

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            + D+A  GN +  + +F    N+    V +   +  RTWERG G T ACG+ A A  VA
Sbjct: 175 SNMDIADIGNYIENNTIFPNRTNVEFVEVINRGEVKQRTWERGSGETLACGTGASAVCVA 234

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                +T+  +   +LGG L++ + +NN VFM GEA+  +EG + +
Sbjct: 235 GFISKRTDNIILNHLLGGDLILRY-ENNSVFMRGEARYSFEGSVKL 279


>gi|225848781|ref|YP_002728945.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644616|gb|ACN99666.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 288

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 19/291 (6%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  +VID       IT D I  +         D I++   +  +  D  +RI
Sbjct: 6   FVKSHGLGNDYIVIDSENITFEITQDFIKKICDVHYGIGSDGILV--KYPSSVADFKLRI 63

Query: 67  INCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGS------ISV 118
            N DGSE +  GNG+R   +  +      ++ FT ET  G++ AK            I+V
Sbjct: 64  FNPDGSEAEKSGNGLRIFCKFLYDYGYTNKEEFTVETKGGLVRAKIEEKNKFGKAKVITV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+ I +   IP+     +   ++  +G   +        VS+GNPH +   + +L   
Sbjct: 124 DMGKAIFEASKIPVKTDKKEFLGEKVKVGDKEYEVN----CVSVGNPHCVIIKK-ELNEE 178

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++ ++G+L+  HP+F   +N+   +  S +  ++  WERG G T A GS++CA       
Sbjct: 179 EIKTYGSLIENHPLFPNRINVQFVKPISEDQAEILIWERGAGFTYASGSSSCAVASVLVK 238

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
                  +++KM+GG L I    + ++ MTGE ++   G +   + ++++ 
Sbjct: 239 KGLAKNDITIKMIGGELKITVDKDWNIRMTGEVQEICRGII---SEEFLES 286


>gi|313904541|ref|ZP_07837917.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6]
 gi|313470683|gb|EFR66009.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6]
          Length = 300

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 31/301 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + ++         +  +I           D ++L+   + A  D  +
Sbjct: 1   MKFTKMHGCGNDYVYVNCFEEKVFEPSEVSIKVSDRHKGIGSDGLILVKPSKVA--DCEM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISV 118
            I N DGS+ + CGNG+RCV +F+  +    +   T +T  G+        G     + V
Sbjct: 59  DIYNADGSQAKMCGNGIRCVAKFVYDKGIVPKTHMTIDTQSGVKTLDLTIVGGKCKKVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------ 172
           +MG+  +    +P+    +        +             VSMGNPHA+ F +      
Sbjct: 119 NMGKAEIVASKVPVIADTELAVGAPITVKDQ----AFTYTAVSMGNPHAVVFTDENPALA 174

Query: 173 ---------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
                    +DL    +   G     HP F + +N     V    ++++R WERG G T 
Sbjct: 175 NAGYGSMTGEDLSTLKIEEIGPDFEFHPNFPDRINTEFIHVLDSNTIEMRVWERGSGETM 234

Query: 224 ACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           ACG+ ACA+ VAS    K  R   V+VK+LGG L+IEW +  N V+MTG A   +EG+LD
Sbjct: 235 ACGTGACAAAVASILNRKVERGKPVTVKLLGGDLVIEWDEKENTVYMTGPATTVFEGELD 294

Query: 281 I 281
           +
Sbjct: 295 L 295


>gi|229076315|ref|ZP_04209280.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18]
 gi|228706750|gb|EEL58958.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18]
          Length = 280

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 19/282 (6%)

Query: 11  MEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           M G+GN  + ++M        ++   A    + +     D ++LI     A V   +R+ 
Sbjct: 1   MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSI----SVDMG 121
           N DGSE +SCGNG+RCV ++       +   F  ET+ GI+ A+   +  +     +DMG
Sbjct: 59  NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLAKIDMG 118

Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+    L
Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+    
Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233

Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           K    + ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 234 KLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|228942106|ref|ZP_04104646.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228981675|ref|ZP_04141970.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407]
 gi|228777787|gb|EEM26059.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407]
 gi|228817440|gb|EEM63525.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 280

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +        +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FVE D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|302385663|ref|YP_003821485.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
 gi|302196291|gb|ADL03862.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1]
          Length = 286

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           +   K  G+GN  L+ D       +T ++I  +         D +++            +
Sbjct: 3   ITLEKYHGLGNDYLIFDPNKNELKLTEESIRLICNRNFGVGSDGLLV--GPVLGQDKLEV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG--SISVDM 120
           +I+N DGSE +  GNG+R   ++      +++  F   T+ G    +   +    I V M
Sbjct: 61  KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNRFIVNTLSGQQTIQYLNEDGTRIKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       IP+     ++  +    G + +        VS+GNPH + ++ +D+     
Sbjct: 121 GKLSFYSDEIPVTGPRREVLNETMMFGSIPYR----VTCVSIGNPHCVIWL-NDISKDLA 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G        F E +N  + +V    ++++  +ERG G T A G++ CA+  A+  + 
Sbjct: 176 CRIGKHSETADYFPEKINTELLKVLDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYRMG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            T+  + V M GG L +E   +  V MTGE      G+  + 
Sbjct: 236 LTDPKMYVHMPGGVLEVEIEKDGSVLMTGEVGYV--GRFTLS 275


>gi|327400806|ref|YP_004341645.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6]
 gi|327316314|gb|AEA46930.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6]
          Length = 280

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 23/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61
           ++F KM G GN  +V+D        +      + A+         D  + +     A  D
Sbjct: 5   LEFTKMHGNGNDFVVVDEFHEEVVPEEHKPQFVRAVCKPRFGVGADGAIFVQPSSVA--D 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117
           A  R  N DGSE   CGNG+RC  R++          K+ T   I+ + V+ ++ +  + 
Sbjct: 63  AKFRYFNSDGSEAAMCGNGIRCFARYVVEEGYADRRFKAETLAGIKELEVSVKDGEYWVR 122

Query: 118 VDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175
           VDMG+P+ +   IP A   FD +  D F +         + + V+ G PHA+ FV+  D 
Sbjct: 123 VDMGKPVFEPAKIPAAGGTFDGVWHDTFELFGRKV----DVYAVNTGVPHAVVFVDSLDF 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
              +          +  F EG N++ AR+ S   +++RT+ERGV   T +CG+ + A V 
Sbjct: 179 DILEARKI----RYNKAFPEGTNVNFARIVSRNEVEVRTYERGVEDETLSCGTGSVAVVA 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  L        VK  GG L IE  D    FMTG+A + ++G L 
Sbjct: 235 VASKLGLIEPEAIVKTKGGVLRIEVRD--TAFMTGKATRVFDGVLK 278


>gi|170759688|ref|YP_001787305.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406677|gb|ACA55088.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 273

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R  +      +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGNLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A  + +G     + 
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKKAFLDIEGDKVKYIT 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             + +   I              +     +    +     MG PH I F   D Y     
Sbjct: 120 INMGEP--IFEGEKISNEKEKIINKIIRENNKEYSITAFHMGVPHTIIFGNLDEYDIGEG 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
                + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS  L  
Sbjct: 178 K---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASNLLGY 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 235 TGKSTEVMLPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|198275828|ref|ZP_03208359.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135]
 gi|198271457|gb|EDY95727.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135]
          Length = 268

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G+GN  + ++          +   A S        D ++LI D   A  D  +
Sbjct: 3   IEFTKMHGLGNDYIYVNTMKYPLTNPEEKSIAWSRPHTGIGSDGLVLIGDSDKA--DFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE + CGN  RC+    +      +     +T+ GI              +  
Sbjct: 61  RIFNADGSEAKMCGNASRCIGKYLYEYGLTTKTDILLDTLSGIKELHLQVKEGKVESVRV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +     I               +   +    R    VSMGNPH + FV+  +    LA 
Sbjct: 121 DMGIPADI-------------HWVDLGDAYPFRKGVAVSMGNPHLVIFVDK-MEEVALAE 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G +L +HP+F + VN+  A+V + E++ +R WERG G+T ACG+ ACA+ VA+    + 
Sbjct: 167 VGPVLERHPLFPDRVNVEFAQVLNKENIRMRVWERGSGITQACGTGACATAVAAAFSGQC 226

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
               +V M GG L I+W  +  H++MTG A K ++G +++K 
Sbjct: 227 GSHATVCMDGGDLTIDWAGEGQHLYMTGPAVKVFDGTIELKE 268


>gi|78060948|ref|YP_370856.1| diaminopimelate epimerase [Burkholderia sp. 383]
 gi|77968833|gb|ABB10212.1| diaminopimelate epimerase [Burkholderia sp. 383]
          Length = 266

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 122/275 (44%), Gaps = 14/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F KM   G+   ++D+RG    I       +        F+Q+ ++ D  DA+  A +
Sbjct: 3   IGFHKMHANGDDFAIVDLRGATHAIDGRLARQMGDRKRGIGFNQLAVVSDCDDAA--ARV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS + +CG+  R V   L       S    T RG LV     +  ISV+MG P+
Sbjct: 61  AFWNADGSPLDTCGSATRGVAWQLMRETGLSSLVLRTPRGYLVCSAEANDRISVEMGTPL 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W+ +PLA + D +                 P   +MGNPH  FFV+ DL   D+A+ G
Sbjct: 121 TGWRDVPLAEALDTLAL----------PLPGAPAACNMGNPHCTFFVD-DLRAIDVAALG 169

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +  HP+F +  N+   +V     + LR WERG G+    GS +C +VV        + 
Sbjct: 170 PAIETHPLFPQKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRGLLDD 229

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V+  GG + ++W     V ++G     + G  
Sbjct: 230 IVRVECDGGDVTVQWSGTGSVLLSGPVTFGFSGVW 264


>gi|300869858|ref|YP_003784729.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000]
 gi|300687557|gb|ADK30228.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000]
          Length = 279

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F KM GIGN  + ID       +               +   D I+LI   + A  D 
Sbjct: 3   LNFTKMHGIGNDYIYIDCFKESFTVEDAKKYSPILSHRHYSIGADGIVLIMPSKIA--DV 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGSI 116
            +R+ N DGSE + CGNG+RCV ++       K      ET+RG+L A    K +   S+
Sbjct: 61  TMRMFNYDGSESEMCGNGIRCVAKYAYDNNISKNNPMKIETLRGVLEANLFIKNDEVDSV 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            ++M  PIL+   IP       +  +        + F      VSMGNPH + FV+ D+ 
Sbjct: 121 EINMDSPILEGLKIPTTIDKTPIIDEPITFNGKTYYF----TCVSMGNPHCVIFVD-DVK 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           +  +   G+ +  +PMF    N+   +V +   +  RTWERG   T ACG+ A A  VA 
Sbjct: 176 NMRIDDIGSFMENNPMFPNRTNVEFVQVLNRGEVIQRTWERGSAETLACGTGASAVCVAG 235

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +T+  +   +LGG L++ +  +N+VFM GEA+  + G +++
Sbjct: 236 FISKRTDNIILNHLLGGDLILTYK-DNNVFMKGEARYAYRGYVEL 279


>gi|153938075|ref|YP_001391234.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland]
 gi|170755940|ref|YP_001781473.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra]
 gi|152933971|gb|ABS39469.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland]
 gi|169121152|gb|ACA44988.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra]
 gi|295319270|gb|ADF99647.1| diaminopimelate epimerase [Clostridium botulinum F str. 230613]
          Length = 273

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I   +        R       +    +     MG PH I F   D Y 
Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                    + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|331269367|ref|YP_004395859.1| diaminopimelate epimerase [Clostridium botulinum BKT015925]
 gi|329125917|gb|AEB75862.1| diaminopimelate epimerase [Clostridium botulinum BKT015925]
          Length = 268

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 11/275 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           M+G GN  +VID R    N T   I             D I+LI   + +  D  + IIN
Sbjct: 1   MQGTGNDFVVIDDRKGVFNGTESEIAKQVCHRRFGIGADGILLIRKSEIS--DIKMEIIN 58

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEPILD 126
            DGS    CGNG+RC  R++         T   ET  GI +A  N   +    +   + +
Sbjct: 59  ADGSYADMCGNGIRCFARYVYDNKIVYKDTINIETGDGIKIAHLNIVDNTVEGITINMGE 118

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           + L P     +  ++       +N        +        +    DD+        G  
Sbjct: 119 FSLNPEDIPANCKEKIMNKKIYINDKEYIINSMKLGVPHTVVMCKTDDID----IEEGKY 174

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           + K+ +F+EG N++   +   +++ ++TWERG G T ACG+ +CAS   S  L       
Sbjct: 175 IEKYELFTEGTNVNFCEIIDKDTIKVKTWERGAGPTLACGTGSCASFAISNILGYVGNKA 234

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            V + GG L+ E+  +N VFMTG A+  ++G+ ++
Sbjct: 235 KVFVPGGELITEFK-DNKVFMTGPAEIVFKGEFNL 268


>gi|310780441|ref|YP_003968773.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926]
 gi|309749764|gb|ADO84425.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926]
          Length = 275

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 18/281 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M+ F K  GIGN  ++   R       + +  A+     +     D +M+    +    D
Sbjct: 1   MLKFEKYHGIGNDFIIF--REEEVAGLDYSELAMKVCHRNFGIGADGMMV--AAKSEKAD 56

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVAKENRDGSI 116
             +   N DGSE   CGNG+RC   F+ +    +       T      I   +++     
Sbjct: 57  IRMIFYNADGSEAPMCGNGVRCFSHFVRNNKLVEKDLIAVETLAGNMLIKTEEKDGRYLA 116

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG PI +   IP++ S    ++D       ++    +   + MG  H++ FV+ DL 
Sbjct: 117 RVNMGMPIFETDSIPMSVS----EKDYIERKIESYDREFSISALFMGTTHSVTFVD-DLE 171

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             D+  +G  L  +P+F    N++ A+  S + +D++TWERG G T ACG+ ACA VV  
Sbjct: 172 TLDIYKYGRNLEINPIFPNKTNVNFAKAISKDRVDVKTWERGAGYTFACGTGACAVVVIG 231

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
               + ++ V V + GG L IE  D+  VFMTGE++K  EG
Sbjct: 232 NLTGRLDKNVEVAVPGGKLFIELTDDG-VFMTGESQKIAEG 271


>gi|170736997|ref|YP_001778257.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
 gi|169819185|gb|ACA93767.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
          Length = 269

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG   +    +  D +  +        F+Q+ +I        
Sbjct: 3   IAFQKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVI--SDGDDA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 61  VARVAFWNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ +P++ + D +                 P   SMGNPH  FFV+ DL   D+
Sbjct: 121 GAPRLGWQDVPVSEAVDTLAL----------PLPGAPAACSMGNPHCTFFVD-DLRAIDV 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 170 ATLGPTIETHPLFPLKTNVHFVQVIDRMHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG + ++W     VF++G     + G  
Sbjct: 230 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFSGVW 268


>gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 279

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/284 (30%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM GIGN  +  +       N    A+       +   D I+LI   + A  DA +
Sbjct: 1   MKFWKMHGIGNDYIYFNCFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPSRVA--DAKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGIL----VAKENRDGSISV 118
           R+ N DGSE + CGN +RCV ++L      +      ET+ GI       +      + V
Sbjct: 59  RMFNLDGSEGKMCGNAIRCVGKYLYENNITRKTNLKIETLSGIKDLTLQVENGAVNIVEV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG PIL+   IP+    D +      I         N   VSMGNPH      DD+   
Sbjct: 119 DMGAPILEPAKIPVDLEGDVIINHELXI----EEVAYNITCVSMGNPHC-VVFVDDVDDI 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           +L   G L   + +F + VN    +  +  +  +R WERG G T ACG+ ACA  VA   
Sbjct: 174 ELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACAVAVACVL 233

Query: 239 LH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               K N  +++ + GG L I +  +  +FMTG A K + G ++
Sbjct: 234 NGYAKKNEDITIILKGGELKIRYT-DETIFMTGTATKAFSGDVE 276


>gi|225850571|ref|YP_002730805.1| diaminopimelate epimerase [Persephonella marina EX-H1]
 gi|225645291|gb|ACO03477.1| diaminopimelate epimerase [Persephonella marina EX-H1]
          Length = 289

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 132/280 (47%), Gaps = 15/280 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN+ +V+D      ++TS++I  +         D ++L         D  +RI
Sbjct: 6   FVKSHGLGNEYIVLDDENIDFSLTSESIKTICDVHFGIGSDGVLL--KVHSEKADFGLRI 63

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----ISVD 119
            N DGSE +  GNG+R   ++L       ++ FT ET  G++ A+     +     I+VD
Sbjct: 64  FNPDGSEAEKSGNGLRIFCKYLFDLGFTDKREFTVETKGGVVRARVEEVINGKARLITVD 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +G+     + IP++   D+   ++  +             VS+GNPH +  V+  L    
Sbjct: 124 IGKATFKTEDIPVSIEKDECIGEKIVVDDREFEIN----CVSVGNPHCVIIVDK-LDDEI 178

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +  +G L+  H +F    N+   +  S + +++R WERG G T A G+++ A        
Sbjct: 179 VKKYGRLIENHRIFPNRTNVQFVKPVSRDQVEIRIWERGAGYTLASGTSSSAVAAVMVKR 238

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T+R V+V M GG L I   +  ++ MTGE ++   G L
Sbjct: 239 GITDRDVNVVMPGGILRISVDEEWNIRMTGEVQEICRGVL 278


>gi|187779484|ref|ZP_02995957.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC
           15579]
 gi|187773109|gb|EDU36911.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC
           15579]
          Length = 273

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G GN  +V+D R         +    L     +   D I+ + +  + +    
Sbjct: 1   MEFTKMTGNGNDFIVLDDRKGELIGKEKELAQKLCNRHFSIGADGILFVRES-NTNAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKAIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   D   
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSI----TAFHMGVPHTIIFGNLD--- 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  +   P+F EG N++   V     + ++TWERG G T ACG+ +CAS +A+ 
Sbjct: 171 EYDIEEGKNIETLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIAAN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +   +FM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEKG-IFMKGPADICFRGEIDV 273


>gi|310659167|ref|YP_003936888.1| diaminopimelate epimerase [Clostridium sticklandii DSM 519]
 gi|308825945|emb|CBH21983.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium sticklandii]
          Length = 281

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  ++ +       + +  A            D +M          D  +
Sbjct: 1   MLFWKMQGAGNDFILFNNLDGRYVDYSQLAKKLCDRHFGIGADGMMACEKSTS--CDIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL------VAKENRDGSISV 118
              N DGS+   CGNG+RC  +F+         +F             + + +    + V
Sbjct: 59  VYYNQDGSKADMCGNGIRCFSKFIYENKIVDKTSFLVEAAARNYDISLITQNDEVKLVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG P L+ KLIP    + +   +   I     L       V +G PH + F + D+   
Sbjct: 119 EMGLPTLEPKLIPALTDYTEFINEEIVIEDRKFL----ASAVLIGVPHLVIFED-DISLQ 173

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           +L  +G+ L ++  +F + +N++  ++    ++ ++T+ERG G T ACG+   +S   + 
Sbjct: 174 ELDYYGSRLEQNTKLFPKKINVNFVKIIDKSTIGVKTYERGCGYTLACGTGMTSSAYIAN 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            L   N  V V   GG + IE      ++MTG A+K  +G++D
Sbjct: 234 KLGLVNDKVKVSSPGGEVEIEILK-EKLYMTGPAQKICDGRVD 275


>gi|307354039|ref|YP_003895090.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571]
 gi|307157272|gb|ADN36652.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571]
          Length = 286

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 24/288 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQD 57
           ++ ++ F K++G GN  ++ID                            D ++ +     
Sbjct: 11  EAFVIPFVKIQGNGNDFILIDETDGEVIPDPMKAEFAALYCDRRFGIGADGVLFLSKSDK 70

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAK----ENR 112
           A++   +RI+  D SE + CGNG+RC+V++   +    ++   ET+ G L  +    EN 
Sbjct: 71  ANI--RMRIMQPDKSEAEMCGNGIRCLVKYAYDNDYITETCVVETLAGNLPVELGYNENN 128

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +    +DMG+ + +   IP     + + +   +          + + V+ G PHA+ FV+
Sbjct: 129 EFIAKIDMGKVLYECSEIPAKGGGEYLRKINGY----------DVYAVNTGVPHAVIFVD 178

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACA 231
             +    +      +  H  F  G N++   +T  + + +RT+ERGV   T +CG+ + A
Sbjct: 179 -SVEKLSIEEIAPSIRYHESFPNGANVNFVEITGKDEISIRTYERGVESETLSCGTGSTA 237

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           S   +  L KT   V V  +GG L+I + + +  FM G A   + G++
Sbjct: 238 SAAVAYKLGKTGSRVKVNTVGGPLVI-YLEEDVAFMEGPAATVFTGRI 284


>gi|260589955|ref|ZP_05855868.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
 gi|260539762|gb|EEX20331.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
          Length = 304

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K   +GN  L+ D     + +  + I  L   +     D I  +          ++
Sbjct: 25  MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 82

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISVDM 120
           ++ N DGSE +  GN +R    +L +  + +S +F         K          I + M
Sbjct: 83  KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 142

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+   D + I L     +   + F+ G   +        VS+GNPH +   + ++    +
Sbjct: 143 GQLSFDSEKIGLTGPKREALHEYFNFGGEEY----ACTCVSVGNPHCVIITD-EISRAKV 197

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G        F E +N  I +V    ++ +  +ERGVG T + G+ +CA+  A+  L 
Sbjct: 198 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGAAYRLG 257

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG L  +  +N +V M G  K     +L
Sbjct: 258 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 296


>gi|294501682|ref|YP_003565382.1| diaminopimelate epimerase [Bacillus megaterium QM B1551]
 gi|294351619|gb|ADE71948.1| diaminopimelate epimerase [Bacillus megaterium QM B1551]
          Length = 284

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 17/283 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM  +GN  + ++M   H     +   A+   +       D ++LI   + A  D  
Sbjct: 5   QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----IS 117
           +R+ N DGSE ++CGNG+RCV ++        S  F  ET+ G++ A  +  G+    ++
Sbjct: 63  MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG PIL  + IP+  +      +         L       VSMGNPH +F+V +D+  
Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKERL---KGTAVSMGNPHVVFYV-NDIEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K   F EGVN+    V +   L+ R WERG G+T ACG+ ACA+VV+S 
Sbjct: 179 APLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSSV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              KT  +    V + GG L I W +  +V MTG A    +G 
Sbjct: 239 LNEKTKKDAPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDGT 281


>gi|288779625|dbj|BAI70377.1| diaminopimelate epimerase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 287

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 116/283 (40%), Gaps = 8/283 (2%)

Query: 1   MQS-SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M++ S + F KM G GN  +V+D+R   D                  D ++ I + + A 
Sbjct: 4   MRTPSTLPFTKMHGAGNDFVVLDLRDGPDPSPELCRALADRHKGVGCDLVLGIREPRSAR 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSIS 117
             A   I   DGS    CGNG RCV  +       +   F   +  G          +  
Sbjct: 64  AVAAFDIWTADGSRSAQCGNGARCVAAWAVRAGLARGPRFALDSPSGTHEVDVLDADTFR 123

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +  P    + IPL   F        +   +          VSMGNPHA+  V+ D   
Sbjct: 124 VALAVPRFAPESIPL---FGHDGEQDLYEADLGDGTRVRFAAVSMGNPHAVIEVD-DTAT 179

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +A  G  +    +F   VN+  ARV S + + LR  E G G T ACGS ACA+     
Sbjct: 180 APVARVGRAVQASGLFLPTVNVGFARVESRDRVHLRVHEYGAGETLACGSGACAAAAVLM 239

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
              + +R VSV + GG L I W D+   V MTG A   +EG  
Sbjct: 240 RRGRVDRNVSVVLPGGELRISWPDDAADVLMTGPAAFVYEGTF 282


>gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
 gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
          Length = 244

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 9/248 (3%)

Query: 37  ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--- 93
                     D ++     Q    D  +RI N DGSE + CGNG+RC+  FLT       
Sbjct: 1   MCDRHFGIGADGVIFALPGQK-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISR 59

Query: 94  -RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152
            +  +   T+ GI+  +   DG + VDMG P L  + IP        D    ++      
Sbjct: 60  SKDYYLIHTLAGIIRPQLTDDGQVKVDMGSPRLLAQEIPTT--LVPGDSKVINLPLEIGK 117

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212
              +   VSMGNPH I FVE D+    +   G     HP+F +  N    +V +   L +
Sbjct: 118 QTWHITCVSMGNPHCITFVE-DVASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSHLKM 176

Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEA 271
           R WERG G+T ACG+ ACAS+VA    +  +R  ++++ GG L I+W + +  ++MTG A
Sbjct: 177 RVWERGAGITLACGTGACASLVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMTGPA 236

Query: 272 KKEWEGKL 279
           ++ + GK+
Sbjct: 237 ERVFTGKI 244


>gi|229147481|ref|ZP_04275828.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24]
 gi|228635907|gb|EEK92390.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24]
          Length = 280

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  +     +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+  V+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + + ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYE 275


>gi|268316322|ref|YP_003290041.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252]
 gi|262333856|gb|ACY47653.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252]
          Length = 292

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 28/296 (9%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           ++ +++F KM G GN  +V+D R      + +   A            D ++ +   +  
Sbjct: 3   KTLVLEFTKMNGAGNDFVVLDNRFYAFSDEELAELARRYCRRRFGIGADGLLALAPPRQP 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSIS 117
                +R  N DGS    CGNG RC+ RF      R +   FET  GI  A+        
Sbjct: 63  DTHYRMRYFNADGSLGTMCGNGARCLARFARLAGIRDNPLRFETDAGIYRAEV------- 115

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                P      + L             +         +   +  G  H + FV   +  
Sbjct: 116 -----PDDPQAPVRLYLPPAGTYEPNPRLATPLDTQFESVAFIWTGTEHLVCFVPA-VEA 169

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTS----LESLDLRTWERGVG-LTAACGSAACA 231
             +A +G  L   P +   G N+    V         L  RT+E+GV   T ACG+ A A
Sbjct: 170 TPVAEWGPRLRHDPALQPRGANVDFVEVVGEAQERSVLRARTYEKGVEAETLACGTGAVA 229

Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
           + + +    +  +  ++V M GG L + +   +     +F+ G A+  + G +++ 
Sbjct: 230 AALVAWRQGRVRQLPIAVHMPGGVLTVGFRPEDDGETELFLEGPAEVVFRGTVEVP 285


>gi|228903437|ref|ZP_04067564.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222]
 gi|228856212|gb|EEN00745.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222]
          Length = 280

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +        +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|65316928|ref|ZP_00389887.1| COG0253: Diaminopimelate epimerase [Bacillus anthracis str. A2012]
 gi|228917567|ref|ZP_04081111.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229158537|ref|ZP_04286596.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342]
 gi|228624851|gb|EEK81619.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342]
 gi|228842047|gb|EEM87150.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 280

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +        +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275


>gi|107027596|ref|YP_625107.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116693692|ref|YP_839225.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
 gi|105896970|gb|ABF80134.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
 gi|116651692|gb|ABK12332.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
          Length = 269

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG   +    +  D +  +        F+Q+ +I        
Sbjct: 3   IAFLKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVI--SDGNDA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I VDM
Sbjct: 61  AARVAFWNPDGSTLDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ +PL+ + D +                 P   SMGNPH  FFV+ D+   D+
Sbjct: 121 GAPRLGWQDVPLSEAIDTLAL----------PLPGAPAACSMGNPHCTFFVD-DVGTIDI 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  HP+F    N+   +V     + LR WERG G+    GS +C + V      
Sbjct: 170 EALGPTIETHPLFPLKTNVHFVQVIDRSHIRLRIWERGGGVPLGSGSCSCGAAVNGIRCG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG ++++W     VF++G     + G  
Sbjct: 230 LLDDTVRVTCDGGDVIVQWDGAGSVFLSGPVTFGFSGVW 268


>gi|229590999|ref|YP_002873118.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
 gi|229362865|emb|CAY49775.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
          Length = 267

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/275 (30%), Positives = 128/275 (46%), Gaps = 14/275 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM   G+  ++ID RG  D IT+     L        F+Q+ +++D ++A+  A 
Sbjct: 2   LLPFVKMHAHGDDFIIIDRRGLDDPITAAIARQLGNRHTGIGFNQLAVVYDCEEAA--AR 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           I   N +G+ + +CG+  R V   L     + S    T RG+L         +SVDMGEP
Sbjct: 60  ISFWNANGTPLATCGSATRGVADRLMHETGKDSIVLRTDRGLLTCVRAPGRQVSVDMGEP 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            L+W  +PL+ + D +                +P   SMGNPH  FFV+ D+   D+A  
Sbjct: 120 SLEWTAVPLSDAMDTLTL----------PVEGSPAACSMGNPHCTFFVD-DIAAVDVAGL 168

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L  HP+F    N+   +V     + LR WERG G+    GS  C +VV        +
Sbjct: 169 GPALEIHPLFPARTNVHFVQVLDRSHIRLRIWERGGGVALGSGSCCCGAVVNGIRRGLLD 228

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             V V+  GG + ++W     V +TG  +   +G 
Sbjct: 229 ATVQVQCDGGTVTVQWTGEGGVVLTGSVEPVMQGS 263


>gi|148379873|ref|YP_001254414.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502]
 gi|153933047|ref|YP_001384170.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397]
 gi|153935384|ref|YP_001387711.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall]
 gi|148289357|emb|CAL83453.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502]
 gi|152929091|gb|ABS34591.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397]
 gi|152931298|gb|ABS36797.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall]
          Length = 273

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPIIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I   +        R       +    +     MG PH I F   D Y 
Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                    + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|322806165|emb|CBZ03733.1| diaminopimelate epimerase [Clostridium botulinum H04402 065]
          Length = 273

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I  +   +K+           +          MG PH I F   D Y 
Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYFI----TAFHMGVPHTIIFGNLDEYD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                    +   P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 174 IGEGK---NIEGLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|189465550|ref|ZP_03014335.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM
           17393]
 gi|189437824|gb|EDV06809.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM
           17393]
          Length = 272

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 20/283 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM G GN  + ++            ++   +       D ++LI     A  D
Sbjct: 2   TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    +      + + T +T+ GI + K + +      
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +         + + R  D  ++     G            VSMGNPH + FVE D+   +
Sbjct: 120 VT--------VDMGRPADMKEQPIEANG-----QKFTGTTVSMGNPHLVIFVE-DIKDIN 165

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 166 LESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVAAALT 225

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
            K+ R   + M GG L IEW +  +HV+MTG A + ++G++ I
Sbjct: 226 GKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGEVII 268


>gi|168180500|ref|ZP_02615164.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916]
 gi|182668755|gb|EDT80733.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916]
          Length = 273

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +         
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRESGT-DAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I   +        R       +    +     MG PH I F   D Y 
Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                    + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L  T ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|218288532|ref|ZP_03492809.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241189|gb|EED08364.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1]
          Length = 278

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 118/278 (42%), Gaps = 8/278 (2%)

Query: 6   VDFAKMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM  +GN  + +D        D++ S A            D ++L+     A  D 
Sbjct: 1   MQFFKMHALGNNYVFVDTARATLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +RI N DGSE +SCGNG+RCV R+   R    +  F       V        +   +  
Sbjct: 59  GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVDGRVRL 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDL 180
             +D                                  +VSMGNPH +  V+  +   D+
Sbjct: 119 VTIDMGKPRFGTEAVTYRGSDQGEDVRVEAGGARYTGTLVSMGNPHFVTLVDR-VDDVDV 177

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  +  HP F + VN+    V + + +D R +ERG G+T ACG+ ACASV A     
Sbjct: 178 ERVGRAIESHPDFPDRVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAALAKKG 237

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                V+V +LGG L IE  D+ HV+MTGEA    EG 
Sbjct: 238 FVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGT 275


>gi|282601131|ref|ZP_05980843.2| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176]
 gi|282569942|gb|EFB75477.1| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176]
          Length = 305

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 120/283 (42%), Gaps = 10/283 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM+G GN  + +D R       +    AL      +   D ++ I   Q +  DA 
Sbjct: 26  LEFTKMQGAGNDYIYLDCRHSGVPADAAQWAALLSRRRFSVGADGLICIAPPQLSDGDAT 85

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR--GILVAKENRDGSISVDMG 121
           + + N DGSE   CGNG+RCV  +L +   +K       R  G        +      MG
Sbjct: 86  MVMFNADGSEGAMCGNGIRCVAEYLYTHGVQKELIELDTRQAGRKTLYRVGEHRWRAGMG 145

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI-FFVEDDLYHYDL 180
                   +P   +          +  V          VSMGNPH + F  E       L
Sbjct: 146 RFSTRAADLP---AVGLGAGPLLEVPLVAAGQSWQVSCVSMGNPHCVVFCNEAPPAGVQL 202

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A +G  +  HP F +G+N+   +  S  SL    WERG G T ACG+ ACA+ V      
Sbjct: 203 ADWGAAVENHPAFPQGINVEFVQAESPTSLTTTVWERGSGATLACGTGACAAAVVGVLRG 262

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              R   + V++ GG L +    ++ V +TG A+  ++G +++
Sbjct: 263 ICPRETPIDVRLPGGTLTVRVLQDDTVLLTGPAETVFDGYVEV 305


>gi|226949210|ref|YP_002804301.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto]
 gi|226841748|gb|ACO84414.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto]
          Length = 273

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 19/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A    +E++   I+
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           ++MGEPI + + I   +        R       +    +     MG PH I F   D Y 
Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                    + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS 
Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            L    ++  V + GG L IE  +N  VFM G A   + G++D+
Sbjct: 231 LLGYIGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|266621470|ref|ZP_06114405.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
 gi|288866845|gb|EFC99143.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
          Length = 285

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 14/282 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           +   K  G+GN  L+ D       +T +A+  +         D +++            +
Sbjct: 3   ITLEKYHGLGNDYLIFDPNKNEWKLTKEAVRLICNRNFGVGSDGLLV--GPILGENKMEV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDM 120
           +I+N DGSE +  GNG+R   ++L      +   F         + +        I V M
Sbjct: 61  KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNHFAVNTLSGEQQIHYLNEEGTRIKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G        IP+     ++  +    G + +        VS+GNPH + ++ +D+    +
Sbjct: 121 GHLSFWSDEIPMTGPRREVLNETLTFGSIPYR----VTCVSIGNPHCVIWL-NDISKDLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G        F E VN  + RV    ++++  +ERG G T A G++ CA+  A+  + 
Sbjct: 176 CRIGRHSEAADCFPEKVNTELLRVVDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYKMG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            T+  + V M GG L +E  ++  V MTG+      GK  + 
Sbjct: 236 LTDPKMYVHMPGGVLEVEIEEDVSVLMTGDVGYV--GKFTLS 275


>gi|228936237|ref|ZP_04099036.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823353|gb|EEM69186.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 280

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +        +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 275


>gi|297180324|gb|ADI16542.1| diaminopimelate epimerase [uncultured bacterium HF4000_009C18]
          Length = 275

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 4/278 (1%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + +D  KM+G+GN  ++ D R    ++T D I  +S   N   DQ++ I + ++ +    
Sbjct: 2   NKLDAYKMDGLGNDFIIFDKRKKSISLTKDQIIKISDRSNIGCDQVIFIDNDKNNNT--S 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DG E+ +CGNG RC    L      K  +  T  GIL A+      + ++MG+P
Sbjct: 60  LTFYNSDGGEIAACGNGSRCTAYLLMKENNSKKISLRTKVGILQAELYDKNLVRINMGQP 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
              W  IPL++  D  +  +  I   +   +   F +S+GNPH IFFVE D   ++L   
Sbjct: 120 NFKWGKIPLSKEMDNKNL-KIKINSTDDKEIEGGFSLSVGNPHIIFFVE-DFNKFNLKEI 177

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  H  F E  N+++A + + + + ++ WERG GLT ACG+AACA+ VA   L    
Sbjct: 178 GPKIENHNYFPEKCNVTLASIKNKKHVKIKVWERGAGLTKACGTAACATAVAGAVLKLNE 237

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           R V ++   G L I+W+ +N+++MTG+  +  +  + I
Sbjct: 238 RYVDIEFQEGLLNIDWNADNNIYMTGKISEVKKITVSI 275


>gi|30410829|ref|NP_660893.2| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 269

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 10/275 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +VI+       +T   I  LS  +    FDQ++LI    +   D   RI N 
Sbjct: 1   MHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           +G+EV+ CGNG RCV  FL  +  + ++     T +  +  K   D +I V+M EP    
Sbjct: 61  NGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKL 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + I +++       + F +  +N        +VS+GNPH +  VE  + +  +   G LL
Sbjct: 121 EEISISKKI---VLNNFSVKLINKNL--KCSLVSIGNPHCVIKVE-SINNAPVKKIGELL 174

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            K+ +F +G+N+   +V +   + LR +ER VG T +CGS ACA+V      +     V 
Sbjct: 175 EKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLLCDNVK 234

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           V +LGG L+I+W   N  ++M G A   ++G + I
Sbjct: 235 VDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 269


>gi|331084274|ref|ZP_08333379.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401809|gb|EGG81386.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 280

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 113/279 (40%), Gaps = 12/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K   +GN  L+ D     + +  + I  L   +     D I  +          ++
Sbjct: 1   MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISVDM 120
           ++ N DGSE +  GN +R    +L +  + +S +F         K          I + M
Sbjct: 59  KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+   D + I L     +   + F+ G   +        VS+GNPH +   + ++    +
Sbjct: 119 GQLSFDSEKIGLTGPKREALHEYFNFGGEEY----ACTCVSVGNPHCVIITD-EISRAKV 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G        F E +N  I +V    ++ +  +ERGVG T + G+ +CA+   +  L 
Sbjct: 174 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGVAYRLG 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG L  +  +N +V M G  K     +L
Sbjct: 234 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 272


>gi|295707030|ref|YP_003600105.1| diaminopimelate epimerase [Bacillus megaterium DSM 319]
 gi|294804689|gb|ADF41755.1| diaminopimelate epimerase [Bacillus megaterium DSM 319]
          Length = 284

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 17/282 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM  +GN  + ++M   H     +   A+   +       D ++LI   + A  D  
Sbjct: 5   QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----IS 117
           +R+ N DGSE ++CGNG+RCV ++        S  F  ET+ G++ A  +  G+    ++
Sbjct: 63  MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           +DMG PIL  + IP+  +      +         L       VSMGNPH +F+V +++  
Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKERL---KGTAVSMGNPHVVFYV-NNIEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K   F EGVN+    V +   L+ R WERG G+T ACG+ ACA+VV+S 
Sbjct: 179 APLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSSV 238

Query: 238 CLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
              KT + V   V + GG L I W +  +V MTG A    +G
Sbjct: 239 LNEKTKKDVPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDG 280


>gi|15606880|ref|NP_214260.1| diaminopimelate epimerase [Aquifex aeolicus VF5]
 gi|6014911|sp|O67693|DAPF_AQUAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2984112|gb|AAC07649.1| diaminopimelate epimerase [Aquifex aeolicus VF5]
          Length = 279

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 32/296 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-------ITSDA--INALSTDDNTHFDQIMLIHDFQ 56
           ++F K++G GN  +VID R            ++ +       +       D ++LI +  
Sbjct: 1   MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHTGVGADGLILIKNPD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGS 115
           +   D      N DGS  + CGNG RC VRF   R        FET+ G++ A+   +G 
Sbjct: 61  NPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVGNKVRFETLAGVIKAEVYENGR 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
                  P    +   L    +++                    ++ G PH +  VE D+
Sbjct: 121 KVKVQLTPPSKPEEKTLTVDGEEVI----------------GVFINTGVPHFVVPVE-DV 163

Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233
              ++   G  +  H     +G N++  +  S +++ +RT+ERGV   T ACG+ A A  
Sbjct: 164 EKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACGTGATACA 223

Query: 234 VASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKW 286
           + S        + V+V    G  L I++ ++   VF+TG   K +EG+L  +  ++
Sbjct: 224 IVSYLKGLVKKKPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRLSEEVLEY 279


>gi|284113141|ref|ZP_06386598.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829694|gb|EFC34021.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3]
          Length = 289

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 122/282 (43%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  + +D +     +T+  I A+   +     D I+ +   ++A  D  +RI
Sbjct: 5   FFKGHGLGNDYIALDPKQLTFKLTAKTIRAICDRNWGVGSDGILALVPSKEA--DFGLRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKEN-----RDGSISVD 119
            N DGSE +  GNG+R    FL    + KR+SF+ ET  G++  +       +    +VD
Sbjct: 63  FNPDGSEAEKSGNGLRIFGCFLYATKKTKRRSFSVETKGGLVHVELTLDRNGQVNGATVD 122

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177
           MG      + +P      ++          +  F      VS+GNPH + F +       
Sbjct: 123 MGRASFRPRDLPCTIKAPELIMQPIKAVGQSLRFTG----VSVGNPHCVVFRDRGGSWTR 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL   G  L  HP F +  N+ +A  T   ++ +  WERG G T A GS+ACA   A  
Sbjct: 179 EDLLRMGPELETHPTFPKRTNVQLAVPTGPHAMSILIWERGAGETQASGSSACAVASAGV 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L      V V   GG L I       + + G   + ++G+ 
Sbjct: 239 RLGLVKSPVRVFAPGGRLDITVDAQYSLTLKGPVTEVYQGRF 280


>gi|228923674|ref|ZP_04086952.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835803|gb|EEM81166.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 280

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M     +     + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQISEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +        +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHAI FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEDETPFIRENFLYNNHRYAF----TAVSMGNPHAIIFVD-DVEKA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVA+  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +   V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGSVLMKGPAEVICRGVYE 275


>gi|224540097|ref|ZP_03680636.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518290|gb|EEF87395.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 270

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 20/280 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++ F KM G GN  + ++            ++   +       D ++LI     A  D
Sbjct: 2   TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +RI N DGSE + CGN  RC+    +      + + T +T+ GI + K + +      
Sbjct: 60  FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +         + + R  D  ++     G            +SMGNPH + FVE D+   +
Sbjct: 120 VT--------VDMGRPADMKEQPIEANG-----QKFTGTTLSMGNPHLVIFVE-DIKDIN 165

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L S G  L  HP+F + +N+  A+V     + +R WERG G+T ACG+ ACA+ VA+   
Sbjct: 166 LESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVAAALT 225

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
            K+ R   + M GG L IEW +  +HV+MTG A + ++G+
Sbjct: 226 GKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGE 265


>gi|297521684|ref|ZP_06940070.1| diaminopimelate epimerase [Escherichia coli OP50]
          Length = 224

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 9/230 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MGE
Sbjct: 61  RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  +   +P      + ++                 VVSMGNPH +  V+ D+    + +
Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+
Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAA 224


>gi|229124477|ref|ZP_04253662.1| Diaminopimelate epimerase [Bacillus cereus 95/8201]
 gi|228658817|gb|EEL14472.1| Diaminopimelate epimerase [Bacillus cereus 95/8201]
          Length = 280

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%)

Query: 11  MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           M G+GN  + ++M           + ++ ++ +  +     D ++LI     A V   +R
Sbjct: 1   MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119
           + N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +        +D
Sbjct: 57  MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKID 116

Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           MG P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+   
Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS  
Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 231

Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             K  R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYE 275


>gi|83814782|ref|YP_445539.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855]
 gi|83756176|gb|ABC44289.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855]
          Length = 285

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 20/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +S MV F KM+G GN  +V+D R      D +++ A            D ++ +   + +
Sbjct: 5   RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSIS 117
           + D  +  +N DGS    CGNG RC+ RF      +     F+T  G+  A         
Sbjct: 65  AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                P  +   + L        R    +       +R       G  H +  V+ DL  
Sbjct: 117 ---TAPENNPSGVRLFVPDITEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVVD-DLDA 172

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
             +  +G  L + P +   G N++   +   + L LRT+E+GV   T +CG+   A+   
Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +G L   +   +  V+  GG L +   +   +++ G A   ++G+++
Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279


>gi|222150097|ref|YP_002551054.1| diaminopimelate epimerase [Agrobacterium vitis S4]
 gi|254767087|sp|B9JUB9|DAPF_AGRVS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|221737079|gb|ACM38042.1| diaminopimelate epimerase [Agrobacterium vitis S4]
          Length = 303

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 143/291 (49%), Positives = 193/291 (66%), Gaps = 5/291 (1%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           V+FAKM G+GNKILV+DMRG  D +   A  AL+ +  THFDQIM IHD + A   A+I 
Sbjct: 5   VEFAKMNGLGNKILVVDMRGRADRVMPQAAIALAGNAETHFDQIMAIHDPKLAGTFAYID 64

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           IINCDG+  Q+CGNG RCVV+ L++    K+FTF+T+ GIL A E+ D ++SVDMG P+ 
Sbjct: 65  IINCDGTLAQACGNGTRCVVQALSAETGLKAFTFQTLAGILNAVEHDDRTVSVDMGSPVF 124

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           DW  IPL+  F    R    IGP++   L +P V+SMGNPHA+F+V+ D   YDL  FG 
Sbjct: 125 DWNRIPLSEEFHDTSRIELQIGPIDAPVLHSPAVMSMGNPHAVFWVDRDPMSYDLERFGP 184

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           LL  HP+F E  N+++A+VTS  ++  RTWERG GLT ACGSAACA+ V++    +  R 
Sbjct: 185 LLENHPLFPEKANITLAQVTSRTTMTTRTWERGAGLTLACGSAACAAGVSAARTGRAERK 244

Query: 246 VSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
           V++ +        L IEW + + HV MTG A+ EW G+LD +TG W ++ +
Sbjct: 245 VTITVASSPNRQALDIEWRERDGHVIMTGAAEWEWAGQLDPQTGDWQREQQ 295


>gi|206564585|ref|YP_002235348.1| putative epimerase [Burkholderia cenocepacia J2315]
 gi|198040625|emb|CAR56611.1| putative epimerase [Burkholderia cenocepacia J2315]
          Length = 270

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 18/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60
           + F KM   G+  +++D+RG   +    +  D +  +        F+Q+ +I        
Sbjct: 3   IAFQKMNANGDDFVIVDLRGRKHDRAHPVDGDLVQRMGDRHRGIGFNQLAVI--SDGDDA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +   N DGS + +CG+  R V   L       S    T RG L   ++ DG I V+M
Sbjct: 61  AARVAFWNPDGSALDTCGSATRGVAWKLMRETGAASIVLRTNRGRLHCSQDADGLIKVEM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P L W+ IP A + D +                 P   SMGNPH  FFV+ D    D+
Sbjct: 121 GAPRLGWQDIPFAEAADTLAL----------PLPGTPAACSMGNPHCTFFVD-DPDTLDV 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           A+ G  +  HP+F +  N+   RV     + LR WERG G+    GS +C +VV      
Sbjct: 170 AALGQAIEAHPLFPQKTNVHFVRVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRG 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             +  V V   GG + + W     VF++G     + G  
Sbjct: 230 LLDDTVRVTCDGGDVAVHWDGAGSVFLSGPVTAGFSGVW 268


>gi|150390553|ref|YP_001320602.1| diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF]
 gi|167012030|sp|A6TRX5|DAPF_ALKMQ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149950415|gb|ABR48943.1| Diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF]
          Length = 283

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  ++I              A            D +M++ +   A  D  
Sbjct: 3   IKFKKMHGTGNDFIMIYYEDYPFEQHFNQLAKEVCHRHFGIGADGLMIVKESSVA--DVQ 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE----NRDGSIS 117
           ++  N DGSE   CGNG+RC  +F+      K++ FT ET+ G+   +      +  S+ 
Sbjct: 61  MKYFNSDGSEAGMCGNGIRCFAKFVYDEGLVKKEIFTVETLSGVKELQVATVEEKVSSVR 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+ +LD K IP+     +   ++  I    +       V+       IF    DL  
Sbjct: 121 VNMGKMVLDPKQIPVNSEGLQFINEQLMIDGEKYTI---STVLLGVPHTIIFMETLDLD- 176

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G ++  H +F E  N++ A++ +  ++ +RTWERG G T ACG+   +    + 
Sbjct: 177 -RVKRVGKIIENHQLFPENTNVNFAQIINQNTIRVRTWERGAGYTLACGTGVSSVCGIAN 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            L      V V++ GG L IE      ++M G AK   +G 
Sbjct: 236 HLSLVGPNVVVEIEGGKLDIEIAPEGDIYMEGPAKDICKGV 276


>gi|317504661|ref|ZP_07962627.1| diaminopimelate epimerase [Prevotella salivae DSM 15606]
 gi|315664232|gb|EFV03933.1| diaminopimelate epimerase [Prevotella salivae DSM 15606]
          Length = 281

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 15/288 (5%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLI-HDFQDASV 60
           S+M+ F KM G GN  + ++           A  A S        D ++LI      +  
Sbjct: 2   STMIHFTKMHGAGNDYIYVNTLSEVIPQPEKAAIAWSRPHFGIASDGLVLIGKPSDTSQA 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN--RDGSI 116
           D  + I N DGSE   CGN  RC+ ++L  +    +K    ET+ GI +   +   +  +
Sbjct: 62  DFSMHIFNADGSEAMMCGNASRCIGKYLYEKGLTTQKDIRLETLSGIKILHLHLDANNHV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +    + +     +P   + +                 +    VSMGNPH + FV+ D++
Sbjct: 122 ASVTVDMLEPQFNVPEQFTGNHPSLSAI-------PGAQEGIFVSMGNPHYVIFVD-DIH 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL   G  L     F +  N+  A++T+  +L  R WERG G+T ACG+ ACA+  A+
Sbjct: 174 AIDLEKHGKRLENDATFPQRCNIEFAQLTATNTLHTRVWERGSGVTMACGTGACATATAA 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283
               +T R V++ M GG L +EW  DNNH++++G A   +EG + +  
Sbjct: 234 IQTQRTQREVTIDMDGGTLQVEWKADNNHIYLSGPAAFVFEGTIALPE 281


>gi|193213537|ref|YP_001999490.1| diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327]
 gi|193087014|gb|ACF12290.1| Diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327]
          Length = 264

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 30/284 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +VID R    N+  + ++A+         D ++LI   + A  D  +
Sbjct: 3   IEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETA--DFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMG 121
              N DG     CGNG RC V F      R     + FE   G   A+     S+ + M 
Sbjct: 61  NYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHML 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      +                    H    +   V  G+PHAI +V++        
Sbjct: 121 PPKNFRDDL--------------------HAGAWSCHFVDTGSPHAIAYVDNLDQMDVFT 160

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
               +     +F EG N++   VT+ ++L +RT+ERGV   T ACG+   A+ + S  L 
Sbjct: 161 EGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLG 220

Query: 241 KT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
           K  +  V V +  G  L++ ++D  + +++ G A+  ++G + +
Sbjct: 221 KVASSPVRVTVRSGETLMVGFNDAMDEIYLEGPARPVYQGTIAL 264


>gi|294507422|ref|YP_003571480.1| Diaminopimelate epimerase [Salinibacter ruber M8]
 gi|294343750|emb|CBH24528.1| Diaminopimelate epimerase [Salinibacter ruber M8]
          Length = 285

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 20/287 (6%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           +S MV F KM+G GN  +V+D R      D +++ A            D ++ +   + +
Sbjct: 5   RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSIS 117
           + D  +  +N DGS    CGNG RC+ RF      +     F+T  G+  A         
Sbjct: 65  AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                P  +   + L        R    +       +R       G  H +  V+ DL  
Sbjct: 117 ---TVPEDNPSGVRLFVPDVTEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVVD-DLDA 172

Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
             +  +G  L + P +   G N++   +   + L LRT+E+GV   T +CG+   A+   
Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232

Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +G L   +   +  V+  GG L +   +   +++ G A   ++G+++
Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279


>gi|237795342|ref|YP_002862894.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657]
 gi|229263101|gb|ACQ54134.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657]
          Length = 273

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A  + +G     + 
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             + +   I              +     +    +     MG PH I F   D Y     
Sbjct: 120 INMGEP--IFEGEKISNEKEKIINKSIRENNKEYSITAFHMGVPHTIIFGNLDEYDIGEG 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
                + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS  L  
Sbjct: 178 K---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASNLLGY 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T ++  V +  G L IE  +N  VFM G A   + G++D+
Sbjct: 235 TGKSTEVILPEGKLFIEIKEN-SVFMKGPADICFRGEIDV 273


>gi|153855191|ref|ZP_01996375.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814]
 gi|149752360|gb|EDM62291.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814]
          Length = 285

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 12/271 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
             G+GN  LV D       +    +  L   +     D ++             +++ N 
Sbjct: 8   YHGLGNDYLVFDPNHNELKLDEANVKMLCDRNEGLGADGVL--EGPILKEDGMHVKVWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPIL 125
           DGSE ++ GNG+R   ++L      +   F+   G    +          + V MG+   
Sbjct: 66  DGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEVTFLNEDGSRLRVSMGKLSF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+
Sbjct: 126 WSDEIPVIGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  L  TN  
Sbjct: 181 YSEIARYFPNRINTQIMQVIDKENIAIEIFERGAGYTRASGTGACAAAGVAYKLGLTNSK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           V V M GG L +E  D+ +V+MTG+     +
Sbjct: 241 VIVHMPGGELQVEVEDDWNVYMTGDVFYIAK 271


>gi|332702352|ref|ZP_08422440.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552501|gb|EGJ49545.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay]
          Length = 282

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 114/287 (39%), Gaps = 27/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTD-DNTHFDQIMLIHDF--QDASV 60
           + F KM+G GN  +VID R     + +  D   A+         D I  + +       V
Sbjct: 9   MPFVKMQGSGNDFVVIDNRDRRVPVEAMADWAKAVCRRAFGIGADGIFFLENPPADRPGV 68

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVD 119
           D      N DGS  + CGNG RC  R               T  G + A+    G + V 
Sbjct: 69  DFIWHFYNADGSRAEMCGNGSRCAARLAYLLGIAPARHVIGTDAGPVRAEVLDSGRVKVQ 128

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +         I L  +                        V+ G PH + FV+ D+   D
Sbjct: 129 LTPAKDARLDIALPAA----------------DKTLRAHFVNTGVPHTVIFVD-DVAKVD 171

Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237
           L   G  +  H     +G N + A+V   +++ LRT+ERGV   T ACG+ A A+V  S 
Sbjct: 172 LPDLGRTVRYHETFRPKGTNANFAQVVDKQTMLLRTYERGVEAETYACGTGASAAVYLSH 231

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  T   V+V   GG  L I    +N VF+ G A   + G L +++
Sbjct: 232 KLGLTGPEVNVTTSGGEQLTISVDGDN-VFLAGAATVTFTGDLLLES 277


>gi|168184899|ref|ZP_02619563.1| diaminopimelate epimerase [Clostridium botulinum Bf]
 gi|182672038|gb|EDT83999.1| diaminopimelate epimerase [Clostridium botulinum Bf]
          Length = 273

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 11/280 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM G GN  +V+D R         +    L     +   D I+ + +  D      
Sbjct: 1   MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
           + IIN DGS    CGNG+RC  +++  +  +K      ET  G+  A  + +G     + 
Sbjct: 60  MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             + +   I              +     +    +     MG PH I F   D Y     
Sbjct: 120 INMGEP--IFEGEKISNEKEKIINKSIRENNKEYSITAFHMGVPHTIIFGNLDEYDIGEG 177

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
                + + P+F EG N++   V     + ++TWERG G T ACG+ +CAS +AS  L  
Sbjct: 178 K---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASNLLGY 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           T ++  V +  G L IE  +N  +FM G A   + G++D+
Sbjct: 235 TGKSTEVILPEGKLFIEIKEN-SIFMKGPADICFRGEIDV 273


>gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
 gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
          Length = 289

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 138/288 (47%), Gaps = 15/288 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++      +   +    +S        D ++LI        D  +
Sbjct: 5   LRFTKMQGIGNDYVYVNGFEERVDNPGELAKRISDRHFGVGSDGLVLILPS--GVADLRM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD----GSISV 118
           R+ N DGSE + CGN  RCV ++        +     ET  GI + +   +       +V
Sbjct: 63  RMFNADGSEAEMCGNATRCVGKYAHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVRGATV 122

Query: 119 DMGEPILDWKLIPLARSF---DKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174
           DMGEP+L   LIP+  +    +  D  RF   PV           VSMGNPHA+ F++  
Sbjct: 123 DMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVEVGGRTYAVTAVSMGNPHAVVFMQG- 181

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL   G L   HP+F +  N     V S   + +R WERG G T ACG+ ACA+ V
Sbjct: 182 IDDLDLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLACGTGACAAAV 241

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           AS     T R++ V++ GG L I+W   ++HV+MTG A   ++G   I
Sbjct: 242 ASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDGVYFI 289


>gi|251777802|ref|ZP_04820722.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082117|gb|EES48007.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 273

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + I+   C      +    +         D ++++   +++S  A +
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCNRHFGIGADGLVIVRKSKNSS--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            IIN DGS    CGN +RC  +++          F    G  +       K+     + V
Sbjct: 59  VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPIETGDGIKEIELILKDENVEYVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P  +   IPL    + +D++             N   + MG PH I F +      
Sbjct: 119 YMGKPSFNGSDIPLNNLDELIDQEIAI-----GKEKYNMTSLLMGVPHTIIFEKH---KE 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G  + K  +F +G N+   +V     + + TWERG G T ACG+  CASVV +  
Sbjct: 171 YEVQEGENIEKFSLFKKGTNVDFVKVNDKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L       + VK  GG L++E  ++  V+M+G A+   +G +
Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271


>gi|307322646|ref|ZP_07601980.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
 gi|306891708|gb|EFN22560.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83]
          Length = 295

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 13/280 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----ASVD 61
            F KM G+ N  +++D R        + I  + + +     +Q++ I         A   
Sbjct: 18  PFVKMHGLENYFVILDRREVAKPFAVEDIVRICSTNVGAGGEQLLTIEGPSSEGRAAGAY 77

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A +RI N DG EV +CGN  RC+   L    + +    ET  G+L  +      ISV +G
Sbjct: 78  ATMRIFNVDGKEVGACGNATRCMAYLLLEETRTEEVVIETASGLLKCRRAGLRQISVTLG 137

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
              ++W+ +P +R  D +        P+    L +   + +GNPH +FFV+  ++     
Sbjct: 138 PISVNWQQLPTSREVDTL------HIPLKSGPLSDGVALYIGNPHVVFFVDRLVHDDIPL 191

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            F   +   P+F EGVN+ +A V    S+ L  WER   LT ACG+ AC +  A+     
Sbjct: 192 -FAPAIQNDPLFPEGVNVGVAEVIDAGSIRLAVWERPGILTKACGTGACVAAYAALKRGF 250

Query: 242 TNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            N   V V +  G L IE  +++ V MTG       G ++
Sbjct: 251 VNSTKVKVYLPAGELQIELIEHDMVVMTGPVAFCCHGYIE 290


>gi|317130097|ref|YP_004096379.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522]
 gi|315475045|gb|ADU31648.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522]
          Length = 288

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 140/286 (48%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G+GN+ + ++        + + + +I           D ++LI     A  D 
Sbjct: 1   MKFTKMHGLGNQYIFVNQFEEKLREEELVALSIEVSDVFTGIGSDGMILIGPSTVA--DL 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE------NRDG 114
            +RI N DGSE ++CGNG+RCV ++      + + S T ET+ GI+ A        N   
Sbjct: 59  QMRIFNKDGSEAKNCGNGLRCVAKYAYDNDLVNKLSMTIETLGGIVEASVEVNEETNTVT 118

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG P L+ K IPL              G            VSMGNPHA+FFV + 
Sbjct: 119 RVTVDMGVPRLEPKEIPL---LGTEKTPVIKEGIEVDNARHEMTAVSMGNPHAVFFV-NS 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  L + G  + KHP F + VN+   +  S   +  R WERG G+T ACG+ ACA+VV
Sbjct: 175 IENAPLTTLGPKIEKHPRFPDSVNVEFVQQVSTREMHFRVWERGSGITQACGTGACAAVV 234

Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           A+      K    V V + GG L I W  ++ V+MTG A+    G+
Sbjct: 235 AAVLNGFSKKGEEVLVHLAGGDLHITWDKDDRVWMTGPAETICIGE 280


>gi|319940772|ref|ZP_08015112.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B]
 gi|319805792|gb|EFW02568.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B]
          Length = 283

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 12/283 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+G GN  +V+D      N T   I AL+        DQ++L+   +        RI N 
Sbjct: 1   MQGAGNDFVVLDGIRQSINPTPKLIRALADRRFGIGADQVLLLEAAKHEGEPLRYRIFNN 60

Query: 70  DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            G EV+ CGNG RC+ RF             FET++G +  +   DG + VDMG P L  
Sbjct: 61  TGGEVEQCGNGARCIGRFALEAGYAAGDRVDFETMKGRICVRAEPDGRMVVDMGVPRLQP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNP-------FVVSMGNPHAIFFVEDDLYHYDL 180
             +P A   D     R             P         V MGNPHA  FV+  +  + +
Sbjct: 121 AEVPFAPEADSEMSKRCEHSADVWTIFCPPLSCDIEFTAVGMGNPHATIFVDG-VDSFPV 179

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
                 L    +F E VN+         +  +R +ERG G T ACG+   A++ +     
Sbjct: 180 EPVARFLQTSAIFPEDVNVGFVERIDSRTAKIRVYERGAGETLACGTGTSAAMASGCLRG 239

Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
             +  V     GG +   W      +++ G A+  + G + + 
Sbjct: 240 FFDDRVEFVARGGRIACAWRGPATSLYLIGPAEVVFVGTISLD 282


>gi|11498353|ref|NP_069581.1| diaminopimelate epimerase [Archaeoglobus fulgidus DSM 4304]
 gi|6014912|sp|O29511|DAPF_ARCFU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2649864|gb|AAB90492.1| diaminopimelate epimerase (dapF) [Archaeoglobus fulgidus DSM 4304]
          Length = 280

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 118/290 (40%), Gaps = 23/290 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  ++ID          +           +     D  + +   Q A  D
Sbjct: 3   IAFTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPSQKA--D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILV--AKENRDGSISV 118
              R  N DGSE   CGNG+RC  R++       +    ET+ GIL    K      + V
Sbjct: 61  VRFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAGERLRVETLAGILELEVKRENGWWVKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA-IFFVEDDLYH 177
           DMG+P    + IP        + +       +       +  + G PH  +F    D   
Sbjct: 121 DMGKPKFGREEIPAKTDVWGYEVE-------HDGRKFRIYAANTGVPHVAVFVDSLDFDI 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236
             LA          +F EG N++ A+    +++ +RT+ERGV   T +CG+ + A    +
Sbjct: 174 VPLARKIRYSE---IFPEGTNVNFAK-VDGDTITVRTYERGVEGETLSCGTGSVAVAAIA 229

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
             L  T   V V   GG L IE  ++   +MTG A + ++G L +   ++
Sbjct: 230 NRLGLTGSKVDVVTKGGLLKIELTED-TAYMTGGASRVFDGILRLNELRY 278


>gi|150016476|ref|YP_001308730.1| diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052]
 gi|149902941|gb|ABR33774.1| Diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052]
          Length = 275

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 19/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  + I+               L         D ++++   + A   A +
Sbjct: 1   MNFYKMQGAGNDFVFIEDFDNKIKDECLLAKKLCDRHFGIGADGLVIVRKSELA--HARM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI------LVAKENRDGSISV 118
            IIN DGS    CGN +RC  +++          F    G       ++ +      + V
Sbjct: 59  VIINADGSRANMCGNAIRCFGKYVYEHKIATGDKFSVETGDGIKEIEIILENENVKYVRV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG P  +   IPL  + + +      +    +        + +G PH I F  D    Y
Sbjct: 119 YMGNPSYNGCDIPLN-NLESLIEKEIAVDDKKYKM----TTLLLGVPHTIIFESD--REY 171

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++   G+ + K  +FSEG N++  ++     + + TWERG G T ACG+   ASVV +  
Sbjct: 172 NVIQEGSKIEKLDIFSEGSNVNFVKIVDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L     ++ + VK  GG L+IE    + V+M G A+  ++G+L +
Sbjct: 232 LGLVNKDKEIFVKAPGGELIIEVLGQD-VYMKGPAEVVFKGELSL 275


>gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
 gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
          Length = 287

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 20/287 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F+KM GIGN   +ID          +           +     D ++ +     A  D
Sbjct: 7   LKFSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFVVPSDVA--D 64

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115
              R+ N DGSE + CGNG+RC   F+       +++ T ET  GI   +   +      
Sbjct: 65  IGYRMFNPDGSEAEMCGNGIRCFGDFVYRNKIVEKETMTVETKSGIKTIEITVEDGEPVL 124

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V+MG+       IP+    D    +                 V++GNPHAI FV++ +
Sbjct: 125 FKVNMGKSTFKVPEIPMIADTD----EFVDGDLDVIDTTFKATCVNVGNPHAILFVDN-V 179

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              D+  +G  +  H +F E +N+    V S     +RTWERG G+T ACG+ A ++ +A
Sbjct: 180 DDIDIDKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACGTGATSTALA 239

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKL 279
              L   ++ V + + GG L  E + ++  +  FM G A   +  ++
Sbjct: 240 GVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPAALVFNAEI 286


>gi|206901683|ref|YP_002250495.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12]
 gi|206740786|gb|ACI19844.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12]
          Length = 286

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           MV+F K  G+GN  +V D    +  +T   I  +         D I+++      + +  
Sbjct: 1   MVEFVKSHGLGNDYIVFDKTQINFPLTEKNIRLICDRNRGVGSDGILVLEKI--NNQEFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSI 116
           +RI N DGSE +  GNG+R +    +       K F   T+ G + A        R  +I
Sbjct: 59  VRIFNPDGSEAEKSGNGIRILAKYIYDYKYTTEKEFFIYTLGGKVKASVIEEQNGRAKTI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+       IP+A    ++  +   I       +     +S+GNPH +FFV+ ++ 
Sbjct: 119 EVEMGKVTFRSSEIPVAGPEREVIDEELKING----EILKITCLSIGNPHCVFFVD-EID 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              + S G  +  +P+F   +N+ + +V     +++R WERG G T A GS++CA+  A+
Sbjct: 174 EEKIKSLGPKIENNPIFPNRINVQMVKVLDSNKIEIRIWERGAGYTLASGSSSCAAASAA 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 N  V V M GG L I  + +  V + G  ++ ++G+L
Sbjct: 234 YRKGLVNNQVEVIMPGGTLHIRINPDWSVNLIGPVEEVFKGEL 276


>gi|319945229|ref|ZP_08019491.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599]
 gi|319741799|gb|EFV94224.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599]
          Length = 309

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 93/296 (31%), Positives = 132/296 (44%), Gaps = 20/296 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           +   KM G GN  +VID       ++      L+        DQI+++            
Sbjct: 3   LRLTKMHGAGNDFVVIDATRGMPPVSLAQWRWLADRHVGVGADQILIVERPTAEQVAAAG 62

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114
              +D   RIIN DG EV+ CGNG RC VRF+  +    R      T  GI+  +   DG
Sbjct: 63  PEGLDFVYRIINADGIEVEQCGNGARCFVRFVHEQGLTDRDRIRVLTRGGIISPRLLPDG 122

Query: 115 SISVDMGEPILDWKLIPLA-------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            + V+MGEP  D   +P +       +    M            +F R   +VSMGNPHA
Sbjct: 123 GVEVNMGEPSFDPGRLPFSTRGLVPRQQGQAMLWPLALEASPGEVFTREVALVSMGNPHA 182

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +  VE D+    + + G L+  HP F   VN    +V S   + LR +ERG G T ACG+
Sbjct: 183 VQVVE-DVKQAPVQTEGRLIELHPRFPARVNAGFMQVLSRGEIALRVFERGAGETLACGT 241

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282
            ACA+ VA       +  V V+ LGG L I W      VF+ G A   +  ++++ 
Sbjct: 242 GACAAAVAGMQQGLLDHEVRVRALGGTLTIRWEGPGSPVFLAGPAVTVFSTEVELP 297


>gi|21241405|ref|NP_640987.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106739|gb|AAM35523.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 270

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 117/274 (42%), Gaps = 9/274 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D+R       +     L+        DQI+ I   +     A   I N 
Sbjct: 1   MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGIWNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGS  + CGNG RCV  +L      + + F  ++       +       +V MG P  + 
Sbjct: 61  DGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAVAMGVPQFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPLA         R       H        VSMGNPHA+  V   +    +   G LL
Sbjct: 121 TQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAAPVERVGALL 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            ++  F + VN+  A+V     + LR +ERGVG T ACGS ACA+        +  R V 
Sbjct: 176 QQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQRGRVERDVQ 235

Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280
           V + GG L I W  +   V M+G A   ++G+ +
Sbjct: 236 VSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 269


>gi|332880482|ref|ZP_08448156.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681470|gb|EGJ54393.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 268

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 20/279 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + ++                S        D ++LI   +    D  +
Sbjct: 3   IEFTKMHGAGNDYIYVNTLKYPLVQPETFAKEWSKPHTGIGSDGLVLIGPSEKG--DFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGN  RCV    +      +K    ET+ GI     +  G     +  
Sbjct: 61  RIFNADGSEAMMCGNASRCVGKYLYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSVTV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +   + I                   N    R    V+MGNPH + F   D+   DL S
Sbjct: 121 DMGAPRDIRTV-------------DLGNGYLFREGTTVNMGNPHLVIFT-HDVSAIDLLS 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP+F   VN+  A++    ++ +R WERG G+T ACG+ ACA+ VA+    + 
Sbjct: 167 EGPSMEHHPLFPNRVNVEFAQILPDGNIRMRVWERGSGITQACGTGACATAVAAAFTGRG 226

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
                + M GG L IE+   N+ + MTG A K ++G ++
Sbjct: 227 KGKTDIIMDGGTLTIEYQPQNDRILMTGPATKVFDGTIN 265


>gi|182625660|ref|ZP_02953429.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721]
 gi|177909062|gb|EDT71537.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721]
          Length = 272

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 20/281 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI+            I             D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +   K    + + G       L  ++++  SI+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIEKDKVKSIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP        D +                 + MG PH I F       
Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                FG  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 170 KYPIEFGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            L   ++ V V + GG L +   D+  V M G A    +G 
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269


>gi|255004774|ref|ZP_05279575.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str.
           Virginia]
          Length = 265

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 128/275 (46%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF KM    N  ++ID R     +  D             DQ++ I    D   D  I 
Sbjct: 1   MDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +                 P  V+MGN H +FFV   +    L   G 
Sbjct: 119 AWQDIPIAHECDTLKVPLLV------PKYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265


>gi|255003649|ref|ZP_05278613.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Puerto
           Rico]
          Length = 265

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF KM    N  ++ID R     +  D             DQ++ I    D   D  I 
Sbjct: 1   MDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 119 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265


>gi|75908333|ref|YP_322629.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
 gi|75702058|gb|ABA21734.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
          Length = 285

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 127/278 (45%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K   +GN  LVI+ +    ++T + I  +         D  +L+           +
Sbjct: 1   MKFYKYHALGNDYLVINPQDLKFSLTPEKIKIICHRNFGIGSDG-ILLGPLASTKAQFAL 59

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI N DGSE +  GNG+R      +    +    F+ ET+ G++ +     G  + V+MG
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDENPFSIETVGGLVESAIKDAGKTVQVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++ +++  +       +      ++GNPH +  ++ D+      
Sbjct: 120 KVSFWSRDIPVVGDDREVIQEKIFLD----EGIFTFCAATIGNPHCVILLD-DINADVAR 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +FG +    P+F    N+   +V    ++ +  WERG G T A GS++ A+   +  L  
Sbjct: 175 NFGPIFEVFPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +  + V+M GG +LI+  D+ H+ MTG   K  +G+L
Sbjct: 235 CDSEIIVQMPGGDILIQIKDDFHISMTGFVTKVAQGEL 272


>gi|126180100|ref|YP_001048065.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1]
 gi|125862894|gb|ABN58083.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1]
          Length = 272

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 26/284 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           + F K++G GN  ++ID       I  D     A            D ++ +     A  
Sbjct: 3   IAFTKLQGNGNDFVLIDEHDGEV-IPEDMKGAFAALFCDRRFGIGADGVLFLQASDKA-- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGS---I 116
           D  +R++  D SE   CGNG+RC+ ++       K   + ET  GI+             
Sbjct: 60  DVRMRLLQPDESEAAMCGNGIRCLAKYAYDAGYVKESCSVETGAGIVQVSAGYADDEFTA 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           ++ M  P  +   IP A + +              +     +  + G PHA+ FV+ ++ 
Sbjct: 120 TITMPAPAFERSAIPAAGNGEYK----------EEIRNFTVYAANTGVPHAVVFVK-EIG 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
             D+A+ G  +  HP F EG N++       +++ +RT+ERGV   T +CG+ A AS   
Sbjct: 169 AVDIAAVGPAIRNHPSFVEGANVNFVEEAGNDTIRIRTFERGVEGETESCGTGATASAAV 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  L K    V V+  GG L+I + +   V M G A+  + G +
Sbjct: 229 AHHLGKVGDTVRVETKGGPLVIRFGE--TVTMEGPAETVFSGVI 270


>gi|18310828|ref|NP_562762.1| diaminopimelate epimerase [Clostridium perfringens str. 13]
 gi|20141431|sp|Q46185|DAPF_CLOPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|18145510|dbj|BAB81552.1| diaminopimelate epimerase [Clostridium perfringens str. 13]
          Length = 272

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI+            I             D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +   K    + + G       L  + ++  +I+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP        D +                 + MG PH I F       
Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 170 KYPIECGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            L   ++ V V + GG L +   D+  V M G A    +G 
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269


>gi|168206100|ref|ZP_02632105.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987]
 gi|168214420|ref|ZP_02640045.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969]
 gi|169343508|ref|ZP_02864507.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495]
 gi|169298068|gb|EDS80158.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495]
 gi|170662468|gb|EDT15151.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987]
 gi|170714130|gb|EDT26312.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969]
          Length = 272

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI+            I             D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +   K    + + G       L  + ++  SI+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP        D +                 + MG PH I F       
Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 170 KYPIECGREIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            L   ++ V V + GG L +   D+  V M G A    +G 
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269


>gi|110799448|ref|YP_696529.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124]
 gi|168210791|ref|ZP_02636416.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC
           3626]
 gi|168215474|ref|ZP_02641099.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239]
 gi|110674095|gb|ABG83082.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124]
 gi|170711105|gb|EDT23287.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC
           3626]
 gi|182382188|gb|EDT79667.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239]
          Length = 272

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI+            I             D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +   K    + + G       L  + ++  SI+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP        D +                 + MG PH I F       
Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 170 KYPIECGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            L   ++ V V + GG L +   D+  V M G A    +G 
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269


>gi|110803272|ref|YP_699129.1| diaminopimelate epimerase [Clostridium perfringens SM101]
 gi|110683773|gb|ABG87143.1| diaminopimelate epimerase [Clostridium perfringens SM101]
          Length = 272

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+KM G GN  +VI+            I             D I+++   ++ + D  
Sbjct: 1   MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117
           + IIN DGS    CGNG+RC  +++  +   K    + + G       L  + ++  +I+
Sbjct: 59  MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG      K IP        D +                 + MG PH I F       
Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  + K+ +F +G N++  +V    ++++RTWERG G T ACG+  CASV+A+ 
Sbjct: 170 KYPIECGKDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            L   ++ V V + GG L +   D+  V M G A    +G 
Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269


>gi|298209117|ref|YP_003717296.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559]
 gi|83849044|gb|EAP86913.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559]
          Length = 261

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 35/283 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V+F K +G GN  ++ID R  +   N T               D ++ + +      D  
Sbjct: 3   VEFYKYQGTGNDFVIIDNRRYNLSKNDTKTIKLLCDRRFGIGADGLIFLENSGIEGEDFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F       +  T F  I G   A              
Sbjct: 63  MVYFNSDGNESTMCGNGGRCLVSFAHYLNIFEKETLFSAIDGQHEASITNG--------- 113

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                      N   L N   ++ G+PH +    D L       
Sbjct: 114 -----------------VVSLKMQDVSNIETLENALYLNTGSPHYVTLTSDILNKNIKVD 156

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +        EG N++     +     +RT+ERGV   T +CG+   A  +A   L K
Sbjct: 157 GAAIRYNDRFKKEGTNVNFVEPITANLYRVRTYERGVEDETLSCGTGVTAVAIAMHALSK 216

Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           T+  +V + + GG L + ++ NN    +V++TG A++ ++G++
Sbjct: 217 TDKNSVDLIVQGGSLNVAFNTNNGTYTNVWLTGPAEQVFKGEV 259


>gi|188589635|ref|YP_001921574.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499916|gb|ACD53052.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 273

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/282 (27%), Positives = 124/282 (43%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + I+   C      + A            D ++++   + +S  A +
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSKKSS--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGIL----VAKENRDGSISV 118
            IIN DGS    CGN +RC  +++          F+ ET  GI     + K+     + V
Sbjct: 59  VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFSIETEDGIKEIELILKDENVEYVKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P  +   IPL    + +D++             N   + MG PH I F        
Sbjct: 119 YMGKPSFNGSDIPLNNLDELIDQEVAI-----GKEKYNMTSLLMGVPHTIIFENH---KE 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G  + K  +F +G N+   +V +   + + TWERG G T ACG+  CASVV +  
Sbjct: 171 YEVQEGENIEKFSLFKKGTNVDFVKVNNKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L       + VK  GG L++E  ++  V+M+G A+   +G +
Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271


>gi|223940625|ref|ZP_03632468.1| Diaminopimelate epimerase [bacterium Ellin514]
 gi|223890706|gb|EEF57224.1| Diaminopimelate epimerase [bacterium Ellin514]
          Length = 269

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 25/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +++D R     +  +    L         D IML+        D   
Sbjct: 3   LEFNKMNGAGNDFVLVDNRERKVKLRPEQAVQLCHRQRGIGADGIMLLVPCVSGKADWAW 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS  + CGNG RC  RF+         FTFET  GI+ A               
Sbjct: 63  DFYNSDGSVAEMCGNGARCFARFVQKLTGINSQFTFETGAGIITASFQG----------- 111

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   I L +  D    ++  +             ++ G PHA+ FV D      L+  
Sbjct: 112 --ERVTIGLTKPRDLRLNEQVTLSVGAQPI----HSLNTGVPHAVLFVPDADKAMVLSLG 165

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
             +        +G N++  +     ++ +RT+ERGV   T ACG+   AS + S  L+  
Sbjct: 166 QEIRRHAHFAPKGTNVNFVQQLGNGAIRVRTFERGVEGETLACGTGVTASALISAELNGF 225

Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
              + V++ GG  L + + +N      V +TG A   +EGK+ I
Sbjct: 226 KSPIQVQVQGGDLLEVSFKENGGHFEDVKLTGPADFVFEGKVTI 269


>gi|119356065|ref|YP_910709.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266]
 gi|119353414|gb|ABL64285.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266]
          Length = 266

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 31/286 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F+K+ G GN  ++ID R    ++T   INAL         D ++L+        D  +
Sbjct: 3   INFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGADGLILVEPSLH--CDFTM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
           +  N DG     CGNG RC V F   +     + + F+FE       A+     ++ + M
Sbjct: 61  KYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEANSNRYDAEVTNSETVRLHM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +                             +       V+ G+PH + F +D       
Sbjct: 121 LDAR--------------------DFRYHMEIEGFACTFVNTGSPHVVIFADDINAINVA 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                +      F EG N++   +TS  S+ LRT+ERGV   T ACG+ A A+ + S  L
Sbjct: 161 EKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIISRKL 220

Query: 240 HK-TNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
            K    +V V +  G  L + + +N  ++ +TG AK  ++G + I 
Sbjct: 221 GKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP 266


>gi|56417293|ref|YP_154367.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries]
 gi|222475657|ref|YP_002564074.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida]
 gi|56388525|gb|AAV87112.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries]
 gi|222419795|gb|ACM49818.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida]
          Length = 277

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           VDF KM    N  ++ID R     +  D             DQ++ I    D   D  I 
Sbjct: 13  VDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 70

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 71  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 130

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 131 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 183

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 184 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 243

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 244 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 277


>gi|210622382|ref|ZP_03293135.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275]
 gi|210154264|gb|EEA85270.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275]
          Length = 277

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 129/286 (45%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMR---GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R         +S A+   +   +   D ++++ +   A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRNDGKSPSEYSSLALQVCNRRMSVGADGLLVVKNSNVA--DI 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----S 115
            +   N DGS    CGNG+RC  RF+     +  + F  +T+ GI     N        +
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCRFVYDNHIVNEREFDVDTLAGIKHVTVNTSDLGDVIN 118

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I VDMGE       IP+A   +K   ++ HI   +         V       +F  E DL
Sbjct: 119 IKVDMGEGSFKTSDIPMATDKEKFIEEKVHILDRDFTMTSMLMGV---PHTIVFVDEFDL 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +  +G  +    +F E  N++  +V    ++++ TWERG G T  CG+   A+ V 
Sbjct: 176 E--MIEKYGPAIENCDLFPEKTNVNFVKVRDKYNINVYTWERGCGYTLGCGTGMTAAAVV 233

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              L KT ++++V   GG + I+    + VFMTG A K  EG L++
Sbjct: 234 CNYLEKTEKSMNVTSKGGTVKIDI--GDKVFMTGPAVKICEGYLEV 277


>gi|88603562|ref|YP_503740.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1]
 gi|88189024|gb|ABD42021.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1]
          Length = 274

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/287 (26%), Positives = 115/287 (40%), Gaps = 26/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  ++ID               A            D ++ +    D    
Sbjct: 3   IPFVKLHGNGNDFILIDEYAGEKIPDDMKGHFAAVYCDRKFGIGGDGVLFLLKSNDG--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDG----SI 116
             +R+   D SE + CGNG+RC+ ++       K   T +T+ G ++ +   D       
Sbjct: 60  IRMRLFQPDESEAEMCGNGIRCLAKYAFDAGYVKSPCTIQTLAGPVMVRMEYDEDGDFMA 119

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+M  PI +   IP     D              +     F V+ G PHA+ FV  DL 
Sbjct: 120 EVEMTPPIYESPGIPAKGKGDF----------HEIINGYEVFAVNTGVPHAVIFVR-DLD 168

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
             DL      +     F  G N++   +T   S+ +RT+ERGV   T +CG+ A AS   
Sbjct: 169 SLDLIKMAPPIRHSQFFPSGANVNFVEITGENSIQIRTFERGVEAETLSCGTGATASAAI 228

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +  L KT   V V+ +GG L I   D    FM G A   + G L + 
Sbjct: 229 AYRLSKTGPVVEVETIGGPLTITIKDG--AFMKGPADTVFTGMLHLD 273


>gi|330997536|ref|ZP_08321383.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841]
 gi|329570394|gb|EGG52125.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841]
          Length = 268

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 20/279 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  + ++      +         S        D ++LI   +    D  +
Sbjct: 3   IEFTKMQGAGNDYIYVNTLKYPVSHPEALAKEWSKPHTGIGSDGLVLIGPSETG--DFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGN  RCV    +      +K    ET+ GI     +  G     +  
Sbjct: 61  RIFNADGSEAMMCGNASRCVGKYVYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSVTV 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +     I                   N    R    V+MGNPH + F   D+   DL S
Sbjct: 121 DMGAPCDIRTV-------------DLGNGYLFREGTAVNMGNPHLVIFT-HDVSAIDLLS 166

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  +  HP+F   VN+  A+V    ++ +R WERG G+T ACG+ ACA+ VA+    + 
Sbjct: 167 EGPAMEHHPLFPNRVNVEFAQVLPDGNVRMRVWERGSGITQACGTGACATAVAAAFTGRG 226

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
                + M GG L IE+   N+ + MTG A K ++G ++
Sbjct: 227 KGKTDIIMDGGTLTIEYEPQNDRILMTGPATKVFDGTIN 265


>gi|284161385|ref|YP_003400008.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631]
 gi|284011382|gb|ADB57335.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631]
          Length = 279

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 15/279 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVD 61
           ++F KM G GN  ++ID        DN  S+ +            D  + +     A  D
Sbjct: 1   MEFVKMHGNGNDFVLIDEFESVKVPDNRKSEFVRVVCDRRFGVGGDGAIFVQKSDIA--D 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
           A     N DGS  + CGNG+RC  R++  R   K    +      V K +        + 
Sbjct: 59  AKFVFYNSDGSRAEMCGNGIRCFARYIVERGYAKPGVVKVETLAGVLKLDVWFDEMWWIR 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   K      +   +  + F I           + V+ G PHA+ FV+D  + +   
Sbjct: 119 VNMGRPKFGKDVPALKDVWGEVFEIDGRKFE----VYAVNTGVPHAVIFVDDFDFDFY-- 172

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
                +    +F EG N++ A+V S  S+ +RT+ERGV   T +CG+ +CA  V    L 
Sbjct: 173 KVAREIRYSKLFPEGTNVNFAKVLSRNSVFVRTYERGVEDETLSCGTGSCAVAVVGNRLG 232

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ++ V V+  GG L IE   N+ ++M G A K +EG+L
Sbjct: 233 ILDKVVEVQTKGGILKIEV--NDEIYMNGTAAKVFEGRL 269


>gi|332290831|ref|YP_004429440.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168917|gb|AEE18172.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 258

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 39/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K +G GN  ++ID R  +     T               D +ML+ +   A  D  
Sbjct: 3   IPFSKYQGTGNDFVIIDNRTQYFPKDDTKLISKLCDRKFGIGADGLMLLENHPSA--DFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F  +  +   + TFE I G+  A              
Sbjct: 61  MVYYNADGNESSMCGNGGRCLVAFAKALSIIENNATFEAIDGLHEA-------------- 106

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                       S +                      +  G+PH I  V+ D+   ++ +
Sbjct: 107 ------------SIEGDIVQLKMQDVSKIKKEPTYTFLDTGSPHHIAMVD-DVEKVNVKA 153

Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  L         G N++  +        +RT+ERGV   T +CG+   A  +A+    
Sbjct: 154 EGAALRYGSLYGEAGSNINFVQQLDNAHFAVRTYERGVEDETLSCGTGVTAVAIAAHTNG 213

Query: 241 K-TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
             T+  V++ + GG L +++   N    ++++ G A   ++G+ 
Sbjct: 214 LTTSNKVALDVQGGKLSVQFEKTNDGYSNIYLIGPATFVFKGEW 257


>gi|89890574|ref|ZP_01202084.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7]
 gi|89517489|gb|EAS20146.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7]
          Length = 260

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 110/285 (38%), Gaps = 37/285 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R    +      I  L         D ++L+ +    + D  
Sbjct: 4   IHFYKYQGTGNDFVMIDNRDLSFSKNDTKLIELLCDRKFGIGADGLILLENH--PTADFK 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG E   CGNG RC+VRF     +  +  TFE I G+  AK             
Sbjct: 62  MVYFNADGKESTMCGNGGRCLVRFAQFLEIISQDATFEAIDGMHHAKV------------ 109

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                         D                  +    + G+PH +   E +L   D+  
Sbjct: 110 -------------IDATAISLQMSDVTEMRIENSYVYTNTGSPHHVQLTE-NLADLDVYQ 155

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  L  +     G N++  ++T  E+  +RT+ERGV   T +CG+   A  +A    + 
Sbjct: 156 EGKYLRNNIYGKTGANINFVQLTDRETFKVRTYERGVEDETLSCGTGVTAVAIAMHKTNH 215

Query: 242 TN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
           TN   V ++  GG L + +        ++++ G A   ++G   I
Sbjct: 216 TNANEVKLETPGGTLKVSFEASETGYKNIWLIGPALSVFKGTFTI 260


>gi|167465423|ref|ZP_02330512.1| Diaminopimelate epimerase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 249

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 17/254 (6%)

Query: 36  NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK 95
              +       D ++ I   +++  D  +RIIN DGSE + CGN +RCV +++      +
Sbjct: 2   RLCNRHFGIGADGLVYILPSKES--DFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLVE 59

Query: 96  SFTFETI---------RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
               E           R  +  K+ +  ++ VDMGEPIL+   IP   + + + +    +
Sbjct: 60  HQNDEITIQTIGAGIQRVFVHKKDGKVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVEV 119

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                 F      VSMGNPH + +V+D +   +L  +G LL  HP+F + +N+  A V S
Sbjct: 120 NGRRFQF----TAVSMGNPHCVIYVDDAV-TMNLHEWGPLLEVHPLFPKKINVEFATVQS 174

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHV 265
            + + +R WERG G T ACG+ ACA++VAS   + T+R  ++ + GG L IEW++ +NHV
Sbjct: 175 RDRVIMRVWERGAGPTLACGTGACATLVASVLNNLTDRRATISLKGGDLFIEWNEADNHV 234

Query: 266 FMTGEAKKEWEGKL 279
           +MTG A + ++G+L
Sbjct: 235 YMTGPAAEVFQGRL 248


>gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
 gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
          Length = 298

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 120/270 (44%), Gaps = 15/270 (5%)

Query: 21  IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +D R          DAI     +     D ++          D  +RI N DGSE + CG
Sbjct: 26  VDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ-GCDYSMRIYNSDGSEPEMCG 84

Query: 79  NGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
           NG+RC+ RF+         +S+   T+ G ++ +   DG ++VDMG P L    +P    
Sbjct: 85  NGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVAVDMGPPTLKGAEVPTKLP 144

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLA 188
            +  D        V          VSMGNPH + F E D       +    L   G L  
Sbjct: 145 VN-ADGAVVKQPLVVDGRTWLVTCVSMGNPHCVTFGEQDAKGVIKHVNKLPLEKIGPLFE 203

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
            H +F    N    +V S   L +R WERG G T ACG+ ACA VVA+    +  R   V
Sbjct: 204 HHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGACAVVVAAVLEGRAQRRCVV 263

Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
            + GG L IEW + NNHV+MTG AK  + G
Sbjct: 264 DLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293


>gi|298373396|ref|ZP_06983385.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274448|gb|EFI16000.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 278

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 16/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  + +D  R   DN    A+           D ++LI     A  D  +
Sbjct: 1   MKFVKMHGAGNDYVFVDCFRQQVDNPERLAVAVSDRHFGIGSDGLVLIMPSDKA--DCRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
           R+ N DGSE   CGN +RCV ++    +     T  T     +        +     + V
Sbjct: 59  RMFNADGSEGMMCGNAIRCVGKYFFENIDSTKTTITTETASGIKRLELTVVKGAVECVGV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG      K +P     D+                 N  V+SMGNPH + FV+ D+  +
Sbjct: 119 DMGRADFAVKNVPFVCDEDEFIASELRADNR----TFNATVLSMGNPHCVVFVD-DVDAF 173

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           ++  +G  +  +P+F E VN+    +   +++ +R WERG G T ACG+ ACASV A+  
Sbjct: 174 NVEHYGRAIENNPLFPERVNVEFVEIVDKDTIKMRVWERGSGCTLACGTGACASVAAAAR 233

Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 +  + V++LGG L ++   +  + M G A + + G  ++
Sbjct: 234 NTFLPMDTEICVRLLGGDLWVKCASDYTMTMRGNAVEVFRGDYEL 278


>gi|269958317|ref|YP_003328104.1| diaminopimelate epimerase [Anaplasma centrale str. Israel]
 gi|269848146|gb|ACZ48790.1| diaminopimelate epimerase [Anaplasma centrale str. Israel]
          Length = 265

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F KM    N  ++ID R   D     A  A         DQ++ I    D S D  I 
Sbjct: 1   MNFIKMHSNANDFVIIDRRNTGDAAIDYAAIA-HRKTGVGCDQVVTIDRS-DGSTDCTIT 58

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +       +VA++   G I V++G P L
Sbjct: 59  IHNPDGSQAAMCGNAAMCVGKLLMDELGTISTSITIGDRTVVAEKVPTGRIRVNLGSPKL 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+AR  D +        P++      P  V+MGNPH +FFV   +    L   G 
Sbjct: 119 AWQDIPIARECDTLQI------PLSIPGYPQPVGVNMGNPHVVFFV-ASVKDCKLEELGP 171

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    MF +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 172 LVEHDSMFPQRTNVCVAEVVTRNQITLRVWERGTGETCSCGSGSCAALIAGVRLGATERK 231

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + M GG LL EW ++    ++    + + G L
Sbjct: 232 CVITMPGGSLLTEWQESGDTVVSSGVTESFRGVL 265


>gi|254995458|ref|ZP_05277648.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str.
           Mississippi]
          Length = 268

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           VDF KM    N  ++ID R     +  D             DQ++ I    D   D  I 
Sbjct: 4   VDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DGS+   CGN   CV + L   +   S +      +++A++++ G I V++G+P L
Sbjct: 62  IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ IP+A   D +        P++      P  V+MGN H +FFV   +    L   G 
Sbjct: 122 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
           L+    +F +  N+ +A V +   + LR WERG G T +CGS +CA+++A   L  T R 
Sbjct: 175 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 234

Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            +V M GG LL EW +  + V  +G   + + G L
Sbjct: 235 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 268


>gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 271

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/270 (30%), Positives = 118/270 (43%), Gaps = 13/270 (4%)

Query: 20  VIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           ++D R          +A      +     D ++ +    +   D  +RI N DGSE + C
Sbjct: 1   MVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYTMRIFNSDGSEPEMC 59

Query: 78  GNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
           GNG+RC  RF+    +     SF   T  G+++ +   DG + VDMG+PIL    IP   
Sbjct: 60  GNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKL 119

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----LYHYDLASFGNLLAK 189
                +                   VSMGNPH + F   +     +    L+  G     
Sbjct: 120 PS-TKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEH 178

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           H MF    N     V S   L +R WERG G T ACG+ ACA VVA+    +  R   V 
Sbjct: 179 HEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVD 238

Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278
           + GG L IEW + +NH++MTG A+  + G 
Sbjct: 239 LPGGPLEIEWREDDNHIYMTGPAEAVFYGS 268


>gi|187932919|ref|YP_001886617.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B]
 gi|187721072|gb|ACD22293.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B]
          Length = 273

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 123/282 (43%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + I+   C      + A            D ++++   +++S  A +
Sbjct: 1   MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSENSS--AKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118
            IIN DGS    CGN +RC  +++          F    G  +       ++++   I V
Sbjct: 59  VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPVETGDGIKEIELILRDDKVEYIKV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+P  + + I L    + +D++             N   + MG PH I F        
Sbjct: 119 YMGKPSFNGRDISLNNLEELIDKEVVI-----DKEKYNMTSLLMGVPHTIIFER---DKE 170

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G  + K  +F EG N+   +V     + + TWERG G T ACG+  CASVV +  
Sbjct: 171 YEVQEGEKIEKFSLFKEGTNVDFVKVNDENHIRVNTWERGAGATLACGTGCCASVVVAKK 230

Query: 239 LHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L   N   + VK  GG L+IE  ++  V+M+G A+   +G +
Sbjct: 231 LGYVNGENIFVKAPGGNLIIEVLEDG-VYMSGPAEFICKGNI 271


>gi|194337676|ref|YP_002019470.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310153|gb|ACF44853.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 268

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 33/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +VID R    ++T   IN L         D ++LI     A+    +
Sbjct: 3   ITFTKLSGAGNDFIVIDNRALAIHLTPLQINKLCTRRTGIGADGLILIEPS--ATFSFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVDM 120
           +  N DG     CGNG RC V F  +         ++TFE       A    + ++ + M
Sbjct: 61  KYHNADGFLGSMCGNGGRCAVYFAFTIGIPAASGNAYTFEANGNRYDAWVLGEENVKLKM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P    + + L                         F ++ G+PHAI ++  DL   D+
Sbjct: 121 LAPQGFKENLDLEGE--------------------QCFALNTGSPHAIIYIS-DLDAVDV 159

Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G+ +      F +G N++   +TS  SL LRT+ERGV   T ACG+ A A+ + S  
Sbjct: 160 NKKGSAIRHRTDFFPDGTNVNFIEITSPNSLALRTFERGVEEETLACGTGAVAAALMSHK 219

Query: 239 LHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
           L K +   V V +  G  L +E++++ + VF++G AK  +EG   I+
Sbjct: 220 LGKISSTTVQVTVKSGDTLEVEFNESMDEVFLSGPAKIIYEGSFTIE 266


>gi|154687329|ref|YP_001422490.1| diaminopimelate epimerase [Bacillus amyloliquefaciens FZB42]
 gi|166224240|sp|A7Z8D3|DAPF_BACA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|154353180|gb|ABS75259.1| DapF [Bacillus amyloliquefaciens FZB42]
          Length = 284

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++          +   A+   S       D ++LI   + A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F  ET+ G++ A    D      ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITEDNGIVREVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K +P+  + D+   D   +     L   +   VSMGNPH +F V  D+  
Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTIDETFVFGETEL---SGTAVSMGNPHIVFPV-ADINQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EGVN+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +  NR ++V + GG L+I W DN HV MTG A+    G   +
Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284


>gi|238064056|ref|ZP_04608765.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
 gi|237885867|gb|EEP74695.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
          Length = 306

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 15/284 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIML--IHDFQDASVD 61
           M  F K + +GN  +VID R      T  DA+     +     D ++   I     AS  
Sbjct: 1   MTHFTKYQALGNDYVVIDPRDVAFEPTGQDALLLCDRNFGIGADGVLYGPIGPV-HASRP 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE--NRDGSIS 117
             +RI N DGSE +  GNG+R     + +R     + FT  T+ G    +      G +S
Sbjct: 60  VQLRIFNSDGSECEKSGNGIRIFALHVAARHLPGVREFTVRTLSGDSSVRIVDQPAGVVS 119

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MGEP  +   +P+             +             +++GNPHA+   E     
Sbjct: 120 VGMGEPCFEAAAVPMLGITGLAVEQPLLVDGRQ----LTVTALNLGNPHAVVLTEH-PTR 174

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
               + G L+A+H  F    N+   RV    ++ +  WERG G T A GS+ CA+   + 
Sbjct: 175 ELACALGPLIAEHERFPTRTNVQFLRVLDRRTIQIEVWERGAGYTLASGSSGCAATAVAH 234

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L + +    ++V+M GG + +    +  V MTG A+    G L
Sbjct: 235 RLGQVDTGAEITVRMAGGEIGVTVAPDGTVTMTGSAEHVLSGTL 278


>gi|254976182|ref|ZP_05272654.1| diaminopimelate epimerase [Clostridium difficile QCD-66c26]
 gi|255093571|ref|ZP_05323049.1| diaminopimelate epimerase [Clostridium difficile CIP 107932]
 gi|255315316|ref|ZP_05356899.1| diaminopimelate epimerase [Clostridium difficile QCD-76w55]
 gi|255517983|ref|ZP_05385659.1| diaminopimelate epimerase [Clostridium difficile QCD-97b34]
 gi|255651099|ref|ZP_05398001.1| diaminopimelate epimerase [Clostridium difficile QCD-37x79]
 gi|260684164|ref|YP_003215449.1| diaminopimelate epimerase [Clostridium difficile CD196]
 gi|260687823|ref|YP_003218957.1| diaminopimelate epimerase [Clostridium difficile R20291]
 gi|306520950|ref|ZP_07407297.1| diaminopimelate epimerase [Clostridium difficile QCD-32g58]
 gi|260210327|emb|CBA64658.1| diaminopimelate epimerase [Clostridium difficile CD196]
 gi|260213840|emb|CBE05832.1| diaminopimelate epimerase [Clostridium difficile R20291]
          Length = 276

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N        I
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P+  + ++  ++   +             V       +   E D+ 
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSMLMGV---PHTVVIVDELDVD 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +  
Sbjct: 176 D--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGVLEV 276


>gi|120434983|ref|YP_860669.1| diaminopimelate epimerase [Gramella forsetii KT0803]
 gi|117577133|emb|CAL65602.1| diaminopimelate epimerase [Gramella forsetii KT0803]
          Length = 262

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 111/285 (38%), Gaps = 38/285 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R    +     +             D ++L+ + +D   D  
Sbjct: 3   LKFYKYQGTGNDFVMIDNRDKEVSKNDTKLINHLCDRKFGIGADGLILLENSEDPEDDFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F       K    F  I G+  A              
Sbjct: 63  MVYFNADGNESSMCGNGGRCLVAFANFLGIIKDSARFTAIDGVHKA-------------- 108

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                       S +            +     +   +  G+PH I F E ++   D+  
Sbjct: 109 ------------SIEGDVVSLKMQNVESISENEDFIFLDTGSPHHILFTE-NVNKVDIKK 155

Query: 183 FGNLLAKHPMFS--EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            G+ +     +    G N++     + ++  +RT+ERGV   T +CG+   A  +A+   
Sbjct: 156 EGSAIRYSERYKANNGTNVNFVEAIAKDTFSVRTYERGVEDETLSCGTGVTAVALAAFKS 215

Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
            KTN   V +   GG L + + +       V+++G A+  ++G++
Sbjct: 216 SKTNSNKVKLVTPGGKLSVSFKETEKGFSDVWLSGPAEFVFKGEI 260


>gi|291459953|ref|ZP_06599343.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417294|gb|EFE91013.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 276

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 18/284 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  + +D          +    +S        D ++LI        DA++
Sbjct: 1   MRFTKMQGCGNDYIYVDCFSERVERPEELAREISDRHFGVGGDGLILIERS--GRADAYM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DGSE   CGNG+RC  ++L                  V  + + G   + +    
Sbjct: 59  HMFNQDGSEGNMCGNGIRCTAKYLYEHG------LIPKERREVLIDTKSGIRKLSLLLED 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYH 177
              K + +     ++  +      V+ L L +   + +GNPHA++F+ED+          
Sbjct: 113 GKVKEVTVDMGEARLTSELPERITVSGLPL-SFIGIDVGNPHAVYFLEDNPALKERGFSA 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            DL+  G    +H  F E VN     V S   L+ R +ERG G T ACG+ A A+V A  
Sbjct: 172 LDLSRLGEAFERHERFPERVNSEFIEVLSPSELNFRVYERGSGETFACGTGATAAVAAGI 231

Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280
              K +  V + +LGG L I +   + H +MTG A++ + G+  
Sbjct: 232 LSGKLSDEVRLHLLGGDLTIRYERSDGHYYMTGPAEEVFSGEWK 275


>gi|328554918|gb|AEB25410.1| diaminopimelate epimerase [Bacillus amyloliquefaciens TA208]
          Length = 284

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++          +   A+   S       D ++LI   + A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVHTGIGSDGMILICPSEKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F  ET+ G++ A    D      ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVREVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K +P+  + ++   +   +     L   +   VSMGNPH +F V  D+  
Sbjct: 123 VDMGEPRLTKKELPMLGNEEERTINETFVFGETEL---SGTAVSMGNPHIVFPV-ADISQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EG+N+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +  NR ++V + GG L+I W DN HV MTG A+    G   +
Sbjct: 239 LNGVSERNREITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284


>gi|255038835|ref|YP_003089456.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053]
 gi|254951591|gb|ACT96291.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053]
          Length = 259

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 119/286 (41%), Gaps = 39/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K +G GN  +++D R     ++ + I ++         D ++L+ + +    D  +
Sbjct: 3   IPFYKYQGTGNDFVMVDDRNLQFPVSKELIASICHRRFGVGADGLILLQNAE--GYDFRM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEP 123
              N DG E   CGNG RCVVRF          T F  + G   A               
Sbjct: 61  VYFNADGGEGSMCGNGGRCVVRFANDLGLFDGNTKFIAVDGEHEATVTG----------- 109

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               ++I L  S                        ++ G+PH + +V+ D++  D+ + 
Sbjct: 110 ----EVIRLKMS-----------NVNGVEQYEEYDFMNTGSPHYVTYVD-DIHEADVVNI 153

Query: 184 GNLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           G+ +    ++    G N++   V     L +RT+ERGV   T +CG+   A  +++    
Sbjct: 154 GSEIRYGSVYGPKGGTNVNFVEVIEDNHLSVRTYERGVEDETFSCGTGVTACALSAHLRK 213

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281
                V+V+ +GG L +E+ +        +++ G A + +EG L++
Sbjct: 214 GWPSPVTVETIGGTLAVEYQETGEGQFKDIYLIGPAVRVFEGSLNV 259


>gi|289549057|ref|YP_003474045.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484]
 gi|289182674|gb|ADC89918.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484]
          Length = 278

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 117/289 (40%), Gaps = 32/289 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALSTDDNTHFDQIMLIHDFQ 56
           + F+K+   GN  +V+D R             ++    +   +       D ++LI    
Sbjct: 1   MRFSKLHASGNDFVVLDNRDGKVYSFVNDLRLDMKDFVVKVCAFHTGVGADGLILIESPD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGS 115
           D       +  N DGS  + CGNG RC VRF   R    +   FET+ GI+ A+    G 
Sbjct: 61  DPKNHFKWQFFNSDGSVAEMCGNGSRCAVRFAYERGIAGQEVRFETLAGIIKAEVLEKGR 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
               +     D++ + L     +++                   ++ G PH +  VE ++
Sbjct: 121 RVKVLLTKPKDYRDVTLDVKGTRLE----------------GSFINTGVPHFVVRVE-EI 163

Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233
              D+ S G  +  HP    +G N++  +V     + +RT+ERGV   T ACG+ A A  
Sbjct: 164 DSLDVVSLGRAVRFHPAFEPKGTNVNFLQVVGENKIKVRTYERGVEGETLACGTGATACA 223

Query: 234 VASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
           + S          V V   GG  L I +  +   V++ G     ++G+L
Sbjct: 224 IVSYLKGWVKGSPVDVFTKGGDLLRIHFLPDLQEVYLEGPVVWVFDGEL 272


>gi|126663407|ref|ZP_01734405.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38]
 gi|126625065|gb|EAZ95755.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38]
          Length = 262

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 36/286 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R        T+              D ++L+ +      D  
Sbjct: 3   ISFYKYQGTGNDFVMIDNRSEFFPKKDTNLIKQLCDRRFGIGGDGLILLENH--PQYDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F     +      FE + G   A  +  G +++ M  
Sbjct: 61  MVYYNSDGNESSMCGNGGRCLVAFAKQMGVVENKAEFEAVDGYHYATLDAKGIVALQM-- 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                      +  D +++              N   ++ G+PH +  V++ +       
Sbjct: 119 -----------KDVDTVNQQE------------NYTFLNTGSPHHVQLVDNLVELDIKTE 155

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +         G N++       +   +RT+ERGV   T +CG+   A  +A     K
Sbjct: 156 GAKIRYSDLYGDAGSNVNFVSQLENDIFAVRTYERGVEDETLSCGTGVTAVAIAMHQTGK 215

Query: 242 TNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
           T+   + + + GG L +++  +     +VF+ G A   +EGK+D+ 
Sbjct: 216 TSNNIIDLNVEGGKLKVQFDVDKGNYTNVFLIGPATFVFEGKIDLD 261


>gi|296449978|ref|ZP_06891742.1| diaminopimelate epimerase [Clostridium difficile NAP08]
 gi|296878359|ref|ZP_06902367.1| diaminopimelate epimerase [Clostridium difficile NAP07]
 gi|296261248|gb|EFH08079.1| diaminopimelate epimerase [Clostridium difficile NAP08]
 gi|296430657|gb|EFH16496.1| diaminopimelate epimerase [Clostridium difficile NAP07]
          Length = 285

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 18/286 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++ F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D
Sbjct: 9   LMKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--D 66

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115
             +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N        
Sbjct: 67  VEMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINS 126

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V+MG+     K +P+  + ++  ++   +             V       +   E D+
Sbjct: 127 IRVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSMLMGV---PHTVVIVDELDV 183

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS + 
Sbjct: 184 ED--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIV 241

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 242 CNLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 285


>gi|16080270|ref|NP_391097.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221311159|ref|ZP_03593006.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315486|ref|ZP_03597291.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320401|ref|ZP_03601695.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324685|ref|ZP_03605979.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321312761|ref|YP_004205048.1| diaminopimelate epimerase [Bacillus subtilis BSn5]
 gi|6014913|sp|O32114|DAPF_BACSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2635714|emb|CAB15207.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|291485681|dbj|BAI86756.1| diaminopimelate epimerase [Bacillus subtilis subsp. natto BEST195]
 gi|320019035|gb|ADV94021.1| diaminopimelate epimerase [Bacillus subtilis BSn5]
          Length = 284

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  AI   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPSDQAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F        ++  +  +  +   ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L    +P+    D  +    +              VSMGNPH +F +  D+  
Sbjct: 123 VDMGEPRLTKSELPM---LDGGEEHTINETMAFGEVELTGTAVSMGNPHIVFPI-ADIEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EG+N+      + + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                K N+ ++V + GG L+I W DN HV MTG A+   EG   +
Sbjct: 239 LNGVSKRNQDITVHLAGGDLVINWKDNGHVMMTGPAETVCEGVYFL 284


>gi|307329240|ref|ZP_07608405.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113]
 gi|306885139|gb|EFN16160.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113]
          Length = 310

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 26/314 (8%)

Query: 1   MQSS-MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD- 57
           M ++  + F K  G  N  +++        +++ A+  +         D ++ +      
Sbjct: 1   MSTAPRLSFLKGHGTENDFVIVPDLDGSLELSAAAVARICDRRAGIGGDGLIRVVRSSAH 60

Query: 58  -------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGI 105
                     + F+   N DGS  + CGNG+R   R+L      ++          +R +
Sbjct: 61  PEARAMADQAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEAGDLAVATRAGVRRV 120

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
            +AK+  D +   +          + +  +          +             V+MGNP
Sbjct: 121 HIAKDVGDAAQPGEATAGPDGPITVVMGEATLPGPGPEAEMTVTVGEQSWPARNVNMGNP 180

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           HA+ FV+ DL           +     +  G N+          + +R  ERG G T +C
Sbjct: 181 HAVAFVD-DLAQAGDLLAAPAVRPASAYPHGTNVEFVVDRGPRHVAMRVHERGSGETRSC 239

Query: 226 GSAACASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           G+ ACA +VA+      + AV+       V + GG L+I    +  V MTG A    EG+
Sbjct: 240 GTGACAVMVAAARRDGADPAVTGHPVTYTVDVPGGRLVISERPDGTVEMTGPAVIVAEGE 299

Query: 279 LDIKTGKWIKKNED 292
           LD     W++ +  
Sbjct: 300 LDP---AWLRTDLG 310


>gi|224026132|ref|ZP_03644498.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM
           18228]
 gi|224019368|gb|EEF77366.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM
           18228]
          Length = 271

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 124/279 (44%), Gaps = 19/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           V F KM+G GN  + ++                S        D ++LI   ++   D  +
Sbjct: 3   VKFTKMQGAGNDYIYVNTFLYPLEEPERLSQEWSRPHTGIGSDGLVLIGPSEEG--DFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE   CGN  RC+ +++      +      ET  GI +     +    V+   
Sbjct: 61  RIFNADGSEAMMCGNASRCIGKYVYENGLTQKTRVALETRSGIKILNLRVNDERVVESVT 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +    IP              +             VSMGNPH + FV+  +    L+ 
Sbjct: 121 VDMG---IPTGI---------TPVDLGEGYGYSQGIAVSMGNPHLVIFVDQ-VSDVRLSE 167

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  HP+F + VN+  A+V     + +R WERG G+T ACG+ ACA+ VA+    + 
Sbjct: 168 VGPLLEHHPLFPDRVNVEFAQVIDGSHIRMRVWERGSGITLACGTGACATAVAAAFTGRC 227

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            R   V M GG L ++W++ + H+ M G A K ++G+++
Sbjct: 228 GRESDVTMDGGTLHLQWNEADGHLLMGGPAGKVFDGEIE 266


>gi|239928535|ref|ZP_04685488.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
 gi|291436861|ref|ZP_06576251.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
 gi|291339756|gb|EFE66712.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 39/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       +++  A+ AL         D ++ +   +   
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPENALDLSPAAVAALCDRRAGIGADGLLHVVRSEAHP 59

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L     +        T  G+    
Sbjct: 60  EGRAMADEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             +DG ++V MG+ +L    + ++                          V+MGNPHA+ 
Sbjct: 120 IAKDGDVTVGMGKALLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H         ++    + +GVN+          + LR  ERG G T +CG+ A
Sbjct: 164 FVD-DLAHAGDLLAPPPVSPASAYPDGVNVEFVVDRGPRHVALRVHERGAGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + +V+       V + GG L+I    +  + MTG A    EG+++  
Sbjct: 223 CAVAVATARRDGVDPSVTGTPATYTVDVPGGTLVITERPDGGIEMTGPAVIVAEGEIE-- 280

Query: 283 TGKWIKKN 290
             +W++  
Sbjct: 281 -AEWLENA 287


>gi|126700210|ref|YP_001089107.1| diaminopimelate epimerase [Clostridium difficile 630]
 gi|255101755|ref|ZP_05330732.1| diaminopimelate epimerase [Clostridium difficile QCD-63q42]
 gi|255307623|ref|ZP_05351794.1| diaminopimelate epimerase [Clostridium difficile ATCC 43255]
 gi|115251647|emb|CAJ69480.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium difficile]
          Length = 276

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N        I
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P+  + ++  ++   +             V       +   E D+ 
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSMLMGV---PHTVVIVDELDVD 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +  
Sbjct: 176 D--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276


>gi|311069711|ref|YP_003974634.1| diaminopimelate epimerase [Bacillus atrophaeus 1942]
 gi|310870228|gb|ADP33703.1| diaminopimelate epimerase [Bacillus atrophaeus 1942]
          Length = 284

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++          +   A+   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEEQLADIAVKVSSVYTGIGSDGMILICPSDKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKEN----RDGSIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F  ET+ G++ A+      +   ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFLIETLSGLVKAEVQTADGKVNVVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L    +P+    +       +              VSMGNPH +F +E D+  
Sbjct: 123 VDMGEPRLTKAELPMLGGGE---EQTINETMTFGEAELKGTAVSMGNPHIVFPIE-DIEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EG+N+      + + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEKELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                K +  ++V + GG L+I W +N HV MTG A+   EG   +
Sbjct: 239 LNGVSKRDDNITVHLAGGDLVINWKENGHVMMTGPAETVCEGVYFL 284


>gi|255656570|ref|ZP_05401979.1| diaminopimelate epimerase [Clostridium difficile QCD-23m63]
          Length = 276

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 18/285 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R    N    T+ A        +   D ++++ D + A  D 
Sbjct: 1   MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116
            +   N DGS    CGNG+RC  +F+     +K++SFT +T+ GI   K N        I
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P+  + ++  ++   +             V       +   E D+ 
Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSMLMGV---PHTVVIVDELDVE 175

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              +  +G  +  + +F E  N++  +V    ++ + TWERG G T  CG+   AS +  
Sbjct: 176 D--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L+    +V+V   GG + I+    +  +MTG A K  EG L++
Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276


>gi|261403045|ref|YP_003247269.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7]
 gi|261370038|gb|ACX72787.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7]
          Length = 295

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI   D     +N   +    +     +   D ++ I      + D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKIKENEKKNFSKKICRRGFSVGADGVIFIQKPTSDNFD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRG----ILVAKENRDGSI 116
              RI N DGSE + CGNG+RC  +++  R+ +K+    ET  G     +  +      I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERVMKKNPLRVETKGGLRISEMEVENGEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFF-VE 172
            V MG P    K IP+       + +  +     +  +       VV++GNPHA+ F  +
Sbjct: 121 KVYMGVPKFKLKDIPMILEGKDNEEEFLNGELNLNNPILPKVRLSVVNVGNPHAVIFVED 180

Query: 173 DDLYHYDLAS----FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
           +++    +       G  +  H  F E +N+   +V +   + + TWERG G T ACG+ 
Sbjct: 181 NNIDLDFVRKNLDIIGRDIENHKAFPERINVHFVKVLNPNEIKIITWERGAGYTTACGTG 240

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ASVV +  L KT+  V   + GG L IE  D+  V+M G+A   ++GKL
Sbjct: 241 TTASVVVAHKLGKTSNKVLAHLDGGLLEIEVKDDG-VYMIGDAVAVYDGKL 290


>gi|196019649|ref|XP_002119015.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens]
 gi|190577310|gb|EDV18499.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens]
          Length = 285

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 18/292 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           MVDF K  G+GN  +VID    + ++    + I  +         D I+     +D  + 
Sbjct: 1   MVDFYKYHGLGNDYIVIDPAKLNFDLVLNEENIKLICHRNFGIGSDGILFGPIIKDNKIS 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----RDGSIS 117
             I  +N DGSE +  GNG+R    ++       S  F+        K          I 
Sbjct: 61  FKI--LNPDGSEAEKSGNGIRIFALYVIDEGYVTSDKFDLYTKAGKVKIEVIDKNTNLIK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V +G+       IP+     ++      +     +       V++GNPH I   +  +  
Sbjct: 119 VSIGQYSFINHKIPVKLDCTEVLNQEIELLGKKEIIN----CVNIGNPHCILIKDK-ISK 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G +L  HP+F    N+   ++    ++ +  WERG G T A G+++CA+   + 
Sbjct: 174 DLALKLGPILENHPIFPNKTNVQFVKILDRSNIKIEIWERGAGYTLASGTSSCAASCTAY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            L   +  V+V+M GG + +E  +   VF+TGE  +  +G       ++IKK
Sbjct: 234 ILDFIDNNVTVEMRGGKVFVEIIE-QEVFLTGEVSRISKGVF---ASEFIKK 281


>gi|146297784|ref|YP_001192375.1| diaminopimelate epimerase [Flavobacterium johnsoniae UW101]
 gi|146152202|gb|ABQ03056.1| Diaminopimelate epimerase [Flavobacterium johnsoniae UW101]
          Length = 260

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 38/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V+F K +G GN  ++ID R                        D ++L+ +  D+  D  
Sbjct: 3   VEFYKYQGTGNDFVMIDNRSNFFPKEDVKLIERLCDRRFGIGADGLILLEN--DSETDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG++   CGNG RC+V F     +     TF    G+  A    D  +S+ M +
Sbjct: 61  MVYYNSDGNQSSMCGNGGRCLVAFANQLGVINDKTTFIATDGLHHASVGDDSIVSLQMID 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                            +   ++ G+PH +  V+ DL HY++  
Sbjct: 121 VD-------------------------EVQKNDSYTFLNTGSPHHVQIVD-DLEHYNVKE 154

Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +        +G N++  +     +  LRT+ERGV   T ACG+ A A  +A   + 
Sbjct: 155 NGAAIRYGELYGEKGSNINFVKKVDDGTFSLRTYERGVEDETLACGTGATAVAIAMNAIG 214

Query: 241 KTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           +T++  +++ + GG L++ +        +VF+TG AK  ++G ++I
Sbjct: 215 QTDKTSINLNVEGGKLVVSFDKLGDHFTNVFLTGPAKFVFKGIIEI 260


>gi|288932439|ref|YP_003436499.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642]
 gi|288894687|gb|ADC66224.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642]
          Length = 281

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 122/291 (41%), Gaps = 22/291 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + FAKM G GN  ++ID               + A++        D ++ +   + A  D
Sbjct: 3   IKFAKMHGNGNDFVIIDEFREEVVKEEEKPKFVRAIAHRNFGIGADGVIFVQKSEVA--D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRD---GSIS 117
           A  R  N DGSE + CGNG+RC  R++            ET+ GI   +  ++     + 
Sbjct: 61  AKFRYFNSDGSEAEMCGNGIRCFSRYVVEEGYAASPVRVETLAGIYELEVTKNEEGWWVK 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG P      IP           +              + V+ G PHA+ FVED  + 
Sbjct: 121 VDMGTPKFSKDEIPTKEDV-WGKEIKIDNRSFEI------YAVNTGVPHAVIFVED--FD 171

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           +D+   G  +    +F EG N++  +        +RT+ERGV   T +CG+ + A    +
Sbjct: 172 FDVVRTGRAIRMSELFPEGTNVNFVKREG-NKFFVRTYERGVENETLSCGTGSVAVAAVA 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             L   +  V +   GG L +E+ +    ++ G A +  +GK+  +   + 
Sbjct: 231 RKLGFADDKVEILTRGGKLFVEF-EGEKAYLIGGASRVADGKIRAEELNYE 280


>gi|187734560|ref|YP_001876672.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835]
 gi|187424612|gb|ACD03891.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835]
          Length = 274

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 30/290 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           ++ F KM G GN  +++D R    +  +  + I AL         D ++ +   Q     
Sbjct: 2   LLHFYKMTGAGNDFVMVDNRDLSLSSVLDRETIEALCDRRFGIGADGLIAVEPSQGKGGI 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISV 118
             +R  N DG E + CGNG RC   F  + +         FET+ G++ A   +DG+++V
Sbjct: 62  VRMRYYNADGGEAEMCGNGARCFGNFAAALLHHDKTAPLPFETMAGVVTATFEKDGNVTV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           ++  P                   +  +   +     +   ++ G PHA+ F++  L   
Sbjct: 122 NLTNPHSM----------------QLFVLNADPTVGADVHFLNTGVPHAVAFLDK-LEGL 164

Query: 179 DLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D++  G  L  H  F  +G N + AR+ S   + +RT+ERGV   T ACG+   A  +  
Sbjct: 165 DISRLGAYLRYHEAFSPKGTNANFARILSPGHIAIRTYERGVEDETLACGTGMTACALLH 224

Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
             L      + V + GG  L + +         V +TG A   + G + I
Sbjct: 225 AVLTDAPSPIQVDVAGGDTLKVGFQRTGDRFTDVTLTGPADLVFTGDIQI 274


>gi|228993662|ref|ZP_04153569.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442]
 gi|228766091|gb|EEM14738.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442]
          Length = 288

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++  A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  I      
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLA 181
            +   +L              F      +   R  F  VSMGNPHA+ FV+ D+    L 
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYNNHRYAFTAVSMGNPHAVIFVD-DVEEAPLT 182

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+    K
Sbjct: 183 TLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGSGVTQACGTGACAAVVAAVLNEK 242

Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 243 MKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|254518708|ref|ZP_05130764.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA]
 gi|226912457|gb|EEH97658.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA]
          Length = 274

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 134/282 (47%), Gaps = 20/282 (7%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM+G+GN  ++I D         ++    +         D +++I     A  DA 
Sbjct: 1   MNFIKMQGLGNDFIIIIDNENVLIKTETEIAKKICNRRFGIGADGLVIIRKSNIA--DAK 58

Query: 64  IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSI 116
           + IIN DGS    CGN +RC     +    +++   + ET  GI   +      N+  S+
Sbjct: 59  MVIINSDGSRANMCGNAIRCFAKYLYEYGLVEKNIISIETGDGIKCVELYINDKNKVESV 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+   D K IPL  + + +  +   I    +        + MG PH I    +D Y
Sbjct: 119 KVNMGKGSFDGKDIPLN-NKNSLINEVIKIKEKEYKL----TALLMGVPHTILINNNDEY 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                     + K+ +F EG N++  +V  + +++++TWERG G T ACG+  CASVVA 
Sbjct: 174 DVIEGK---DIEKNNLFIEGTNVNFVKVIDINNIEVKTWERGAGATLACGTGCCASVVAL 230

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             L   +  V+V+ LGG L +E   NN V+M G A+   +G 
Sbjct: 231 KKLGLCSNKVNVETLGGSLAVEII-NNDVYMIGSAEFICKGN 271


>gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 262

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 19/262 (7%)

Query: 37  ALSTDDNTHFDQIMLIHDFQDASV--------DAFIRIINCDGSEVQSCGNGMRCVVRFL 88
               +     D +++      A          D  +R+ N DG+E + CGNG+RC+  F+
Sbjct: 1   MCDRNFGIGADGVIVAMPKGSAEYPGRVVEEEDYAMRMFNSDGTEPEMCGNGIRCLANFV 60

Query: 89  --TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
                   +++   T+ G++  +   DG ++VDMG P L    +P   +    D      
Sbjct: 61  AAIDDADPRAYKVGTLAGLIQPECKPDGQVAVDMGVPTLTPADVPTKLAA-TEDGAAVKS 119

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLAKHPMFSEGVNL 199
                        VSMGNPH + F  +        +   DLA+ G     H  F    N 
Sbjct: 120 QMTVDGATWLATAVSMGNPHCVTFGREKGDEKGLAVDDMDLAAIGPSFESHETFPARTNT 179

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259
               V   + + +R WERG G T ACG+ ACA+VVA     +T+R  +V++ GG L IEW
Sbjct: 180 EFVEVVRRDYVKMRVWERGAGATLACGTGACATVVAGVLEGRTDRKCTVELPGGPLEIEW 239

Query: 260 HD-NNHVFMTGEAKKEWEGKLD 280
            + ++ V MTG A+  + G++D
Sbjct: 240 RESDSRVIMTGPAELVFYGEID 261


>gi|254442131|ref|ZP_05055607.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235]
 gi|198256439|gb|EDY80747.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235]
          Length = 270

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 103/284 (36%), Gaps = 24/284 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM G GN  ++I+       ++ + +  L         D ++L++   D    A +
Sbjct: 3   IAFTKMHGAGNDFVMIENLDGKIELSKEQVARLCNRRFGIGADGLILLNPPADEFAQATM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DG  V  CGNG RC   F                     K +           P+
Sbjct: 63  VYYNADGGRVDMCGNGARCFTSFALQNGVGDGTQLTFKTDAGPMKADAQDGEFTIRMTPM 122

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D                R                ++ G  H I F + D+   D+ S G
Sbjct: 123 HDL---------------RLDQTLSTPHGSFEYHFMNTGVEHVIVFRD-DVDQVDIKSEG 166

Query: 185 NLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
           + +  H     +G N + A +     + +RT+ERGV   T ACG+   A  +A+      
Sbjct: 167 SSIRYHTEFEPKGTNANFAEIQKDGVIKVRTYERGVEDETLACGTGVTAVAIAAALKGMA 226

Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
              VS+ + GG  L I +  +     ++ +TG AK  + G  ++
Sbjct: 227 KAPVSLLVAGGDTLKIGFDLDGENVSNITLTGPAKNVFTGSAEV 270


>gi|171911773|ref|ZP_02927243.1| diaminopimelate epimerase [Verrucomicrobium spinosum DSM 4136]
          Length = 274

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 30/291 (10%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           ++++ F KM G GN  +++D R     ++ ++I  L         D ++ +    +   D
Sbjct: 2   ANLLSFWKMNGAGNDFVMLDNRDLSLQLSGESIAQLCDRHRGVGADGLLAVEPATEGG-D 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVD 119
             +R  N DG E + CGNG RC  RF+         +  FET  G++ A+      + ++
Sbjct: 61  FRMRYYNADGGEAEMCGNGARCFARFVNKLHDNSLAALKFETQAGMISAEF-FGDQVEIN 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177
           M +P                   + + G V          V+ G PHA+ FV+  + L  
Sbjct: 120 MSQPHSL----------------KLNQGLVVDGTPLEVHSVNTGVPHAVVFVDDVNALST 163

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            ++   G  L  H  F  +G N + A V S  S+ +RT+ERGV   T ACG+   A  + 
Sbjct: 164 AEIRRLGACLRYHEAFAPKGTNANFATVISPGSIVIRTYERGVEDETLACGTGMVACALI 223

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGKLDI 281
              LH     VSVK+ GG  L + ++    V+    + G A   ++GKL++
Sbjct: 224 HHELHGAAAPVSVKVKGGDTLKVGFNQAGDVYSDVTLHGPADFVFQGKLEV 274


>gi|269121586|ref|YP_003309763.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386]
 gi|268615464|gb|ACZ09832.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386]
          Length = 285

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 21/284 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K  G+GN  ++ D +    N     +  A            D I+++    +    
Sbjct: 4   LKFEKYHGLGNDFVIFDEKELEKNNIKDYSKLAEKVCHRRFGIGGDGILILKYVDEVP-- 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK----ENRDGS 115
            F+   N DGS+   CGNG+RC   +    S +    FT +TI G ++      E     
Sbjct: 62  -FMLYYNSDGSQAPMCGNGIRCFAYYLKNNSYVAEDKFTVKTIPGDMILDTYTDEKGTFF 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V+MG+P+ + K + +    D    ++  I             + MG  H++ F + DL
Sbjct: 121 ARVNMGKPVFNVKEL-INTDKDNFINEKITIDGEEIEI----SFIFMGTDHSMIFSD-DL 174

Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
              D+   G  +     +F + VN +   +    ++ + TWERG GLT ACG+ A AS V
Sbjct: 175 SKTDIEGTGKKIENFTELFPKKVNANFVEIKDRNNIKVTTWERGAGLTLACGTGATASAV 234

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277
            +  L KT+  V+V++ GG L+IE+ ++    FMTG ++K  EG
Sbjct: 235 LTAYLGKTDSKVNVEVPGGILVIEYPEHGKEAFMTGPSEKVAEG 278


>gi|297202835|ref|ZP_06920232.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083]
 gi|297148226|gb|EFH28907.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083]
          Length = 289

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 118/308 (38%), Gaps = 39/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       ++   A+ AL         D ++ +    +  
Sbjct: 1   MSTR-IPFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGIGGDGLLHVVRSAEHP 59

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L              T  G+    
Sbjct: 60  EAAQMAGEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLALATRGGVKTVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             +DG ++V MG+ +L    + ++                          V+MGNPHA+ 
Sbjct: 120 IAKDGDVTVGMGKALLPEGDVTVSVGDR----------------SWPARSVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H          +    +  GVN+          + +R  ERG G T +CG+ A
Sbjct: 164 FVD-DLAHAGNLYSPPPFSPAAAYPSGVNVEFVVDRGPRHVAMRVHERGAGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A +       V + GG L+I    +  + MTG A    EG++D  
Sbjct: 223 CAVAVATARRDGVDPAATGSPATYTVDVPGGTLVITEQADGEIEMTGPAVIVAEGEID-- 280

Query: 283 TGKWIKKN 290
              W++  
Sbjct: 281 -ADWLENA 287


>gi|315223515|ref|ZP_07865371.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287]
 gi|314946550|gb|EFS98542.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287]
          Length = 264

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 113/286 (39%), Gaps = 38/286 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDA 62
           M+ F K +G GN  ++ID R       ++               D ++L+ +  D   D 
Sbjct: 1   MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLEN--DPQYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +   N DG E   CGNG RCVV F       +  T F  I G   A    D  + + M 
Sbjct: 59  RMVYYNSDGRESTMCGNGGRCVVAFAKRLGIIEHETLFIAIDGEHRATIEGDSYVRLQMK 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                                            +    ++ G+PH + +VE ++   D+ 
Sbjct: 119 NVT-------------------------EVEEHKGYVFLNTGSPHHVQWVE-EVDTVDVK 152

Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           S G  +    +++     ++       +   +RT+ERGV   T +CG+   A  +A   +
Sbjct: 153 SEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYHI 212

Query: 240 HKTN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280
            +T+ + +++   GG L + +        +++++G A+  +EG ++
Sbjct: 213 GETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFEGTIE 258


>gi|239944768|ref|ZP_04696705.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
 gi|239991232|ref|ZP_04711896.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 11379]
 gi|291448231|ref|ZP_06587621.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
 gi|291351178|gb|EFE78082.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998]
          Length = 288

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +S + F K  G  N  +++        + +  +  L         D ++ +       
Sbjct: 1   MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAALVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R    +L      +    T  T  G     
Sbjct: 61  EARSMADEAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGTKRVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G I+V MG+ +L    + ++                          V+MGNPHA+ 
Sbjct: 121 LAKNGDITVSMGQALLPGASVTVSVDGR----------------SWPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H              ++ EGVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVD-DLDHAGDLFSAPPFTPEAVYPEGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + AV+       V + GG L+I  H +  V MTG A    EG +D  
Sbjct: 224 CAVAVATARRDGADPAVTGLPVTYRVDLPGGTLVITEHPDGAVEMTGPAVIVAEGVIDP- 282

Query: 283 TGKWIKKN 290
              W++  
Sbjct: 283 --AWLETA 288


>gi|78187819|ref|YP_375862.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273]
 gi|78167721|gb|ABB24819.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273]
          Length = 268

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 31/284 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K+ G GN  +++D R     + + AI AL         D ++LI   + AS    +
Sbjct: 5   IPFSKLSGAGNDFIIMDNRDRSITLEASAIRALCTRRTGIGADGLILIEPSETAS--FSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120
              N DG     CGNG RC V F  S   +      F FE       A  +   ++ + M
Sbjct: 63  LYHNADGLPGTMCGNGGRCAVWFARSIGVQPDAGGCFRFEANGDPYQAWVSGPETVRLRM 122

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            EP      I L   +                       +  G+PHA+   E       +
Sbjct: 123 REPRGIRDEIDLGGQY--------------------CAFIDTGSPHAVIRTEGLDAVDVV 162

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                +  +  +F  G N++   VT+ +S+DLRT+ERGV   T ACG+ A A+ + S  L
Sbjct: 163 GEGRAIRHRTDIFPGGTNVNFIEVTATDSIDLRTFERGVEDETLACGTGAVAAALLSRRL 222

Query: 240 HKTN-RAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280
             T+  ++ V++  G  L + + ++   V++TG A   + G + 
Sbjct: 223 GMTSADSIRVRVKSGDMLNVTFSEDMREVYLTGPAVIVYTGVVK 266


>gi|188575131|ref|YP_001912060.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519583|gb|ACD57528.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 270

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 85/274 (31%), Positives = 117/274 (42%), Gaps = 9/274 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D+R       +     L+        DQI+ I   +     A   I N 
Sbjct: 1   MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGIWNS 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPILDW 127
           DGS  + CGNG RCV  +L      +   F     +     +    G  +V MG P  D 
Sbjct: 61  DGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAVAMGMPQFDP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPLA         R       H        VSMGNPHA+  V   +    +   G LL
Sbjct: 121 PQIPLAG----FAHARDEYALPVHGDTVRFGAVSMGNPHAVVEVGR-VDAAPVERVGTLL 175

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
            ++  F + VN+   +V     + LR +ERGVG T ACGS ACA+ V      +  R V 
Sbjct: 176 QQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQRCRVERDVQ 235

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           V + GG L I W  D+  V M+G A   ++G+ +
Sbjct: 236 VSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWN 269


>gi|308174911|ref|YP_003921616.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7]
 gi|307607775|emb|CBI44146.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7]
 gi|328913229|gb|AEB64825.1| diaminopimelate epimerase [Bacillus amyloliquefaciens LL3]
          Length = 284

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++          +   A+   S       D ++LI   + A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVYTGIGSDGMILICPSEKAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F  ET+ G++ A    D      ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVSEVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L  K +P+  + D+   +   +     L   +   VSMGNPH +F V  D+  
Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTINETFVFGETEL---SGTAVSMGNPHIVFPV-ADISQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EG+N+      S + L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               +  NR ++V + GG L+I W DN HV MTG A+    G   +
Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284


>gi|296331799|ref|ZP_06874266.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675811|ref|YP_003867483.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151124|gb|EFG92006.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414055|gb|ADM39174.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 284

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 133/286 (46%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  A+   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAVQVSSVYTGIGSDGMILICPSDQAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F        ++  +  +  +   ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVA 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L    +P+    +                      VSMGNPH +F +  D+  
Sbjct: 123 VDMGEPRLTKAELPMLGGGE---EYTISETMTFGEAELTGTAVSMGNPHIVFPI-ADIEQ 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ K P F EGVN+      +   L  R WERG G+T ACG+ ACA+ VAS 
Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVNEHELHFRVWERGSGITQACGTGACAAAVASV 238

Query: 238 CLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               + R   ++V + GG L+I W  N HV MTG A+   EG   +
Sbjct: 239 LNGVSERNQDITVHLAGGDLVINWKGNGHVMMTGPAEIVCEGVYFL 284


>gi|256820441|ref|YP_003141720.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271]
 gi|256582024|gb|ACU93159.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271]
          Length = 264

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 112/286 (39%), Gaps = 38/286 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDA 62
           M+ F K +G GN  ++ID R       ++               D ++L+    D   D 
Sbjct: 1   MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLE--DDPQYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +   N DG E   CGNG RCVV F       +  T F  + G   A    D  + + M 
Sbjct: 59  RMVYYNSDGRESTMCGNGGRCVVAFAKQLGIIEHETLFIAVDGEHRATIEGDSYVRLQMK 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                                            +    ++ G+PH + +VE ++   D+ 
Sbjct: 119 NVT-------------------------EVEEHKGYVFLNTGSPHHVQWVE-EVDAVDVK 152

Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           S G  +    +++     ++       +   +RT+ERGV   T +CG+   A  +A   +
Sbjct: 153 SEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYHI 212

Query: 240 HKTN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280
            +T+ + +++   GG L + +        +++++G A+  ++G ++
Sbjct: 213 GETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFDGTIE 258


>gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
 gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
          Length = 326

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/320 (28%), Positives = 138/320 (43%), Gaps = 50/320 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALS-TDDNTHFDQIMLIHDF 55
           + F K  G+GN  LV+D+R            +  +   + AL         D IM +   
Sbjct: 1   MRFGKYHGLGNDFLVVDLRDPEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAVLPA 60

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKEN 111
                DA +R++N DGSE + CGNG+RCVV++L  R      R++   ET  G+L  + +
Sbjct: 61  -LGDGDARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCRAH 119

Query: 112 RDG------------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
           R               ++VDMG P L+   IP+    ++                 +   
Sbjct: 120 RSDTALGDGGIAAIEQVTVDMGRPRLERAQIPMHGPAEERCISEPLAIA---GRPLDITA 176

Query: 160 VSMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS----------- 206
           VSMGNPHAI FV+             G  L +HP F    N+ +A +             
Sbjct: 177 VSMGNPHAIAFVDVHGAEQRALAELIGPSLERHPWFPRHTNVELAHLRRAPQSAADDDGD 236

Query: 207 ----LESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEW- 259
                  ++L  WERG G+T ACG+ ACA+ VA+    +     A++V +LGG L I   
Sbjct: 237 SADSPTVIELVVWERGCGITLACGTGACATAVAACLTGRARPGEAITVHLLGGPLAITVG 296

Query: 260 HDNNHVFMTGEAKKEWEGKL 279
            + + V M G A   ++G +
Sbjct: 297 AELDSVRMRGPATHVFDGVV 316


>gi|312132071|ref|YP_003999411.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132]
 gi|311908617|gb|ADQ19058.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132]
          Length = 250

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 122/281 (43%), Gaps = 38/281 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K +G GN  ++ID R        D             D ++LI   ++   D  +R
Sbjct: 1   MKFYKYQGTGNDFVMIDNRSNTFQ--GDVAALCHRRFGIGADGLILIE--KEEGYDFRMR 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124
             N DG+E   CGNG RC V+F +     +  T F  + G   A+          +   +
Sbjct: 57  YFNADGAEGSMCGNGGRCAVQFASDLGIFEGKTSFIAVDGPHEAEITDKKVSLKMID--V 114

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              + +P                          + ++ G+PH I F E ++   D+++ G
Sbjct: 115 HPLEEVP------------------------EGYFLNTGSPHLIIFTE-NVDAIDVSTEG 149

Query: 185 NLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             +  +  +    GVN++  +V S  S+ +RT+ERGV   T +CG+   A+ + S  +  
Sbjct: 150 AKIRYNEYWMAKGGVNVNYVQVLSPSSIKVRTYERGVEDETYSCGTGVTAASIISHFIKG 209

Query: 242 TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKL 279
            +  V V+ LGG L +++   +    V +TG A+K +EG+L
Sbjct: 210 VSTRVEVETLGGNLEVQFDPGSLITKVLLTGPAQKVFEGEL 250


>gi|153810058|ref|ZP_01962726.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174]
 gi|149834236|gb|EDM89316.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174]
          Length = 284

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 111/278 (39%), Gaps = 15/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           +M+   K +G+GN  LV+D       +    I  L         D I+      +     
Sbjct: 8   TMI---KYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGILY--GPIEIDGKM 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118
            +RI N DGSE    GNG+R   ++L      K   F         +     +      V
Sbjct: 63  GVRIFNSDGSEAAISGNGVRIFAKYLMDHEYVKEQKFSIQTLSGPIEVECLNNRATEFRV 122

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG+     + IP+     ++  + F      +        +++GNPH I F+   +   
Sbjct: 123 KMGKASFISREIPVTGEVREVINESFTFHNKEYK----ATCLTVGNPHCIIFMNQ-VTPE 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G  +     F E +NL I R     +LD+  WERG G T A G+ +CA+ VA+  
Sbjct: 178 LAKELGPYVENADEFPEKMNLQICRKIDTGNLDIEIWERGSGYTKASGTGSCAAAVAAYR 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           L      V+V   GG + I+  D++ ++MTG      +
Sbjct: 238 LGLVENRVNVNQPGGMIQIDIKDDDTIYMTGTVGYVAD 275


>gi|219850934|ref|YP_002465366.1| diaminopimelate epimerase [Methanosphaerula palustris E1-9c]
 gi|219545193|gb|ACL15643.1| Diaminopimelate epimerase [Methanosphaerula palustris E1-9c]
          Length = 277

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 111/287 (38%), Gaps = 28/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN------ALSTDDNTHFDQIMLIHDFQDAS 59
           + F K+ G GN  L+ID          D +                 D ++ +       
Sbjct: 8   IPFCKLHGNGNDFLLIDELEGTR--IPDQMKGEFAELYCDRRFGVGADGVLFL--SAGTE 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGS--- 115
            D  +RI   D SE + CGNG+RC  R+        ++   ET  G+L    +   S   
Sbjct: 64  GDLRMRIFQPDRSEAEMCGNGIRCFARYAFDQGYFTETCNVETPAGVLPVHVSIGDSTFL 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             + M +P  D   IP                    +        + G PHA+  V+ DL
Sbjct: 124 AQIHMPDPAFDCPGIPATGEGVY----------QQTIAGLTVHATNTGVPHAVVIVD-DL 172

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
              D+      +  HP F +G N++  +VT  +++ +RT+ERGV   T  CG+ A AS  
Sbjct: 173 AAVDVPGLAPQIRHHPSFLKGANVNFVQVTGPDAISVRTFERGVEDETLCCGTGATASAA 232

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +  L      V+V+  GG L I         M G A   + G++ +
Sbjct: 233 VAHRLGLVGDHVAVETAGGPLWITL--GKETLMEGPAVTVFVGEIPL 277


>gi|302542063|ref|ZP_07294405.1| diaminopimelate epimerase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459681|gb|EFL22774.1| diaminopimelate epimerase [Streptomyces himastatinicus ATCC 53653]
          Length = 303

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + F K  G  N  +++        +++ A+  +         D ++ +            
Sbjct: 7   LRFLKGHGTENDFVIVPDLDGRLELSAAAVARICDRRAGVGGDGLIRVVRSSAHPEARGM 66

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            A  + F+   N DGS  + CGNG+R   R+L                + +A       I
Sbjct: 67  AAEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAG------LAEEGDLTIATRAGLRHI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVE 172
            +    P        +     K             + + +       ++MGNPHA+ FV+
Sbjct: 121 HIAKAAPEGAPDSGAVTVGMGKAVLPEPGPDGDVTVEVGDRTWSARNINMGNPHAVAFVD 180

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            DL           +     + +G N+        + + +R  ERG G T +CG+ ACA 
Sbjct: 181 -DLDQAGNLFTAPAVHPASAYPDGTNVEFVVDRGPQHVAMRVHERGSGETRSCGTGACAV 239

Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           +VA+      + AV       +V + GG L+I    +  V MTG A    EG+LD     
Sbjct: 240 MVAAARRDGADPAVTGRPVTYTVDVPGGRLVISEQPDGTVEMTGPAVIVAEGELDP---V 296

Query: 286 WIKK 289
           W+  
Sbjct: 297 WLDA 300


>gi|256810266|ref|YP_003127635.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86]
 gi|256793466|gb|ACV24135.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86]
          Length = 297

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/291 (28%), Positives = 129/291 (44%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI+          +       +     +   D ++ +        D
Sbjct: 3   MEFTKMHALGNDYIVINEFDGEKVKEEEKSYFAKKICRRGFSVGADGVIFVQKPTSDEYD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSI 116
              RI N DGSE + CGNG+RC  +++  R+ +K+      +G      +  + +    I
Sbjct: 63  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLNVETKGGLRVSEMEIEGDEVKKI 122

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173
            V MG P    K IP+       D +  +        +L      VV++GNPHA+ FVED
Sbjct: 123 KVYMGVPKFKLKDIPMVVDGYSEDDEFLNGELELKNPYLPKVKLSVVNVGNPHAVIFVED 182

Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D     L   G  +  H  F E +N+   +V +   + + TWERG G T ACG+ 
Sbjct: 183 NGIDLDFVRKHLDVIGKEIEHHKAFPERINVHFVKVLNPNEIRIITWERGAGYTTACGTG 242

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ASV+ +  L KT   V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 243 TTASVIIAHKLGKTGNKVLAHLDGGDLEIEIKDDG-VYMIGDAVIVYDAKL 292


>gi|301168259|emb|CBW27849.1| putative diaminopimelate epimerase [Bacteriovorax marinus SJ]
          Length = 265

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 25/283 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASV 60
           S+ + F K  G GN  +V+D R    +    A+             D ++  ++      
Sbjct: 4   SAKISFDKYCGTGNDFIVLDNRTGSFDQQDQALWQRICDRRFGVGADGVLFFNNSD--EY 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +  +N DG EV  CGNG R +  F    +  +  F F+T  G+  +   + G I ++
Sbjct: 62  DFEMAYLNADGGEVGMCGNGARVLTSFAKKIQFDKTDFKFKTRDGVYSSSVLKSGLIKLE 121

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           M +                   +   I   + +  ++ F +  G PH ++F++  L +  
Sbjct: 122 MTQ-----------------LSEINTIDVSDLITSKDSFFMDTGVPHCVYFLD-SLDNIP 163

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGC 238
           L  +G  +     FSEG N +   +     L +RT+ERGV   T ACG+ A A   A   
Sbjct: 164 LMEWGAKVRYDKRFSEGANANFVEIIDEGHLKVRTYERGVEGETLACGTGATACAWAYRE 223

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           L+K    + + + GG L + + ++  V+++G+ +K + G  ++
Sbjct: 224 LYKQIDHIKIDVPGGELEVLF-EDGKVYLSGKVEKIFSGVFEV 265


>gi|229007257|ref|ZP_04164858.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4]
 gi|228754011|gb|EEM03448.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4]
          Length = 288

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++  A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  I      
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDLA 181
            +   +L              F      +   R  F  VSMGNPHA+ FV+ D+    L 
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTGVSMGNPHAVIFVD-DVEEAPLT 182

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+    K
Sbjct: 183 TLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAVLNEK 242

Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 243 MKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|17232333|ref|NP_488881.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
 gi|20141402|sp|P54897|DAPF1_ANASP RecName: Full=Diaminopimelate epimerase 1; Short=DAP epimerase 1
 gi|17133978|dbj|BAB76540.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 285

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K   +GN  LVI+ +     +T + I  +         D  +L+           +
Sbjct: 1   MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDG-ILLGPLASTKAQFAL 59

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI N DGSE +  GNG+R      +    +  K F+ ET  GI+ +     G  + V+MG
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++ +++  +       +      ++GNPH +  ++ D+      
Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLD----EGIFTFCAATIGNPHCVILLD-DINSEVAR 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +FG +   +P+F    N+   +V    ++ +  WERG G T A GS++ A+   +  L  
Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +  + VKM GG +LI+  D+ H+ MT    K  +G+L
Sbjct: 235 CDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 272


>gi|313675859|ref|YP_004053855.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126]
 gi|312942557|gb|ADR21747.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126]
          Length = 259

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 36/283 (12%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +F K +G GN  +V+D R    + T   I     +       D ++LI +      D  +
Sbjct: 5   EFYKYQGTGNDFVVVDNRSLKLDKTDKTIAQKLCNRKFGVGSDGLILIENHD--EYDFEM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS+   CGNG RC V+F       K   TF +  G+  A               
Sbjct: 63  IFFNPDGSQS-MCGNGSRCAVKFAQFLGIIKGETTFLSTDGVHEATI------------- 108

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                        D +      +           F ++ G+PH + F  +          
Sbjct: 109 -----------EGDIVRLSMHDVAQSEINTFPEHFTINTGSPHYVIFASNIKNKDVKEEG 157

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
            ++       +EG+N++     S   + +RT+ERGV   T +CG+   A  +A+      
Sbjct: 158 ASIRYNEEFAAEGINVNFVEKLSENKISVRTYERGVEDETLSCGTGVTACAIANVLHGGV 217

Query: 243 NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
              V ++ LGG L++E+  +     +V++TG AK  ++G++++
Sbjct: 218 -SPVQIETLGGQLVVEFELDEGSARNVWLTGPAKNVFKGEIEL 259


>gi|228999700|ref|ZP_04159276.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17]
 gi|228760062|gb|EEM09032.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17]
          Length = 288

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM G+GN  + ++M         ++  A    + +     D ++LI   + A V   +
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+   +  I      
Sbjct: 64  RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDLA 181
            +   +L              F      +   R  F  VSMGNPHA+ FV+ D+    L 
Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTGVSMGNPHAVIFVD-DVEEAPLT 182

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H MF E VN+    + +   ++ R WERG G+T ACG+ ACA+VVA+    K
Sbjct: 183 TLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAVLNEK 242

Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 243 MKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283


>gi|291278646|ref|YP_003495481.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1]
 gi|290753348|dbj|BAI79725.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1]
          Length = 271

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 24/287 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R       N+        +   +   D ++LI +     VD 
Sbjct: 3   IPFYKMTGSGNDFIIIDNRDGKMNDFNLKDFIPKVCARCVSVGADGLILIENSDK--VDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
             +  N DGS  + CGNG RC  RF        K   FETI GI+ A+     ++ V + 
Sbjct: 61  KWQFFNADGSSAEMCGNGSRCAARFAYLNGIAGKKMKFETIAGIIEAEIMDGFNVKVQLT 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP                  ++                ++ G PH +  V+DD+Y +D+ 
Sbjct: 121 EPF----------------DEKIDYEIEVLGEKLTVSSINTGVPHVVVEVKDDIYSFDVV 164

Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G  +  H      G N++  +      L +RT+ERGV   T ACG+ + A+ + +   
Sbjct: 165 KYGREIRFHDVYKPAGTNVNFFKKIGENKLKVRTYERGVENETMACGTGSVATSIIAVKK 224

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              N  V ++   G +L  + ++  VF+ GEA+  + G L+ +  ++
Sbjct: 225 GIVNSPVEIETSSGLILKVYLEDKKVFLEGEARVVYTGNLNKEALEY 271


>gi|217967168|ref|YP_002352674.1| diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724]
 gi|217336267|gb|ACK42060.1| Diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724]
          Length = 285

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K  G+GN  +V D    +  +T   +  +   +     D I+++      + +  +
Sbjct: 1   MEFIKSHGLGNDYIVFDKEKINFPLTEKNVRLICDRNYGIGSDGILILEKI--NNQEFKV 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117
           RI N DGSE +  GNG+R + +++          F         K         R  SI 
Sbjct: 59  RIFNPDGSEAEKSGNGIRILAKYIYDYRYTTEKEFYIYTLGGKVKVSIVEEQKGRAKSIE 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+       IP+  S  ++  +   I             +S+GNPH +FFV+ ++  
Sbjct: 119 VEMGKITFKSSEIPVLGSEREIIDEELKIND----ETIKVTCLSIGNPHCVFFVD-EINE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             + S G  +  HPMF   +N+ + +V S + +++R WERG G T A GS++CA+  AS 
Sbjct: 174 EKIKSLGPKIENHPMFPNRINVQMVKVLSPDKIEIRIWERGAGYTLASGSSSCAAASASY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                N  V V M GG L ++ + +  V + G A++ ++G+L
Sbjct: 234 KKGLVNNQVEVIMPGGVLHVKINPDWSVNLVGPAEEVFKGEL 275


>gi|145220423|ref|YP_001131132.1| diaminopimelate epimerase [Prosthecochloris vibrioformis DSM 265]
 gi|145206587|gb|ABP37630.1| diaminopimelate epimerase [Chlorobium phaeovibrioides DSM 265]
          Length = 268

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 112/278 (40%), Gaps = 23/278 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F+K+ G GN  +VID R    +++   I  +         D ++LI     AS D  +
Sbjct: 5   IPFSKLSGAGNDFVVIDNRNLTISLSQQEIAGMCRRRTGIGADGLILIEPS--ASADFMM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           +  N DG     CGNG R  V F  S                +  E   G      G P 
Sbjct: 63  KYHNADGHPGSMCGNGGRAAVWFAHSIG--------------IPFEQEGGCRFEAGGNPY 108

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
             W  I  + +      +                 V  G+PHAIF+         +   G
Sbjct: 109 RAW--ITASETVRLQMLEPKGFRDNIKTGGGACHFVDTGSPHAIFYTTGLDGVDVVGRGG 166

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +  +  +F  G N++   VT+ +S+ LRT+ERGV   T ACG+ A AS + S  L  T 
Sbjct: 167 EVRHRTDLFPGGTNVNFIEVTAPDSISLRTFERGVEDETLACGTGAVASALMSHRLGMTP 226

Query: 244 R-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGK 278
              + V++  G  L + +  +   +F+TG A+  + G 
Sbjct: 227 STTIQVRVQSGDTLEVRFSSDMKEIFLTGPARIVYRGT 264


>gi|242281163|ref|YP_002993292.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638]
 gi|242124057|gb|ACS81753.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638]
          Length = 281

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 115/286 (40%), Gaps = 23/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHD-FQDASVD 61
           V F KM+G GN  ++ID R     +      A          + D +  I +  + + +D
Sbjct: 9   VPFYKMQGCGNDFVIIDNRELGIPVEKMSLWAEKLCQRAFGVYADGLFFIENAPEGSGLD 68

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              +  N DGS  + CGN  RC  R      +  +   F +  G +  +           
Sbjct: 69  FVWQFYNSDGSRAEMCGNASRCAGRLAHALEIAGEQHVFGSDAGPIKVQV---------- 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P L+   + L      + +    I    +         + G PH +  V  D+   D+
Sbjct: 119 -FPELEEVKVQLTPPQGLVVKQTLEIDGEEYE----YHFANTGVPHVVVQV-ADVEEVDI 172

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
              G     H  F   G N++  ++   +SL +RT+ERGV   T ACG+   A  V    
Sbjct: 173 KKLGAAFRYHEAFAPAGTNVNFVQIDDNDSLIVRTYERGVEDETYACGTGVSAVQVTLYE 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
              T+ AV V+  GG +L    ++ +VF+ G A+  + G++ +++ 
Sbjct: 233 QGLTDAAVRVRTSGGEILKVIIEDGNVFLQGGAELTFSGEVYLESL 278


>gi|189345730|ref|YP_001942259.1| diaminopimelate epimerase [Chlorobium limicola DSM 245]
 gi|189339877|gb|ACD89280.1| Diaminopimelate epimerase [Chlorobium limicola DSM 245]
          Length = 272

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 33/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +VID R    ++++  I A+         D ++LI   +    D  +
Sbjct: 3   IHFTKLSGAGNDFIVIDNRNHPVHLSTARIKAMCTRRTGIGADGLILIEPSRH--FDFSM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              N DG     CGNG RC V F          +  ++FE       A      ++ + M
Sbjct: 61  NYYNADGLPGSMCGNGGRCAVYFAHATGVPAADQGRYSFEANGNRYEAAVTGKETVRLHM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYD 179
            +P      + +                       N   V+ G+PHA+ ++E   L   D
Sbjct: 121 LDPEDFRNAVAVEG--------------------FNCHYVNTGSPHAVIYIESRKLEALD 160

Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           ++  G  +  +  +F  G N++   +T+ +S+ +RT+ERGV   T ACG+ A A+ + S 
Sbjct: 161 VSGHGKAIRLRSDVFPGGTNVNFLEITAPDSISVRTFERGVEDETLACGTGAVAAALMSF 220

Query: 238 CLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282
            L K  +  V VK+  G  L + + ++   V +TG AK  + G  +++
Sbjct: 221 RLGKVSSSTVKVKVRSGDTLEVAFSEDLKSVTLTGPAKIIYRGIAEVQ 268


>gi|302537339|ref|ZP_07289681.1| diaminopimelate epimerase [Streptomyces sp. C]
 gi|302446234|gb|EFL18050.1| diaminopimelate epimerase [Streptomyces sp. C]
          Length = 291

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 117/308 (37%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M  + + F K  G  N  +++       ++   A+ AL         D ++ +       
Sbjct: 1   MTHTTLSFLKGHGTENDFVIVPDPDNSVDLPPTAVAALCDRRAGIGADGVLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L      +       T  G+    
Sbjct: 61  EAAHMADEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQHAGHVEPGDLAIATRGGVKQVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++ G ++V MG  +L    + ++                          V+MGNPHA+ 
Sbjct: 121 LDKTGDVTVSMGRALLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVE  L H          +    +  GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVE-SLDHAGNLYSPPPFSPASAYPTGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+         +T R V  +V + GG L+I  H +  V MTG A     G+ +  
Sbjct: 224 CAVAVAAIRRDGADPAETGRPVSYTVDLPGGTLVITEHPDGRVDMTGPAVIVASGEFE-- 281

Query: 283 TGKWIKKN 290
              W+ + 
Sbjct: 282 -AAWLTET 288


>gi|319951600|ref|YP_004162867.1| diaminopimelate epimerase [Cellulophaga algicola DSM 14237]
 gi|319420260|gb|ADV47369.1| Diaminopimelate epimerase [Cellulophaga algicola DSM 14237]
          Length = 258

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 119/285 (41%), Gaps = 38/285 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    +   T               D ++L+ +  +  +D  
Sbjct: 3   LTFYKFQGTGNDFVMVDNRQNLFDKKDTKLIAFLCDRRFGVGADGLILLEN--EDGLDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F     +   S +F  I G+  A   ++G +S+ M  
Sbjct: 61  MVYFNSDGNESTMCGNGGRCLVSFANYLGIIENSASFNAIDGLHKASI-KEGLVSLQMKN 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                            N   +  G+PH +  V  +L  +++  
Sbjct: 120 VS-------------------------EIKEKPNAVFLDTGSPHHVQLV-ANLKDFNVKK 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  L       +G N++        +  +RT+ERGV   T +CG+   A+ +A     K
Sbjct: 154 EGARLRYGVYGEKGSNINFVEQIDAVNFSVRTYERGVEDETLSCGTGVTAAAIAMHKTAK 213

Query: 242 T-NRAVSVKMLGGGLLIEWH-DNN---HVFMTGEAKKEWEGKLDI 281
           T    + +K LGG L I +  ++    +VF+TG AK  ++G++D+
Sbjct: 214 TAGNEIYIKALGGDLTIRFDVEDGVYSNVFLTGPAKFVFKGEIDV 258


>gi|164687809|ref|ZP_02211837.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM
           16795]
 gi|164603084|gb|EDQ96549.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM
           16795]
          Length = 277

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F K+ GIGN  + ID R  + +       A  A     +   D ++++ +   A  D 
Sbjct: 1   MKFWKLHGIGNDFVAIDGRYDNIDNNDYGEYAKRACHRKFSVGADGLLVVKNSDVA--DV 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDG----SI 116
            +   N DGS    CGNG+RC V+F+       +  F   T+ GI   K N       SI
Sbjct: 59  EMVYYNSDGSRAAMCGNGLRCFVKFVYDNNIVEKDEFNVYTLDGIKKVKINLKDGKIESI 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+     K +P++   +K    +  +    +        + MG PH + FV+ +L 
Sbjct: 119 KVNMGKGSFLAKDVPVSAQIEKFVEQKITVLDREY----TVTSILMGVPHTVIFVD-ELS 173

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             ++  +G  + KH +F +  N++  ++   +++ ++T+ERG G T  CG+   A V+ S
Sbjct: 174 MEEVCKYGAAIEKHYIFPKKTNVNFVKIIDDKNILVKTFERGCGYTFGCGTGMTACVMVS 233

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L K  ++V+V   GG + I+  +N   +MTG A K  EG L++
Sbjct: 234 NYLGKVGKSVNVISEGGSVRIDL-ENGFAYMTGPAVKICEGNLEV 277


>gi|158523170|ref|YP_001531040.1| diaminopimelate epimerase [Desulfococcus oleovorans Hxd3]
 gi|158511996|gb|ABW68963.1| Diaminopimelate epimerase [Desulfococcus oleovorans Hxd3]
          Length = 310

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 13/293 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           V F K  G+GN  +VID     + +++D +  +   +     D I+    F  +  D  +
Sbjct: 26  VQFHKYHGLGNDYIVIDPADAGEVLSADQVRRICHRNYGMGSDGILF-GPFAGSRGDFGL 84

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKEN-RDGSISVDM 120
           RI N DGSE +  GNG+R   R+L           F  +T  G++ A  +  DG I+VDM
Sbjct: 85  RIFNPDGSEAEKSGNGLRIFARYLWDMGLVDADAPFAIDTKGGVVHAMVHGADGLITVDM 144

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G    +   IP+      +  +  +               ++GNPH +   + ++     
Sbjct: 145 GTVSFEAADIPVTG----ITGEVLNQPVCVKGRDLVYCGATIGNPHCVVLCD-EISDQMA 199

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G+ L   P F    N+   +V    ++ +  WERG G T A GS+A AS   +  + 
Sbjct: 200 LELGSSLENDPRFPNRTNVQFMKVIDRNTIAIEIWERGAGYTLASGSSASASAAVARRIG 259

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
             ++++ V M GG L I   D+  + +TG A K   G   + T  W     ++
Sbjct: 260 VCDQSIIVHMPGGTLDITVKDDYSIRLTGPAAKIAMGT--LSTEVWSGTPPEE 310


>gi|166032803|ref|ZP_02235632.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC
           27755]
 gi|166027160|gb|EDR45917.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC
           27755]
          Length = 285

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 12/274 (4%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69
             G+ N  +V D       +T   +  +   +     D ++             +++ N 
Sbjct: 8   YHGLSNDYVVFDPNKNELELTPGNVKMICDRNAGLGADGVL--EGPVIKEDGMHVKVWNP 65

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPIL 125
           DGSE ++ GNG+R   ++L      +   F+       A           + V MG+   
Sbjct: 66  DGSESETSGNGVRIFAKYLKDAGYIQKKNFKLYTRYGEAAVTFLNEDGSRLRVSMGKISF 125

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G+
Sbjct: 126 WSDEIPVTGEKREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISKNIVCKIGD 180

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
                  F   +N  I +V   E++ +  +ERG G T A G+ ACA+   +  L  TN  
Sbjct: 181 YSECAKYFPHRINTQIMKVIDKENIAIEIYERGAGYTLASGTGACAAAAVAHKLGMTNNK 240

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           V V M GG L +E  D+  VFMTG+     +  L
Sbjct: 241 VIVHMPGGDLQVEVEDDGTVFMTGDVFYVAKITL 274


>gi|330976602|gb|EGH76646.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 223

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 105/228 (46%), Gaps = 9/228 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    + IP   +                        VSMGNPHA+  V+ D+ +  + 
Sbjct: 122 PPRFVPEEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             G  +  HP F   VN+    V   +   LR WERG G T ACG+ A
Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGA 223


>gi|108761193|ref|YP_633209.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622]
 gi|108465073|gb|ABF90258.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622]
          Length = 283

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 112/281 (39%), Gaps = 11/281 (3%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67
            K +G+GN  +V+D RG  ++I +     +         D ++ +   +     A + + 
Sbjct: 8   FKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGI--ARMVVH 65

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPILD 126
           N DGS  + CGNG+RC V+FL     +         G  V       G   V   +  + 
Sbjct: 66  NADGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMG 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              +             F    V        + VSMGNPH +     D    D +  G L
Sbjct: 126 PARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVSMGNPHMVL---LDQPLEDASRLGPL 182

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
           L  HP F +  N+   R    + L +  WERG GLT ACG+ ACAS VA+    +     
Sbjct: 183 LEHHPSFPDRTNVEFVR-VDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPADA 241

Query: 247 --SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284
              V + GG L I    + + + + G     +EG +   +G
Sbjct: 242 WLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSG 282


>gi|150025283|ref|YP_001296109.1| diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86]
 gi|229807492|sp|A6GYX5|DAPF_FLAPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|149771824|emb|CAL43298.1| Diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86]
          Length = 256

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 38/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +   K +G GN  ++ID R        T+              D ++L+ +  D S D  
Sbjct: 1   MKLYKYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLILLEN--DQSTDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG++   CGNG RC+V F     + +   TF  I G+  A  N +  IS+ M  
Sbjct: 59  MVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGLHHATINENDIISLQMKN 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                            N   ++ G+PH + F + +L ++D+ +
Sbjct: 119 VE-------------------------EVNIHDNYVFLNTGSPHHVQFAD-NLSNFDVKN 152

Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +         G N++    TS     +RT+ERGV   T +CG+ A A+ +A     
Sbjct: 153 EGAKIRYSDLYGQAGSNINFVHQTSPTQFSIRTYERGVEDETLSCGTGATATAIAMKATG 212

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           KTN   +++ + GG L + ++  N    ++F+ G A+  +E  +
Sbjct: 213 KTNSNNITINVQGGKLEVSFNQENSIFTNIFLKGPAEFVFETTI 256


>gi|295135431|ref|YP_003586107.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87]
 gi|294983446|gb|ADF53911.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87]
          Length = 263

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 35/284 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      N T               D ++L+        D  
Sbjct: 3   LQFFKYQGTGNDFVMIDNRNNVVSKNDTKLINRLCDRKFGIGADGLILLEHPDVEGDDFK 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGE 122
           +   N DG++   CGNG RC+V F       ++   F  I G   A  ++D  +++ M  
Sbjct: 63  MVYFNADGNQSSMCGNGGRCLVAFAKMLGIIETQAKFTAIDGPHKAFIDKDNVVNLQMQN 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                      +     N   +  G+PH I F ED         
Sbjct: 123 VS-------------------------DIYQSGNIAFLDTGSPHHIVFTEDVKNLDVKEE 157

Query: 183 FGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
              +        +G N++    T    +  +RT+ERGV   T ACG+   A  +A+   +
Sbjct: 158 GAAIRYSSDYKEKGTNVNFVEKTDEENTFIVRTYERGVEDETLACGTGVTAVAIAAHHSN 217

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           +T    V +++ GG L + +  +      V++ G A   ++G++
Sbjct: 218 RTKASEVKLQVPGGNLSVSFKSDGDSYSDVWLKGPAVLVFKGEI 261


>gi|289191541|ref|YP_003457482.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22]
 gi|288937991|gb|ADC68746.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22]
          Length = 295

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI+          +       +     +   D ++ I        D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKVKEEEKGNFAKKICRRGFSVGADGVIFIQKPTSDEYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGS----I 116
              RI N DGSE + CGNG+RC  +++  R+ +K+    ET  G+ V++   +G     I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173
            V MG P    K IP+     K D +  +        +L      VV++GNPHA+ FVED
Sbjct: 121 KVYMGIPKFKLKDIPMVVDGYKEDDEFLNGELKLKNPYLPKVKLSVVNVGNPHAVIFVED 180

Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D     L   G  +  H  F E +N+   +V +   + + TWERG G T ACG+ 
Sbjct: 181 NGIDLDFVREHLDVIGKEIECHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTACGTG 240

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ASV+ +  L KT+  V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 241 TTASVIIAHKLGKTSNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290


>gi|78188320|ref|YP_378658.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3]
 gi|78170519|gb|ABB27615.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3]
          Length = 270

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 33/285 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +VID R      +++ I AL         D ++LI     A  D  +
Sbjct: 3   IPFKKLSGAGNDFIVIDNRHNSIEFSTETIKALCTRRTGIGADGLILIEASLSA--DFTM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
           +  N DG     CGNG RC   F  +      K   + FE       A       + + M
Sbjct: 61  KYYNSDGLLGSMCGNGGRCAAYFAYNSGVPTQKSNEYLFEANGNYYHAWIVDKEQVKLQM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P    + + +                         + ++ G+PH + +V+D       
Sbjct: 121 NPPHDFKENLQVEG--------------------LLCYFLNTGSPHVVTYVDDVNIINVY 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                +  +  +F+ G N++  + TS   L +RT+ERGV   T ACG+ A AS + S  L
Sbjct: 161 EKGDAIRHRTDIFNGGTNVNFVQQTSANELIIRTFERGVEDETLACGTGAVASALISHML 220

Query: 240 HKTNR---AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280
            KTN     V+V+  G  L I +     +++++G AK  + G  +
Sbjct: 221 GKTNSTSLNVTVRS-GDTLQISFTSAMENIYLSGPAKIIFSGTFE 264


>gi|291521301|emb|CBK79594.1| diaminopimelate epimerase [Coprococcus catus GD/7]
          Length = 307

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 111/295 (37%), Gaps = 27/295 (9%)

Query: 8   FAKMEGIGNKILVIDMRG----CHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDA 58
           F KM G+GN  + +D             S+    L+            D ++ I   ++A
Sbjct: 11  FTKMHGLGNDYIYMDGFDSRMSKPAAWPSEQKGRLAVMMSRRHTGIGADGLIFIQPSEEA 70

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           +    + + N DGS    CGNG+RC  R+        + +F+      +    R   I  
Sbjct: 71  A--FRMEMYNADGSRGAMCGNGIRCAARYAYDHGISTNQSFQVQTDSGI----RSVYIRK 124

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDD 174
                 +    + +    +  ++                      VS GN H IFFVE +
Sbjct: 125 TDEGEHITSVRVDMGVMANLGEQRVLLKAKEEWTDFTGGSFPVQYVSAGNRHCIFFVE-N 183

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAA 229
           +  + L     L+   P   +GVN+  A V        + + +R  ERG G T ACG+ A
Sbjct: 184 VEAFQLKKAAELIHTLPGNEDGVNVEAAAVEKIAVTGEKYIKMRVIERGSGETMACGTGA 243

Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA   A+        +  V ++  GG L   +  +  + M G A+  +EG  DI 
Sbjct: 244 CAVTAAAVWQGYCRYDENVEIRQPGGILTTAYLADGRMLMEGPAEYVFEGYFDIP 298


>gi|158320453|ref|YP_001512960.1| diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs]
 gi|167012031|sp|A8MH77|DAPF_ALKOO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|158140652|gb|ABW18964.1| Diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs]
          Length = 280

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 15/282 (5%)

Query: 6   VDFAKMEGIGNKILVI--DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V F KM+G GN  +V+  D     + ++  A            D +++++    A  D  
Sbjct: 3   VQFKKMQGTGNDFIVVKYDDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPSSIA--DIR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGSIS 117
           +   N DGS    CGNG+RC  +F+      + K F+ ET+ GI       ++    S+ 
Sbjct: 61  MDYYNSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQFSVETLDGIKEIAIIEEKGTVKSVE 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG+   D + IP+          +  +G  + +       VSMG PH I F E  L  
Sbjct: 121 VNMGQVTYDTEKIPVVSEDGYFINKKITVGGQDFII----TAVSMGVPHVIIFTEK-LDL 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +  FG L+ KH +F +  N++       +++ +RTWERG G T ACG+ + ++V  + 
Sbjct: 176 EQIKFFGPLIEKHAIFPKKTNVNFVHRIDKDNIAVRTWERGAGYTLACGTGSTSAVAVAN 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L   N  V+V++ GG + I+  ++ ++FM G A+    G+ 
Sbjct: 236 KLGLVNNNVNVEVEGGNIKIKIKESGNLFMEGPAENICSGRF 277


>gi|213964302|ref|ZP_03392529.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno]
 gi|213953061|gb|EEB64416.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno]
          Length = 258

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 38/286 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62
           M++F K +G GN  ++ID R       ++ + A           D ++L+ +  D+  D 
Sbjct: 1   MMNFYKYQGTGNDFVMIDNREGTFPKDNEKLIAHLCDRRFGIGADGLILLEN--DSQYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +   N DG +   CGNG RCVV F       +  T F  I G   A    D  + + M 
Sbjct: 59  RMVYYNSDGRQSTMCGNGGRCVVAFAKQLGVIERETLFIAIDGEHRATIEGDNYVHLQMK 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                                       +     +   ++ G+PH + +V+ D+   D+ 
Sbjct: 119 NVT-------------------------SVEEHPDYVFLNTGSPHHVQWVD-DVETVDVK 152

Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G ++    ++++    ++           +RT+ERGV   T +CG+   A  +A    
Sbjct: 153 PEGAVIRYGTLYADKGGSNVNFVSKGENGFKVRTYERGVEDETYSCGTGVTAVAIALYHT 212

Query: 240 HKTN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280
            +T  + +++   GG L + +     +  +++++G A+  +EG + 
Sbjct: 213 KQTKAQTITLHTRGGDLQVSFDRVAEEYKNIYLSGSAQFVFEGVIK 258


>gi|225387894|ref|ZP_03757658.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme
           DSM 15981]
 gi|225046021|gb|EEG56267.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme
           DSM 15981]
          Length = 283

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 17/286 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+GIGN  + ++         +     +S        D ++LI      + D  +
Sbjct: 7   MRFTKMQGIGNDYVYVNCFEETVADPAAVARFVSDRHFGIGSDGLILIGPS--GTADCRM 64

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120
            + N DGS    CGNG+RCV ++          R+S T ET+ G+   +       +V+ 
Sbjct: 65  DMYNMDGSRGVMCGNGVRCVGKYAYDHGLVPGDRRSLTVETLAGVKTIE------FTVEE 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                  +L+ +     ++  +      V+     +   +S+GNPHA++F++  +    L
Sbjct: 119 KNGRFTARLLTVDMGEARLTSELPEPINVDGRD-YSFVGISVGNPHAVYFMD-SIDDLRL 176

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
              G     HP F  + VN    ++     + +R WERG G T ACG+ A AS  A+  +
Sbjct: 177 DRIGPSFEMHPRFQPDRVNTEFIQLVDRNHIRMRVWERGSGETWACGTGATASAAAAILM 236

Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284
             T   V V++ GG L I    ++ H+FMTG A + + G +DI   
Sbjct: 237 GYTEDEVEVELRGGKLRIRLDRESGHLFMTGPAVEVFRGDIDIPEN 282


>gi|258593056|emb|CBE69367.1| Diaminopimelate epimerase (DAP epimerase) [NC10 bacterium 'Dutch
           sediment']
          Length = 274

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 78/282 (27%), Positives = 114/282 (40%), Gaps = 30/282 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F KM G GN  +VID R  H +I     A        +   D ++L+     A  D  +R
Sbjct: 6   FMKMSGSGNDFVVIDNRNGHLDIEPRTLAERICRRRISVGADGLILVEPSSVA--DFRMR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           I+N DGSE + CGNG RCV RF     +      FET+ GI+ A  +             
Sbjct: 64  ILNADGSEAEMCGNGGRCVARFAEMLGIAGPHMAFETLAGIIRAWVDGSK---------- 113

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                  +     +    R H              ++ G PH + F   DL    + + G
Sbjct: 114 -------VKLQISRPQGIRLHQSIEVDGAAHVVHSINTGVPHVVLF-STDLEAVPVRTLG 165

Query: 185 NLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +  HP     G N++ A      +L +RT+ERGV   T ACG+   AS + +  L   
Sbjct: 166 RTIRFHPAFQPAGTNVNFATTVDGRTLAIRTYERGVEDETLACGTGTVASALVAATLGLV 225

Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279
              V V++  G  L +    N      VF  GE +  ++G+L
Sbjct: 226 ASPVRVQVRSGEMLTVSLTGNGPEYEEVFFEGEVRLVYQGEL 267


>gi|304320387|ref|YP_003854030.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503]
 gi|303299289|gb|ADM08888.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503]
          Length = 282

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 101/261 (38%), Positives = 143/261 (54%), Gaps = 7/261 (2%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M+GIGN  +++D+RG    +  DA   L+   +    DQ++ +    +    A + I N 
Sbjct: 17  MDGIGNAFIIVDLRGGG-TLGEDAARGLAEAAEGVRIDQVIGLVAEGEG---AAMTIFNR 72

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGS   +CGN  RC+   L          F T  G + A    D  ++VDMG P L W+ 
Sbjct: 73  DGSVAGACGNAARCIAWRLMEEQGTDEVIFGTPAGSVTATRAGDHRVTVDMGAPRLGWQD 132

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPLA + +        +GP+++  L  P  VSMGNPH +FFVE D+    L  FG L+  
Sbjct: 133 IPLAEACEDTRFLDIKVGPIDNPVLWGPSAVSMGNPHCVFFVE-DVAAQRLDRFGPLIEN 191

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249
           HP+F EG N+S+A V     + LRTWERG GLT ACG+AACA++V++    +T R   V 
Sbjct: 192 HPLFPEGANVSVAEVPDPHHIRLRTWERGAGLTQACGTAACAALVSAVRRRRTGRRADVT 251

Query: 250 MLGGGLLIEWHD-NNHVFMTG 269
           + GG L I W + ++HV MTG
Sbjct: 252 LPGGTLDISWREADDHVLMTG 272


>gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
 gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
          Length = 293

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 120/293 (40%), Gaps = 36/293 (12%)

Query: 21  IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76
           +D R   +      DA+   + +     D ++L+        D  + I N DGS  E   
Sbjct: 1   VDNRESPEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59

Query: 77  CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           CGNG+RC+ RF+           +S+   T  G ++     DG + VDMG PIL+   IP
Sbjct: 60  CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGN 185
                   D                   VSMGNPH + F E       DL    L   G 
Sbjct: 120 TLLPG-HFDGTVIQKPLEVDGKTWLVTCVSMGNPHCVTFGEEHEEHLFDLSTLPLEKIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG------------------LTAACGS 227
           L   H  F +  N     V SL  L +R WERG G                  +T ACG+
Sbjct: 179 LFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLACGT 238

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            ACA+ VA+    +  +   V + GG L +EW  ++ HV+M+G A+  + G L
Sbjct: 239 GACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291


>gi|154503276|ref|ZP_02040336.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149]
 gi|153796270|gb|EDN78690.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149]
          Length = 285

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 12/275 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   +  G+GN  LV D       +  + +  L   +     D I+             +
Sbjct: 3   ITLERYHGLGNDYLVYDPNKNELELNEENVKMLCNRNMGLGADGIL--EGPLMEEKQMAV 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG--SISVDM 120
           RI N +GS  +  GNG+R   ++      +++K +T  T  G +      +    + V M
Sbjct: 61  RIWNPNGSIAEKSGNGVRIFAKYLKDAGYVQKKHYTMLTDGGEVEITYLNEEGSRLKVSM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       IP+     ++  +    G      L     VS+GNPH +  ++ ++    +
Sbjct: 121 GKLSFWSDEIPVIGERRQVINEDMVFG----RTLYPATCVSIGNPHCVIPMQ-EISEPLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G    +   F   +N  +  V  + ++ + T+ERG G T A G+ ACA+   +  L 
Sbjct: 176 CKIGRESERARYFPNHINTELMNVIDMNNIAIETYERGAGYTMANGTGACAAAGVAYKLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
            T+  V V M GG L +E  D+   +MTG+     
Sbjct: 236 LTSNKVIVHMPGGELQVEIGDDWEAYMTGDVFYVA 270


>gi|194015605|ref|ZP_03054221.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061]
 gi|194013009|gb|EDW22575.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061]
          Length = 284

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++          ++  AI   S       D ++LI     A V   
Sbjct: 5   QFTKMHGLGNNYIYVNQMKEQLPEEQLSEIAIRVSSVYTGIGSDGMILICPSDIAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117
           +RI N DGSE ++CGNG+RCV +++         TF+       +   +  ++     ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDGHVHLVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P  + + +P+         +             N   VSMGNPH +F++E D+  
Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINETLDFG---TTTLNGTAVSMGNPHIVFYLE-DIEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ KH MF EGVN+    V S   L  R WERG G+T ACG+ ACA+ V++ 
Sbjct: 179 APLDTIGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTI 238

Query: 238 CLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +  +    +V + GG L+I W DN HV MTG A+   +G   +
Sbjct: 239 VNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284


>gi|157693630|ref|YP_001488092.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032]
 gi|167012032|sp|A8FH15|DAPF_BACP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157682388|gb|ABV63532.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032]
          Length = 284

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 17/286 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++        + ++  AI   S       D ++LI     A V   
Sbjct: 5   QFTKMHGLGNNYIYVNQMKEQLPEEKLSEIAIQVSSIYTGIGSDGMILICPSDVAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117
           +RI N DGSE ++CGNG+RCV +++         TF+       +   +  +++    ++
Sbjct: 63  MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDDHVHLVT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+P  + + +P+         +             N   VSMGNPH +F++E D+  
Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINEPLDFG---TTTLNGTAVSMGNPHIVFYLE-DIEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G ++ KH MF EGVN+    V S   L  R WERG G+T ACG+ ACA+ V++ 
Sbjct: 179 APLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTI 238

Query: 238 CLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +  +    +V + GG L+I W DN HV MTG A+   +G   +
Sbjct: 239 VNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284


>gi|149372337|ref|ZP_01891525.1| diaminopimelate epimerase [unidentified eubacterium SCB49]
 gi|149354727|gb|EDM43290.1| diaminopimelate epimerase [unidentified eubacterium SCB49]
          Length = 257

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 38/283 (13%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +F K +G GN  ++ID R        T               D ++L+ +  DA++D  +
Sbjct: 4   NFYKYQGTGNDFVIIDNRELTFPKKDTKLIALMCDRKFGVGADGLILLEN--DATLDFKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG+E   CGNG RC+V F     +   + TF+ I G   A    DG         
Sbjct: 62  VYYNADGNESSMCGNGGRCIVDFAKQIGVINSATTFQAIDGPHEAVVKADG--------- 112

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                 I   +   L N   ++ G+PH +  VE +L ++++ + 
Sbjct: 113 -----------------VSLKMIDVDDVNVLENYMFLNTGSPHHVQLVE-NLKNFEVFTQ 154

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
           G  +       EG N++     S ++  +RT+ERGV   T +CG+   A  +A    +K 
Sbjct: 155 GKEIRNSIYGDEGANVNFVEQESEDTFKVRTYERGVEDETLSCGTGVTAVAIALHKTNKL 214

Query: 243 -NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
               V++   GG L +++   +    +VF+ G A   ++G  +
Sbjct: 215 KENQVNLMTEGGLLQVKFDFTDGVYSNVFLEGPATLVFKGVWE 257


>gi|313205931|ref|YP_004045108.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868]
 gi|312445247|gb|ADQ81602.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868]
 gi|315022243|gb|EFT35271.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-YM]
 gi|325336628|gb|ADZ12902.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-GD]
          Length = 253

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 36/282 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           M+ F K +G GN  ++++ R  + + + + I  L         D ++L+ +  D   D  
Sbjct: 1   MLTFYKYQGTGNDFIMVNNRQMNFDKSKENIAHLCHRRFGVGADGLILLENCPD--TDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F     +     TF  I G+  A+ N +         
Sbjct: 59  MVYYNADGAESTMCGNGGRCLVAFAHFLGVFENKCTFNAIDGLHEAEVNGN--------- 109

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                  I   N     + FV++ G+PH + FV +         
Sbjct: 110 -----------------VVKLKMIDVSNISRDASDFVLNTGSPHYVRFVSEVEKLDVYKE 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +        EG+N++       E+L +RT+ERGV   T +CG+   AS + S    K
Sbjct: 153 GKQVRYSEKYQQEGINVNFVEKIDDETLFVRTYERGVEDETYSCGTGVTASAL-SFIQDK 211

Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
              +V++K LGG L +     +    +V++ G A + ++G +
Sbjct: 212 DKNSVNIKTLGGNLKVYAEKKDAGFCNVWLEGPAVQVFKGTI 253


>gi|225375607|ref|ZP_03752828.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM
           16841]
 gi|225212586|gb|EEG94940.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM
           16841]
          Length = 279

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 16/288 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           MV   K  G+GN  L+ D     + +    I  L   +     D I+        +    
Sbjct: 1   MVTLKKYHGLGNDYLIYDPNQNRELLQERQIQLLCRRNTGVGADGIL--SGPVLENEKIK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK---ENRDGSISV 118
           +RI N DGSE +  GNG+R   ++      +K K +   T  G +  +   E+       
Sbjct: 59  VRIFNPDGSEAERSGNGIRIFSKYLKDAGYVKEKCYELWTKAGPVQVEFLDEDASRMKVD 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                     +  +    D ++   F           N   VSMGNP+ +  +E ++   
Sbjct: 119 MGYAAFGADSIHAVGFEGDMINESVFFCDNF-----YNITCVSMGNPNCVVMME-EISKN 172

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G  +     F   +N+ +  V   E++ +  +ERG G T A G+ ACA+  A+  
Sbjct: 173 KALHLGPYVENSKYFPNRINMQLCHVVDRENIQIEIYERGAGYTYASGTGACAAASAAHK 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
           L      V V M GG LL+E+ +++ VFMTG     + G + +    +
Sbjct: 233 LGLVGNRVQVHMQGGDLLVEFAEDDRVFMTGPV--VYIGSITLAENFF 278


>gi|288819073|ref|YP_003433421.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
 gi|288788473|dbj|BAI70220.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
 gi|308752656|gb|ADO46139.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6]
          Length = 279

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 122/290 (42%), Gaps = 34/290 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---------HDNITSDAINALSTDDNTHFDQIMLIHDFQ 56
           + F K+ G GN  +V D R           +  +    I   +       D ++LI    
Sbjct: 1   MRFVKLHGSGNDFVVFDNREGEVYQFIKSVNITLKDFVIKVCAPHTGVGADGVILIEHPD 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDG- 114
           D   D   +  N DGS    CGNG RC VRF        +   FET+ G++ A+   +G 
Sbjct: 61  DPQNDFKWQFFNSDGSVAGMCGNGSRCAVRFAYENGIAGEYVRFETLVGVIQAQVLEEGK 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + V + EP    +                 +    +    +   ++ G PH +  V+ D
Sbjct: 121 RVKVLLTEPHSYRE-----------------MQIKVNGTEISGSFINTGVPHFVMLVD-D 162

Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           L ++D+ ++G  +  H  F   G N++  +  S  S+ +RT+ERGV   T ACG+ A AS
Sbjct: 163 LENFDVFTYGRAIRFHEAFSPGGTNVNFVKTLSDGSISVRTYERGVENETLACGTGATAS 222

Query: 233 VVASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
            + +        + V VK  GG  L I++      VF+ G   K ++G L
Sbjct: 223 AIVAYQKGLVKKKPVEVKTRGGETLRIDFDSQLKKVFLEGSVYKVFDGFL 272


>gi|302526201|ref|ZP_07278543.1| diaminopimelate epimerase [Streptomyces sp. AA4]
 gi|302435096|gb|EFL06912.1| diaminopimelate epimerase [Streptomyces sp. AA4]
          Length = 286

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 116/279 (41%), Gaps = 9/279 (3%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61
           S  + F KM G GN  +V+D+R      + D   AL+        D I+ I   +  +  
Sbjct: 2   SPTLAFTKMHGCGNDFVVLDLRDAPAP-SPDLCRALADRHTGVGCDLILGIRPPRSTTAV 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET--IRGILVAKENRDGSISVD 119
           A   I   +G     CGNG RCV  +L      +  +FE     G    K   D   S+ 
Sbjct: 61  AAFEIWTGEGESSLQCGNGARCVASWLVRAGLARPPSFEIDSPSGTHPVKVLGDNEFSIG 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P    + IPL        RD ++   +           S GNPHA+  V+ D+    
Sbjct: 121 LTVPRFAPEEIPLTG---FAGRDGWYEAVLADGTSVRFAAASTGNPHAVLEVD-DVGGGS 176

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +A  G  +   P     VN+  A V + + + LR  E G G T ACGS ACA+       
Sbjct: 177 VARLGPAVRALPGLPPTVNVGFAEVVARDRIRLRVHEFGAGETLACGSGACAAAAVLIRA 236

Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277
            +  R V+V++ GG L + W  +   + + G A   +EG
Sbjct: 237 GRLGRDVAVEVPGGELRVGWPSEEEPIVLAGPAVTVYEG 275


>gi|94265419|ref|ZP_01289171.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
 gi|93454076|gb|EAT04411.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
          Length = 279

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 114/288 (39%), Gaps = 27/288 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R      T+      A+     +   D ++LI + +    D 
Sbjct: 5   ITFTKMSGAGNDFILIDHRRPLLADTAAQGFARAVCERKFSVGADGLILIENSE--EADF 62

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
             +  N DGS  + CGNG RC  RF                G  + +    G+  +    
Sbjct: 63  SWQFFNADGSLAEMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISGTAVLLTMT 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P    +L               H+       L     V  G PHA+ F + ++    +  
Sbjct: 123 PPGQCRL-------------NLHLAGPTGEEL-TLHTVDTGVPHAVLFCD-EIATVPVKE 167

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +G+    HP F   G N++     +   L +RT+ERGV   T ACG+ A A+ + +  L 
Sbjct: 168 WGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVASRLG 227

Query: 241 KTNRAVSVKMLGG-GLLIEWHDNNH----VFMTGEAKKEWEGKLDIKT 283
           +     +V   GG  L+I + D++     V + G A   ++G L  + 
Sbjct: 228 RAVSPTTVVTAGGEELVIHYRDSDEQFQDVRLEGPADFIYQGSLHPEA 275


>gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
 gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
          Length = 293

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 120/293 (40%), Gaps = 36/293 (12%)

Query: 21  IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76
           +D R   +      DA+   + +     D ++L+        D  + I N DGS  E   
Sbjct: 1   VDNRESAEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59

Query: 77  CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           CGNG+RC+ RF+           +S+   T  G ++     DG + VDMG PIL+   IP
Sbjct: 60  CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGN 185
                   D                   VSMGNPH + F E       DL    L   G 
Sbjct: 120 TLLPG-HFDGTVIQKPLEVDGKTWLVTCVSMGNPHCVTFGEEHEEHLFDLSTLPLEKIGP 178

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG------------------LTAACGS 227
           L   H  F +  N     V SL  L +R WERG G                  +T ACG+
Sbjct: 179 LFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLACGT 238

Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
            ACA+ VA+    +  +   V + GG L +EW  ++ HV+M+G A+  + G L
Sbjct: 239 GACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291


>gi|163782547|ref|ZP_02177544.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882120|gb|EDP75627.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 278

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 32/289 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--------SDAINALST-DDNTHFDQIMLIHDFQ 56
           +DFAK++G GN  ++ID R                + I  L         D ++LI + +
Sbjct: 1   MDFAKLQGSGNDFILIDNRDGKVYRKIEELGVCLKEFILKLCEPHRGVGADGLILIEEPE 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGS 115
           D + D   +  N DGSE + CGNG RC VRF           +FET+ G++ A+    G 
Sbjct: 61  DNANDFRWQFFNSDGSEAEMCGNGSRCAVRFCYDLGIVDDRVSFETLAGVIRAEVLEGGK 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
                  P  +                                 ++ G PH +  V+ D+
Sbjct: 121 RVKVQLTPPSEP----------------LEKTLRVEGTDLEGVFINTGVPHFVVPVK-DI 163

Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233
              D+   G  +  H     +G N++     + +++ +RT+ERGV   T ACG+ A A  
Sbjct: 164 DKVDVKKLGRAIRFHEEFQPKGTNVNFIEAVAEDTIKIRTYERGVESETLACGTGATAGA 223

Query: 234 VASGCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
           + +      +R  V V       L +++ +N   VF+ G   K +EG L
Sbjct: 224 IVAYLKGLVSRKPVQVITKSEEVLGVDFDENFREVFLNGAVYKVFEGTL 272


>gi|284164080|ref|YP_003402359.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511]
 gi|284013735|gb|ADB59686.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511]
          Length = 276

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 14/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-ASVDAFI 64
           V F K  G GN  L+I       +  + A      DD    D I+ +   +        +
Sbjct: 3   VPFQKYHGTGNDFLIIQADEYVPDRGALAERECDRDDGVGADGILYLALEERFHPPRVIM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            ++  DG+    CGNG RC   +        S   +T  G L A    +G I+++MG P 
Sbjct: 63  TLVQPDGATAPMCGNGARCAADWAMEETGSDSVMIDTQAGTLRADRTDEG-ITIEMGTPT 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+       + +         +      +V+ G PHA+ FV+D     DL +  
Sbjct: 122 FAPDEVPVRADEQVFEEE---------IEGLEVTMVNTGVPHAVAFVDDV-DDVDLEAVA 171

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243
             +     F  G N+++A        D RT+ERGV   T +CG+ A A  V +  L +T+
Sbjct: 172 PRVRYADAFPVGTNVTLASPDGEGGFDQRTYERGVEGETDSCGTGAVAIAVVARRLGRTD 231

Query: 244 -RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
              V V   GG L + ++D  +  + G  + E++G++ +++
Sbjct: 232 ADPVDVYPPGGDLRVSFNDRGNATLAGPVEHEFDGEVTVRS 272


>gi|94969649|ref|YP_591697.1| diaminopimelate epimerase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551699|gb|ABF41623.1| diaminopimelate epimerase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 260

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/276 (26%), Positives = 110/276 (39%), Gaps = 19/276 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + FAK    GN  LVID     DN +  +       +    D +  I     +  D   R
Sbjct: 4   IPFAKASACGNDFLVIDFAHAGDNPSELSRRLCDRHNGVGADGVEWILP--TSEADIEAR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +IN DGSE +  GNG RCV   ++           T  G+   +       S +    + 
Sbjct: 62  LINADGSEAEVSGNGTRCVAACISDHTGATKIRILTGAGVKACELTVHNGTSFEFKAAMG 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               I    +      +                 +S GNPH + FVE+    + +    +
Sbjct: 122 KP-EIAGELTVKTRHHET------------TGIQLSTGNPHFVIFVEEFEEGWQV--LAD 166

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
            +A+ P F  G N+   +V    SLD+R +ERGVG T + G+ +CAS VA+    K    
Sbjct: 167 SVARTPHFPLGTNIEFVKVLDRHSLDVRLYERGVGETQSSGTGSCASAVAAIHSGKCESP 226

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           V V   GG   +EW  +  + +TG A     G+  I
Sbjct: 227 VRVATPGGAQTVEW--SGEITLTGPATIVCTGEFFI 260


>gi|149918260|ref|ZP_01906752.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1]
 gi|149821020|gb|EDM80427.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1]
          Length = 286

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 117/291 (40%), Gaps = 23/291 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--------NALSTDDNTHFDQIMLI 52
           M ++ + F K+EG+ N  LV+D+R     +  + +                   D ++LI
Sbjct: 5   MGATPLPFVKVEGLSNDFLVVDLRDAGPAVLDETVAWAREHAPRVCDRRRGVGGDGLLLI 64

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              Q A   A + ++N DGS  + CGNG+RCV   L  R   +S                
Sbjct: 65  GPGQSAGAAASMIVVNADGSRPEMCGNGLRCVAAELAPRSDERSAFVVDTDAGPRP---- 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
                     P      + +     ++  +            R    V +GNPHAI FV+
Sbjct: 121 ----CAVTRAPGSASARVRVEMGTRRITGE---HTLELEDAPRTFVAVDVGNPHAIAFVD 173

Query: 173 DDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
                  LA      +           N+  AR  +  S+ L  WERGVG+TAACG+ AC
Sbjct: 174 ASEDPEALARSLGPAIELHPIFAPAKTNVEFARFEADGSVTLWVWERGVGITAACGTGAC 233

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A++ A+         +AV +++ GG L IE  +   + MTG A+  + G  
Sbjct: 234 ATLAAAIHRDLATVGQAVDLRLPGGPLTIEQDEAGAIVMTGPARAVFRGHW 284


>gi|297619464|ref|YP_003707569.1| diaminopimelate epimerase [Methanococcus voltae A3]
 gi|297378441|gb|ADI36596.1| diaminopimelate epimerase [Methanococcus voltae A3]
          Length = 318

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 29/304 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +V +        + +  +  N +     +   D ++ +     A  D
Sbjct: 13  LEFTKMHALGNDYIVFNELDGIIVPEELKGEFSNKICKRGFSVGADGVIFVQVPSTADYD 72

Query: 62  A--FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRD---- 113
           A    RI N DGSE + CGNG+RC  +++  R   K+     ++  G+ +++   +    
Sbjct: 73  ADVRFRIFNSDGSEAEMCGNGIRCFSKYVHERTNFKNNPLKVQSEGGLRISEMEFNESNN 132

Query: 114 ---GSISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG-- 163
               ++ V MG P    K IP+         + M+ +            +    +S+   
Sbjct: 133 EVVKNVRVYMGNPKYAMKDIPMIIEEIGEDLEFMNLELPVNCECLKKIGKEALKLSVANV 192

Query: 164 --NPHAIFFVEDDLYHYDLAS----FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
                 I   E+DL    +       G  +  H  F E +N+    + + + + + TWER
Sbjct: 193 GNPHTVIILQENDLNVEFIRKNLNELGAYMECHSAFPEKINVHFINLLNEKEIQIITWER 252

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWE 276
           G G T ACG+   +SV     L KT   V   + GG L IE  +N + ++M G A+  ++
Sbjct: 253 GAGYTTACGTGTTSSVAICEKLGKTGCKVLAHLDGGDLEIEIMNNGNDIYMKGGAEISYD 312

Query: 277 GKLD 280
           G L 
Sbjct: 313 GILK 316


>gi|228473684|ref|ZP_04058434.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274898|gb|EEK13713.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624]
          Length = 353

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 45/295 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
            ++ F K +G GN  ++ID R        T               D ++L+    D   D
Sbjct: 87  RVIHFYKYQGTGNDFILIDNRLNTFPKEDTKLVAQLCERRFGVGGDGLILLE--DDPEHD 144

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +   N DG+    CGNG RC+V F      ++++  TF    G+  A           
Sbjct: 145 FSMIYYNSDGNPSSMCGNGGRCIVAFAQKLGVIQKEETTFSAPDGLHKAL---------- 194

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                           F             +   ++    ++ G+PH +  V++      
Sbjct: 195 ----------------FKNNLIHLQMQDVSHIEKVKKGLFLNTGSPHYVEVVKNLDSMDV 238

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
                 +    P   EGVN++           +RT+ERGV   T +CG+ A A+ +A   
Sbjct: 239 KKKGAEIRYGVPFNIEGVNVNFVEPIDENHFKVRTYERGVEDETYSCGTGATATAIAMYK 298

Query: 239 LHKTNRA-VSVKMLGGGLLIEW-----------HDNNHVFMTGEAKKEWEGKLDI 281
             KT    + ++  GG L + +            +  +V++ GEA   +EG + +
Sbjct: 299 GGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEANFVFEGTITV 353


>gi|21224138|ref|NP_629917.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)]
 gi|6014918|sp|O69969|DAPF_STRCO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2995301|emb|CAA18330.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)]
          Length = 289

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 116/307 (37%), Gaps = 39/307 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       ++   A+ AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHP 59

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109
                 A  + F+   N DGS  + CGNG+R   R+L              T  G+    
Sbjct: 60  EARGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G ++V MG  +L    + ++                          V+MGNPHA+ 
Sbjct: 120 IAKNGDVTVGMGRALLPAGDVEVSV----------------GEREWPARNVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV  DL H          A    + +GVN+          + +R  ERG G T +CG+ A
Sbjct: 164 FV-ADLDHAGDLYAPPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A +       V + GG L+I    +  + MTG A    EG+ D  
Sbjct: 223 CAVAVATARRDGLDPAATGTPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD-- 280

Query: 283 TGKWIKK 289
              W++ 
Sbjct: 281 -SAWLEG 286


>gi|15669306|ref|NP_248111.1| diaminopimelate epimerase [Methanocaldococcus jannaschii DSM 2661]
 gi|2494042|sp|Q58519|DAPF_METJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|1591758|gb|AAB99120.1| diaminopimelate epimerase (dapF) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 295

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 135/291 (46%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTD-DNTHFDQIMLIHDFQDASVD 61
           ++F KM  +GN  +VI+          +       +     +   D ++ I        D
Sbjct: 1   MEFTKMHALGNDYIVINEFDGEKVKEEEKAEFSRKICRRGFSVGADGVIFIQKPTSDEYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGS----I 116
              RI N DGSE + CGNG+RC  +++  R+ +K+    ET  G+ V++   +G     I
Sbjct: 61  VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173
            V MG P    K IP+     K D +  +        +L      VV++GNPHA+ FVED
Sbjct: 121 KVYMGVPKFKLKDIPMVVDGYKEDDEFLNGELKLKNPYLPKVKLSVVNVGNPHAVIFVED 180

Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D     L   G  +  H  F E +N+   +V +   + + TWERG G T ACG+ 
Sbjct: 181 NNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTACGTG 240

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ASV+ +  L KTN  V   + GG L IE  D+  V+M G+A   ++ KL
Sbjct: 241 TTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290


>gi|317152316|ref|YP_004120364.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942567|gb|ADU61618.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2]
          Length = 283

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 118/282 (41%), Gaps = 19/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  +VID R      T     A    +       D +  + D  +  +D 
Sbjct: 8   VPFHKMQGCGNDFVVIDNRVARVPATVMADWAKKICARAFGVCADGLFFLEDPDEPGLDY 67

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGN  RC  +   +         F T  G + AK   DG  +  + 
Sbjct: 68  RWHFYNSDGSRAEMCGNASRCAGKLAHALGLAPAEHVFGTDAGPIRAKVLLDGPDAGRVK 127

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +   K +    S D  +                      G PHA   + DD+   ++ 
Sbjct: 128 VQLTPPKGLETNISLDVDN------------TPMTVHFADTGVPHA-VVLVDDVAAVNVR 174

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  L  HP F   G N++ A+V    ++ LRT+ERGV   T ACG+ ACA+ + +  L
Sbjct: 175 ELGRSLRFHPRFAPAGTNVNFAQVKDRSTMLLRTFERGVEDETYACGTGACATQLVANAL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             T+    +   GG +L  + +NN +F+ G A+  ++G+L +
Sbjct: 235 GLTDPRADLTTTGGEILTVFLENNTIFLQGAAELTFKGELYL 276


>gi|284036374|ref|YP_003386304.1| diaminopimelate epimerase [Spirosoma linguale DSM 74]
 gi|283815667|gb|ADB37505.1| diaminopimelate epimerase [Spirosoma linguale DSM 74]
          Length = 257

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 37/285 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +DF K +G GN  ++ID R         A              D ++L+ +  D   D  
Sbjct: 1   MDFFKYQGTGNDFILIDDRARTFPAADQAFIEHLCHRRFGIGADGLILLQN--DPEYDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+VRF        S T F  + G  +A  +           
Sbjct: 59  MVYFNADGAEGSMCGNGGRCIVRFAHDLGLFDSETRFLAVDGEHLAMVSD---------- 108

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                + I L                      +    ++ G+PH + FV+D      +A 
Sbjct: 109 -----ESISLK-----------MTDVTGIEDRQGLTFLNTGSPHVVRFVDDLESFDVVAE 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             ++    P    G N++ A+V    ++ +RT+ERGV   T +CG+   A  + +     
Sbjct: 153 GRSIRYSEPFQPGGTNVNFAQVVDENTVFVRTYERGVEDETYSCGTGVTAVALVAHQQLG 212

Query: 242 TNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281
               V ++ LGG L + ++       + +++ G AK+ + G + +
Sbjct: 213 MPAPVFIRTLGGNLRVSFNPQPNGGFDSIYLIGPAKRVFAGTITV 257


>gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
 gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
          Length = 1355

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 27/300 (9%)

Query: 1    MQSSMVD--FAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQD 57
            M++  +   F KM G GN  +  D      N      +           D ++L+     
Sbjct: 1064 MRTEKIKANFTKMHGCGNDYIYFDCFQHDINNPEALSVRLSDRHYGIGGDGVILVCPSDV 1123

Query: 58   ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRD 113
            A  D  +R+ N DGSE + CGNG+RCV +FL         ++  T ET+ GI       +
Sbjct: 1124 A--DGKMRMFNLDGSEGKMCGNGIRCVGKFLYDHGLVDPAKEKITVETLSGIKTLWPIYN 1181

Query: 114  GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF--- 170
                  M   +   +L P     D                + N      G  + +     
Sbjct: 1182 DRKVCAMKVDMGKAELTPALIPVDASKLP-----DPKADRIVNAPYTVDGVEYHVTCVSM 1236

Query: 171  -------VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
                    ++D+   D+   G       +F E VN    RV    +L +R WERG G T 
Sbjct: 1237 GNPHCVVFKNDVETMDIEKIGPAFETSELFPERVNTEFIRVLDDHTLKMRVWERGSGETW 1296

Query: 224  ACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            ACG+ ACA+ VA+      K +  ++VK++GG L+I + D+  V+MTG A   +EG ++I
Sbjct: 1297 ACGTGACAAAVAAVENGYCKKDTDITVKLIGGDLVIRYTDD-TVYMTGNAVTVYEGVVEI 1355


>gi|255534747|ref|YP_003095118.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10]
 gi|255340943|gb|ACU07056.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10]
          Length = 262

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 114/285 (40%), Gaps = 36/285 (12%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDA 62
            ++ F K  G GN  ++ID R    +   + +            D ++L+   +DA+ D 
Sbjct: 7   HLMTFYKYHGTGNDFVMIDNRNLLFSKDKNLVSRLCDRRFGIGGDGLILLE--EDAAADF 64

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMG 121
            +   N DG+E   CGNG RC+V F         + TF  I G+  A+            
Sbjct: 65  RMVYYNSDGNESTMCGNGGRCIVAFAKFLDIFDVNTTFMAIDGLHEAEITNG-------- 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                            +D                  V++ G+PH + +V D       A
Sbjct: 117 -----------TVKLKMIDVQSIEKDG-------ECSVLNTGSPHFVQWVADLGNLDVRA 158

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +   +       +EG+N++ A   S   + +RT+ERGV   T +CG+ A A+ +      
Sbjct: 159 NGNKIRNSATYRNEGINVNFAEKISDSQIFVRTYERGVEDETFSCGTGATAAALDFLKNG 218

Query: 241 KTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
                V VK+LGG L I    N      +++ G A++ + G++++
Sbjct: 219 -NRNEVEVKVLGGNLKIYAKQNAGSFTDIWLEGPAEQVFTGEINL 262


>gi|662868|emb|CAA87006.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
          Length = 284

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 11/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F K   +GN  LVI+ +     +T + I  +         D  +L+           +
Sbjct: 1   MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDG-ILLGPLASTKAQFAL 59

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI N DGSE +  GNG+R      +    +  K F+ ET  GI+ +     G  + V+MG
Sbjct: 60  RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++ +++  +       +      ++GNPH +  ++ D+      
Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLD----EGIFTFCAATIGNPHCVILLD-DINSEVAR 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           +FG +   +P+F    N+   +V    ++ +  WERG G T A   ++ A+   +  L  
Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLA-SGSSSAAAATAHKLGL 233

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +  + VKM GG +LI+  D+ H+ MT    K  +G+L
Sbjct: 234 CDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 271


>gi|256784782|ref|ZP_05523213.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289768669|ref|ZP_06528047.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289698868|gb|EFD66297.1| diaminopimelate epimerase [Streptomyces lividans TK24]
          Length = 289

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 116/307 (37%), Gaps = 39/307 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       ++   A+ AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHP 59

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109
                 A  + F+   N DGS  + CGNG+R   R+L              T  G+    
Sbjct: 60  EARGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G ++V MG  +L    + ++                          V+MGNPHA+ 
Sbjct: 120 IAKNGDVTVGMGRALLPAGDVEVSV----------------GEREWPARNVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV  DL H          A    + +GVN+          + +R  ERG G T +CG+ A
Sbjct: 164 FV-ADLAHAGDLYAPPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A +       V + GG L+I    +  + MTG A    EG+ D  
Sbjct: 223 CAVAVATARRDGLDPAATGIPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD-- 280

Query: 283 TGKWIKK 289
              W++ 
Sbjct: 281 -SAWLEG 286


>gi|326335390|ref|ZP_08201578.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692455|gb|EGD34406.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 268

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 114/296 (38%), Gaps = 47/296 (15%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +++ F K +G GN  ++ID R        T               D ++++ +  D+  D
Sbjct: 2   TVIHFYKYQGAGNDFIMIDNRMNTFPKEDTKLIARLCERRFGVGADGLIILEN--DSKTD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +   N DG+    CGNG RC+V F      + +   TF    G+  A           
Sbjct: 60  FSMIYYNSDGNPSTMCGNGGRCIVAFAQKLGVIDKTETTFSAPDGLHKAF---------- 109

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                           F             +   ++    ++ G+PH +  V+ DL   D
Sbjct: 110 ----------------FKNDLIHLQMQDVSDIEKVKKGLFLNTGSPHYVEIVK-DLDSMD 152

Query: 180 LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  +    P   EGVN++     +     +RT+ERGV   T +CG+ A A+ +A  
Sbjct: 153 VKKKGAEIRYGVPFNIEGVNVNFVEPIADNRFKIRTYERGVENETYSCGTGATATAIAMH 212

Query: 238 CLHKTNRA-VSVKMLGGGLLIEW-----------HDNNHVFMTGEAKKEWEGKLDI 281
              KT    + ++  GG L + +            +  +V++ GEA+  +EG + I
Sbjct: 213 KTGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEAEFVFEGTISI 268


>gi|260889902|ref|ZP_05901165.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254]
 gi|260860508|gb|EEX75008.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254]
          Length = 283

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 10/280 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  +++  R   +    +    A            D ++++        
Sbjct: 1   MLKFEKYQGAGNDFIIVTERELIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             F+   N DGS+   CGNG+RC   +      ++   F  +T+ G L+ + N D     
Sbjct: 60  --FMFFFNGDGSQAPMCGNGIRCFSHYLVNNHLVEGDEFVVKTVPGDLMIRVNYDEEKDD 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                 +   +  +    +                      + MG  H++ FV D   + 
Sbjct: 118 FSARVNMGKPVFNVKDLINTEKEQFLREKINVDGTEIEISYIFMGTDHSVIFVNDFNDYN 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                  +     +F + VN++  +V   + +++ TWERG G T ACG+   AS V +  
Sbjct: 178 IDEFGKKIENYTDLFPKKVNVNFVKVHDRKHMEVITWERGAGRTLACGTGVTASAVLAKT 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               +  V+VK+ GG L+IE+    +  FMTG ++K  EG
Sbjct: 238 FGFVDEKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277


>gi|126642666|ref|YP_001085650.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978]
          Length = 240

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 45  HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETI 102
            FDQ++++        D   RI N DGSEV+ CGNG+RC            + + T +T 
Sbjct: 2   GFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTK 61

Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
            GI+  +  ++G + V+MG P      IP      +           N        VV+M
Sbjct: 62  AGIVKPELGQNGWVRVNMGYPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNM 117

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNPHA+  V  D+   D+A  G  +  H  F E VN    +V   + + LR +ERGVG T
Sbjct: 118 GNPHAVTIV-PDVLTADVAGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGET 176

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            ACG+ ACA+ V+         +V V++ GG L IEW + + V+MTG     ++G+LD++
Sbjct: 177 LACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 236


>gi|229130197|ref|ZP_04259156.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4]
 gi|228653130|gb|EEL09009.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4]
          Length = 268

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +  +     +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGESET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + + ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263


>gi|218510924|ref|ZP_03508802.1| diaminopimelate epimerase [Rhizobium etli Brasil 5]
          Length = 278

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 126/274 (45%), Gaps = 15/274 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           DF KM   G+  +++D+RG  + I  +    L        F++++++ D +DA+    + 
Sbjct: 4   DFQKMHANGDDFVIVDLRGQENIINRNIAQRLGDRNRGIGFNKLVVMGDCEDAAT--QLT 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS + +CG+  R V   L           +T RG+L      DG ISVDMG+P+L
Sbjct: 62  FWNSDGSMLDACGSATRGVAWKLAGNRLFFRRR-QTNRGLLTCFGELDGRISVDMGKPLL 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W+ +P+A+  D +                 P   SMGNPH  FF+E DL   D    G 
Sbjct: 121 HWRDVPIAQEADTLKL----------PLPGAPSACSMGNPHCTFFIE-DLEAVDAKMRGL 169

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245
               HP+F +  N+   +V S   + LR WERG G+    GS +C +VV          +
Sbjct: 170 EFESHPLFPQKTNVHFVQVISPTRIRLRIWERGGGIPLGSGSCSCGAVVNGIRRGLLTSS 229

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           V V+  GG + + W     VF+TG     + G  
Sbjct: 230 VDVECDGGTVAVRWDGYGGVFLTGPVDPNFCGTW 263


>gi|323699307|ref|ZP_08111219.1| diaminopimelate epimerase [Desulfovibrio sp. ND132]
 gi|323459239|gb|EGB15104.1| diaminopimelate epimerase [Desulfovibrio desulfuricans ND132]
          Length = 283

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 113/283 (39%), Gaps = 19/283 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V F KM+G GN  +VID R     +++    A    +       D +  + +  + S+  
Sbjct: 8   VPFYKMQGCGNDFVVIDNRELGVPVSAMADWAKAVCARAFGVCADGLFFLENADNPSLAF 67

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGN  RC  +      +      F T  G + AK   DG       
Sbjct: 68  RWHFYNSDGSRAEMCGNASRCAAKLAHAIGLAPAELAFGTDAGPIRAKVLLDG------- 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P      + L             +                G PH + FV+ D+   D+ 
Sbjct: 121 -PEEGRVKVQLTPPLRTETDIVIDVDGS----PLTVHFTDTGVPHTVVFVD-DVKSVDIM 174

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239
             G  +  H  F   G N++ A+V   +++ LRT+ERGV   T ACG+ A A+ + +  L
Sbjct: 175 DLGPKIRYHERFAPAGTNVNFAQVLDEKTMLLRTYERGVEAETYACGTGAAATQLLAHTL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             T     +   G  +L  + +N  VF+ G A+  ++G+  +K
Sbjct: 235 GLTGDHADLTTTGNEVLTVFLENGMVFLQGAAELTFQGEFYLK 277


>gi|254495530|ref|ZP_05108454.1| Diaminopimelate epimerase [Polaribacter sp. MED152]
 gi|85819886|gb|EAQ41043.1| Diaminopimelate epimerase [Polaribacter sp. MED152]
          Length = 256

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 115/285 (40%), Gaps = 40/285 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R        +D I+ +         D I+LI   +DA  D  
Sbjct: 3   LPFLKYQGTGNDFVMIDNRTKIFPKKNTDKISEICDRHFGIGADGIILIE--EDADYDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DGSE   CGNG RC V F    +M  +  TF  + G   A  N D         
Sbjct: 61  MIYYNADGSET-FCGNGARCAVAFAKHLKMIDQETTFTAVDGSHFASVNNDF-------- 111

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                  I         N      G  H +  V +DL  Y +  
Sbjct: 112 ------------------ISLQMIDVSEFQVKENSIFTYTGTQHHVEMV-NDLEEYPVYE 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  +      + G N++ A+  +  +  +RT+E+GV   T ACG+   A  +A     K
Sbjct: 153 NGRKIRN-SYENPGSNVNFAQQLNDTTFRVRTYEKGVENETLACGTGVTAVALAMHKTGK 211

Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           TN   +S+ + GG L + + + N    +VF+ G A   ++G+++I
Sbjct: 212 TNSNNISLPVEGGLLEVSFKEENGVYTNVFLKGPATFIFKGEIEI 256


>gi|332519676|ref|ZP_08396140.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4]
 gi|332044235|gb|EGI80429.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4]
          Length = 259

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 111/283 (39%), Gaps = 39/283 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  + ID R    N   T    +          D ++L+ +  DA+ D  + 
Sbjct: 5   FYKYQGTGNDFVFIDNRQEQFNKNNTKLIAHLCDRRFGIGADGLILLEN--DATADFKMV 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DG+E   CGNG RC+V F           TF  I GI  A  N             
Sbjct: 63  YFNADGNESTMCGNGGRCIVAFAEKLNIINGKTTFNAIDGIHEATINDGF---------- 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                                         ++   ++ G+PH +  V +++  +D+ + G
Sbjct: 113 ----------------VKLKMQDVDTIKVNKDHTFLNTGSPHHVALV-NNIKQFDVKTEG 155

Query: 185 NLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +    ++   G N++        +  +RT+ERGV   T +CG+   A  +A   L K 
Sbjct: 156 AAIRYGDLYDAAGTNVNFVEPLDNSTFSVRTYERGVEDETLSCGTGVTAVALAMHTLKKA 215

Query: 243 NR-AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280
           N   VS+ + GG L + +        ++++ G A   ++G+++
Sbjct: 216 NTQEVSLNVEGGTLKVSFEKTTNGYKNIWLQGPATLVFKGEIE 258


>gi|228910772|ref|ZP_04074581.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200]
 gi|228848723|gb|EEM93568.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200]
          Length = 268

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+      +     +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEETIFTIETLAGIVTAEVTVKDGVVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + + ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263


>gi|194333117|ref|YP_002014977.1| diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271]
 gi|194310935|gb|ACF45330.1| Diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271]
          Length = 264

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/285 (28%), Positives = 123/285 (43%), Gaps = 29/285 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M +S + F+KM G GN  +V D      ++++D I +L         D ++LI     A 
Sbjct: 1   MNTS-IKFSKMSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIEPS--AR 57

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  ++  N DG     CGNG RC V F  +     + T     G               
Sbjct: 58  FDFAMKYYNADGLPGSMCGNGGRCAVYFAWTIGACGTTTAFEANGNR------------- 104

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
               + D + I L        RD F           +   V+ G+PH I F + +L  +D
Sbjct: 105 YDAWVCDNEAIRLKMILPHDFRDEFGSNG------LSCNFVNTGSPHTIIFTD-ELDTFD 157

Query: 180 LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237
           + S G L+     +F EG N++  +VTS ESL +RT+ERGV   T ACG+ A A+ + S 
Sbjct: 158 VESTGRLIRNDSKLFPEGTNVNFLQVTSPESLKVRTYERGVEAETLACGTGAVAAALMSY 217

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
            L K            G  L I++ ++   V+++G A   + G +
Sbjct: 218 KLGKIASRSVSVSVRSGDILTIDFSEDMQDVYLSGPATIVYTGSI 262


>gi|94987337|ref|YP_595270.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731586|emb|CAJ54949.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00]
          Length = 281

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 104/284 (36%), Gaps = 20/284 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F K+ G GN  + ID R        ++S A            D I        A  D 
Sbjct: 10  IEFFKLHGCGNDFVFIDNRSLFIPKEKMSSWAEVICRRKRGVGADGIAFFELSTIAGADY 69

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
                N DGS  + CGN  RC+                +    L++     G    D   
Sbjct: 70  MWHFFNSDGSRAEMCGNASRCMGVLAVKIGLANMQHTLSTDAGLIS--ITVGDELQDATV 127

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            + D   I L  S +                 +    V+ G PH + F ++ + +  +  
Sbjct: 128 TMTDPTNILLNVSLEV------------EKETQQVHFVNTGVPHLVVFHDNLIDYDIIPK 175

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              L        EGVN++  ++ S  S+ +RT+ERGV   T ACG+  CASV+ +  L  
Sbjct: 176 GKLLRGHSHFSPEGVNVNFVKIESPNSMFVRTYERGVEDETLACGTGVCASVIIANQLGL 235

Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284
               V V      + IE + +N  V M G     + G+L +   
Sbjct: 236 VGTNVKVMTASKEI-IELNLNNGKVLMKGPVVHVYTGQLQLSEL 278


>gi|193214645|ref|YP_001995844.1| diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110]
 gi|193088122|gb|ACF13397.1| Diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110]
          Length = 271

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 31/287 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           M+ +++ F KM G GN  +VID R    + +    I  L T       D ++++   +  
Sbjct: 1   MKRNIL-FTKMSGAGNDFIVIDNRDGAYSFLGEAEIRQLCTRRIGIGADGLLMLEGSE-- 57

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSI 116
           + D  +R  N DG     CGNG RC+ +F        +K   FE       A    DG I
Sbjct: 58  NHDFAMRYYNADGRLGSMCGNGGRCIAQFGWKLGDAAKKELKFEANGNTYFASVLADGEI 117

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            ++M  P        +                           V  G+PHAI +VE+   
Sbjct: 118 KLNMLVPKDFRDAFSVDG--------------------HECVFVDTGSPHAILYVENLDE 157

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            + +     +      F  G N++  ++ S E + +RT+ERGV   T ACG+ A AS + 
Sbjct: 158 THVVEIGQKIRHNQEHFPGGTNVNFVQILSSEKIRVRTFERGVEDETLACGTGAVASALM 217

Query: 236 SGCLHKTNRA-VSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279
           S  L K +   V V +  G  L I + +   HV ++G A + ++G++
Sbjct: 218 SYRLGKVSAKSVCVAVQSGDLLTIAFDEEMQHVTLSGPALEVFQGEV 264


>gi|86132208|ref|ZP_01050803.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134]
 gi|85817127|gb|EAQ38310.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134]
          Length = 259

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 97/284 (34%), Gaps = 39/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K +G GN  ++ID R        T               D +ML+      S D  
Sbjct: 3   ISFSKYQGTGNDFVIIDNRLDIFPKDDTKLVAQLCDRKFGIGADGLMLLE--SHPSADFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F  +        TFE + G+  A              
Sbjct: 61  MVYYNADGNESSMCGNGGRCLVAFAKALSLIDTHATFEAVDGMHEATVKDGIVHLKM--- 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                                +  G+PH I  V  D+    +  
Sbjct: 118 -----------------------QDVAEIKTTPEYSFLDTGSPHHIKMVS-DVKTVAVKE 153

Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +         G N++  +        +RT+ERGV   T +CG+   A  +A+    
Sbjct: 154 EGAAIRYGALYGEAGSNINFVQELEDGHFAVRTYERGVEDETLSCGTGVTAVAIAAHNNG 213

Query: 241 KTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
            T+   + + + GG L + +         V++ G A   ++G+ 
Sbjct: 214 VTSKNNIQLDVEGGKLAVSFTKTATGYTDVYLIGPATFVFKGEW 257


>gi|228955200|ref|ZP_04117208.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229072425|ref|ZP_04205627.1| Diaminopimelate epimerase [Bacillus cereus F65185]
 gi|229082182|ref|ZP_04214646.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2]
 gi|228701100|gb|EEL53622.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2]
 gi|228710401|gb|EEL62374.1| Diaminopimelate epimerase [Bacillus cereus F65185]
 gi|228804333|gb|EEM50944.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 268

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +  +     +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + + ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263


>gi|237736702|ref|ZP_04567183.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817]
 gi|229420564|gb|EEO35611.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817]
          Length = 278

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 122/283 (43%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K++  GN  ++++       +++S A            D +M   + + A  D  +
Sbjct: 1   MRFSKLQAAGNDFILVNGLEYRDLDLSSTAKKVCDRHFGIGADGLMTCEESKVA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL----VAKENRDGSISV 118
              N DGS  + CGNG+RC  +F+      ++KSF+ ET  GI       +      ISV
Sbjct: 59  NYYNSDGSRGEMCGNGIRCFSKFVYDNGVVRKKSFSVETDAGIKYIDLTLESEEVKYISV 118

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG        +P     + +      +             V MG PH +  V+ D  +Y
Sbjct: 119 DMGRADFRATSVPCTLDSEIILEKEIEVEGQKLKISS----VLMGVPHTVILVD-DYDNY 173

Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           D+   G  +     +F    N++  +V   E++ ++TWERG   T  CG+  C+S V + 
Sbjct: 174 DIDRLGKAIEYSMDIFPRKTNVNFIQVVDDENIIIKTWERGASRTLGCGTGCCSSAVIAH 233

Query: 238 CLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L K    +V +   GG + + + +  +V M G A+    G+ 
Sbjct: 234 KLGKIKGNSVKLTTEGGEVFVTFDNEYNVIMKGSAETICTGEF 276


>gi|84496885|ref|ZP_00995739.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649]
 gi|84383653|gb|EAP99534.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649]
          Length = 300

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 108/297 (36%), Gaps = 17/297 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD- 61
           + + F K  G  N  +++       N+ +D +  L+        D ++ +     A+ D 
Sbjct: 5   TTLRFTKGHGTENDFVLLPDVDARLNLEADVVRRLADRQAGIGGDGVIRVVPTASATEDA 64

Query: 62  ---------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKE 110
                     F+   N DGS  + CGNG R    +L       +  FE  T  GI   + 
Sbjct: 65  VRAQAGRAPWFMDYRNADGSFAEMCGNGTRVFAAYLRREGLETADEFEIATRGGIKGIRF 124

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              G  +             P     D  D               +   V MGNPH +  
Sbjct: 125 EGSGDHATIATNMGAWRFTDPAKAETDGFDSLVLLRERPLAEDPWSALSVDMGNPHTVVA 184

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           + + +    L    ++    P+ S G N+   RV     + +R  ERGVG T +CG+  C
Sbjct: 185 LPESVDLATLD-LFHVPEVRPVPSNGTNVEFVRVVGAGHIAMRVHERGVGETRSCGTGVC 243

Query: 231 ASVVASGCLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           A+ +A+             +V + GG L +    N+ V + G A    +G +D+   
Sbjct: 244 AAALATSFWAGQAEPTQDWTVDVPGGRLRVRGLPNHEVELAGPAALVADGTVDLSAL 300


>gi|189219936|ref|YP_001940576.1| diaminopimelate epimerase [Methylacidiphilum infernorum V4]
 gi|189186794|gb|ACD83979.1| Diaminopimelate epimerase [Methylacidiphilum infernorum V4]
          Length = 273

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 24/283 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F KM G GN  +++D R     + S  I+ L         D ++++ +  D   +  +  
Sbjct: 5   FTKMHGAGNDFILLDNRRKLIQLDSSRISTLCDRHKGIGADGLLVVEN--DEGKEPRMVY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS    CGNG RC  RFL     +     E        +                +
Sbjct: 63  FNADGSRASFCGNGARCFARFLFEMENKDGEQGEVCFMTEAGRITGW---------ISGE 113

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFGN 185
              I L    +   R    I   ++   +    +  G PH + F +  +L    L   G+
Sbjct: 114 AVKITLPTPKNLTLRIPLEIEGKSYELHK----IDTGVPHVVLFEDCENLPRSTLEEIGS 169

Query: 186 LLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243
            +  H     EG N++ A       + +RT+ERGV   T ACGS   AS + S  +   +
Sbjct: 170 RIRWHKAFQPEGTNVNFAWRVGERKIKVRTYERGVEGETLACGSGVTASALISHLVLDMD 229

Query: 244 RAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
             + V +  G  L + +  +       F+ G AKK + G ++I
Sbjct: 230 CPIEVSVRSGETLKVYFVKSGPAFREAFLEGPAKKVFVGTIEI 272


>gi|313673767|ref|YP_004051878.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940523|gb|ADR19715.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 272

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 127/290 (43%), Gaps = 30/290 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDD-NTHFDQIMLIHDFQDASVDA 62
           V F KM G GN  ++ID R    + T   + +  +     +   D ++LI       VD 
Sbjct: 4   VSFWKMSGSGNDFIIIDNRTLFIDKTDFRNTVAKICKRSMSVGADGVILIEPSNK--VDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
                N DGS  + CGNG RC  RF        K   FE++ GI+ A+     S+ V + 
Sbjct: 62  KWDFYNSDGSTAEMCGNGSRCAARFCYENGIAGKQMKFESLAGIIEAEITGCSSVKVKLT 121

Query: 122 EPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P        IPL                       N   V+ G PH I    DD+Y++D
Sbjct: 122 RPSDLKLNIDIPLT------------------DLTLNGSFVNTGVPH-IAIEVDDIYNFD 162

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +  +G  +  H +F  +G N++  ++   +++ +RT+ERGV   T ACG+ + A      
Sbjct: 163 VKKYGREIRFHKLFSPKGTNVNFYKILPDKTVKIRTYERGVEDETLACGTGSAAVAFILH 222

Query: 238 CLHKTNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
                   V +   GG  L+I    +++V++ GEA+  ++G L  ++ K+
Sbjct: 223 KKSILKSPVELITTGGMKLIIHIDVDDNVYLEGEARLVYKGTLTEESYKY 272


>gi|182435520|ref|YP_001823239.1| diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178464036|dbj|BAG18556.1| putative diaminopimelate epimerase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 288

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +S + F K  G  N  +++        + +  +  L         D ++ +       
Sbjct: 1   MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK 109
                  + + F+   N DGS  + CGNG+R    +L      +    T  T  G     
Sbjct: 61  EARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G I+V MG  +L  + + ++                          V+MGNPHA+ 
Sbjct: 121 LAKNGDITVSMGRALLPGESVTVSVGDR----------------SWPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H         ++   ++ +GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVD-DLDHAGDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A +       V + GG L+I  H +  + MTG A    EG +D  
Sbjct: 224 CAVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID-- 281

Query: 283 TGKWIKKN 290
              W++ +
Sbjct: 282 -RAWLETS 288


>gi|317061200|ref|ZP_07925685.1| diaminopimelate epimerase [Fusobacterium sp. D12]
 gi|313686876|gb|EFS23711.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 278

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 17/285 (5%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           ++S  + F KME  GN  ++ D R      I   A            D I+       A 
Sbjct: 7   LRSKKMKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA- 65

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117
            D  +   N DGS  + CGNG+RC+ R++     + + + T ET  G+       D    
Sbjct: 66  -DMKMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDE--- 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                       + +     + +++               + V++G PH    VED +  
Sbjct: 122 ------KNQVSSVQVKMGKAEWEKEFQEERVEIEGREFVFYRVTVGVPHIAILVEDFMKD 175

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L  +G+ L KHP+F +  N++  ++ + + + ++TWERG G T  C +   +  V   
Sbjct: 176 EELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVILQ 235

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMT-GEAKKEWEGKLDI 281
            L K +        GG + +E  D+  V M  G+A   + G +D+
Sbjct: 236 HLQKISGEAHFYTEGGDVFVEVKDD--VVMIYGKANFVFAGDIDV 278


>gi|297156730|gb|ADI06442.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1]
          Length = 304

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 105/301 (34%), Gaps = 21/301 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + F K  G  N  +++        ++  A+  +         D ++ +            
Sbjct: 7   LAFLKGHGTENDFVIVPDPDGRLELSPAAVARICDRRAGVGGDGLIRVVRSSAHPEARGM 66

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG+R   R+L      ++          V + +     
Sbjct: 67  ADDAEWFMDYRNSDGSVAEMCGNGVRVFARYLERAGLVEAGDLAVATRAGVRRIHIAKDD 126

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                 P      + + ++          +             V MGNPHA+ FV+ DL 
Sbjct: 127 LGGTDAPGGAVT-VQMGKATLPEPGADGPVTVAVGEHSWPARHVDMGNPHAVAFVD-DLD 184

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                     +     +  G N+          + +R  ERG G T +CG+ ACA +VA+
Sbjct: 185 QAGRLFDAPAVTPGSAYPHGTNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVMVAT 244

Query: 237 GCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
                 + A        +V + GG L+I    +  V MTG A    EG+LD     W+  
Sbjct: 245 ARRDGADPAADGHPVTYTVDVPGGRLVISELPDGTVEMTGPAVIVAEGELDP---AWLDT 301

Query: 290 N 290
            
Sbjct: 302 A 302


>gi|108802950|ref|YP_642887.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941]
 gi|108764193|gb|ABG03075.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941]
          Length = 262

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 109/280 (38%), Gaps = 25/280 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M  F KM G GN  L+ D       ++   A  A         D I++      AS D  
Sbjct: 1   MTAFTKMHGAGNDFLLFDWEEVEGADLAELARRACDRHFGVGADGILV--PAPSASADLR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DGS  + CGNG+RC+ R+   R            G  V K              
Sbjct: 59  MVYRNADGSPSEMCGNGIRCLARYARDRGIVSGDVLAVETGAGVRKVALLE--------- 109

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYHYDLA 181
                         +++      G    L       VSMGNPHA+ F+  +  +   DL 
Sbjct: 110 ---------GGRASRVEMGSPAFGAPVALLGHRFVRVSMGNPHAVAFLPAEEAVERLDLR 160

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           S G  + + P F    N+    V     L +R WERG G T A GS +CA+  A+     
Sbjct: 161 SVGPRVERDPAFPGRTNVEFVCVRGPHELRMRIWERGAGETLASGSGSCAAAAAAIREGL 220

Query: 242 TNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279
               V V + GG + +EW   + + ++M G A+   EG+L
Sbjct: 221 ARGPVRVILDGGEVEVEWSGREGDPLYMRGPAEYVCEGRL 260


>gi|110667472|ref|YP_657283.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi
           DSM 16790]
 gi|109625219|emb|CAJ51639.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi
           DSM 16790]
          Length = 330

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 21/294 (7%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--------HFDQIMLIH 53
           +S++V   K  G GN  +++D      N  + A    S D             D ++ + 
Sbjct: 4   ESALVTAVKYHGTGNDFIIVDDTKEIPNRRAFAKVHCSRDTGVCHETTDRRGADGVLFLT 63

Query: 54  -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
            + Q   +   + +I  DGS    CGNG R    +   +        ET  G   A    
Sbjct: 64  INQQHTPIQVVMTLIQPDGSTAAMCGNGARVAAAWAAEQTGATEMMIETPAGTRHATL-S 122

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             +I+++MG P+   + +PL    D    D         +   +   V+ G PHA+  V+
Sbjct: 123 GDTITIEMGTPVFTPRCVPLTTDRDTALID-------EQIGSLSITAVNTGVPHAVGMVD 175

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231
            D+    L      +     F  GVN+++A +T       RT+ERGV   T +CG+ A A
Sbjct: 176 -DIDSISLNDIAPPIRHADTFPAGVNVTLAELTGATQFRQRTYERGVEDETRSCGTGAVA 234

Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
               +  +    T+  ++V+  GG L +    +    +TG  ++E++ +L + T
Sbjct: 235 IAAVACRIGIIDTDTPITVRPPGGALRVTVASDQSTTLTGSVEREFQTELTVIT 288


>gi|91215627|ref|ZP_01252597.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755]
 gi|91186093|gb|EAS72466.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 39/289 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K +G GN  ++ID R       +  I  L         D ++L+ +  D+  D  +
Sbjct: 3   LHFFKYQGTGNDFVLIDNRIPIFKNDAKFIQGLCDRRFGVGADGLILLENPSDSISDFKM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG E   CGNG RC+V F           TFE + G+  A    +      +  P
Sbjct: 63  IYFNADGKESSMCGNGGRCIVAFAKQLGIIDSETTFEAVDGLHSAIIKGETVSLKMIDVP 122

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            ++                            R    ++ G+PH + FV+ D+  +D+ + 
Sbjct: 123 TVNLS--------------------------REASFMNTGSPHHVAFVD-DVKDFDVFAQ 155

Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           G  +   P +    G N++  +V     + +RT+ERGV   T +CG+   A+ + S   +
Sbjct: 156 GRRIRNLPNYEAIGGTNVNFIQVID-GDVHVRTYERGVEDETYSCGTGVTAAAITSKMAN 214

Query: 241 KTNR-AVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLDIKT 283
           K     V V   GG L +++         ++++ G A   +EG  + KT
Sbjct: 215 KVEDLPVKVLTKGGSLEVDFEIEGLNAAKNIWLKGPATFVFEGNYNDKT 263


>gi|257126122|ref|YP_003164236.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b]
 gi|257050061|gb|ACV39245.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b]
          Length = 283

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 10/280 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  +++  +   +    +    A            D ++++        
Sbjct: 1   MLKFEKYQGAGNDFVIVAEKDLIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             F+   N DGS+   CGNG+RC   +      ++   F  +T+ G L  K N D     
Sbjct: 60  --FMFFFNADGSQAPMCGNGIRCFSNYLVNNHLVEGNEFVVKTVPGDLTIKVNYDEEKDD 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                 +   +  +    +                      + MG  H++ FV D   + 
Sbjct: 118 FSARVNMGKPVFNVKELINTEKEQFLREKINIDGKEIEISYIFMGTDHSVIFVNDFNDYN 177

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                  +     +F + VN++  +V + E +++ TWERG G T ACG+ A AS V +  
Sbjct: 178 IDEFGKKIENYINLFPKKVNVNFVKVYNREHMEVITWERGAGRTLACGTGATASAVLAKT 237

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277
               +  V+VK+ GG L+IE+    +  FMTG ++K  EG
Sbjct: 238 FGFVDTKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277


>gi|84490356|ref|YP_448588.1| hypothetical protein Msp_1579 [Methanosphaera stadtmanae DSM 3091]
 gi|84373675|gb|ABC57945.1| DapF [Methanosphaera stadtmanae DSM 3091]
          Length = 292

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 18/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDASV 60
           ++F KM  +GN  +VI+       I  +A N LS        +   D ++       +  
Sbjct: 5   IEFTKMHALGNDYIVINETETEV-IPEEAKNKLSNDICTRRFSVGSDGVIFACKSDKS-- 61

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDG 114
           D   RI N DGSE + CGNG+RC+ +++      K  T +      +       +++   
Sbjct: 62  DVRFRIFNSDGSEAEMCGNGIRCLAKYVYDNDIVKKQTMQIETMEDIKEARLTVEDDVVK 121

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           SI++DMG+     + IP        D        V+   +     VS+GNPHA+ F + +
Sbjct: 122 SIAIDMGKGFFKPEEIPAIAPSGNTDEFIDEEIDVDGEKIIMSS-VSVGNPHAVSFTDIN 180

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL  +G  +  H  F E VN+    + S   +++ TWERG G T ACG+   + V+
Sbjct: 181 IDDIDLDYYGPRIENHKAFPEKVNVHFVNIVSPGEINILTWERGAGFTFACGTGTTSCVL 240

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
               +   N  V   + GG L I   D+N      M G+A   ++ ++ + 
Sbjct: 241 LGYKMGLLNEKVHAHLSGGDLDITVSDHNEYLTATMEGKAVTVYKAQMTVD 291


>gi|330752443|emb|CBL87393.1| diaminopimelate epimerase [uncultured Flavobacteria bacterium]
          Length = 261

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 100/281 (35%), Gaps = 37/281 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +  GN  ++ID R      N T               D ++L+        D  
Sbjct: 3   INFYKYQATGNDFVIIDNRLKTFTKNNTKLIARLCDRRFGIGADGLILLELAD--GFDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG E   CGNG RC+V         +  T F  + G+  A              
Sbjct: 61  MIYYNADGKESSMCGNGGRCIVALAQRLGMIQGSTNFIAVDGLHKATIQGS--------- 111

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                          L   FVV  G+PH +    +         
Sbjct: 112 -----------------QVSLKMRDVFKTAKLGGGFVVDTGSPHCVLMRSNLSAVDVQFE 154

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              L        EG+N++  +  S E   +RT+ERGV   T +CG+   A  +A   L K
Sbjct: 155 GSQLRNSPAFKKEGINVNFVQALSTEHFAVRTYERGVEDETLSCGTGVTAVAIAMHALKK 214

Query: 242 TNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEG 277
           TN+  + ++  GG L + +   N    +V+++G A   +EG
Sbjct: 215 TNKERIDLQTNGGDLEVRFKAENSTYVNVWLSGSAHCVFEG 255


>gi|328954156|ref|YP_004371490.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109]
 gi|328454480|gb|AEB10309.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109]
          Length = 273

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 115/287 (40%), Gaps = 35/287 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM+G GN  ++ID R    +       A    +       D ++ +     A+VD 
Sbjct: 4   IPFWKMQGSGNDFVLIDHRRSFISDGERAGFARKVCAPKFGVGADGLIFLESS--ATVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
             R  N DGSE + CGNG RC  RF        +   FET+ G++ A+      + +++ 
Sbjct: 62  RWRFFNADGSEAEMCGNGGRCAARFAYLHGIAGEKMAFETLAGVIHAEVLDR-RVKLELS 120

Query: 122 EPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            P        IPL+                          ++ G PH +  +  DL    
Sbjct: 121 PPHGLRLGLEIPLSAK------------------TWTGHFINTGVPHVVLPL-ADLEAAP 161

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237
           +   G  +  H +F   G N++  R +    L +RT+ERGV   T ACG+ + A+ + + 
Sbjct: 162 VTEVGRAIRFHSLFEPAGTNVNFIRRSGFRELQVRTYERGVEAETLACGTGSVAAALIAS 221

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279
            L      V V    G  L I +         VF+ G A   ++G+L
Sbjct: 222 RLWGMASPVVVHPASGETLKIYFDAAGDIFRSVFLEGGAAVVFQGEL 268


>gi|110636553|ref|YP_676760.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279234|gb|ABG57420.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406]
          Length = 261

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 108/286 (37%), Gaps = 37/286 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R    +     I             D  +L+ +      D  
Sbjct: 3   IPFYKYQGTGNDFIIIDNRSNIFDRERRDIVAQLCDRRFGIGADGFILLQN--KEGYDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V+F          T F  + G+  A              
Sbjct: 61  MVYYNADGNESTMCGNGGRCIVQFAQDIGVMNLTTHFLAVDGVHYAFIK----------- 109

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                         +K+   +            + F ++ G+PH +  VE         +
Sbjct: 110 --------------EKLVNLQMMNVAGIDTLADDTFFLNTGSPHYVKKVEKIEQFPVFET 155

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             ++         G N++   +     L +RT+ERGV   T +CG+   A+ +A+  L  
Sbjct: 156 GKSIRYSDTFAPGGTNVNFMEMQD-NWLFVRTYERGVENETYSCGTGVTAAAIAAEKLGI 214

Query: 242 TNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282
             + V +K LGG L + +          VF+ G AK+ + G++++ 
Sbjct: 215 APQYVLIKTLGGELEVTFIKKSDGSYKDVFLIGPAKRVFTGEIEVD 260


>gi|225164023|ref|ZP_03726309.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2]
 gi|224801366|gb|EEG19676.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2]
          Length = 298

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 19/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + F K   +GN  +V++           ++  I  +         D  +L         D
Sbjct: 1   MRFYKYHALGNDYIVLNPADFPAWGAAPSTAQIRVVCHRNFGVGSDG-ILWGPLPSEKSD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--------TFETIRGILVAKENRD 113
             +RI N DGSE +  GNG+R   R+L    + +          T ET  G + ++    
Sbjct: 60  CGLRIFNPDGSEAEKSGNGLRIFTRYLWDTGRVRKNSADGTGVVTIETPGGHVRSEIRDA 119

Query: 114 GS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL----RNPFVVSMGNPHAI 168
           G  I V+MG    +   IP+  + +              + +          ++GNPH +
Sbjct: 120 GRLIQVEMGRVSFNSAQIPVTLAGEGGGGGEGRDVINEKITILDREFTFCAATIGNPHCV 179

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             +  ++       +G  L  HP F    N+   ++    ++ +  WERG G T A GS+
Sbjct: 180 LPL-PEVSAELAHKYGPHLETHPNFPRKTNVQFLQILDRANIRIEIWERGAGYTLASGSS 238

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + A+   +  L   + +V+V M GG + IE  D+  + MTG   K  EG +
Sbjct: 239 SSAAAAVARKLGLVDSSVTVHMPGGRIGIEIGDDYAIQMTGSVNKVAEGTM 289


>gi|300778706|ref|ZP_07088564.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910]
 gi|300504216|gb|EFK35356.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 36/283 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F K +G GN  +++D R          I  L         D ++L+ +  D + D  +
Sbjct: 1   MEFYKYQGTGNDFVMVDNRDLQFTKDKGIIEKLCDRRFGIGADGLILLEN--DPNYDFKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DG E   CGNG RC+V F     +      F    G   A+   +G I + M   
Sbjct: 59  VYYNSDGGESTMCGNGGRCLVAFAFFLDIFEDKCRFIATDGEHEAEI-HNGIIKLKMINV 117

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                           N FV++ G+PH + +VE+   +      
Sbjct: 118 DAVSHD-------------------------GNDFVLNTGSPHYVKYVENLKDYPVYDEG 152

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             +        +G+N++     S   + +RT+ERGV   T +CG+   AS +     H  
Sbjct: 153 YGIRNSETYKEKGINVNFVEKISDNEIFVRTYERGVEDETYSCGTGVTASALTFLQKHNL 212

Query: 243 NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
             +V VK LGG L +    +     ++++ G AK+ + GK D+
Sbjct: 213 -TSVKVKTLGGNLKVYAEKSGDSFRNIWLEGPAKQVFRGKTDL 254


>gi|284044709|ref|YP_003395049.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684]
 gi|283948930|gb|ADB51674.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684]
          Length = 289

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 17/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K + +GN   +++ R     +T   I A  +       D I+L+ +       A +
Sbjct: 1   MKFEKWQALGNDYAIVEQRDLPFELTPARIRAFCAGHFGVFADGILLLSESDQPGFVADL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGE 122
           +I N DGSE +  GNG R  + +L  R       F+ +T  G +        +  VDMG 
Sbjct: 61  KIYNPDGSEAELSGNGAREAIMYLRQRGWTDADEFSIQTAAGEIRPTITGPATCKVDMGR 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDL 180
             L  K  P      +                 +   VS+GNP     V+  + L   DL
Sbjct: 121 AKLTSKDFPSGPDDGRAQLTAGQHQ-------WSFQHVSIGNPQCSIRVDSLEALDALDL 173

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  +  H  F    N+S     + + +  R +ERGVG T + G+ A  + VA     
Sbjct: 174 PAIGGAIEHHERFPNRTNVSWYAELAPDRIRARIFERGVGETLSSGTGATGAAVAHVLRG 233

Query: 241 KTN-----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     V+V + GG L +E  ++ HV +TG A   + G L
Sbjct: 234 GGGDDPDTSTVTVVLDGGELEVEVAEDLHVNLTGWAVPVFGGTL 277


>gi|228975036|ref|ZP_04135595.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228784557|gb|EEM32577.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 268

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +        +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FVE D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DVEKAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + E ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263


>gi|85859968|ref|YP_462170.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
 gi|85723059|gb|ABC78002.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
          Length = 295

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 10/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + + K   +GN  LVI       ++ ++ +  +         D  +L+   +  S D  +
Sbjct: 17  IKYDKYHALGNDYLVIRPINDLGDLDAELVQLICNRHCGVGSDG-ILVGPLESESSDFRL 75

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI N DGSE +  GNG+R   RFL  +       FT ET+ G +V +   +G  ++V+MG
Sbjct: 76  RIFNPDGSEAEKSGNGLRIFSRFLYDQGLVHEDPFTVETLGGNVVCQVQNEGRTVTVEMG 135

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +       IP A    ++ R+   I              ++GNPH +   E         
Sbjct: 136 KVSFLSTKIPAAGEEREVLREHMDISG----ATFEYCAATVGNPHCVILCEKS-TPELAR 190

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            +G L+   P F    N+    +    ++ +  WERG G T A GS++ A+   +  L  
Sbjct: 191 CYGPLIETAPRFPYRTNVQFLEILDRNNIRIEIWERGAGYTLASGSSSTAAAAVAYKLGF 250

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            N  ++V M GG L I +  +    MTG   +  EG +D +
Sbjct: 251 CNEVITVHMPGGSLTIRFSHDFVATMTGPVTRICEGAMDPE 291


>gi|189502193|ref|YP_001957910.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497634|gb|ACE06181.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 258

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 102/286 (35%), Gaps = 40/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + F K  G GN  +++D     +       + I +L         D  + +      S D
Sbjct: 3   IPFYKYHGTGNDFILVDNITNPNVTCPHDPELIKSLCHRKFGIGADGFIFLEKS--GSYD 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +   N D S+   CGNG RC V       +      F  I G   A+   +       
Sbjct: 61  FEMIYYNSDASQS-LCGNGSRCAVHLASYLGIINNVADFLAIDGPHQARIQDN------- 112

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                                            + N + ++ G+PH +  V++ +    +
Sbjct: 113 -------------------LVYLQLHDVSTIQMMGNDYFLNTGSPHYVRLVQNLVETDVI 153

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG-VGLTAACGSAACASVVASGCL 239
               ++ A     + G N++  ++ +   + + T+ERG    T +CG+   A+ + +   
Sbjct: 154 ELGKSINASQSFQNTGTNVNFVQLEANNQISVCTYERGVNDETLSCGTGVVAAALVASQK 213

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVF----MTGEAKKEWEGKLDI 281
             T   V V   GG L I +  +N  F    + G A + ++GK+ I
Sbjct: 214 GYT-SPVYVVTKGGELQISFCKHNTAFSNICLVGPATQVFQGKITI 258


>gi|67459037|ref|YP_246661.1| diaminopimelate epimerase [Rickettsia felis URRWXCal2]
 gi|75536527|sp|Q4ULS7|DAPF_RICFE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|67004570|gb|AAY61496.1| Diaminopimelate epimerase [Rickettsia felis URRWXCal2]
          Length = 270

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  +V++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQFIIYEEHDDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV++G+ 
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVEDENNISVNVGKV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            + +     + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEVWMP-------SRDKIWELAERYMIDLKETICVDIGNPHLVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L   +
Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              +V    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTVVFKYGSLTMK-EENGNIIMQGAATLVARGE 265


>gi|163755441|ref|ZP_02162561.1| diaminopimelate epimerase [Kordia algicida OT-1]
 gi|161324861|gb|EDP96190.1| diaminopimelate epimerase [Kordia algicida OT-1]
          Length = 269

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 39/289 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTD-DNTHFDQIMLIHDFQDA 58
           ++  ++ F K +G GN  +++D R       +   I  L         D ++L+ +  D 
Sbjct: 8   IEEMILSFYKYQGTGNDFVLVDNRHDIFPKNNTKLIRKLCDRKFGIGADGLILLEN--DE 65

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           + D  +   N DG+E   CGNG RC+V F     + ++  TF  I G   A         
Sbjct: 66  TYDFKMIYYNADGNESTMCGNGGRCMVAFANFLGVIQQETTFIAIDGTHYA--------- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                            S +    +                 +  G+PH + F ++++  
Sbjct: 117 -----------------SIEADVVNLQMQDVTTIENHDEHVFLDTGSPHHVTF-KEEISQ 158

Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
           +D+   G  +    P F EG N++  +  S     +RT+ERGV   T +CG+   A  +A
Sbjct: 159 FDIKKEGAAIRYGAPYFEEGTNVNFVKKLSETEFRVRTYERGVEDETLSCGTGVTAVALA 218

Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
              L +T+   V++++ GG L + +        ++F+ G+A + ++G++
Sbjct: 219 MHHLQETSANTVTLQVEGGSLEVSFEKEATSYKNIFLKGKATQVFKGEI 267


>gi|311898742|dbj|BAJ31150.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 295

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 105/288 (36%), Gaps = 24/288 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------A 58
           F K  G  N  +++       ++++  + AL         D ++ +              
Sbjct: 15  FLKGHGTQNDFVIVPDPDGRIDLSAADVAALCDRRAGIGADGVLRVVRSAAEPAAAGMAG 74

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             + F+   N DGS  + CGNG+R   R+L       S          VA       + +
Sbjct: 75  QAEWFMDYRNADGSIAEMCGNGVRVFARYLVHAGHAGSGELA------VATRGGVKRVRI 128

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
               P      + +                V+         V+MGNPHA+ FVE DL H 
Sbjct: 129 AADAPDGTPGDVTVDMGRAAFPGPDGVTVTVDGR-SWPALNVNMGNPHAVAFVE-DLAHA 186

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                    A    + +GVN+          + +R  ERG G T +CG+ ACA  VA+  
Sbjct: 187 GHLYEAPATAPAGAYPQGVNVEFVVDRGERHVAMRVHERGSGETRSCGTGACAVAVAAIR 246

Query: 239 LHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + A        +V + GG L+IE   +  + MTG A    EG L
Sbjct: 247 RDGADPAATGEAVRYTVDVPGGRLVIEEFPDGRIEMTGPAVIVAEGVL 294


>gi|294055129|ref|YP_003548787.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221]
 gi|293614462|gb|ADE54617.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221]
          Length = 285

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 8/285 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K   +GN  LV+D +   +   T D I     +     D  +L         D  +
Sbjct: 1   MKFSKYHALGNDYLVLDPKDAPELPGTDDTIRICHRNFGLGSDG-ILYGPIPTERADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE-NRDGSISVDMG 121
           RIIN DGSE +  GNG+R   R+L        + FT +T+ GI+  +      SI VDMG
Sbjct: 60  RIINPDGSEAEKSGNGLRIFARYLFDEGKVGTEPFTVDTLGGIVTCEISEGAVSIKVDMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+                  +      ++  +GNPH +  +  ++      
Sbjct: 120 QVRFGHEHIPVDGPEQS--DQNLGHELEINGTNYTTYIADIGNPHCVVPL-PEISEELAC 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G ++  HP F    N+   +     ++ +  WERG G T A GS++ A+   +  +  
Sbjct: 177 KDGAVIEVHPDFPNRTNVQFLKALDRNNIQIEIWERGAGYTLASGSSSSAAAAVAHRIGL 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            +  ++V M GG + IE  D+  + MTG A +      D +   +
Sbjct: 237 CDETITVHMPGGKIGIEIGDDYAIRMTGPATRVAIMHFDPEALDF 281


>gi|163788613|ref|ZP_02183058.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1]
 gi|159875850|gb|EDP69909.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1]
          Length = 257

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 37/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    +   T               D  +L+ +  D +VD  
Sbjct: 1   MTFYKYQGTGNDFIIVDNRLQKIDKGDTKRIAELCDRRFGIGADGFILLEN--DENVDFK 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+  F     + +    F  I G+  AK             
Sbjct: 59  MVYYNADGNESSMCGNGGRCITAFAKLLGVIKNEAEFIAIDGLHKAKIK--------NDI 110

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L  + + + ++FD                      +  G+PH +  V         A+
Sbjct: 111 VHLQMQDVSIVKAFDSH------------------LFLDTGSPHHVELVTGLKDFEVKAN 152

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +    P    G N++     S  +  +RT+ERGV   T +CG+   A  +A     K
Sbjct: 153 GSKIRYGEPYNKAGSNVNFVEQVSDTTFSVRTYERGVEDETLSCGTGVTAVALAMHKSGK 212

Query: 242 TNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
           T    V++   GG L I ++ +      +++ G A K ++G+++
Sbjct: 213 TKSNIVNLNTPGGQLKITFNSDGDGYEDIWLIGPAIKAFKGEIE 256


>gi|116747508|ref|YP_844195.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB]
 gi|116696572|gb|ABK15760.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB]
          Length = 287

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 120/291 (41%), Gaps = 37/291 (12%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            F KM G GN  +V+D R    +     +          +   D ++LI +  D  VD  
Sbjct: 9   RFLKMTGSGNDFIVLDNRAQGISPEQGRELARLACRRKLSVGADGLILIEN--DPEVDFR 66

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121
            R  N DGSE + CGNG RC  RF   +    +   +F T+ GI+ A+      + + M 
Sbjct: 67  WRFFNADGSEAEMCGNGARCAARFAHIKGIVAKSRMSFRTLAGIIEAEIKEP-RVKIRMT 125

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYHYD 179
            P      + +                           ++ G PH + F+E+D  L   +
Sbjct: 126 PPHGLEPDLNVEAEQRSFRL----------------HFINTGVPHVVCFLENDRALEEMN 169

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +  +G LL  H  F   G N++ A V     + +RT+ERGV   T ACG+ + AS + + 
Sbjct: 170 VFHWGRLLRHHRRFQPAGSNVNFALVEDANHMAIRTYERGVEDETLACGTGSIASALVAA 229

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWH--------DNNHVFMTGEAKKEWEGKL 279
                   V V+   G  L I +         + + V++ G+AK  +E +L
Sbjct: 230 AKGMVQSPVEVRTRSGETLTIYFDNPSTGAAAEFSQVYLEGDAKVVYEAEL 280


>gi|330506677|ref|YP_004383105.1| diaminopimelate epimerase [Methanosaeta concilii GP-6]
 gi|328927485|gb|AEB67287.1| diaminopimelate epimerase [Methanosaeta concilii GP-6]
          Length = 299

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 25/282 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           FAK+ G GN  +++D         S       A          D ++ +   Q +  D  
Sbjct: 23  FAKLHGNGNDFILVDEISRELVAESAKSRFAIACCRRSFGIGADGVLFLASSQRS--DLG 80

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119
           +R+   DGSE + CGNG+RC+ ++              T   I  I V + +      VD
Sbjct: 81  MRLFQPDGSEAEMCGNGIRCLAKYAWESGYVGQSFDVETLAGIIPIQVRERDGSFWARVD 140

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P  +   IP   S D MD                   V+ G PHA+ FV  D    D
Sbjct: 141 MGVPRFNRPSIPACGSGDLMDEQMGEFRVC---------AVNTGVPHAVIFV--DDLDID 189

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGC 238
           +      +    +F EG N+   ++ S   L +RT+ERGV   T +CG+ A AS   +  
Sbjct: 190 IYEAAPPIRHCSVFPEGANVDFVKLGSS--LQIRTFERGVEGETFSCGTGAVASASVARR 247

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +      V V+  GG L+I + + +  FM G A   +  ++D
Sbjct: 248 MGLVGDEVLVETKGGPLIINF-EKDKAFMEGPAVTVYSAEMD 288


>gi|229199084|ref|ZP_04325767.1| Diaminopimelate epimerase [Bacillus cereus m1293]
 gi|228584355|gb|EEK42490.1| Diaminopimelate epimerase [Bacillus cereus m1293]
          Length = 268

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 16/270 (5%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           + + R   +++   A    + +     D ++LI     A V   +R+ N DGSE +SCGN
Sbjct: 1   MFEERIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGN 58

Query: 80  GMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLA 133
           G+RCV ++      ++   FT ET+ GI+ A+   +        +DMG P L    IP+ 
Sbjct: 59  GLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPML 118

Query: 134 RSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
              +    R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H M
Sbjct: 119 GEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEM 173

Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKM 250
           F E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V +
Sbjct: 174 FPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHL 233

Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            GG L+I W +  +V M G A+    G  +
Sbjct: 234 AGGDLMIAWTEEGNVLMKGPAEVICHGVYE 263


>gi|91205467|ref|YP_537822.1| diaminopimelate epimerase [Rickettsia bellii RML369-C]
 gi|157827174|ref|YP_001496238.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389]
 gi|122425677|sp|Q1RIT1|DAPF_RICBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225749|sp|A8GWH4|DAPF_RICB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|91069011|gb|ABE04733.1| Diaminopimelate epimerase [Rickettsia bellii RML369-C]
 gi|157802478|gb|ABV79201.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389]
          Length = 269

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 16/277 (5%)

Query: 3   SSMVDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           SS ++F KM G+GN  ++I+        +++  A +          DQ ++  +  D+  
Sbjct: 2   SSKINFVKMHGLGNDFVIINKKDLTGTYDLSQLAKSMAKRHLGIGCDQFIIYEEQNDS-- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              + I N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV++
Sbjct: 60  -YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVNV 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G    +   +P            +       + L+    V +GNPH + F + +L    +
Sbjct: 119 GGVSFNESWMP-------SRDKIWEFAERYMIDLKETICVDVGNPHLVIFSKLELQDQKI 171

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L 
Sbjct: 172 --VGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAAGLKLG 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             +    V    G L I   +N ++ M G A    +G
Sbjct: 229 FIHSPCEVVFKHGSL-IMKEENGNIIMQGPASLVAKG 264


>gi|254386096|ref|ZP_05001410.1| diaminopimelate epimerase [Streptomyces sp. Mg1]
 gi|194344955|gb|EDX25921.1| diaminopimelate epimerase [Streptomyces sp. Mg1]
          Length = 291

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 110/309 (35%), Gaps = 38/309 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M  + + F K  G  N  +++        + + A+  L         D ++ +       
Sbjct: 1   MTQTSLSFLKGHGTENDFVIVPDPDNAIELPATAVAKLCDRRAGIGGDGVLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L      +       T  G+    
Sbjct: 61  EAKAMAGEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQYAGHVEPGDLAIATRGGVKRVH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++ G ++V MG        + ++                          V+MGNPHA+ 
Sbjct: 121 LDKRGDVTVSMGRAEFPEGEVTVSVGDR----------------SWPARNVNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+  L            +    +  GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVD-SLDDAGTLYDAPPFSPASAYPAGVNVEFVADRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      +          +V + GG L+I  + +  + MTG A     G+ D  
Sbjct: 224 CAVAVAAIRRDGVDPAETGEQVTYTVDLPGGTLVITEYPDGRIDMTGPAVIVGSGEFD-- 281

Query: 283 TGKWIKKNE 291
              W+ +  
Sbjct: 282 -AAWLAETA 289


>gi|229032582|ref|ZP_04188547.1| Diaminopimelate epimerase [Bacillus cereus AH1271]
 gi|228728767|gb|EEL79778.1| Diaminopimelate epimerase [Bacillus cereus AH1271]
          Length = 268

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +        +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263


>gi|124485385|ref|YP_001030001.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z]
 gi|124362926|gb|ABN06734.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z]
          Length = 274

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 117/283 (41%), Gaps = 32/283 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  ++ID               A+           D ++ I   +    D
Sbjct: 13  IAFTKLHGNGNDFILIDEMDQVIIPDDMKAQFAVVYCDRRFGIGGDGVLFI--SKSDKAD 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119
             +R+   D SE + CGNG+RC+ ++   +   K+K+F+ ET+ G++  +   D      
Sbjct: 71  IRMRLFQPDASEAEMCGNGIRCLSKYAFDKEYAKKKAFSVETLAGVMQVRVGYDSDGDFM 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                              +D           +     + V+ G PHA+ FV  ++    
Sbjct: 131 AT-----------------IDMGTAVYDESREIDGMTVYSVNTGVPHAVIFVG-NVDGIA 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGC 238
           +      +  HP F +G N++  ++T    + +RT+ERGV   T +CG+ + AS + +  
Sbjct: 173 INEVAPKIRHHPSFPKGTNVNFVQITGSSEIVIRTFERGVEGETLSCGTGSTASALIAAK 232

Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHV-FMTGEAKKEWEGKL 279
             KT    V VK +GG L I       +  MTG A   + G++
Sbjct: 233 TGKTHGSVVHVKTVGGPLDITV---GDIPQMTGPAATVFVGEI 272


>gi|189485645|ref|YP_001956586.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287604|dbj|BAG14125.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 274

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 30/289 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F+K+   GN  ++ID R      ++  + A        +   D ++L+     A  D 
Sbjct: 3   INFSKLTAAGNDFILIDNRENIIAQEDCQALAKKLCDRKYSIGADGLILLEKS--ACKDF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMG 121
            ++  N DGS    CGNG R + +F            FET  G++ A+   +  + +D+ 
Sbjct: 61  KMKYFNSDGSYASMCGNGGRSIAKFAYDLCVANLKMVFETDAGVINAEILPEDRVRLDLY 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    K I +  +  + D +                 ++ G PH + FV+ D+ + D+ 
Sbjct: 121 NPRDLKKDIKVEVNGKEFDVN----------------FINTGVPHVVIFVD-DIENIDVF 163

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G  + +H  F   G N++  +V    +L +RT+ERGV   T ACG+   AS + S   
Sbjct: 164 GYGRAIRRHKTFAPAGTNVNFVKVIKDNTLLVRTYERGVEDETLACGTGITASGIISVLK 223

Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283
                 V V   GG  L +   + N    +V + G A   ++G + I++
Sbjct: 224 GFAASPVKVIARGGDKLSVSLRNPNDKISNVVLEGPALITFKGTVKIQS 272


>gi|228948660|ref|ZP_04110938.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228810967|gb|EEM57310.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 268

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +        +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263


>gi|325954346|ref|YP_004238006.1| diaminopimelate epimerase [Weeksella virosa DSM 16922]
 gi|323436964|gb|ADX67428.1| Diaminopimelate epimerase [Weeksella virosa DSM 16922]
          Length = 260

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 36/283 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F K +G GN  +++D R     +    I  +         D ++L+ +      D  +R 
Sbjct: 5   FYKYQGAGNDFVLLDDREETFLVDRQKIERICHRNFGVGADGLILLQNS--NPYDFRMRY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DG E   CGNG RC+ +F       ++  TFE I G+  A  +              
Sbjct: 63  FNSDGRESSMCGNGGRCIAQFAFDLGLVQQEMTFEAIDGLHRAVVH-------------- 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                P   + + +D D+  + P +       + ++ G+PH + FV D            
Sbjct: 109 -----PTYVALEMIDVDKVEVYPSH-------YFLNTGSPHHVQFVADVQKIDVQKEGAK 156

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
           +    P F +G N++   V   ++L +RT+ERGV   T ACG+   A+ +A+    K ++
Sbjct: 157 IRYGAPYFEQGSNVNFVEVDENQTLHIRTYERGVEAETLACGTGVTAAAIAAYSAGKVSQ 216

Query: 245 -AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282
             + VK +GG L +++         V++ G A+  +EG + ++
Sbjct: 217 LPIHVKAVGGDLSVQFMLANLRYEQVWLEGPAQFVFEGMITLE 259


>gi|302063355|ref|ZP_07254896.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
          Length = 241

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 85/245 (34%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 40  TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSF 97
                 FDQ++L+    +  VD   RI N DGSEV+ CGNG RC  RF+  +    +K  
Sbjct: 3   RHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQI 62

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
             ET  GI+  +   DG ISVDMG P L  + IP   +                      
Sbjct: 63  RVETKGGIIELEIRSDGQISVDMGPPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVEL 117

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217
             VSMGNPHA+  V+ D+ +  + + G  +  +P F   VN+    V   +   LR WER
Sbjct: 118 AAVSMGNPHAVLRVD-DINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWER 176

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWE 276
           G G T ACG+ ACA+ VA+      +  + + + GG L IEW    H V MTG A + +E
Sbjct: 177 GAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYE 236

Query: 277 GKLDI 281
           G++ +
Sbjct: 237 GQVRL 241


>gi|262038392|ref|ZP_06011769.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264]
 gi|261747610|gb|EEY35072.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264]
          Length = 281

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 10/280 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  ++++ +   +    D    A            D ++++    +   
Sbjct: 1   MLKFEKYQGAGNDFIIVNEKDLIEKGIPDYNQFASEVCCRHFGIGADGLLILKYVANMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             F+   N DGS+   CGNG+RC   +L +    +  TF         K           
Sbjct: 60  --FMFYYNSDGSQAPMCGNGIRCFSFYLKNNNVEQEDTFTVKTLSGDLKIETKTENETFF 117

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +  +   +  + +  +           +          + MG  H++ FV +D   Y++
Sbjct: 118 AKVNMGEPVFDVKKLINIEKERFMREKIIIDEKEIEISYIFMGTDHSVIFV-NDFSDYNI 176

Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
              G+ +  +  +F + VN++  +V    ++++ TWERG G T ACG+ A AS V +   
Sbjct: 177 DDLGSKIENYTEIFPKKVNVNFVKVHDRSNIEVITWERGAGRTLACGTGATASAVLARIY 236

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
                 ++V + GG L+I++       +MTG ++K  EG+
Sbjct: 237 GYVEDRINVTVPGGKLVIDYAGYGSEAYMTGTSEKIAEGQ 276


>gi|282163528|ref|YP_003355913.1| diaminopimelate epimerase [Methanocella paludicola SANAE]
 gi|282155842|dbj|BAI60930.1| diaminopimelate epimerase [Methanocella paludicola SANAE]
          Length = 279

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 24/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K++G GN  ++ID         D   + A            D ++ +     A   
Sbjct: 3   IQFTKLQGNGNDFILIDEWDDLLVPDDRKAAFAKKYCHRRFGIGADGVLFLTKGVKAP-- 60

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK---ENRDGSI 116
             +RI N DGSE + CGNG+RC  ++      +       ET  G+L  +   EN    I
Sbjct: 61  LQMRIFNEDGSEAEMCGNGIRCFAKYALDKRYIVPGLARVETKAGVLEIETKTENGKTYI 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V+MG+P+ D   IP     + ++           L       V+ G PHA+ FV+  L 
Sbjct: 121 KVNMGKPLFDRVKIPAQGHGEFINVP---------LHGYEVSAVNTGVPHAVVFVD-SLE 170

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
             DL     L+    +F++G N++  +   + +L +RT+ERGV   T +CG+ + A+   
Sbjct: 171 DPDLMDAAPLIRFDKVFAKGANVNFVQR-DMGNLRVRTYERGVEGETLSCGTGSVAAAAI 229

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +  L     +  VK  GG L I + +++  +M G A+  ++G+++
Sbjct: 230 ARHLGIVRDSAVVKTAGGELRITF-EHDMAYMEGGAETVYKGEIE 273


>gi|225016905|ref|ZP_03706097.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum
           DSM 5476]
 gi|224950299|gb|EEG31508.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum
           DSM 5476]
          Length = 287

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 18/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM+G GN  +  +            ++           D I+LI     A  DA +
Sbjct: 10  MEFTKMQGCGNDYIYFNCMEQELSEPGPLSVRLSDRHFGIGGDGIVLICRSDIA--DAKM 67

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRD----GSIS 117
           R+ N DGSE + CGN +RCV ++L+       +     ET+ G+     ++      S++
Sbjct: 68  RMFNADGSEGKMCGNAIRCVGKYLSDNGLVGDKNELDIETLSGVKHLVLHKQRSGVRSVT 127

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG   +    +P+     ++      IG  ++    N   VSMGNPH +   + D+  
Sbjct: 128 VDMGPAQMHPSSLPVLIEGTQVVNSPVKIGGTSY----NITCVSMGNPHCVVLCD-DVEG 182

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            ++   G       +F E VN    ++T   +L +R WERG G T ACG+ ACA+ VA+ 
Sbjct: 183 LEIEKIGPQFENSELFPERVNTEFIKLTGKNTLRMRVWERGSGETWACGTGACAAAVAAV 242

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                     + V++ GG LLI++  +  V MTG A K ++G + +
Sbjct: 243 ENGLCAKGEDIIVRLNGGNLLIKYT-DKTVTMTGTADKVFDGTIKL 287


>gi|253580006|ref|ZP_04857273.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848525|gb|EES76488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 284

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 113/276 (40%), Gaps = 12/276 (4%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRII 67
           +K +G+GN  L++D +     +    I  L         D ++      +      +RI 
Sbjct: 10  SKYQGLGNDYLILDPKKNQVQLQGKKIALLCQRGFGLGADGVLY--GPVEIDGKLGVRIF 67

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123
           N DGSE    GNG+R   ++L          F+                     V++G+P
Sbjct: 68  NADGSESAISGNGVRIFAKYLMDNGYITEKKFDIETMSGTIHVECLNSRATEFKVNIGKP 127

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                 IP++    ++ ++ F      +        +++GNPH I F + ++    + + 
Sbjct: 128 SFISSDIPVSGEVREVIKENFVFHGKEYK----ATCLTVGNPHCIIFTD-NVSAEAVKNL 182

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +     F E +NL I R     +L++  WERG G T A G+ +CA+  A+  L    
Sbjct: 183 GPYVENADEFPERMNLQICRQVDKGNLEIEIWERGSGYTKASGTGSCAAAAAAYKLGLVE 242

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             ++V   GG + I+  ++  ++MTG      +  +
Sbjct: 243 SRINVNQPGGMIQIDMEEDETIYMTGTVGYIADISV 278


>gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
 gi|29839348|sp|Q8KAX9|DAPF_CHLTE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21648051|gb|AAM73238.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
          Length = 257

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 30/279 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +VID R    N+T + + A+         D ++L+   + A  D  +   N 
Sbjct: 1   MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLETSETA--DFRMNYHNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGEPILD 126
           DG     CGNG RC V F      R   K + FE       A+   + S+ + M  P   
Sbjct: 59  DGFPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPS-- 116

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
                                        N   V  G+PHAI +V +      L   GN+
Sbjct: 117 ------------------DFRDGLQAGAWNCHFVDTGSPHAIAYVNNLDQLDVLTEGGNI 158

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
                +F +G N++   +T+ ++L +RT+ERGV   T ACG+   A+ + S  L K   +
Sbjct: 159 RHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTSS 218

Query: 246 -VSVKMLGGG-LLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
            V VK+  G  L++ +++  + +++ G A+  + G + +
Sbjct: 219 LVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTITL 257


>gi|167043791|gb|ABZ08482.1| putative diaminopimelate epimerase [uncultured marine microorganism
           HF4000_APKG3D20]
          Length = 280

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 8/281 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           ++F K   +GN  LV+D R   +++   +I  +         D  +L   F     D  +
Sbjct: 1   MNFDKYHALGNDYLVLDPRERFESLDERSIIRICDRNFGLGSDG-ILHGPFSSEKADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI+N DGSE +  GNG+R   R+     ++  + FT ET+ GI+  + + D ++ V    
Sbjct: 60  RILNPDGSEAEKSGNGLRIFARYLRDQGKVGTEPFTVETLGGIVTCEVSGDANVIVVEMG 119

Query: 123 PILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            +      IP+    +   R+  +            +  ++GNPH +  ++ ++    + 
Sbjct: 120 QVSFRSDVIPVKVEGEA--REVLNEPIEAAGNSLKYYAATIGNPHCVIPMD-EVSESFVR 176

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L  HPMF    N+ + ++    +L +  WERG G T A GS++ A+   +  +  
Sbjct: 177 EVGPDLENHPMFPNRSNVQLLQILDRNNLKIEIWERGAGYTLASGSSSSAAGAVARKMGA 236

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  ++V M GG + +   D  +V M G A +     LD +
Sbjct: 237 CDEEITVHMPGGQIALRIDDTFNVTMKGSATRVGSMTLDPE 277


>gi|239982713|ref|ZP_04705237.1| diaminopimelate epimerase [Streptomyces albus J1074]
 gi|291454561|ref|ZP_06593951.1| diaminopimelate epimerase [Streptomyces albus J1074]
 gi|291357510|gb|EFE84412.1| diaminopimelate epimerase [Streptomyces albus J1074]
          Length = 296

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 112/303 (36%), Gaps = 27/303 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       +++   + AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPDNALDLSPRTVAALCDRRAGIGADGVLHVVRSAAHP 59

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DGS  + CGNG+R   R+L                  +A   
Sbjct: 60  EARHLADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHAGEGDL------PIATRG 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                 +   EP  +    P+  +  +       +             V+MGNPHA+ FV
Sbjct: 114 GVKHAHLAKDEPGAEPGTGPVTVAMGRAALPGGDVTVATAHGTAPALHVNMGNPHAVAFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL           +     + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 174 -ADLADAGELLSAPAVTPAGAYPDGVNVEYVVDRGPGHVAMRVHERGSGETRSCGTGACA 232

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + AV       +V + GG L+I  + +  V MTG A    EG++D    
Sbjct: 233 VAVAAARRDGADPAVTGSPVTYTVDLPGGRLVITEYPDGSVDMTGPAVIVAEGEID---A 289

Query: 285 KWI 287
           +W+
Sbjct: 290 EWL 292


>gi|86142838|ref|ZP_01061277.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217]
 gi|85830870|gb|EAQ49328.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217]
          Length = 258

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 40/284 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      N T               D ++L+ + +D   D  
Sbjct: 3   IPFYKYQGTGNDFVMIDNRQHIFSKNDTKLVKQLCDRKFGIGADGLILLENHED--QDFT 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+    CGNG RC+V F     + + S TFE I G+  A              
Sbjct: 61  MVYYNADGNPSSMCGNGGRCIVAFAQELGVIKNSTTFEAIDGLHEAYIKDGLVHLKM--- 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                            +   +  G+PH + +V +D+ HYD+ S
Sbjct: 118 -----------------------QDVSEIKEYEDHLFLDTGSPHHVQWV-NDIEHYDVKS 153

Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  L   P     G N++    T+     LRT+ERGV   T +CG+ A A  +A     
Sbjct: 154 NGAALRYGPLYGKAGSNINFVEATTEG-FRLRTYERGVEDETLSCGTGATAVALAIHKQG 212

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           K +  ++ +++ GG L IE+        ++F+ G A+K +EG  
Sbjct: 213 KVSHTSIPLQVEGGNLKIEFEPEGVGYKNIFLIGPAQKVFEGVW 256


>gi|15892502|ref|NP_360216.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7]
 gi|238650896|ref|YP_002916752.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic]
 gi|21362478|sp|Q92I41|DAPF_RICCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259595062|sp|C4K2A3|DAPF_RICPU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15619660|gb|AAL03117.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7]
 gi|238624994|gb|ACR47700.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic]
          Length = 270

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEAWMP-------SRDKVWEFAERYMIDLKETICVDIGNPHVVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A       +
Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              ++    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265


>gi|302343307|ref|YP_003807836.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075]
 gi|301639920|gb|ADK85242.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075]
          Length = 301

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 115/296 (38%), Gaps = 31/296 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQD----- 57
           V+F KM G GN  ++ID R          + A        +   D ++++   Q      
Sbjct: 20  VEFCKMTGTGNDFILIDNRRARLAPALMPALAKALCCRRRSVGADGLIVLSPSQRVDAAL 79

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             +D      N DGS  + CGNG RC  RF  S           + G  +  +   G I 
Sbjct: 80  GKIDFRWDFFNADGSSAEMCGNGGRCAARFAVSIG---------LAGPELIFDTLAGPIR 130

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             +G   +  +L P    +D +  +                 V+ G PHA+  V+ DL  
Sbjct: 131 AWVGRQTVTLELTPPTGWYDDLRLEI-------GGRTMTIHGVNTGVPHAVVPVD-DLSS 182

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            D+ ++G  +  H  F+               L++RT+ERGV   T ACG+ A AS + +
Sbjct: 183 ADVKNWGREIRFHRHFAPAGTNVNFIAARHGRLEVRTYERGVEDETLACGTGAVASALMA 242

Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWI 287
           G L      ++V +  G  L I +  +      V + G A   ++G L      W+
Sbjct: 243 GRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQVRLEGAADHVYDGVLGAGAFAWL 298


>gi|254391799|ref|ZP_05006994.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
 gi|197705481|gb|EDY51293.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 304

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 109/291 (37%), Gaps = 20/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + F K  G  N  ++I       ++ +  +  L         D ++ +            
Sbjct: 1   MPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 60

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG+R   R+L       +          V + + D ++
Sbjct: 61  ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 120

Query: 117 S-VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
              D          I ++     +  +   +G            VSMGNPHA+ FV+ DL
Sbjct: 121 PGADGTTARSAPGAITVSMGRAVLPAETVTVGV--GARQWPTTHVSMGNPHAVAFVD-DL 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H              ++ +GVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 178 DHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGETRSCGTGACAVAVA 237

Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +      + AV       +V + GG L+I    +  V MTG A    EG +
Sbjct: 238 AARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEGTI 288


>gi|326776157|ref|ZP_08235422.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1]
 gi|326656490|gb|EGE41336.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1]
          Length = 300

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 38/307 (12%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--- 57
            +S + F K  G  N  +++        + +  +  L         D ++ +        
Sbjct: 14  STSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHPE 73

Query: 58  -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKE 110
                 + + F+   N DGS  + CGNG+R    +L      +    T  T  G      
Sbjct: 74  ARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVHL 133

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            ++G I+V MG  +L  + + ++                          V+MGNPHA+ F
Sbjct: 134 AKNGDITVSMGRALLPGESVTVSVGDR----------------SWPARNVNMGNPHAVAF 177

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V+ DL H         ++   ++ +GVN+          + +R  ERG G T +CG+ AC
Sbjct: 178 VD-DLDHAGDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGAC 236

Query: 231 ASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           A  VA+      + A +       V + GG L+I  H +  + MTG A    EG +D   
Sbjct: 237 AVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID--- 293

Query: 284 GKWIKKN 290
             W++ +
Sbjct: 294 RAWLETS 300


>gi|229586693|ref|YP_002845194.1| diaminopimelate epimerase [Rickettsia africae ESF-5]
 gi|259595061|sp|C3PNE1|DAPF_RICAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|228021743|gb|ACP53451.1| Diaminopimelate epimerase [Rickettsia africae ESF-5]
          Length = 270

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEAWMP-------NRDKVWEFAERYMIDLKETICVDIGNPHVVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A       +
Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              ++    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265


>gi|116753767|ref|YP_842885.1| diaminopimelate epimerase [Methanosaeta thermophila PT]
 gi|121694439|sp|A0B6C1|DAPF_METTP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116665218|gb|ABK14245.1| diaminopimelate epimerase [Methanosaeta thermophila PT]
          Length = 279

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 25/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F K+ G GN  ++ID     R   D  +  +      +     D ++ +   + A  D
Sbjct: 4   LEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLFLVPSERA--D 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117
             +R+   DGSE + CGNG+RC+ +               T   +  I V ++ +     
Sbjct: 62  IGMRLFQPDGSEAEMCGNGIRCLAKHAWESGYVGERFSVETLAGVIPIQVRRDRKGFWAR 121

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V+MG P  +   IP       +            L       V+ G PHA+ FVE+    
Sbjct: 122 VEMGIPRFERSEIPADGEGTFLKVP---------LHGFEVSAVNTGVPHAVIFVEN--LD 170

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236
             +      +     F EG N++  R+     L++RT+ERGV   T +CG+ + A+   +
Sbjct: 171 IPVEQIAPKIRHSSCFPEGANVNFVRL--GNHLEVRTFERGVEAETLSCGTGSVAAAAVA 228

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L      V V   GG L I +      FM G A     G +
Sbjct: 229 RRLGLVGETVEVMTKGGPLRISFA-GEKAFMEGPAVTVCRGVV 270


>gi|34580505|ref|ZP_00141985.1| diaminopimelate epimerase [Rickettsia sibirica 246]
 gi|28261890|gb|EAA25394.1| diaminopimelate epimerase [Rickettsia sibirica 246]
          Length = 270

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +    +++  T       L+   N + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTRKQDITVMVGNKKLLCNVNDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEAWMP-------SRDKVWEFAERYMIDLKEIICVDIGNPHVVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A       +
Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              ++    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265


>gi|262277883|ref|ZP_06055676.1| diaminopimelate epimerase [alpha proteobacterium HIMB114]
 gi|262224986|gb|EEY75445.1| diaminopimelate epimerase [alpha proteobacterium HIMB114]
          Length = 270

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 16/281 (5%)

Query: 6   VDF--AKMEGIGNKILVIDMRGCHDNITSD--AINALSTD-DNTHFDQIMLIHDFQDASV 60
           + F   KM+G+GN  L+ID R    +++     I  LS       FDQ++ + +   A  
Sbjct: 1   MKFKAFKMDGLGNDFLIIDNRNQKISLS--PEQILKLSNRERGIGFDQLIYMENSTQA-- 56

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA I+  N DG    +CGNG RC+   L     + + TF+    + +  +N D  I+V M
Sbjct: 57  DAEIKYFNSDGRMADACGNGNRCISDILIKEKNKDNVTFKVNSFVHIGSKNTDNLINVIM 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +P +    IP+       D          +       ++++GNPH +FF +  +   +L
Sbjct: 117 PKPKIKLSEIPVTN-----DVQNNPFLIEINSKKLKGHLINVGNPHIVFFEK--ISDEEL 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G ++     F + +N++ A + + +++D+  WERG G T ACG+AACA+   +  L 
Sbjct: 170 KKIGPIIENLKYFPDRINVTFADIQNEDNIDINVWERGAGKTLACGTAACATAYIASDLK 229

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            T   V++    G LLI+ + +  + MTG   ++ E ++++
Sbjct: 230 LTKNPVNIHFQKGHLLIKINSDKTMMMTGPVSEKKEIEVNL 270


>gi|229141655|ref|ZP_04270185.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26]
 gi|229187176|ref|ZP_04314321.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1]
 gi|228596186|gb|EEK53861.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1]
 gi|228641723|gb|EEK98024.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26]
          Length = 268

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +        +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWTEEGNVLMKGPAEVICHGVYE 263


>gi|239947305|ref|ZP_04699058.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921581|gb|EER21605.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 270

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLSSSHDLSQLAKNMADRHTGIGCDQFIIYEEHDDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     +K  T       L+   N + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKNLLCNVNDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEAWMP-------SRDRIWEFAERYMIDLKETICVDIGNPHLVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WE+GVGLT ACGS AC S  A   L   +
Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWEQGVGLTLACGSGACGSFAAGLKLGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              +V    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTVVFKHGNLTMK-EENGNIIMQGAATLVARGE 265


>gi|305667268|ref|YP_003863555.1| diaminopimelate epimerase [Maribacter sp. HTCC2170]
 gi|88709315|gb|EAR01548.1| diaminopimelate epimerase [Maribacter sp. HTCC2170]
          Length = 258

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 108/281 (38%), Gaps = 38/281 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++ID R         +              D ++L+ +  D +VD  + 
Sbjct: 5   FYKYQGTGNDFVMIDNRSKLFPKENINLIARLCDRRFGIGADGLILLEN--DETVDFKMV 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124
             N DG++   CGNG RC+V F          T F  I G+  A                
Sbjct: 63  YFNSDGNQSSMCGNGGRCLVAFANYLGMISKETVFRAIDGLHEATITNG----------- 111

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                            +         +   + F +  G+PH +  V+ DL  + +   G
Sbjct: 112 ---------------VVNLKMNNVDEIVVKPSSFFLDTGSPHHVQLVK-DLGSFQVFEEG 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +       EG N++    T   +  +RT+ERGV   T +CG+   A  +A     K +
Sbjct: 156 KKIRYGVYGQEGSNINFVESTGKATFAVRTYERGVEDETLSCGTGVTAVAIAMHKAKKVD 215

Query: 244 RAV-SVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGKL 279
             V  +   GG L +    E++  ++V + G AK+ ++G++
Sbjct: 216 SNVIDITTKGGALQVMFLEEFNKYSNVRLIGPAKQVFKGEM 256


>gi|260063133|ref|YP_003196213.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501]
 gi|88784702|gb|EAR15872.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501]
          Length = 257

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/281 (22%), Positives = 106/281 (37%), Gaps = 38/281 (13%)

Query: 8   FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +  GN  ++ID R  G   N +S   N          D ++L+ +  D   D  + 
Sbjct: 5   FYKYQATGNDFILIDNRLGGFPGNDSSHIANLCHRRFGIGADGLILLEN--DPGADFRMV 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DG     CGNG RC+  F         +  F    G+  A+ + +           
Sbjct: 63  YFNSDGRPGSMCGNGGRCITAFAKFLGIVGDTCRFVASDGLHEARISGE----------- 111

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                   + S    D              +N   ++ G+PH +  V   L  YD+   G
Sbjct: 112 --------SVSLRMADVGEIRHK-------KNYSFLNTGSPHHVQEVSG-LEAYDVDREG 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT- 242
             L        G N++   +     L +RT+ERGV   T +CG+   A+ +A     K  
Sbjct: 156 KRLRYSLYGEPGSNINFVELQPDGVLHVRTYERGVEAETYSCGTGVTAAAIAMEAQGKHP 215

Query: 243 NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
            +   ++  GG L + +  +      +++TG A+  ++G L
Sbjct: 216 EQPTRIRTRGGDLEVAFRKDAGAYTDIWLTGPARMVFKGTL 256


>gi|257463649|ref|ZP_05628040.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 267

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 17/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME  GN  ++ D R      I   A            D I+       A  D  +
Sbjct: 1   MKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA--DMKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG+RC+ R++     + + + T ET  G+       D         
Sbjct: 59  NYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDE-------- 110

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  + +     + +++               + V++G PH    VED +   +L  
Sbjct: 111 -KNQVSSVQVKMGKAEWEKEFQEERVEIEGREFVFYRVTVGVPHIAILVEDFMKDEELNY 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G+ L KHP+F +  N++  ++ + + + ++TWERG G T  C +   +  V    L K 
Sbjct: 170 WGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVILQHLQKI 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMT-GEAKKEWEGKLDI 281
           +        GG + +E  D+  V M  G+A   + G +D+
Sbjct: 230 SGEAHFYTEGGDVFVEVKDD--VVMIYGKANFVFAGDIDV 267


>gi|262341161|ref|YP_003284016.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272498|gb|ACY40406.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 268

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 26/283 (9%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F K +G GN  +++D R          +  L         D I+LI +  D+  D +++
Sbjct: 4   NFFKYQGTGNDFILLDDRTKKIVKEYTILKKLCNRHFGIGADGIILIQN--DSKSDFYMQ 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DG E   CGNG RC + F       K               +  G I  +      
Sbjct: 62  YYNSDGKESTMCGNGGRCAIFFAKKLGINKENKIHFRA----IDGHHYGLIIKNEKNDKC 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
              +            +  +I             ++ G+PH I FVE+            
Sbjct: 118 LVSI------------NLINIQKNEIEIHPEHVFLNTGSPHHIIFVENIKEINVYEEGKK 165

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           +  ++P   +GVN++   +   ++L +RT+ERGV   T +CG+   ASV+A+   ++ + 
Sbjct: 166 IRFRNPYLKKGVNVNFVEILENKTLQVRTYERGVENETLSCGTGVTASVIAAYETNRISS 225

Query: 245 --AVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281
              + V  +GG L +   +  +    +++TG  +  ++G + I
Sbjct: 226 IEKILVHTIGGKLWVSLKETKNEYKDIYLTGSVQFIFQGCIFI 268


>gi|124008484|ref|ZP_01693177.1| diaminopimelate epimerase [Microscilla marina ATCC 23134]
 gi|123985992|gb|EAY25842.1| diaminopimelate epimerase [Microscilla marina ATCC 23134]
          Length = 258

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 38/285 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           V F K +G GN  ++ID R     I                  D ++L+ + +    D  
Sbjct: 3   VSFYKYQGTGNDFVMIDDRAAQFPIDNYELIARLCDRRFGIGADGLILLRNAE--GYDFR 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N +G E   CGNG RC V+F       +  T        +A +             
Sbjct: 61  MVYFNANGKEGSMCGNGGRCTVKFAQFLGIFEHET------HFIAVDG------------ 102

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                  P     +                  + + +  G+PH + FV ++L  +D+ + 
Sbjct: 103 -------PHDAKVEDGLVHLKMGDVQTVENNLDHYFLDTGSPHYVQFV-NNLPQFDVFAE 154

Query: 184 GNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
           G  +  +  F E G N++       + + +RT+ERGV   T +CG+   A+ + SG L +
Sbjct: 155 GKSIRYNERFKEVGTNVNFVEKIGEQHIFVRTYERGVEDETYSCGTGVTAAALTSG-LQQ 213

Query: 242 TNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281
            N  +++K LGG L I +      +  ++++ G A+  +EG + +
Sbjct: 214 MNSPINIKTLGGDLQISFTKKLDQEFTNIYLIGPAEAVFEGVVSV 258


>gi|52081707|ref|YP_080498.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|52787092|ref|YP_092921.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|319647623|ref|ZP_08001841.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2]
 gi|81608949|sp|Q65FD6|DAPF_BACLD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|52004918|gb|AAU24860.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580]
 gi|52349594|gb|AAU42228.1| DapF [Bacillus licheniformis ATCC 14580]
 gi|317389964|gb|EFV70773.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2]
          Length = 285

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 17/287 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
            F KM G+GN  + ++    H     ++  A+   S       D ++LI     A V   
Sbjct: 5   RFTKMHGLGNSYIYVNQFEEHLPEELLSDLAVKVSSVYTGIGSDGMILICPSDRAPV--K 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117
           +RI N DGSE ++CGNG+RCV ++       +  +F  ET+ G++ A+   D     S +
Sbjct: 63  MRIFNSDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAQVEVDEGKVVSAT 122

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMGEP L    +P+         +  +   +          VSMGNPH +F+++ D+  
Sbjct: 123 VDMGEPRLLKSDMPMRGE---QGSETINEKMIFGGREMKGTAVSMGNPHIVFYLD-DIEK 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L + G L+ K   F EGVN+    V +   L  R WERG G+T ACG+ ACA+ V+S 
Sbjct: 179 APLTTMGPLIEKDERFPEGVNVEFVEVENENELHFRVWERGSGITQACGTGACAAAVSSV 238

Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                K +  ++V + GG L+I W ++  V MTG A+   EG+  I 
Sbjct: 239 LNGYSKRDTDITVHLAGGDLIINWKNDGRVMMTGPAETVCEGEFFIS 285


>gi|157828451|ref|YP_001494693.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933166|ref|YP_001649955.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa]
 gi|166225751|sp|A8GS10|DAPF_RICRS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|189082838|sp|B0BXH3|DAPF_RICRO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157800932|gb|ABV76185.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908253|gb|ABY72549.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa]
          Length = 270

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ +L  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFILYEEHNDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     ++  T       L+   N + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEAWMP-------SRDKVWEFAERYMIDLKETICVDIGNPHVVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERGVGLT ACGS AC S  A       +
Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGLTLACGSGACGSFAAGLKHGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              ++    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265


>gi|195953539|ref|YP_002121829.1| diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1]
 gi|229807503|sp|B4U9P0|DAPF_HYDS0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|195933151|gb|ACG57851.1| Diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1]
          Length = 277

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 114/285 (40%), Gaps = 30/285 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDNI--------TSDAINALST-DDNTHFDQIMLIHDFQDAS 59
            K +G GN  ++ID R               ++ +  L     +   D ++LI   ++  
Sbjct: 4   TKYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTK 63

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118
                   N DGS  + CGNG RC  RF   + +  K   FETI G + A       + V
Sbjct: 64  NHFSWAFFNADGSAAEMCGNGSRCAARFAYEKDIAPKDIVFETIAGEIEAHIMDSKRVKV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-LYH 177
            +       K I +   +                       V+ G PH + FV++D L +
Sbjct: 124 QLTPYHSHQKNIEIKTEY----------------GTFKGHFVNTGVPHFVIFVDEDELDN 167

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235
            D+   G  +  H  F  +G N++    T   S  +RT+ERGV   T ACG+ + A  + 
Sbjct: 168 LDVEKVGRAIRYHEYFAPKGTNVNFVAKTKNGSFRIRTYERGVEGETLACGTGSAACGIN 227

Query: 236 SGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  L  +    V +    G LL    +N+ VF+ G   K +EG L
Sbjct: 228 AYLLGLSASNIVDIITKSGELLKITIENDKVFLEGPTTKVFEGML 272


>gi|32491019|ref|NP_871273.1| hypothetical protein WGLp270 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340036|sp|Q8D2T4|DAPF_WIGBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|25166225|dbj|BAC24416.1| dapF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 276

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/281 (26%), Positives = 126/281 (44%), Gaps = 12/281 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM  +GN  ++++     +NI+   I  LS       FDQ++LI  F        I
Sbjct: 1   MKFSKMHSLGNDFVIVNNIDKKNNISPIFIKKLSDRYTGIGFDQLILIEFFCKKYFYFKI 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGE 122
           +I N D SE   C NG+RCV  FL  +   K          G+      ++  I V +  
Sbjct: 61  KIFNSDSSESFQCINGIRCVFMFLKIKKLIKKNIAFIGNNLGLSKTLMTKNKLICVKIKP 120

Query: 123 PILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P     K I +   ++  ++    I           + V +GNPH I   + ++ + + +
Sbjct: 121 PRFYIEKDILVNPKYNNKEKIILRI----FKKKITCYFVFVGNPHCIIISK-NIEYNNFS 175

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
                L K+ +F   +N+SI  +   + + L+ +ERG G T +CGSAA A+   +    K
Sbjct: 176 LLSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAVAIYYKK 235

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMT--GEAKKEWEGKLD 280
            N+ + V    G L + W    + FM+  G A   ++GK++
Sbjct: 236 LNKKIKVNFSRGNLYVYWEKIGN-FMSIIGPANHIYDGKIN 275


>gi|157964498|ref|YP_001499322.1| diaminopimelate epimerase [Rickettsia massiliae MTU5]
 gi|167012037|sp|A8F1I9|DAPF_RICM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157844274|gb|ABV84775.1| Diaminopimelate epimerase [Rickettsia massiliae MTU5]
          Length = 270

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     +K  T       L+   N + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVNDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH I F +  L   D    
Sbjct: 122 SFNEAWMP-------SRDKVWAFAERYMIDLKETICVDIGNPHLIIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERG GLT ACGS AC S  A   L   +
Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              ++    G L ++  +N ++ M G A     G+
Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265


>gi|228929965|ref|ZP_04092976.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829645|gb|EEM75271.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 268

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI     A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137
            ++      ++   FT ET+ GI+ A+   +        +DMG P L    IP+    + 
Sbjct: 64  AKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      + F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K  R   ++V + GG L
Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWIEEGNVLMKGPAEVICHGVYE 263


>gi|261749330|ref|YP_003257015.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497422|gb|ACX83872.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 267

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 37/289 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           +DF K +G GN  +++D R          +             D I+LI +  D S D +
Sbjct: 3   MDFFKYQGTGNDFIILDNRKKRIPEEDHTLFTRLCDRHFGIGADGIILIKN--DPSRDFY 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           ++  N DG E   CGNG RC + F       K                    I  D    
Sbjct: 61  MKYYNSDGKESTMCGNGGRCAIAFSKKLGIPKENKIYFRA------------IDGDHCGI 108

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           I +  LI L             I        +    ++ G+PH + FV +++   D+   
Sbjct: 109 IQERGLISL---------KFIDIEINMIKISKKYVFLNTGSPHHVLFV-NNIKEIDVCKQ 158

Query: 184 GNLLAKHPMFSEG--VNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           G  +  H  +S    VN++   ++   +L +RT+ERGV   T +CG+   ASV+A+    
Sbjct: 159 GRKIRFHKSYSSKGGVNVNFVEISGKNTLQVRTYERGVENETLSCGTGITASVLAAYETG 218

Query: 241 KT----NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
           +      + V +  LGG L + +         +++TG  +  +EG + I
Sbjct: 219 RISTNKEKKVLISTLGGKLWVSFEKKHNQYKEIYLTGSVQFIFEGWVHI 267


>gi|318059592|ref|ZP_07978315.1| diaminopimelate epimerase [Streptomyces sp. SA3_actG]
 gi|318075956|ref|ZP_07983288.1| diaminopimelate epimerase [Streptomyces sp. SA3_actF]
          Length = 295

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 107/296 (36%), Gaps = 26/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M ++ + F K  G  N  ++I       ++  DA+ AL         D ++ +       
Sbjct: 1   MSTA-IGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DGS  + CGNG+R   R+L       +          VA   
Sbjct: 60  EGRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                 +   E       I +             +       LR    V MGNPHA+ FV
Sbjct: 114 GVKRAHLAKEEAPGAPGEITV--EMGVARLPEGEVEVRVGSGLRPATHVDMGNPHAVTFV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL           +     +  GVN+      +  +L +R  ERG G T +CG+ ACA
Sbjct: 172 -TDLAEAGELRTAPEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSCGTGACA 230

Query: 232 SVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VA+         +T R    +V + GG L I    +  V MTG A    EG +D
Sbjct: 231 VAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGTID 286


>gi|15604280|ref|NP_220796.1| diaminopimelate epimerase [Rickettsia prowazekii str. Madrid E]
 gi|6225239|sp|Q9ZDB7|DAPF_RICPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|3860972|emb|CAA14872.1| DIAMINOPIMELATE EPIMERASE (dapF) [Rickettsia prowazekii]
 gi|292572028|gb|ADE29943.1| Diaminopimelate epimerase [Rickettsia prowazekii Rp22]
          Length = 270

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 18/278 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++F KM G+GN  ++++ R      N++  A N          DQ ++       + D
Sbjct: 3   NKINFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYE----ENND 58

Query: 62  AF-IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            + + I N DGS  + CGN +RC+ + +     +++ T    +  L+        ISV++
Sbjct: 59  FYTMIIYNIDGSSAKLCGNAIRCLAKLIYLDTGKQNITVMVGKKKLLCNVKAANKISVNV 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G    +   +P            +       L L+    V +GNPH I F +  L   D 
Sbjct: 119 GNVSFNETWMP-------SRDKIWKFAERYMLDLKEMLCVDIGNPHLIIFSK--LEPQDK 169

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G  L    +F++GVN++ A V     + L  WERG GLT ACGS ACAS  A   L 
Sbjct: 170 TIIGQKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACASFAAGLKLG 228

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
             +   +V    G L I   ++ ++ M G A     G+
Sbjct: 229 FVHSPSTVVFEYGNL-IMREEDGNIIMQGAATFVMRGE 265


>gi|291288390|ref|YP_003505206.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885550|gb|ADD69250.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809]
          Length = 270

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 25/280 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  + ID R    +            + + +   D +MLI +   A  D 
Sbjct: 3   IPFYKMSGAGNDFIFIDNRDGKADGIDRQTLVTKTCARNISVGADGMMLIENSDKA--DF 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  NCDGSE + CGNG RC  RF   + +  +  TFET+ GI+ A+     ++ V + 
Sbjct: 61  KWRFYNCDGSEAEMCGNGARCAGRFAYLNNITGEKMTFETLAGIIEAEIKEGVNVKVQLT 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +                             +   V+ G PHA+ F  +D+ + D+ 
Sbjct: 121 TPFDEKSD----------------YQIELDEKKLDISSVNTGVPHAVMFC-NDIENIDIM 163

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239
             G+ +  H  F   G N +   +     L +RT+ERGV   T ACG+   A  + +   
Sbjct: 164 KLGSGIRYHSHFEPAGTNTNFCEMNKDGVLRVRTYERGVEGETMACGTGCVACALFAVKK 223

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T   V  K   G +L  + +N  V++ GEA+  ++G+L
Sbjct: 224 GLTKSPVKCKTTSGLMLTVYLENGKVYLEGEARVVYKGEL 263


>gi|302522292|ref|ZP_07274634.1| diaminopimelate epimerase [Streptomyces sp. SPB78]
 gi|302431187|gb|EFL03003.1| diaminopimelate epimerase [Streptomyces sp. SPB78]
          Length = 295

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 107/296 (36%), Gaps = 26/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M ++ + F K  G  N  ++I       ++  DA+ AL         D ++ +       
Sbjct: 1   MSTA-IGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DGS  + CGNG+R   R+L       +          VA   
Sbjct: 60  EGRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                 +   E       I +             +       LR    V MGNPHA+ FV
Sbjct: 114 GVKRAHLAKEEAPGFPGEITV--EMGVARLPEGEVEVRVGSGLRPATHVDMGNPHAVTFV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL           +     +  GVN+      +  +L +R  ERG G T +CG+ ACA
Sbjct: 172 -TDLAEAGELRTAPEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSCGTGACA 230

Query: 232 SVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VA+         +T R    +V + GG L I    +  V MTG A    EG +D
Sbjct: 231 VAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGTID 286


>gi|326443854|ref|ZP_08218588.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 109/291 (37%), Gaps = 20/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           V F K  G  N  ++I       ++ +  +  L         D ++ +            
Sbjct: 15  VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 74

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG+R   R+L       +          V + + D ++
Sbjct: 75  ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 134

Query: 117 S-VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
              D          I ++     +  +   +G            VSMGNPHA+ FV+ DL
Sbjct: 135 PGADGTTARSAPGAITVSMGRAVLPAETVTVGV--GARQWPTTHVSMGNPHAVAFVD-DL 191

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H              ++ +GVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 192 DHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGETRSCGTGACAVAVA 251

Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +      + AV       +V + GG L+I    +  V MTG A    EG +
Sbjct: 252 AARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEGTI 302


>gi|114568573|ref|YP_755253.1| diaminopimelate epimerase [Maricaulis maris MCS10]
 gi|114339035|gb|ABI64315.1| diaminopimelate epimerase [Maricaulis maris MCS10]
          Length = 294

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/276 (35%), Positives = 154/276 (55%), Gaps = 14/276 (5%)

Query: 11  MEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHD-FQDASVDAFIRII 67
           M G GNK ++ D   R    N+++D++ A++      FDQ++++ D     + DAF+RI 
Sbjct: 28  MNGAGNKFILADVRGRAGVFNLSADSVKAMARAH--PFDQLLVLEDS---DTSDAFMRIW 82

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DG EV +CGNG R     +       + + +T  G+L+A++    S+SVDMGEP LDW
Sbjct: 83  NSDGDEVGACGNGTRAAAWAMMQETGSDTLSLDTAGGVLLARDAGPMSVSVDMGEPRLDW 142

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IPL R  D +  D       + + +  P  VSMGNPHA+FF+  D+ ++ +   G ++
Sbjct: 143 TEIPLVRPMDTLQLD--FAVEKDGVRIEAPGAVSMGNPHAVFFI-RDIANFPVTGLGPVV 199

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
              P+F E VN   A++     + LR WERG G+TAACG+ ACA++VA+      +R   
Sbjct: 200 EHAPLFPERVNAGFAQILDARHIRLRVWERGAGITAACGTGACAALVAAHRRGLCDRQAM 259

Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
           +   GG L +EW   +NHV +TG  +   EG +++ 
Sbjct: 260 IHADGGDLSVEWRKSDNHVILTGPVED--EGPIELD 293


>gi|294815503|ref|ZP_06774146.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
 gi|294328102|gb|EFG09745.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 321

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 109/291 (37%), Gaps = 20/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           V F K  G  N  ++I       ++ +  +  L         D ++ +            
Sbjct: 18  VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 77

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG+R   R+L       +          V + + D ++
Sbjct: 78  ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 137

Query: 117 S-VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
              D          I ++     +  +   +G            VSMGNPHA+ FV+ DL
Sbjct: 138 PGADGTTARSAPGAITVSMGRAVLPAETVTVGV--GARQWPTTHVSMGNPHAVAFVD-DL 194

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H              ++ +GVN+          + +R  ERG G T +CG+ ACA  VA
Sbjct: 195 DHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGETRSCGTGACAVAVA 254

Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +      + AV       +V + GG L+I    +  V MTG A    EG +
Sbjct: 255 AARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEGTI 305


>gi|157825700|ref|YP_001493420.1| diaminopimelate epimerase [Rickettsia akari str. Hartford]
 gi|166225748|sp|A8GND7|DAPF_RICAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157799658|gb|ABV74912.1| diaminopimelate epimerase [Rickettsia akari str. Hartford]
          Length = 270

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      +++  A N          DQ ++  +  D      
Sbjct: 5   INFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     +K  T       L+     + +ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGSV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            + +     + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNEAWMP-------SRDKIWELAERYMIDLKETICVDIGNPHLVIFSK--LEPQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F++GVN++ A V     + L  WERGVG T ACGS AC S  A   L   +
Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
               V    G L ++  +N ++ M G AK   +G+
Sbjct: 232 APSMVVFKHGILTMK-EENGNIIMQGSAKLVAQGE 265


>gi|258405993|ref|YP_003198735.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692]
 gi|257798220|gb|ACV69157.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692]
          Length = 281

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 108/282 (38%), Gaps = 23/282 (8%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITS--DAINALSTD-DNTHFDQIMLI-HDFQDASVDAFI 64
            KM+G GN  ++ID         +  +    +         D ++ +     D+  D   
Sbjct: 12  YKMQGSGNDFILIDNTESRVPQKAMAEWAQKICRRAFGAGADGLIFLDEAPADSEADYIW 71

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS  + CGNG RC  R      +  ++    T  G + A+             P
Sbjct: 72  HFYNADGSRAEMCGNGSRCAARLAYELELAGRTHVLGTDAGPVRAEVL-----------P 120

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             D   + L    D                      V+ G PH +  V+D          
Sbjct: 121 ETDEAKVQLTAPIDLKTSMTLSAAGRE----LTVHHVNTGVPHVVQVVDDVDSVDLATIA 176

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
             L         G N++  +VT  +++ LRT+ERGV   T ACG+ A A+V  +  L   
Sbjct: 177 PALRYHDAFAPAGGNINFIQVTGPDTIRLRTYERGVEDETYACGTGAAAAVYIANQLGLC 236

Query: 243 NRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
             A +V   GG  L I   +N ++++ G+A   ++G+L +++
Sbjct: 237 APAATVTTSGGEHLTIS-QENGNLYLQGQAVLVYKGRLFLRS 277


>gi|333024035|ref|ZP_08452099.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071]
 gi|332743887|gb|EGJ74328.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071]
          Length = 295

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 105/296 (35%), Gaps = 26/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M ++ + F K  G  N  ++I       ++  DA+ AL         D ++ +       
Sbjct: 1   MSTA-IGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DGS  + CGNG+R   R+L       +          VA   
Sbjct: 60  EGRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                 +   E       I +             +       LR    V MGNPHA+ FV
Sbjct: 114 GVKRAHLAKDEAPGVPGEITV--EMGVARLPEGEVEVRVGSGLRPATHVDMGNPHAVTFV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL           +     +  GVN+      +  +L +R  ERG G T +CG+ ACA
Sbjct: 172 -TDLAEAGELRTAPEVLPASAYPHGVNVEFVVDRAPGALVMRVHERGSGETRSCGTGACA 230

Query: 232 SVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VA+      +          +V + GG L I    +  V MTG A    EG +D
Sbjct: 231 VAVAAARRDGLDPARTGHPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGTID 286


>gi|332876916|ref|ZP_08444669.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685024|gb|EGJ57868.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 263

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 39/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F K +G GN  +++D R        T    +          D ++L+ +  D + D  
Sbjct: 1   MNFYKYQGTGNDFVMVDNREGTFPKGDTELIAHLCHRRFGIGADGLILLEN--DPAYDFR 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DG E   CGNG RCVV F          S  F  I G   A  +    + + M 
Sbjct: 59  MVYYNADGRESTMCGNGGRCVVAFAREIGVMTGNSTRFIAIDGEHHATIDAQNKVHLQMK 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +                                 +   +  G+PH + +V  D+   D+ 
Sbjct: 119 DV-------------------------QTIDVHPDYVFLDTGSPHHVQWV-ADVDKVDVK 152

Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
           + G  L    ++++    +I     + +   +RT+ERGV   T +CG+   A  +A    
Sbjct: 153 TEGAALRYGDLYADKGGSNINFVSPTADGFAVRTYERGVEDETYSCGTGVTAVAIALYHT 212

Query: 240 HKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
            +     V++   GG L + +         V+++G A+K ++  
Sbjct: 213 AQITTPAVTLHTKGGDLKVTFEKQGALYQQVYLSGPAEKVFKIS 256


>gi|226312450|ref|YP_002772344.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
 gi|226095398|dbj|BAH43840.1| probable diaminopimelate epimerase [Brevibacillus brevis NBRC
           100599]
          Length = 280

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 123/291 (42%), Gaps = 29/291 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57
           M    + F KM G GN  +V+D R        +++   N      +   D  ML+ +   
Sbjct: 1   MFERGIPFKKMNGCGNDFIVVDNRDGLLNEVALSAFVQNVCRRGASIGADGFMLLENSNI 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSI 116
           A  D  +R  N DGSE + CGNG RC+ RF           +FET+ GI  A+ N++   
Sbjct: 61  A--DFKMRYFNADGSEGEMCGNGARCMSRFAYHIGAAETKMSFETMAGIYQAELNQNSVK 118

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--D 174
                 P+   KL              +     + ++         G PH ++FVE+   
Sbjct: 119 VKFPDVPLQALKL-----------NQPYEWDGPSGVYHYGVV----GVPHTVWFVENVIA 163

Query: 175 LYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACAS 232
           +    L  +G ++      F  G N++       ++L +RT+ERGV   T ACGS + A+
Sbjct: 164 IADDQLREWGRMVRNDLQQFPNGTNVNFVERIDRQTLSIRTYERGVEAETYACGSGSTAA 223

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
            + +G L   +  V++   GG L I  H  +     V++ G +    EG L
Sbjct: 224 AIIAGILGHVDTPVNLLTRGGPLKISCHLTDYAAESVYLEGNSMLVAEGYL 274


>gi|302558007|ref|ZP_07310349.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
 gi|302475625|gb|EFL38718.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
          Length = 289

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 120/308 (38%), Gaps = 39/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       ++   A+ AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGLLHVVRSAAHP 59

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK 109
                 A  + F+   N DGS  + CGNG+R   R+L     +        T  G+    
Sbjct: 60  EARHMAADAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             ++G I+V MG  +L    + ++                          V+MGNPHA+ 
Sbjct: 120 IAKEGDITVGMGGALLPEGDVTVSVGGR----------------SWPARNVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H          +    + +GVN+          + LR  ERG G T +CG+ A
Sbjct: 164 FVD-DLAHAGDLLGPPPFSPATAYPDGVNVEFVVDRGPRHVALRVHERGSGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      +  V+       V + GG L+I    +  + MTG A    EG+++  
Sbjct: 223 CAVAVAAARRDGIDPRVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEIE-- 280

Query: 283 TGKWIKKN 290
             +W++  
Sbjct: 281 -AEWLESA 287


>gi|325105470|ref|YP_004275124.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145]
 gi|324974318|gb|ADY53302.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145]
          Length = 280

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 41/289 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    +      I  +         D +M +   Q    D  
Sbjct: 17  LKFYKYQGAGNDFIIVDNRENEVDHRNPALIEGICNRRFGVGGDGMMFLQ--QKDGYDFE 74

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG RC+V F        S T F  + G   AK +  G        
Sbjct: 75  MVYYNSDGQPSSMCGNGGRCIVAFAKYLKVIDSETDFLAVDGPHYAKVSDSGDWV----- 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                       S   ++ D       +       +V++ G+PH +  V+D         
Sbjct: 130 ------------SLQMINVDVIKKDGED-------YVLNTGSPHYVRLVDDLQNVDMYEE 170

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS----G 237
              +       ++G+N++       + L +RT+ERGV   T ACG+   A  +A      
Sbjct: 171 GRKVRYNDTYKAQGINVNFVEDEG-DHLFVRTYERGVEDETYACGTGVTAVALAMAKYQN 229

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDIK 282
              + +  V V  LGG L I +  +      +F+ G AKK +EG+LD+ 
Sbjct: 230 RTGEISTPVKV--LGGNLNIRFKYDGEKYEDIFLEGPAKKVFEGELDLA 276


>gi|331003256|ref|ZP_08326763.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330412909|gb|EGG92289.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 270

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 15/281 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+  GN  + +D       N    AI           D ++LI     A  D  +
Sbjct: 1   MKFIKMQAAGNDYVYVDCFKEKIENPGEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DGS    CGNG RCV ++       KS  F    G  +        I ++  + +
Sbjct: 59  DMYNADGSRGLMCGNGSRCVAKYAYDHGYVKSKNFTMETGAGI------KYIEIEEKDGV 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLAS 182
             +  + + ++F       F      +   +    V +GNPHA+++VE  D+L   +L +
Sbjct: 113 AHYINVNMGKAF---ITSEFPEKISINGEEKEFIGVDVGNPHAVYYVETLDELKGMNLEA 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G    +H  F + VN     V   +++ +R WERG G T ACG+ ACA+  A+      
Sbjct: 170 VGEYYERHKRFPDKVNSEFIYVEDEKNIHMRVWERGSGETLACGTGACAAAFATMKKGLC 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
              V V +LGG L I    N+ ++M G A+  + G+++ ++
Sbjct: 230 ENMVRVHLLGGDLDISLV-NDEIYMRGRAEYVFFGEINFQS 269


>gi|322369889|ref|ZP_08044451.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253]
 gi|320550225|gb|EFW91877.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253]
          Length = 278

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 16/280 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-HDFQDASVDAFI 64
           + F K  G GN  ++++   C  + +  A       D    D ++ +  + +       +
Sbjct: 3   LSFEKYHGTGNDFVIVNPDACVPHRSRFARRVCDRTDGIGADGVLFLALEPEFRPPRVIM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            ++  DGS  + CGNG RC   +   R        +T+ G   AK +  G  +++MG P 
Sbjct: 63  TLVQPDGSTAEMCGNGARCAAVWAAERANADEVMIDTLAGTRHAKIHDGG-ATIEMGAPE 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+A     ++           +   +   V+ G PHA+ FV+ D+   +L    
Sbjct: 122 FGPNDVPVAGDEPLIE---------TRVGDYDVTAVNTGVPHAVAFVD-DVTAVNLERDA 171

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243
             +    +F EG N++ A        D RT+ERGV   T +CG+ A A   A+  L  T+
Sbjct: 172 PPIRHADVFPEGANVTFASPCD-GGFDQRTFERGVEGETQSCGTGAVAIAAAARRLGLTD 230

Query: 244 -RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              VSV   GG L +   D+ +  +TG  ++E+ G L + 
Sbjct: 231 GENVSVSPPGGDLEVTV-DDRNATLTGPVEREFGGDLRVS 269


>gi|88803641|ref|ZP_01119165.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P]
 gi|88780374|gb|EAR11555.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P]
          Length = 256

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 44/287 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDDNTHFDQIMLIHDFQDASVD 61
           ++F K +G GN  ++ID R    N   D I               D ++LI +  D ++D
Sbjct: 3   LNFYKYQGCGNDFVMIDNRSQTFN--KDTINTISKLCDRHFGIGADGVILIEN--DLALD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDM 120
             +   N DGS+   CGNG RC V F       K+ T F    G   +K   +       
Sbjct: 59  FKMVYYNPDGSQT-FCGNGGRCAVSFAHFLGIIKNETNFTAFDGTHFSKIKNN------- 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                                    I   +   L     ++ G PH +  V  DL ++D+
Sbjct: 111 -------------------IVSLKMIDVSDIQILEQAVFLNTGTPHHVQVV-TDLSNFDV 150

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
              G  +      S G N++     +  +  +RT+E+GV   T ACG+   A  +A    
Sbjct: 151 FREGEKIRYT-YKSPGSNVNFVEQINDTTFQVRTYEKGVENETLACGTGVTAVAIAMHKT 209

Query: 240 HKTNRA-VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
            KTN   +++ + GG L + + +      ++F+ G A   ++GK++I
Sbjct: 210 KKTNSTSITLPVAGGILEVSFTEKEGVYENIFLRGAASFVYQGKIEI 256


>gi|290956961|ref|YP_003488143.1| diaminopimelate epimerase [Streptomyces scabiei 87.22]
 gi|260646487|emb|CBG69584.1| diaminopimelate epimerase [Streptomyces scabiei 87.22]
          Length = 289

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 121/309 (39%), Gaps = 39/309 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M +  + F K  G  N  +++       +++  A+ AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPENAIDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK 109
                 A  + F+   N DGS  + CGNG+R   R+      +     T  T  G+    
Sbjct: 60  EARELAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLLHAGHVAEGDLTVATRGGVKRVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++DG ++V MG   L    + ++                          V+MGNPHA+ 
Sbjct: 120 IDKDGDVTVGMGGARLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL            +    + +GVN+          + +R  ERG G T +CG+ A
Sbjct: 164 FVD-DLAQAGDLLSPPPFSPASAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + A+       +V + GG L+I    +  + MTG A    EG++D  
Sbjct: 223 CAVAVAAARRDGVDPAITGTPATYTVDVPGGTLVITERADGEIEMTGPAVIVAEGEID-- 280

Query: 283 TGKWIKKNE 291
             KW++   
Sbjct: 281 -AKWLETAA 288


>gi|301057678|ref|ZP_07198753.1| diaminopimelate epimerase [delta proteobacterium NaphS2]
 gi|300448224|gb|EFK11914.1| diaminopimelate epimerase [delta proteobacterium NaphS2]
          Length = 276

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 110/288 (38%), Gaps = 32/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           V+F KM G GN  +VID R       ++           ++   D ++ + D +    D 
Sbjct: 4   VEFWKMSGTGNDFIVIDNRKGLVTAQDMAHLVARTCRRRESVGADGVIFVTDSEK--YDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
             R  N DG EV+ CGNG RCV RF   +       TFET+ G + A+      + V + 
Sbjct: 62  GWRFFNADGGEVEMCGNGGRCVSRFAFLKGIAGSRMTFETLVGPISAEVKGR-MVKVLLP 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   + L      +  D                 V+ G PH +  V D   H    
Sbjct: 121 APRNEATDVDLPFLAGWLSCD----------------FVNTGVPHVVVQVSDLEKHPVFD 164

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH 240
               L        EG N +   +     L +RT+ERGV   T ACG+ A AS + +    
Sbjct: 165 QGRELRYHEKFSPEGTNANFMTIVGPHELAVRTYERGVEGETLACGTGAVASALMAFRRG 224

Query: 241 KTNRAVSVKMLGGGLLI--------EWHDNNHVFMTGEAKKEWEGKLD 280
             +  V+V   GG  LI        +    + +++ G     +   L+
Sbjct: 225 SVSSPVTVHTQGGEELIIHLSSEGEDVRTGDRIWLQGNTSVIYTATLN 272


>gi|311745093|ref|ZP_07718878.1| diaminopimelate epimerase [Algoriphagus sp. PR1]
 gi|126577607|gb|EAZ81827.1| diaminopimelate epimerase [Algoriphagus sp. PR1]
          Length = 263

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 99/285 (34%), Gaps = 39/285 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R  + +    A+             D ++LI + +D   D  
Sbjct: 9   ITFYKYQGTGNDFVMIDDRKENFDAGDLALVSKICDRKFGVGADGLILIRNHKD--YDFE 66

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DGS+   CGNG RC V F     +      F  I G   A              
Sbjct: 67  MIYFNADGSQS-MCGNGARCAVAFSAFLEIISDKTQFLAIDGPHEAIIQDG--------- 116

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                              + V+ G+PH +  V     +     
Sbjct: 117 -----------------LVQLLMGDVEKIEEKAEDYFVNTGSPHHVRMVSKISDYPVFDE 159

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             ++         G N++     S E + +RT+ERGV   T +CG+   A  +      +
Sbjct: 160 GKSVRYDEMYAPAGTNVNFVEPISKEEIYVRTYERGVENETLSCGTGVTACALV-YAKDQ 218

Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281
               + +  LGG L + +          +++ G A++ + GK+ I
Sbjct: 219 DKAEIKINTLGGKLSVRFTAGQTGGFQDIWLIGPAEQVFTGKIKI 263


>gi|302035973|ref|YP_003796295.1| diaminopimelate epimerase [Candidatus Nitrospira defluvii]
 gi|300604037|emb|CBK40369.1| Diaminopimelate epimerase [Candidatus Nitrospira defluvii]
          Length = 289

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F +  G+GN  +V+D       +T   I  +         D I+ +   + A  D  +RI
Sbjct: 5   FFRGHGLGNDYVVMDPTELTFTLTPGKIRGICDRHWGLGSDGILALVPSKKA--DFGLRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS-----ISVD 119
            N DGSE +  GNG+R   R+L +  + K+++FT ET  G++    + D        +V+
Sbjct: 63  YNPDGSEAEKSGNGLRIFARYLHATGKTKKRAFTVETKGGLVSIALHIDRHGDAAAATVE 122

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177
           MG        +P   S D++ +           F      VS+GNPH + F +  +    
Sbjct: 123 MGRATFQPSALPCTLSVDELIQQPIEAAGRALQFTG----VSVGNPHCVIFKQAGETWTR 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
            +L + G +L  HP+F +  N+ +A  T  + + +  WERG G T A GS++CA+  A+ 
Sbjct: 179 EELLALGPVLENHPLFPKRTNVQLAVPTGPKEIFILIWERGAGETQASGSSSCAAASAAV 238

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L      V+VKM GG L IE   +  + M G   +   G L
Sbjct: 239 RLGLVKGPVTVKMPGGTLNIEVARDFSLTMKGPVAEVARGAL 280


>gi|163815601|ref|ZP_02206974.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759]
 gi|158449238|gb|EDP26233.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759]
          Length = 289

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 12/290 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++      +        LS        D ++LI     A  D  +
Sbjct: 1   MHFTKMEGLGNDYVYVNCFEEKVDDPQRLARLLSDRHRGVGSDGLILIGPSDKA--DFSM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            + N DGS  + CGNG+RCV +++      + +  + ET+ GI   +          +  
Sbjct: 59  AVYNSDGSIAEMCGNGIRCVCKYVYDNHMTESRRISVETLAGIKYLRCISGDRRQSIVTV 118

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-----DDLY 176
            +   ++     + D    ++     ++       F+ VSMGNPHA+ +++         
Sbjct: 119 DMGAPEIGRDRMTVDAALTEKMLEERIDVSGKMISFIRVSMGNPHAVVWLDGLDVACVTD 178

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
                S G L+ KH  F  G N+   RV   + + +R WERG G T ACG+ ACA+  A 
Sbjct: 179 GEKTMSIGALMEKHDAFPSGTNVEFVRVIDRDLIQIRVWERGSGETMACGTGACAAAAAC 238

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285
              + TN  V+V++ GG L IE+  N   + MTG A+K ++G++DI + +
Sbjct: 239 MAKNYTNNVVTVQLGGGELHIEYDRNKKTINMTGPARKVFDGQVDIFSQE 288


>gi|148547967|ref|YP_001268069.1| diaminopimelate epimerase [Pseudomonas putida F1]
 gi|148512025|gb|ABQ78885.1| diaminopimelate epimerase [Pseudomonas putida F1]
          Length = 268

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 17/270 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K    GN  LV        + +  AI+ +         D I++     +      +
Sbjct: 1   MQFVKYHAAGNDYLVYHD-KTPFDCSMLAISVICDRHRGLGSDGILI--PVIEPGKMLSV 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           +I+N DGSE +  GNG+R + R+L  +       FE +      +            + +
Sbjct: 58  QILNTDGSEAEKSGNGLRILCRYLWDQRIVSHEPFELLTKGGKVR-----------CQVL 106

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D + I +A        +  H   V+ + L    +VSMGNPH + FV+           G
Sbjct: 107 DDGRRISIAMGMATFPENERHSMEVDGMRLHL-NLVSMGNPHCVVFVDQTTE-ALARKLG 164

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             + +  +F    N+    V    +L ++ WERGVG T + G+++CA+   S  L   + 
Sbjct: 165 PTIEQLSLFPNRTNVQFVNVVDRRNLMVQIWERGVGYTLSSGTSSCAAAAVSRRLGFVDD 224

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            V+V M GG + IE  ++NHV M G   K 
Sbjct: 225 HVTVHMPGGQITIELDEDNHVLMKGPVCKI 254


>gi|312878936|ref|ZP_07738736.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
 gi|310782227|gb|EFQ22625.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
          Length = 277

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 114/286 (39%), Gaps = 27/286 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G GN  +++D R        ++ S  + A +       D ++LI + Q+  + 
Sbjct: 4   LHFWKVHGNGNDFVILDDRTGEVSRGRDLPSLTVRACARKTGLGADGVLLIQEGQEGDL- 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC  R      +      F T  G + A+   +       
Sbjct: 63  FRMRLFNADGSEGEMCGNGARCFARMLHRLGLAGTEPVFLTGLGPVTARVEGER------ 116

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178
               L+   I L  ++     +       +         + +G PHA+ + +   D+   
Sbjct: 117 --VRLEMGEIDLEEAWFDEPLE-----DRDLPPGTRWSFLHVGVPHAVLWADSWQDVSEG 169

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
            L   G     HP   +G N++ A      +L +RT+ERGV   T +CG+ +CA  V + 
Sbjct: 170 TLRWIGKKYRHHPRCPQGANVNFAAPE-EGALRVRTYERGVEDFTDSCGTGSCACGVVAV 228

Query: 238 CLHKTNRAVSVKMLGGGLLI--EWHDNNHVF-MTGEAKKEWEGKLD 280
                   V V+  GG   +      +  V  + G A    EG  +
Sbjct: 229 LRGG-PSPVEVRTPGGIQQVGCRIRGDKAVLSLAGAAVFVAEGVWE 273


>gi|283853945|ref|ZP_06371149.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B]
 gi|283570666|gb|EFC18722.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B]
          Length = 284

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 106/285 (37%), Gaps = 21/285 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61
           V F KM+G GN  + +D R    +     D + A+         D ++ +      + + 
Sbjct: 11  VPFFKMQGCGNDFVCVDNRELGYDPADMPDMVVAVCRRAFGVGADGMIFLDQAPAGSGLA 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
                 N DGS  + CGNG RC  R         +          +       S  V + 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGLAPASHVFGTDAGPIEAVVDPDSSQVTVR 130

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             + D K + +  + +   ++                 V+ G PHA+  VE DL   ++ 
Sbjct: 131 --LTDPKDLRMDLTVEIEHQELPLH------------FVNTGVPHAVAVVE-DLEAVEVW 175

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +  H  F   G N++   V     L LRT+ERGV   T ACG+ A AS V +  L
Sbjct: 176 KLGRAVRFHEFFKPAGTNVNFVAVEGPGRLSLRTYERGVEDETYACGTGAVASAVVARKL 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             T     +   GG  L     +   ++ G A+  + G    ++ 
Sbjct: 236 GLTGEETVITTTGGEELGVILKDGKTYLRGAAELVFTGAFFPQSL 280


>gi|256423679|ref|YP_003124332.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588]
 gi|256038587|gb|ACU62131.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588]
          Length = 261

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 39/287 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    N +T + ++ L         D +ML++  +    D  
Sbjct: 4   IHFYKYQGTGNDFVIMDNRNGEYNFLTEEQVHFLCDRRFGIGADGLMLLN--KQEGYDFG 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           ++  N DG E   CGNG RC+V F     +  +  +F  + G   A    D  +++ M +
Sbjct: 62  MKYYNADGRESSMCGNGGRCLVAFARKMGLTDEKLSFLAVDGPHEATLKGDDWVNLKMQD 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                                ++ G+PH + FV  D+   D+ +
Sbjct: 122 VS-------------------------GVEINSLHSYLNTGSPHYVKFV-ADVKAVDVYN 155

Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
            G  +  +  F  EG N++  +        +RT+ERGV   T +CG+   A+ + +    
Sbjct: 156 EGKQIRYNDRFAKEGTNVNFVQSLDKGIF-VRTYERGVEDETYSCGTGVTAAALMTAGAE 214

Query: 241 KTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDIK 282
                V V+ LGG L + +        N++++ G A   +EG + + 
Sbjct: 215 TKEYIVPVQTLGGKLEVRFTRIGEKAYNNIWLCGPATLVFEGNITLP 261


>gi|253582412|ref|ZP_04859635.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725]
 gi|251835951|gb|EES64489.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725]
          Length = 278

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 125/283 (44%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+  GN  ++++       N    A            D +M       A  D  +
Sbjct: 1   MKFSKMQAAGNDFILVNGMIEKSLNWNETAKKVCDRHFGIGADGLMFCESSSKA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKEN-----RDGSIS 117
              N DGS  + CGNG+RC  +F+      K   F  ET  GI   K +         + 
Sbjct: 59  YYYNSDGSRGEMCGNGIRCFAKFIYDNGIVKKEKFSVETDAGIKYIKLDIGIEGNIEYLE 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDMG+     K IP     + +  +   I     +F      V MG PH   FVE +   
Sbjct: 119 VDMGKIDFRGKEIPCTIQKENILEEEIFIENKKIVFSS----VLMGVPHTTIFVE-NFDE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G+L+ K+ +F E  N++ A++ + +++ ++TWERG G T  CG+  CA+   + 
Sbjct: 174 YDVNEIGSLMEKNDIFPEKTNVNFAKIITNDTIMIKTWERGAGRTLGCGTGCCATAALAY 233

Query: 238 CLHKTNRAVSVKM-LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L K  +     +  GG L IE  +N  + M+G+A+    G+ 
Sbjct: 234 KLGKIKKNKIKLLAEGGELFIEIGENYEITMSGKAETICHGEF 276


>gi|313127022|ref|YP_004037292.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551]
 gi|312293387|gb|ADQ67847.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551]
          Length = 289

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 23/284 (8%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--------HFDQIMLI-HDFQDASV 60
           K  G GN  +V+D      +  + A    + +             D ++ +  + + +  
Sbjct: 12  KYHGTGNDFIVVDADESVPDRPAFASAHCNRESGIDGDGSERRGADGVLFLALEGRYSPP 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              + ++  DGS    CGNG RC   +   R        +T  G   A       ++++M
Sbjct: 72  RVVMTLVQPDGSVAAMCGNGARCAAAWAAERTGSDELMIDTPAGTRHAVVED-DRVTIEM 130

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + +PLA         R        +       ++ G PHAI FV+ D+    L
Sbjct: 131 GAPSFRPRDVPLA---------REEELVEEEIEGLTVTALNTGVPHAIAFVD-DVDAVAL 180

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239
            S    +    +F +G N+++A      S   RT+ERGV   T +CG+ A A V A+  +
Sbjct: 181 ESVAPAVRHADVFPDGANVTVASQNDDGSFRQRTFERGVEGETQSCGTGAVAVVAAAKRV 240

Query: 240 HKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +    V+V   GG L I   D+    +TG A+ E+E +LD+
Sbjct: 241 GLVDGDDPVTVSPPGGELEITVPDDGPATLTGPAEHEFETELDV 284


>gi|317125288|ref|YP_004099400.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043]
 gi|315589376|gb|ADU48673.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043]
          Length = 424

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 24/294 (8%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           + M  F K  G  N  +++        +T   +  L+        D ++ I   + A+ D
Sbjct: 140 TVMTRFTKGHGTENDFVLVPDPEGTLELTPAQVQRLADRRAGIGGDGVIRIVPTRHATED 199

Query: 62  ----------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAK 109
                      F+   N DGS  + CGNG R    FL         TF   T  GI   +
Sbjct: 200 SVRAQAAQAEWFMDYRNADGSLAEMCGNGTRVFASFLVREGMVHGDTFDIATRAGIKHVR 259

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +G           D       +   +   D               F   +GNPHA+ 
Sbjct: 260 VVPEGFAVDLGPWRYGD------EQGARRDGFDIMVRPRHGKPVPALTF--DLGNPHAVV 311

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            + D +   +L          P    G+N+   +      + +R  ERGVG T +CG+ A
Sbjct: 312 MLPDGIELENLD-LTAPPDVQPAQPNGINVEFVKAVGPAHIAMRVHERGVGETRSCGTGA 370

Query: 230 CASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+ +A+             V + GG L +     N V + G A+   +G + +
Sbjct: 371 AAAALATRFWSGVEDLAPWRVDVPGGTLTVTPLAGNRVELAGPAELVADGDVSL 424


>gi|218960621|ref|YP_001740396.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729278|emb|CAO80189.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 262

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 30/282 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRG------CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58
           ++ F KM   GN  +++D            + +S A            D ++L+    + 
Sbjct: 2   LIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLLMP--NE 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           S DA + I N DGS  + CG+ +RCV   L  +  +K F  +T  G+     N D +I+V
Sbjct: 60  SCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTITV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           ++G P +      L  ++  MD                  +V +GN H I +V + L   
Sbjct: 120 NLGMPSM------LKSAYQVMD--------------FTGDLVEIGNQHFIVWV-NSLKDD 158

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
               +G+ +  H  F++ VN+  A + +  ++ ++ WE+G G T ACG+ A A+V +   
Sbjct: 159 PHLQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFSGIA 218

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               N  V V M GG + I    N ++ ++GE  + ++G  +
Sbjct: 219 KGLLNNEVEVLMPGGIVKINASANGYL-LSGEVCQSFQGVYN 259


>gi|327398434|ref|YP_004339303.1| Diaminopimelate epimerase [Hippea maritima DSM 10411]
 gi|327181063|gb|AEA33244.1| Diaminopimelate epimerase [Hippea maritima DSM 10411]
          Length = 277

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 33/287 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
           + F KM G GN  ++I+ R             + +  +     +   D ++LI   +D  
Sbjct: 4   IPFFKMNGSGNDFIIINNRRNIVEEMVDIPIHEFVRRVCERKLSVGADGLILIE--KDNE 61

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISV 118
            D   R  N DGSE + CGNG RC  RF         S  F T+ G++ A+     ++ V
Sbjct: 62  YDFRWRFFNSDGSEAEMCGNGSRCAARFAYLNNIAPLSMKFLTLAGVIEAQITGLNTVRV 121

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            + +P    + I L                           ++ G PHA++FV       
Sbjct: 122 QLTQPKDYKENIEL------------------DGVDMPLSFINTGVPHAVYFVSSVDVVD 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
                           EG N++   V +  +L +RT+ERGV   T ACG+ A AS + + 
Sbjct: 164 VKTIGEKTRYHEYFAPEGTNVNFVEVVNSHTLRIRTYERGVEDETLACGTGATASALIAI 223

Query: 238 CLHKTNRAVSVKMLGGG-LLIE-WHDNNH---VFMTGEAKKEWEGKL 279
              K    V V    G  L I  + +N+    V++ G+A   + G +
Sbjct: 224 LKGKCETPVEVITKSGNRLKIYAYIENSEVKRVYLEGDALLTYIGTM 270


>gi|295109033|emb|CBL22986.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
          Length = 282

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 15/278 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           +M+   K +G+GN  LV+D       +    I  L         D ++      + +   
Sbjct: 6   TMI---KYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGVLY--GPVEINGKM 60

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118
            + I N DGSE    GNG+R   ++L      K   F         +            V
Sbjct: 61  GVHIYNSDGSEAAISGNGVRIFAKYLIDHEYVKEQKFSIETLSGPVEVECLNSRATEFRV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           +MG+     + IP+     ++  + F     ++        +++GNPH I F++ ++   
Sbjct: 121 NMGKASFISREIPVTGEVREVINETFTFNKKDYK----ATCLTVGNPHCIIFMD-EVSPE 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
                G  +     F E +NL I R     +LD+  WERG G T A G+ +CA+ VA+  
Sbjct: 176 IAKDLGPYVENADEFPERMNLQICRRIDSGNLDIEIWERGSGYTKASGTGSCAAAVAAYR 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           L  T   ++V   GG + I+  D++ ++MTG      +
Sbjct: 236 LGLTESRINVNQPGGIIQIDIKDDDTIYMTGSVGYVAD 273


>gi|294101242|ref|YP_003553100.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261]
 gi|293616222|gb|ADE56376.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261]
          Length = 281

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 127/287 (44%), Gaps = 28/287 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M++F K++G GN  +VID R       +++  A +      +   D ++++   +  +  
Sbjct: 1   MLEFTKIQGNGNDFIVIDNREGSMTSPDLSRLAASICERRQSVGADGLLVVEMSEREN-- 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +R+ N DGSE + CGNG RC+ R+   +          I G  ++ E   G I   + 
Sbjct: 59  FTMRLFNNDGSEGEMCGNGARCIARYAWEKK---------IAGEKMSFETLAGPIHGVVT 109

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYD 179
            P      + L      + +  +               + +G PH + FV++  D  H  
Sbjct: 110 APF-----VELDMGETNLSQGFWGQSLKVEGETFPFVYLVVGVPHCVLFVDNLEDFSHDS 164

Query: 180 LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           L   G  +      F +G N++  + +   +L + T+ERGV  LT +CG+ + AS +A+ 
Sbjct: 165 LRDIGRTVRYDTHRFPKGTNVNFVQRSGERTLKVVTYERGVEDLTLSCGTGSTASAIAAS 224

Query: 238 CLHKTNRAVSVKMLGGG--LLIEWHDNNHV---FMTGEAKKEWEGKL 279
            + +    + V+  GG   + + +++   +   ++TG+     EG+L
Sbjct: 225 IVWEMAAPIQVQNPGGDNWVTVSFNETRSICKTYLTGKTVMIAEGRL 271


>gi|29829015|ref|NP_823649.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680]
 gi|29606121|dbj|BAC70184.1| putative diaminopimelate epimerase [Streptomyces avermitilis
           MA-4680]
          Length = 289

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 39/309 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M +  + F K  G  N  +++       ++   A+ AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGVLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109
                 A  + F+   N DGS  + CGNG+R   R+L              T  G+    
Sbjct: 60  EAREMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQRAGHVTEGDLAVATRGGVKTVH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
             +DG ++V MG+  L    + ++                          V+MGNPHA+ 
Sbjct: 120 IAKDGDVTVGMGKAFLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H          +    + +GVN+      +   + +R  ERG G T +CG+ A
Sbjct: 164 FVD-DLAHAGDLLAPPPFSPPTAYPDGVNVEFVIDRAPGHVAMRVHERGSGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      + AV+       V + GG L+I    +  + MTG A    EG++D  
Sbjct: 223 CAVAVAAARRDGADPAVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEID-- 280

Query: 283 TGKWIKKNE 291
             +W++   
Sbjct: 281 -AEWLENAA 288


>gi|167752322|ref|ZP_02424449.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216]
 gi|167660563|gb|EDS04693.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216]
          Length = 270

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 31/284 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + FAK EG GN  +++D+R       +++             D +M +     +  D  +
Sbjct: 3   MRFAKYEGAGNDFILLDLRNGGATPQSAEIARLCDRHFGIGADGLMTLAASAVSGCDCSM 62

Query: 65  RIINCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           R  N DGS  + CGNG RC         +      F++  GI  A+  R   +       
Sbjct: 63  RYYNADGSPGEMCGNGGRCFALFAHHLGIGGDIKRFDSTDGIHEARMLRIDGLRS----- 117

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                          +D +R   G          + +  G PH + F + DL   D+   
Sbjct: 118 ---------TVELGMIDVERIDRGD-------GYWFLDTGVPHYVEFTD-DLEAVDVIGR 160

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
           G  +     F++G N++  +V     + +RT+ERGV   T ACG+ + A+ + +    + 
Sbjct: 161 GRRIRYDKRFAKGTNVNFVKVVGPGHIAVRTYERGVEDETLACGTGSTAAALVTHLAAQP 220

Query: 243 NRAV-SVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLD 280
           +     + + GG L I + +        + ++GEA+K +EG  D
Sbjct: 221 SVTAFRIDVRGGRLGIAFDEPKPGIYTRIRLSGEARKVFEGSYD 264


>gi|196001093|ref|XP_002110414.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens]
 gi|190586365|gb|EDV26418.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens]
          Length = 350

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 125/278 (44%), Gaps = 20/278 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDD-NTHFDQIMLIHDFQDASVD 61
           V F KM G+GN  ++++  GCH   +SD       +S  +     DQ ++     D    
Sbjct: 5   VPFVKMHGLGNDFVIVN--GCHMPKSSDIHSFAKEISDRELGVGCDQFIIYRQDSDK--- 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  ++CGN  RC+ R L      K+   +    ++  K     +I VDMG
Sbjct: 60  INMTIYNQDGSGAKACGNASRCLTRLLFDHTGAKNIKLDVDGRVVSGKYIDKNTIKVDMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P  +   +P +        +R+ I P   +       V + NPH + F +  L   D+ 
Sbjct: 120 PPSFESSWMPDSTDL-CSLAERYMIEPKEMI------CVDVANPHLVIFSK--LSKKDMG 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             GN   K  +F +GVN++ AR+     ++L  WERG G T ACGS A A+  A+  L  
Sbjct: 171 MIGNDFQKCELFPDGVNVNFARIED-NKINLTVWERGTGFTYACGSGAIATFAAANKLSF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                 +    G L ++   N+ V M+G A   + G+L
Sbjct: 230 FGDEAEIVFKLGSLKMQ-KQNDSVLMSGPASYVFTGEL 266


>gi|297570156|ref|YP_003691500.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926071|gb|ADH86881.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2]
          Length = 281

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 33/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  +++D R      T+ A     A+     +   D ++LI + +    D
Sbjct: 5   ISFTKMSGAGNDFILMDHRRPLFADTAAAQKFARAVCRRKFSVGADGLILIEESK--EAD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              +  N DGS  + CGNG RC  RF    ++      F T+ GI+ A+      + + M
Sbjct: 63  FRWQFFNADGSVAEMCGNGARCAARFAYERKIAPARMHFATLAGIIEAEITGTN-VGLTM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P                +              +   +V+ G PHA+  V+ D+    +
Sbjct: 122 TPPE---------------NLQLDLRLDDPAGGEQTVHLVNTGVPHAVLLVD-DIDVVPV 165

Query: 181 ASFGNLLAKHPMF-SEGVNLSIA--RVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
             +G     HP F   G N++       + + L +RT+ERGV   T ACG+ A A+ + +
Sbjct: 166 KEWGRHFRFHPRFAPAGANVNFVGRETATSDLLRVRTYERGVEDETLACGTGAVAAALVA 225

Query: 237 GCLHKTNRAVSVKMLG-GGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
            CL  T     V   G   L+I +H        V + G A   +EG+L
Sbjct: 226 SCLDLTAAPTRVITSGRDELVIHYHRQGRDFTGVKLEGPADFIYEGQL 273


>gi|295836154|ref|ZP_06823087.1| diaminopimelate epimerase [Streptomyces sp. SPB74]
 gi|197695250|gb|EDY42183.1| diaminopimelate epimerase [Streptomyces sp. SPB74]
          Length = 295

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 109/308 (35%), Gaps = 29/308 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M ++ + F K  G  N  ++I       ++  D +  L         D ++ +       
Sbjct: 1   MSTA-IGFLKGHGTQNDFVIIPDPENTLDLGPDTVAVLCDRRAGLGGDGLLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DGS  + CGNG+R   R+L       +          VA   
Sbjct: 60  EGRAYADDAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                 +   E       I +             +        R    V MGNPHA+ FV
Sbjct: 114 GIKRAHLANDEAPGVPGEITV--EMGVARLPEGEVEVRVGSGTRPATHVDMGNPHAVTFV 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
             DL           +     + +GVN+      +  +L +R  ERG G T +CG+ ACA
Sbjct: 172 -TDLAEAGELREAPEVLPASAYPQGVNVEFVVERAPGALAMRVHERGSGETRSCGTGACA 230

Query: 232 SVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+         +T R    +V + GG L I    +  V MTG A    EG +D   G
Sbjct: 231 VAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAILVAEGTID---G 287

Query: 285 KWIKKNED 292
            W+  +  
Sbjct: 288 DWLAASAH 295


>gi|297584692|ref|YP_003700472.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10]
 gi|297143149|gb|ADH99906.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10]
          Length = 324

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 131/306 (42%), Gaps = 20/306 (6%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDN-THFDQIMLIHDFQDASVDAF 63
            K  G GN  ++ID     D  T +        LS        D ++ I + +    DA 
Sbjct: 6   IKCHGSGNDFIIIDEMDQPDRFTEEERRSLSILLSDRKGKIGSDGLLFIQNSEH--CDAR 63

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +R+ N DG+E + CGNG+RCV R+   ++ +K    ET++  L  ++  D    +   E 
Sbjct: 64  MRMFNSDGTEAEMCGNGLRCVARYAIEKLGKKHLVIETMKADLPVRQTEDLYPDMKTYEV 123

Query: 124 ILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            ++   L P++     +                +   +S+ NPH +  V D  +    + 
Sbjct: 124 AIEPVSLDPVSLPLKTVHAPHIDRPIPALSDNLSFTALSVPNPHVVTKVNDVPHRDAESI 183

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL--H 240
                    +F  GVN+S  +  +   + ++T+ERGVGLT ACG+A  AS + S     +
Sbjct: 184 GRLANDLSDIFPNGVNVSFMKPLTKNQIFVQTYERGVGLTNACGTAMSASSLVSVLNAGN 243

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLD-------IKTGKWIKKN 290
             N  ++V   GG +    H  + V+   + G A  E+   L+       I+  +  +  
Sbjct: 244 DLNEVITVFNPGGMVQTVVHQEDEVYTIKLRGNATYEYSSDLEADLDHGYIEQLRVERYT 303

Query: 291 EDDEAY 296
           +++E Y
Sbjct: 304 DEEELY 309


>gi|298528156|ref|ZP_07015560.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511808|gb|EFI35710.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 284

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 24/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQD 57
           + S+M  F KM+G GN  ++ D    +     ++  A            D ++ + + + 
Sbjct: 4   LSSNMQQFFKMQGSGNDFILWDNTSLNLPGELMSRWAETLCPRGFGIGADGMIFLDNPRT 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI 116
              D      N DGS  + CGNG RC  R         +   F T  G + A+    G +
Sbjct: 64  QGHDFDWHFFNADGSRAEMCGNGSRCAARLAHRLGLAGREQVFGTDAGAVRAQVKDKGKV 123

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V +                   +     I         N   V+ G PHA+   + D++
Sbjct: 124 RVQLTPAE---------------NLQLHSILNFEESSPVNLHSVNTGVPHAVIICD-DVH 167

Query: 177 HYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             +++  G ++  HP     G N++  +V     + LRT+ERGV   T ACG+ A ASVV
Sbjct: 168 KVNVSGLGRMVRMHPDFAPAGTNVNFIQVKDRGHIYLRTYERGVEDETFACGTGAAASVV 227

Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            +  L     +V V   G   L I+  +   VF+TG+A   ++G L + T
Sbjct: 228 VASALGLCANSVQVVTSGKEHLNIDLQEQG-VFLTGKADFIYQGMLFLDT 276


>gi|94266454|ref|ZP_01290147.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
 gi|93452932|gb|EAT03437.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1]
          Length = 283

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 108/285 (37%), Gaps = 28/285 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F KM G GN  ++ID R      T    + A        +   D ++LI + +    D
Sbjct: 5   ITFTKMSGAGNDFILIDHRRPLLVDTAAAQAFARAVCERKFSVGADGLILIENSE--EAD 62

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
              +  N DGS    CGNG RC  RF                G  + +    G+  +   
Sbjct: 63  FSWQFFNADGSLAGMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISGTAVLLTM 122

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P    +L               H+       L     V  G PHA+ F + ++    + 
Sbjct: 123 TPPGQCRL-------------NLHLAGPTGEEL-TLHTVDTGVPHAVLFCD-EIATVPVK 167

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
            +G+    HP F   G N++     +   L +RT+ERGV   T ACG+ A A+ + +  L
Sbjct: 168 EWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVASRL 227

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKL 279
            +     +V   G  +L+  H +       V + G A   ++G L
Sbjct: 228 GRAVSPTTVVTSGREVLVIHHRDQDGQFQDVRLEGPADFIYQGSL 272


>gi|269123763|ref|YP_003306340.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112]
 gi|268315089|gb|ACZ01463.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112]
          Length = 260

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 17/276 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F K  G+GN  ++       D    + +       +   D ++++   +  + + ++ 
Sbjct: 1   MEFEKYSGLGNDFII----TEKDLTVEEIVKYCKRRKSIGADGVIIL---KKKNENFYMH 53

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS    CGNG+RC   +L                IL+   +    I +   E   
Sbjct: 54  FYNADGSLAAMCGNGIRCYAHYLY-----NHNLVSKDDEILIDTLSGIKKIRIINTEKDN 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               + +  + +  +            ++         +   IF  +++L    +  +G 
Sbjct: 109 FLVSVDMNAAINTTEIKTIEAIDRTFKYIYTFT---GTDHVVIFVDKEELNEDFVTKYGK 165

Query: 186 LLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            + ++  +F +G N++   V + E +D+ T+ERG GLT ACG+ A A    S  L KT  
Sbjct: 166 NIEQNKEVFPKGTNVNFVYVKNREEVDVITFERGAGLTLACGTGASAVGYVSNMLGKTGN 225

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            V V +LGG L IE   +  +FM G ++  ++G + 
Sbjct: 226 KVKVNLLGGSLEIEIK-DGTIFMNGISEMIYKGSVK 260


>gi|206603184|gb|EDZ39664.1| Diaminopimelate epimerase [Leptospirillum sp. Group II '5-way CG']
          Length = 290

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 128/292 (43%), Gaps = 17/292 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           DF K  G+GN  +V  M      +T + I  +         D I+L+    +      +R
Sbjct: 6   DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60

Query: 66  IINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSISV 118
           I N DGSE +  GNG+R      F       + F  ET+ G++ A+      NR   + V
Sbjct: 61  IFNPDGSEAEKSGNGLRIFAKFLFEYGYATDRHFRIETLGGMVTAEVYPDASNRVDRVKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+  +D + + LA        +   + P           +S+GNPH +FF E +L   
Sbjct: 121 DMGKATVDPRSVGLANPDKPFVEELLELAP---DLRIKGTAISVGNPHFVFFRE-ELDEK 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  +G  +  HP+F + +N  + RVT    +++R WERG G T A GS++CA+   S  
Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           L K    V V+M GG L I+      + M G   +   G         +  +
Sbjct: 237 LGKVKSPVHVRMPGGMLAIDVSPEQEIRMEGPVSEVMSGDFSPDLLALLGSS 288


>gi|78356841|ref|YP_388290.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219246|gb|ABB38595.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 283

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 111/286 (38%), Gaps = 23/286 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTD-DNTHFDQIMLIHD-FQDASVD 61
           V F KM+G GN  + ID R       +  D    +     +   D ++ + +      VD
Sbjct: 9   VPFYKMQGCGNDFVFIDNRELKLPVALMEDWARKICRRSFSVGADGLVFLEEAPDIPGVD 68

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-GILVAKENRDGSISVDM 120
                 N DGS  + CGN  RC            +        G + A+ +    +    
Sbjct: 69  YRWHFYNADGSRAEMCGNASRCAALLAFRTGFAGAEHVLGTDAGPVRARVDVAAGMVKVE 128

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  +  L  + R  D                      V+ G PHA+ +++ D    D+
Sbjct: 129 LTPPKELSLNNVLRFGD---------------ETHEIHFVNTGVPHAV-WLDADAAALDV 172

Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
            + G  L  H  F   G N +   V    ++ LRT+ERGV   T ACG+ A A  V +  
Sbjct: 173 RALGASLRYHERFAPAGTNANFVTVIDQHNILLRTYERGVEDETYACGTGAAAGAVITHA 232

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           L  T   V+V+  GG LL    ++  VF+ G+A   + G++  ++ 
Sbjct: 233 LGLTGPQVTVRSSGGELLGISLEDGSVFLEGKALLVYTGEMQPESL 278


>gi|51473603|ref|YP_067360.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington]
 gi|81610797|sp|Q68WW4|DAPF_RICTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|51459915|gb|AAU03878.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington]
          Length = 270

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 16/277 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           + ++F KM G+GN  +++  R      N++  A N          DQ ++     + +  
Sbjct: 3   NKINFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYE---EYNNV 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             + I N DGS  + CGN  RC+ + +     +K  T    +  L+        ISV++G
Sbjct: 60  YTMIIYNIDGSNAKLCGNATRCLAKLIYLDTGKKDITIMVGKKKLLCNVEAANKISVNVG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P +R       +R+ +       L+    V +GNPH I F +  L   D  
Sbjct: 120 NVSFNETWMP-SRDRIWAFAERYMLD------LKETMCVDIGNPHLIIFSK--LEPQDQK 170

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  L    +F +GVN++ A V     + L  WERG GLT ACGS AC S  A   L  
Sbjct: 171 IIGQKLQAKELFVDGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGF 229

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +   +V    G L I   ++ ++ M GEA     G+
Sbjct: 230 VHSPSTVVFKYGNL-IMQEEDGNIIMQGEATFVMRGE 265


>gi|297621677|ref|YP_003709814.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044]
 gi|297376978|gb|ADI38808.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044]
          Length = 284

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 25/285 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F+K  G GN  ++ID R        +  A +          D ++L+     A  D  
Sbjct: 16  IPFSKYTGCGNDFILIDNRNQVYPSEESDLAEHLCDRQFGVGADGVILLERSDRA--DFV 73

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGE 122
           +RI N DG+E + CGNG+RC+ +FL         FT E +        + DGS+SV M  
Sbjct: 74  MRIFNPDGTEAEMCGNGIRCLGKFLQELGIEGTRFTIEVMGKKYPLSLHDDGSVSVSMQP 133

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  I L+        D    G            V             DL       
Sbjct: 134 APEISWDIELSIGRKTFHVDFLDTG------------VPHATLSVEKLSAFDLDAIGPK- 180

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241
                 K       V++     +    + +RT+ERGV   T ACG+ A A  + +    +
Sbjct: 181 -IRYHEKFMPQGTNVDVYHIDESDPSLIYIRTYERGVERETMACGTGATACAIIAWTKEQ 239

Query: 242 TNRAVSVKMLGGG-LLIEWHDN----NHVFMTGEAKKEWEGKLDI 281
               + +++  G  L  +   +    + + M G A+  + G   I
Sbjct: 240 IANPIRIQVASGDILEFKISGSLGRIDQIVMKGPAEFIFRGNFSI 284


>gi|149277233|ref|ZP_01883375.1| diaminopimelate epimerase [Pedobacter sp. BAL39]
 gi|149232110|gb|EDM37487.1| diaminopimelate epimerase [Pedobacter sp. BAL39]
          Length = 270

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 110/286 (38%), Gaps = 37/286 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      T +       +       D +ML+     A  D  
Sbjct: 12  IHFYKYQGAGNDFILIDNRDLSFKYTGNNAVLQLCNRRFGIGADGLMLLQ--DHADYDFE 69

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG RC+V F        S T F  + G   AK +  G+       
Sbjct: 70  MLYFNADGKLGSMCGNGGRCIVAFAKHLGIIDSETNFLAVDGPHYAKISDAGNWVDLQM- 128

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                         D +  D               +V++ G+PH +  V +         
Sbjct: 129 -----------IDIDHIGND------------GEAYVLNTGSPHYVAQVNNLETLDVYHE 165

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
             ++        EG+N++       + L +RT+ERGV   T ACG+   A  ++      
Sbjct: 166 GHSIRNNETYKQEGINVNFVEDLG-DHLFVRTFERGVEDETYACGTGVTAVALSMAQHKG 224

Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
            N  +   VK+LGG L I +  N     +VF+ G A++ +EG + I
Sbjct: 225 QNGHIETPVKVLGGDLRIAFDYNGSQFRNVFLCGPAEQVFEGNVSI 270


>gi|124516340|gb|EAY57848.1| Diaminopimelate epimerase [Leptospirillum rubarum]
          Length = 290

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 17/292 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65
           DF K  G+GN  +V  M      +T + I  +         D I+L+    +      +R
Sbjct: 6   DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60

Query: 66  IINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSISV 118
           I N DGSE +  GNG+R      +       + F  +T+ G++ A+      NR   + V
Sbjct: 61  IFNPDGSEAEKSGNGLRIFAKFLYEYGYATNRLFRIQTLGGMVTAEVYPDASNRVDRVKV 120

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG+  +D   + LA     +  +   + P           +S+GNPH +FF E +L   
Sbjct: 121 DMGKATVDPVSVGLANREKPLVEELLELAP---DLRLKGTAISVGNPHFVFFRE-ELDEK 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +  +G  +  HP+F + +N  + RVT    +++R WERG G T A GS++CA+   S  
Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           L K    V V+M GG L IE      + M G   +   G         +   
Sbjct: 237 LGKVRSPVRVRMPGGTLAIEVSPEQEIRMEGPVSEVMSGDFSPDLLALLDSA 288


>gi|326794950|ref|YP_004312770.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
 gi|326545714|gb|ADZ90934.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
          Length = 276

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 12/277 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+K   +GN  +VID +     ++   I A+         D  +L    +  S D  +
Sbjct: 1   MKFSKYHALGNDYIVIDPKNLSGELSETDIRAICNRHFGVGSDG-ILCGPNESDSCDFSL 59

Query: 65  RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +I N D SE +  GNG+R      +  S +    FT ET  G++ +   +DG        
Sbjct: 60  KIFNPDASEAEKSGNGLRIFSRYLWDQSLVSYDEFTIETKGGVVNSIVGKDGLTVSVGMG 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +      + ++ +               ++ ++GNPH +  ++ D+       
Sbjct: 120 ------KVRFTHESN-LESEPIPEIIKIKNREFTYYLANVGNPHCVILLD-DVTPSLAKE 171

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G+++     F    N+   +V    S+ +  WERG G T A GS++ A+      L   
Sbjct: 172 YGSIIENDTRFLNRTNVQFVKVIDKSSIQIEIWERGAGYTLASGSSSTAAASVVHALGLC 231

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              + V M GG + IE        MTG  +K  EG++
Sbjct: 232 KSTIDVHMPGGVIGIELDSAFFATMTGAVRKICEGEI 268


>gi|311087957|gb|ADP68036.1| diaminopimelate epimerase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 261

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 128/267 (47%), Gaps = 10/267 (3%)

Query: 19  LVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77
           +VI+    +  +TS  I  LS       FDQ++L+        D   RI N +G+EV+ C
Sbjct: 1   MVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHYRIFNANGNEVEQC 60

Query: 78  GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR--DGSISVDMGEPILDWKLIPLARS 135
           GNG RC   FL  +                       +  I V+M EP   +  +    S
Sbjct: 61  GNGARCFGLFLLLKGLTNKKKISISTKKKPLTIEFLTENMIKVNMNEPDFKFYNL---SS 117

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
              +  + F I  +N   + N  +VS+GNPH I  V+  + +  +   GN + K+P+F E
Sbjct: 118 LQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SIKNAPVNIIGNNIEKNPIFPE 174

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255
           GVN+S   + + + + LR +ER VG T ACGSAACA+V         +  V V++LGG L
Sbjct: 175 GVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLLSDTVHVELLGGKL 234

Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           +I W      ++M G AK  ++G + I
Sbjct: 235 IIIWKGFGTPLYMVGPAKHVYDGYIYI 261


>gi|291087473|ref|ZP_06346567.2| diaminopimelate epimerase [Clostridium sp. M62/1]
 gi|291074770|gb|EFE12134.1| diaminopimelate epimerase [Clostridium sp. M62/1]
          Length = 278

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/266 (24%), Positives = 106/266 (39%), Gaps = 14/266 (5%)

Query: 15  GNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73
           GN  LV D       +  + +  L         D I+            +++I N DGSE
Sbjct: 2   GNDYLVFDPNKNEMKLGEEQVKMLCDRNFGIGSDGIL--EGPILDGEQMYVKIYNPDGSE 59

Query: 74  VQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
               GNGM    R+        + K    T      +    E     + + MG+P     
Sbjct: 60  APKSGNGMGIFARYLRDAGYVQKTKVSWMTLGGPVTVYYLNEEGT-RVKISMGKPTFWSD 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IP+     +M       G + ++       +S+GNPH + ++ +++    +   G    
Sbjct: 119 EIPVTGERREMVNQTMVFGKIPYIT----TCLSIGNPHCVIWM-NEISKELVCRIGEHSE 173

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
             P F E VN  +  V    ++ +  +ERG G T A GS ACA+  A+  L   +R + V
Sbjct: 174 NAPCFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAANRLGLADRNMYV 233

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274
            M GG L +E  ++  V+MTGE    
Sbjct: 234 HMPGGILEVEIKEDGVVYMTGEVGYI 259


>gi|329939970|ref|ZP_08289252.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045]
 gi|329300796|gb|EGG44692.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045]
          Length = 289

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 122/308 (39%), Gaps = 39/308 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M +  + F K  G  N  +++       ++ + A+ AL         D ++ +       
Sbjct: 1   MSTR-IAFLKGHGTQNDFVIVPDPENALDLPAAAVAALCDRRAGIGGDGLLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK 109
                 A  + F+   N DGS  + CGNG+R   R+L      +       T  G+  A 
Sbjct: 60  EAREMAAEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQRAGHVEAGDLAIATRGGVKRAH 119

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++DG ++V MG   L    + ++                          V MGNPHA+ 
Sbjct: 120 LDKDGDVTVGMGRARLPEGEVTVSVDGR----------------TWPARNVDMGNPHAVA 163

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FV+ DL H         +A    + +GVN+          + +R  ERG G T +CG+ A
Sbjct: 164 FVD-DLAHAGELLAPPPVAPAGTYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222

Query: 230 CASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      +  V       +V + GG L+I  +    + MTG A    EG++D  
Sbjct: 223 CAVAVAAARRDGADPEVTGEASTYTVDVPGGRLMITEYPGGEIEMTGPAVIVAEGEID-- 280

Query: 283 TGKWIKKN 290
             +W++  
Sbjct: 281 -EEWLRAA 287


>gi|189499284|ref|YP_001958754.1| diaminopimelate epimerase [Chlorobium phaeobacteroides BS1]
 gi|189494725|gb|ACE03273.1| Diaminopimelate epimerase [Chlorobium phaeobacteroides BS1]
          Length = 256

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 28/277 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  +V+D       +    I AL         D  +L+   +  + D  +R  N 
Sbjct: 1   MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVEPSE--TYDFSMRYFNA 58

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DG     CGNG RC   F  +      + +F+       A       + + M EP     
Sbjct: 59  DGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTGVERVKLKMTEPDTFRD 118

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            I                    H    N   V+ G+PH I +  +        +   +  
Sbjct: 119 DI--------------------HANGLNCHFVNTGSPHTIIYTGELETFNVHDTGYAVRN 158

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH--KTNRA 245
            + +F EG N++  +VT  +SL +RT+ERGV   T ACG+ A A+ + S  L    +   
Sbjct: 159 NNSLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTSV 218

Query: 246 VSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                 G  L +E+ ++   VF++G AK  + G + +
Sbjct: 219 SVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSV 255


>gi|308271343|emb|CBX27951.1| Diaminopimelate epimerase [uncultured Desulfobacterium sp.]
          Length = 282

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 118/287 (41%), Gaps = 35/287 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R        + S      +   +   D  +LI +   A  D 
Sbjct: 11  IHFFKMSGSGNDFIIIDNRENLIEDKGLASFITKVCARRMSVGADGFILIENCDSA--DF 68

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMG 121
             +  N DGS  + CGNG RC   F       K   +F T  GI+ A+    G + V+M 
Sbjct: 69  KWQFFNSDGSRAEMCGNGARCAAMFACINKIAKPDMSFLTDAGIVHAQVTD-GRVKVNMM 127

Query: 122 EPILDWKL--IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +P        IPL +                         ++ G PH +   + D+   D
Sbjct: 128 DPTYCKYDYQIPLKK------------------GPITVSSLNTGVPHVVIITD-DIEGAD 168

Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237
           +   G  +  H      G N++     S  ++ +RT+ERGV   T ACG+ + AS + + 
Sbjct: 169 VDGTGREIRFHENYAPAGTNVNFISCVSNSTIHIRTYERGVEGETLACGTGSIASALVAA 228

Query: 238 CLHKTNRAVSVKMLG-GGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           C +K    + V     G L I +  +N     +++ G+A+  ++G+L
Sbjct: 229 CKYKVESPIDVVTRSKGVLTIHFKQDNGRFYDIYLEGDARVIYKGEL 275


>gi|152994714|ref|YP_001339549.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
 gi|150835638|gb|ABR69614.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
          Length = 282

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 125/278 (44%), Gaps = 10/278 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64
           +DF K   +GN  LV+      D   +  I  +         D ++ I  F     D  +
Sbjct: 1   MDFRKYHALGNVYLVVSPDEFPDEPAALIIKNICHKHYGVASDGVL-IGPFSSNVADFGL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121
           RI N D SE +  GNG+R   R  +    +K K FT ET  G++ A+ + +G  + V+MG
Sbjct: 60  RIFNPDASEAEKSGNGLRIFCRSLWDQGLVKDKPFTIETKGGVVRAQVSDNGQRVDVEMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     + IP+     ++  +  ++  +NH+       V++GNPH +   E         
Sbjct: 120 KVSFLSQDIPVWGEPREVLLENLNVMSLNHI----YSAVTIGNPHCVILAE-SPTEIMAK 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
            FG L+  HP F    N+   +V     + +  WERG G T A GS++CA+   +  L  
Sbjct: 175 EFGPLIETHPNFPNRTNVQFMQVIDRNHIVIEIWERGAGYTLASGSSSCAAAAVAYKLGL 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + ++ V M GG + IE  ++  V M+G       G +
Sbjct: 235 CDSSIKVMMPGGQIDIEISEDFRVSMSGGVTSVCHGSI 272


>gi|307128731|ref|YP_003880761.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI]
 gi|306483193|gb|ADM90063.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI]
          Length = 259

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 106/282 (37%), Gaps = 34/282 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K +  GN  ++I+       +    I  L   +     D ++LI   ++   D ++
Sbjct: 3   INFFKYQATGNDFIIINNIEKSFFLNEKIIKNLCNRNLGIGADGLILIE--KNKKYDFYM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           +  N DG E   CGNG RC V F                       +     S+      
Sbjct: 61  KYYNSDGKEGSMCGNGGRCSVHFAKKIGILNKTNTLFKS------IDGYHYASIKQNIVS 114

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L+ K + L +                         ++ G+PH I F E            
Sbjct: 115 LNMKNVELVK------------------VYPEHIYINTGSPHHILFKEKINNINVYKEGK 156

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK-T 242
            +         GVN++  +  +   L++RT+ERGV   T +CG+   AS +A+  + K  
Sbjct: 157 KIRFNQKYIKTGVNVNFVK-INKNILNVRTYERGVENETFSCGTGVTASAIAAYHIKKIL 215

Query: 243 NRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLD 280
              + VK LGG L +++         +F+ GE    ++G ++
Sbjct: 216 YNKIIVKTLGGTLQVKFEKLLKSYKKIFLKGEVNFVYKGIIN 257


>gi|297191643|ref|ZP_06909041.1| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151012|gb|EDY65485.2| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 303

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 109/300 (36%), Gaps = 24/300 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--- 57
           Q+S + F K  G  N  +++        + +  +  L         D ++ +        
Sbjct: 8   QTSPLPFLKGHGTENDFVIVPDPDNALELPASTVARLCDRRAGIGGDGLLRVVRSAAHPE 67

Query: 58  -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
                   + F+   N DGS  + CGNG+R   R+L       +          + K + 
Sbjct: 68  AEHMAGEAEWFMDYRNADGSVAEMCGNGVRVFARYLQHAGHIDAGDVSVATRGGIKKAHL 127

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             ++             I ++     +  D   +             V+MGNPHA+ FVE
Sbjct: 128 AKAVPGSGVAG-----DITVSMGRAVLPEDGVTVSV--GGRSWPARNVNMGNPHAVAFVE 180

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            +L H              ++ +GVN+          + +R  ERG G T +CG+ ACA 
Sbjct: 181 -ELDHAGDLLTVPPFTPASVYPDGVNVEFVVDRGEHHVAMRVHERGSGETRSCGTGACAV 239

Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            VA+      + AV       +V + GG L I    +  + MTG A    EG +D    +
Sbjct: 240 AVAAARRDGLDPAVTGAPVTYTVDLPGGRLRITERPDGEIEMTGPAVIVAEGMIDPVLLE 299


>gi|325284923|ref|YP_004260713.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489]
 gi|324320377|gb|ADY27842.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489]
          Length = 257

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 39/283 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R        +  IN L         D ++L+ +  D  +D  
Sbjct: 3   ITFYKYQGTGNDFVMIDNRSLSFPKQDTKLINTLCDRKFGVGADGLILLEN--DEDLDFK 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG+E   CGNG RC+V F     + ++  TF  + G+  A    D         
Sbjct: 61  MVYYNADGNESTMCGNGGRCLVAFANFLGVIKEKTTFNAVDGLHNATIKGD--------- 111

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                  I         N   +  G+PH +  V+ ++  +D+ +
Sbjct: 112 -----------------IVSLQMIDVAEVKEKENYSFLDTGSPHHVQLVD-NVNGFDVFT 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            G  +        G N++     + +   +RT+ERGV   T +CG+   A  +A      
Sbjct: 154 EGKKIRYGLYGEAGSNVNFV-TKNAKGYTVRTYERGVEDETLSCGTGVTAVALAMHKSGN 212

Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
           TN   + +K++GG L I +   +    +V++TGEAK+ ++G++
Sbjct: 213 TNLTTIPIKVMGGDLEISFTAKDGSYKNVYLTGEAKQVFKGEI 255


>gi|257452327|ref|ZP_05617626.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
 gi|317058870|ref|ZP_07923355.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
 gi|313684546|gb|EFS21381.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R]
          Length = 267

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 15/279 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME  GN  ++ D R     +I + A            D I+   +   A  D  +
Sbjct: 1   MKFWKMEAAGNDFVIFDGREIEIKDINALAKKLCDRHFGVGADGILFCQESDTA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG+RC+ RF+       ++    ET  G+         +  +    
Sbjct: 59  NYYNSDGSRGEMCGNGIRCLSRFIYENNIVDKRKMNIETDNGVKEVVLTVGENEHI---- 114

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  + +     + ++              + + V++G PH    V++ +   +L  
Sbjct: 115 -----SQVKVEMGKAEWEKGFQEETLEIEGRSFDFYRVTVGVPHIAILVDEFMKDEELNY 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G +L KHP F    N++  +V + + + ++TWERG G T  C +   +  V    L K 
Sbjct: 170 WGAILEKHPSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQRLQKI 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              V     GG + ++   ++ V + G+A   + G +D+
Sbjct: 230 KGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267


>gi|240144179|ref|ZP_04742780.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
 gi|257203783|gb|EEV02068.1| diaminopimelate epimerase [Roseburia intestinalis L1-82]
          Length = 281

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 14/279 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  L+ D +     +    I  L   +     D I+             +RI N
Sbjct: 8   KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65

Query: 69  CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK--ENRDGSISVDMGEPI 124
            DGSE +  GNG+R   R+      +K + +   T  G  +    ++    + VDMG  +
Sbjct: 66  PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGNCMRVDMGYAV 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + IP      ++  +             N   VSMGNP+ +  +E  +        G
Sbjct: 126 FEAEQIPALGFEGEVVGESIFFCDN----FYNATCVSMGNPNCVIMLER-VDREKALHLG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+  AS  L     
Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           AV+V M GG L IE+  +  +FMTG     + GK+ +  
Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITVAE 277


>gi|312890764|ref|ZP_07750295.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603]
 gi|311296757|gb|EFQ73895.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603]
          Length = 264

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 37/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  +++D R    N      I  +         D +M +        D  
Sbjct: 3   IQFYKYQGAGNDFILVDNRKNGVNHHNPAWIAQICDRRFGVGGDGMMFLQ--DKEGYDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG RC+V F        S T F+ + G   AK             
Sbjct: 61  MIYYNADGQPSSMCGNGGRCIVAFAKYLGIIDSETKFQAVDGEHYAKI------------ 108

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                     +   D +      +  +N       +V++ G+PH +  VED  +      
Sbjct: 109 ----------SAEGDWVSLQMIDVAQINRD--GEAYVLNTGSPHYVKLVEDLKHKNVYQE 156

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +        +G+N++     +     +RT+ERGV   T ACG+   A  +A    ++
Sbjct: 157 GHAIRNNATYRKKGININFVEPMAEGYF-VRTFERGVEDETYACGTGVTAVALAMAQHNQ 215

Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
            +  ++  VK+LGG L I +  +     ++F+ G AK  +EGK+
Sbjct: 216 QSGHITTPVKVLGGDLNIRFDYDGERFTNIFLEGPAKLVFEGKI 259


>gi|239917255|ref|YP_002956813.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
 gi|281414267|ref|ZP_06246009.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
 gi|239838462|gb|ACS30259.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665]
          Length = 317

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 108/307 (35%), Gaps = 37/307 (12%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF----- 55
            +  V F K  G GN  ++I     +  + +  +  L+        D ++          
Sbjct: 17  SAPRVPFTKGHGTGNDFVLIADPDGNTQLDAQHVARLADRHRGIGADGVIRAVRSARLPE 76

Query: 56  ------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRG 104
                 +    + F+   N DGS  + CGNG+R  V FL  +        ++ T  T  G
Sbjct: 77  GEALLAEHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLVEKGLVDLAPGQAITIGTRAG 136

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +        G          LD +L   A S   +               R    VSMGN
Sbjct: 137 VKAVTRLEHGYAIDMGPWCYLDPELAEEAASDSMVR-------AHGLTDPRPALSVSMGN 189

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERG 218
           PH +  +        L   G      P    G N+                + +R  ERG
Sbjct: 190 PHTVVPLASFADLQGLD-LGRAPEVDPAPPHGTNVEFVAAHEPLVREGVGRVRMRVHERG 248

Query: 219 VGLTAACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAK 272
           VG T +CG+ ACA  VA       +   +  V++ GG L ++         HV ++G A+
Sbjct: 249 VGETQSCGTGACAVAVAMRAWAGDQGTDSWLVEVPGGVLAVDVVPGPEGAEHVVLSGPAE 308

Query: 273 KEWEGKL 279
             ++G+L
Sbjct: 309 LVFDGEL 315


>gi|291538698|emb|CBL11809.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4]
          Length = 281

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 14/279 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  L+ D +     +    I  L   +     D I+             +RI N
Sbjct: 8   KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65

Query: 69  CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK--ENRDGSISVDMGEPI 124
            DGSE +  GNG+R   R+      +K + +   T  G  +    ++    + VDMG  +
Sbjct: 66  PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + IP      ++  +             N   VSMGNP+ +  +E  +        G
Sbjct: 126 FEAEQIPALGFEGEVVGESIFFCDN----FYNATCVSMGNPNCVIMLER-VDREKALHLG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+  AS  L     
Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           AV+V M GG L IE+  +  +FMTG     + GK+ +  
Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITVAE 277


>gi|331087030|ref|ZP_08336105.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409480|gb|EGG88923.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 292

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 16/286 (5%)

Query: 5   MVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           M++    K  G+GN   V D       +T + +  +         D I+           
Sbjct: 1   MMNIVLEKYHGLGNDYFVFDPNKNELKLTKENVRMICDRNFGMGSDGIL--EGPIFQEDK 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            ++++ N DGSE +  GNG R   ++      +++K  TF T+ G +      +    + 
Sbjct: 59  IYVKVWNPDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLR 118

Query: 120 MGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                       IP+     ++  +    G      L     VS+GNPH +  +  ++  
Sbjct: 119 ASAGKLSFWSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISK 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             +   G+       F   +N  + +V   E++ +  +ERGVG T A GS ACA+   + 
Sbjct: 174 PLVCKIGDYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAY 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            L  TN  V+V M GG L +E  D+  VF TGE      GK+ + +
Sbjct: 234 KLGMTNPGVTVHMPGGKLQVEIQDDWEVFATGEVFYI--GKISLSS 277


>gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens
            W5455]
 gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens
            W5455]
          Length = 1364

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 13/287 (4%)

Query: 2    QSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
            +   V F KM   GN+ + +D  R       S ++       +   D ++++   +    
Sbjct: 1082 RKRPVRFVKMHCGGNEYIYVDAIRQSVAEPASLSVALCGRRRSVGGDGLVIVAPPR-GKA 1140

Query: 61   DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDG 114
            DA + + + DG+  +  GN +R V ++L  +  +K+K  + ET  G+       ++    
Sbjct: 1141 DARMTLYDADGTRARIGGNALRGVGKYLYEKLDVKKKDLSIETDDGVKALRLYDRDGEIY 1200

Query: 115  SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            S+   +G P  D   +P+  + D       +       F      +S+G+P  +   + D
Sbjct: 1201 SVEALIGRPDFDPARVPVTLNADGRPVVSQYYSC--GGFDDQITCLSLGDPQCVILTD-D 1257

Query: 175  LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +L   G L+ +  +F EG N+S   V    +L +RTWER +G T +CG++ CA+ V
Sbjct: 1258 CDGAELNVEGPLMERAEIFPEGTNVSCVSVADRHTLRVRTWERRIGETMSCGTSVCAAAV 1317

Query: 235  ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +  L   +   +SVK  GG L++       +F+ G    ++EG ++
Sbjct: 1318 VAARLGLVDEGEISVKTAGGLLVVRLAPEG-IFLIGGVDCDFEGVIE 1363


>gi|289425147|ref|ZP_06426924.1| diaminopimelate epimerase [Propionibacterium acnes SK187]
 gi|289427212|ref|ZP_06428928.1| diaminopimelate epimerase [Propionibacterium acnes J165]
 gi|295130580|ref|YP_003581243.1| diaminopimelate epimerase [Propionibacterium acnes SK137]
 gi|289154125|gb|EFD02813.1| diaminopimelate epimerase [Propionibacterium acnes SK187]
 gi|289159681|gb|EFD07869.1| diaminopimelate epimerase [Propionibacterium acnes J165]
 gi|291376870|gb|ADE00725.1| diaminopimelate epimerase [Propionibacterium acnes SK137]
 gi|313772149|gb|EFS38115.1| diaminopimelate epimerase [Propionibacterium acnes HL074PA1]
 gi|313792155|gb|EFS40256.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA1]
 gi|313801892|gb|EFS43126.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA2]
 gi|313807505|gb|EFS45992.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA2]
 gi|313810013|gb|EFS47734.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA1]
 gi|313818547|gb|EFS56261.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA2]
 gi|313820314|gb|EFS58028.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA1]
 gi|313822879|gb|EFS60593.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA2]
 gi|313825189|gb|EFS62903.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA1]
 gi|313830341|gb|EFS68055.1| diaminopimelate epimerase [Propionibacterium acnes HL007PA1]
 gi|313833715|gb|EFS71429.1| diaminopimelate epimerase [Propionibacterium acnes HL056PA1]
 gi|313838718|gb|EFS76432.1| diaminopimelate epimerase [Propionibacterium acnes HL086PA1]
 gi|314925201|gb|EFS89032.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA3]
 gi|314960016|gb|EFT04118.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA2]
 gi|314962813|gb|EFT06913.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA1]
 gi|314973346|gb|EFT17442.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA1]
 gi|314976023|gb|EFT20118.1| diaminopimelate epimerase [Propionibacterium acnes HL045PA1]
 gi|314978438|gb|EFT22532.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA2]
 gi|314983955|gb|EFT28047.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA1]
 gi|314988139|gb|EFT32230.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA2]
 gi|314989943|gb|EFT34034.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA3]
 gi|315078030|gb|EFT50081.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA2]
 gi|315084327|gb|EFT56303.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA2]
 gi|315085669|gb|EFT57645.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA3]
 gi|315088909|gb|EFT60885.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA1]
 gi|315096261|gb|EFT68237.1| diaminopimelate epimerase [Propionibacterium acnes HL038PA1]
 gi|327326173|gb|EGE67963.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA2]
 gi|327331952|gb|EGE73689.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA3]
 gi|327443153|gb|EGE89807.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA2]
 gi|327445939|gb|EGE92593.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA2]
 gi|327448082|gb|EGE94736.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA1]
 gi|327453127|gb|EGE99781.1| diaminopimelate epimerase [Propionibacterium acnes HL092PA1]
 gi|328753484|gb|EGF67100.1| diaminopimelate epimerase [Propionibacterium acnes HL020PA1]
 gi|328760605|gb|EGF74172.1| diaminopimelate epimerase [Propionibacterium acnes HL099PA1]
 gi|332675420|gb|AEE72236.1| diaminopimelate epimerase [Propionibacterium acnes 266]
          Length = 273

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 31/292 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+   T RM        T  G+   + + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +SV MG   ++   +            +    P   + + NP  V + +   +  +  + 
Sbjct: 118 VSVTMGTVRVESDEV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCDINLN- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                            F +GVN+         ++ +R +ERG G T +CG+   A    
Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAAT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284
                      +V++ GG +++    + D     +TG A     GK+++  G
Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273


>gi|257468500|ref|ZP_05632594.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
 gi|317062759|ref|ZP_07927244.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
 gi|313688435|gb|EFS25270.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185]
          Length = 278

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/283 (27%), Positives = 129/283 (45%), Gaps = 16/283 (5%)

Query: 6   VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM+  GN  ++++       N    A            D +M   +   A  D  +
Sbjct: 1   MKFSKMQAAGNDFILMNGMIEKSSNWNETAKKVCDRHFGIGADGLMFCEESLKA--DIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR-----DGSIS 117
              N DGS  + CGNG+RC  +F+     +K+  F+ ET  GI   K +         + 
Sbjct: 59  NYYNSDGSRGEMCGNGIRCFAKFVYDNEIVKKNEFSVETDAGIKYIKLDIGALGAIEYLK 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           VDM +     K +P     + +  +   IG    +F      V MG PH   FVE D   
Sbjct: 119 VDMEKVDFKGKNVPCTIEKENILEEEIMIGNKKVIFSS----VLMGVPHTTIFVE-DFDE 173

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
           YD+   G+L+ K  +F E  N++ A+VT+ +++ ++TWERG G T  CG+  CA+   + 
Sbjct: 174 YDVNETGSLMEKADIFPEKTNVNFAKVTADDTIMIKTWERGAGRTLGCGTGCCATAALAH 233

Query: 238 CLHKTNRAVSVKM-LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            L K  +     +  GG L IE  ++  + M+G+A+    G+ 
Sbjct: 234 KLGKIKKDKIKLLAEGGELFIEIGEDYEITMSGKAETICHGEF 276


>gi|257465882|ref|ZP_05630193.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917038|ref|ZP_07913278.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690913|gb|EFS27748.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 267

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 15/279 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KME  GN  ++ D R        D    L         D I+     + +  D  +
Sbjct: 1   MKFWKMEAAGNDFVIFDGRNIKIEDIQDLAKKLCDRHFGVGADGILFCE--ESSQADIKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG+RC+ RF+           + ET  G+         +  +    
Sbjct: 59  NYYNSDGSRGEMCGNGIRCLSRFIYENKIVDKLKMSIETDNGVKEVVLTVVENEHI---- 114

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  + +       +++             + + V++G PH    V++ +   +L  
Sbjct: 115 -----SQVKVEMGKAIWEKEFQKEILEIEGRSFDFYRVTVGVPHIAILVDEFMKDEELNY 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           +G+LL KH  F    N++  +V + + + ++TWERG G T  C +   +  V    L K 
Sbjct: 170 WGSLLEKHSSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQRLQKI 229

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              V     GG + ++   ++ V + G+A   + G +D+
Sbjct: 230 KGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267


>gi|257877303|ref|ZP_05656956.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20]
 gi|257811469|gb|EEV40289.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20]
          Length = 277

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + D 
Sbjct: 3   IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   +    +  T ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179
                    P   +FD+   +      V+++ L +P     G PHA+       +     
Sbjct: 122 P--------PTVTTFDQAYPNPMV-SFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV-VASG 237
           LA     +    +F +G N++         L +RT+ERGV   T ACG+ + A+  V + 
Sbjct: 168 LAELAKEIRYWEVFPKGANVNFYEEDDKGELIVRTYERGVEGFTYACGTGSGATAYVVTK 227

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +    V + +LGG L +E   D   + + G+A    EG +
Sbjct: 228 RHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270


>gi|327330243|gb|EGE71992.1| diaminopimelate epimerase [Propionibacterium acnes HL097PA1]
          Length = 273

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 31/292 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+   T RM        T  G+   + + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +SV MG   ++   +            +    P   + + NP  V + +   +  +  + 
Sbjct: 118 VSVTMGTVRVESDKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCDINLN- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                            F +GVN+         ++ +R +ERG G T +CG+   A    
Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAAT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284
                      +V++ GG +++    + D     +TG A     GK+++  G
Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273


>gi|257867193|ref|ZP_05646846.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30]
 gi|257873528|ref|ZP_05653181.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10]
 gi|257801249|gb|EEV30179.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30]
 gi|257807692|gb|EEV36514.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10]
          Length = 277

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + D 
Sbjct: 3   IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   +    +  T ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179
                    P   +FD+   +      V+++ L +P     G PHA+       +     
Sbjct: 122 P--------PTVTTFDQAYPNPMV-SFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV-VASG 237
           LA     +    +F +G N++         L +RT+ERGV   T ACG+ + A+  V + 
Sbjct: 168 LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVVTK 227

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +    V + +LGG L +E   D   + + G+A    EG +
Sbjct: 228 RHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270


>gi|325568637|ref|ZP_08144930.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755]
 gi|325157675|gb|EGC69831.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755]
          Length = 277

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + + KM+G GN  +VID R     H+ ++  A        +   D +M + DF   + D 
Sbjct: 3   IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121
            +R  N DG+E + CGNG RC+ R+   +    +  T ET+ G + A         V + 
Sbjct: 62  RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVILN 121

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179
                    P   +FD+   +      V+++ L +P     G PHA+       +     
Sbjct: 122 P--------PTVTTFDQAYPNPMV-SFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV-VASG 237
           LA     +    +F +G N++         L +RT+ERGV   T ACG+ + A+  V + 
Sbjct: 168 LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVVTK 227

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
              +    V + +LGG L +E   D   + + G+A    EG +
Sbjct: 228 RHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270


>gi|251772478|gb|EES53045.1| Diaminopimelate epimerase [Leptospirillum ferrodiazotrophum]
          Length = 285

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 16/281 (5%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65
           DF K  G+GN  +V+ + G    +T   +  L   +     D I+L+           +R
Sbjct: 4   DFVKGHGLGNDYIVM-VEGASPKMTEANVRLLCDRNYGIGSDGILLLGQPTPP---FGLR 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSISV 118
           I N DGSE +  GNG+R   +FL      K  +F         +       + R  ++ V
Sbjct: 60  IFNPDGSEAEKSGNGLRIFSKFLYEYGYAKELSFPIDTKGGRVRSTVTVGADGRVTAVKV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           DMG    +   + +    + M  +   +     +       VS+GNPH +FFVE  +   
Sbjct: 120 DMGRYSFNPSDVGILGRSNPMIEEVLRLEDGTEI---RGSAVSVGNPHFVFFVEK-IDED 175

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            +   G ++  + +F + +N  + RV     +++R WERG G T A GS++CA+   +  
Sbjct: 176 FIHEKGRMIEHNKVFPKRINTQMVRVIGRNEIEIRIWERGAGYTLASGSSSCAAATIAVH 235

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L +    V V M GG L+IE  +N+ + M G  ++   G L
Sbjct: 236 LGRVQSPVRVHMPGGILMIEVDENHEIRMEGPVEEVMTGHL 276


>gi|289706445|ref|ZP_06502803.1| diaminopimelate epimerase [Micrococcus luteus SK58]
 gi|289556940|gb|EFD50273.1| diaminopimelate epimerase [Micrococcus luteus SK58]
          Length = 315

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 107/305 (35%), Gaps = 37/305 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-------- 56
           V F K  G GN  +++     + ++ +  +  L+        D ++     +        
Sbjct: 19  VPFTKGHGTGNDFVLLADPDGNVHLEAAQVAVLADRHRGIGGDGVIRAVPSRHVEEGRAL 78

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108
                  + F+   N DGS  + CGNG+R  V FL  +        +S T  T  G+   
Sbjct: 79  LAAHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVDLAPGESITIGTRAGVKTV 138

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                G          LD +L   A S   +               R    VSMGNPH +
Sbjct: 139 SRLAHGYAIDMGPWSYLDPELAEEAASDAMV-------LAAGLADPRPALSVSMGNPHTV 191

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +        L          P  S G N+                  +R  ERGVG T
Sbjct: 192 VPLASFEDLEGLD-LTRAPEVDPAPSHGTNVEFVAAHEPLVREGVGRARMRVHERGVGET 250

Query: 223 AACGSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWE 276
            +CG+ ACA  VA           +  V++ GG L +++        HV + G A+  ++
Sbjct: 251 QSCGTGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVVLAGPAELVFD 310

Query: 277 GKLDI 281
           G+L +
Sbjct: 311 GELTV 315


>gi|284032598|ref|YP_003382529.1| diaminopimelate epimerase [Kribbella flavida DSM 17836]
 gi|283811891|gb|ADB33730.1| diaminopimelate epimerase [Kribbella flavida DSM 17836]
          Length = 299

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 33/303 (10%)

Query: 4   SMVDF--AKMEGIGNKILVIDMRGCHD--NITSDAINALSTDD-NTHFDQIM-LIHDFQ- 56
           +M  F   K  G  N  +++         ++    +  L         D ++ +I   + 
Sbjct: 9   AMSTFPWLKGHGTENDFVLLPDPDGSVHGDLDPALVRFLCDRYAGIGADGVLRVIEGSRQ 68

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111
              +   + F+   N DGS  Q CGNG+R  VR+L        K     T  G+     N
Sbjct: 69  TYVEDGGEWFMDYRNADGSTAQMCGNGIRVFVRYLVDEGLTTAKPVRIGTRAGVKEVVLN 128

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            DG+I+ D+GEP        L      +     H  P  H        V MGNPHA+ FV
Sbjct: 129 DDGTITADLGEPA-------LPGPAGIVVEADGHQWPATH--------VDMGNPHAVVFV 173

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + DL            +    F  GVN+         ++ +R  ERG G T +CG+  CA
Sbjct: 174 D-DLREPGPLVDPPGWSPESAFPHGVNVEFVTRQGPHAVTMRVHERGAGETRSCGTGTCA 232

Query: 232 SVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
             VAS    +  R V+  V +LGG + + W  +NHV +TG A     G+ D     W+  
Sbjct: 233 VTVASARAARQERPVTYRVGVLGGEVSVTWRADNHVELTGPAVVHARGEFD---RAWLPS 289

Query: 290 NED 292
             +
Sbjct: 290 GRE 292


>gi|303248958|ref|ZP_07335205.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ]
 gi|302489681|gb|EFL49617.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ]
          Length = 288

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 105/285 (36%), Gaps = 17/285 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61
           V F KM+G GN  + +D R    +     D +  +         D ++ + H  + A + 
Sbjct: 11  VPFFKMQGCGNDFVCVDNRELGYDPEAMPDIVVPVCRKAFGVGADGMIFLDHAPEGAGLA 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
                 N DGS  + CGNG RC  R         +          +              
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPASHVFGTDAGPI----------EAAV 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +P  +   + L    D        +             V+ G PHA+ FV+ +L   D+ 
Sbjct: 121 DPDSNLVTVRLTSPKDLRLNIDMEMEVEGRHHQMTLHSVNTGVPHAVAFVD-NLETVDVW 179

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  +  H  F   G N++   VT    L LRT+ERGV   T ACG+ A AS V +  L
Sbjct: 180 QLGRTVRHHEFFNPAGTNMNFVAVTGKGQLSLRTYERGVEDETYACGTGAVASAVIAKEL 239

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             T    ++   GG  L     +   ++ G A+  + G    ++ 
Sbjct: 240 GLTGEETAITTTGGEELGVILRDGKTYLRGAAELVFRGGFYPQSL 284


>gi|315080655|gb|EFT52631.1| diaminopimelate epimerase [Propionibacterium acnes HL078PA1]
          Length = 273

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 31/292 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQPLRSGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+   T RM        T  G+   + + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +SV MG   ++   +            +    P   + + NP  V + +   +  +  + 
Sbjct: 118 VSVTMGTVRVESGEV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCDINLN- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                            F +GVN+         ++ +R +ERG G T +CG+   A    
Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAAT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284
                      +V++ GG +++    + D     +TG A     GK+++  G
Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273


>gi|326798527|ref|YP_004316346.1| diaminopimelate epimerase [Sphingobacterium sp. 21]
 gi|326549291|gb|ADZ77676.1| Diaminopimelate epimerase [Sphingobacterium sp. 21]
          Length = 263

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R    +   T+              D +ML+   Q A  D  
Sbjct: 1   MKFFKYQGAGNDFVLIDNRDQQFDTKDTALVAQLCDRRFGIGADGLMLLQ--QRAGYDFE 58

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRD-GSISVDMG 121
           +   N DG+    CGNG RC+V F       +  T F  + G   A  N     +S+ M 
Sbjct: 59  MVYYNADGNPSSMCGNGGRCIVSFAKHLGIIEKSTRFLAVDGEHEATINDTADWVSLKMI 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           +     K                           + FV++ G+PH +  V D       A
Sbjct: 119 DVEHIEKD-------------------------GDDFVLNTGSPHYVKEVVDLKNLDVFA 153

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS--GC 238
           +   +         G+N++     +     +RT+ERGV   T ACG+   A  +A     
Sbjct: 154 AGRAIRYNATYKQAGINVNFVEAVNDG-YQVRTYERGVEDETLACGTGVTAVALAMAWHH 212

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEG 277
                 +  +K +GG L I +    +     +++ G AK  +EG
Sbjct: 213 NRLGTYSTPIKAMGGDLNIRFTYLGNGVFKDIYLEGPAKLVFEG 256


>gi|258647859|ref|ZP_05735328.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259]
 gi|260851686|gb|EEX71555.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259]
          Length = 284

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 124/281 (44%), Gaps = 7/281 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  + ID       +    AI               +I   ++ S    +
Sbjct: 5   IEFTKMHGAGNDYIYIDTMRFPIAHPEKLAIAWSDRHKGIGG--DGIILIGKNESGYFTM 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSE + CGNG+RCV ++L        K    +T+ G  +     D    V    
Sbjct: 63  RIFNNDGSEGKMCGNGIRCVGKYLYDNGITSEKELPIDTLSGTKLLHMTTDADNKVVEVT 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             +   ++         D                   VSMGNPH I F+   +  YD+ +
Sbjct: 123 VDMGEPILADKHQLATPDGSMKDGEVTIGHTNYRGTFVSMGNPHFINFING-VEEYDVQT 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  L +  +F E  N+  A +    S+ +R WERG G+T ACG+ ACA+ VA+    + 
Sbjct: 182 NGVRLEQAQIFPERCNIEFAEIRPDGSIRMRVWERGSGITMACGTGACATAVAAALTGRA 241

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282
            R  ++ M GG L I W++ +NH++MTG A   + G +++ 
Sbjct: 242 GRTSTIVMDGGQLTIVWNENDNHIYMTGPATTVFTGTIELP 282


>gi|256828459|ref|YP_003157187.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028]
 gi|256577635|gb|ACU88771.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028]
          Length = 279

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 99/278 (35%), Gaps = 22/278 (7%)

Query: 8   FAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F KM+G GN  +VID R      +++   A        +   D I+ +            
Sbjct: 11  FYKMQGSGNDFIVIDNRAKTISPEDMPRWAKTLCPHAFSIGADGIIFLEIDDSGQAATRW 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS  + CGNG RC            +          V               P 
Sbjct: 71  HFFNADGSRAEMCGNGSRCATLLAYMLGMAPAKHLMLTDAGTVH----------AQVFPE 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + L  + D        +              + G PHA+     D+   D+   G
Sbjct: 121 AGEVDVQLTPARDMALNFTLDLDDR----TFAAHFANTGVPHAVIVT-PDVKSIDVKGLG 175

Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
             +  H  F   G N +  +V S   L LRT+ERGV   T ACG+ A ASV  +  L   
Sbjct: 176 AKVRYHDHFAPAGTNANFIQVVSRGELLLRTYERGVESETYACGTGAAASVAVAHALGLC 235

Query: 243 NRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
                V   GG  L I  H ++ +F+ G+A+  ++G+ 
Sbjct: 236 ESKAKVTTSGGEVLEISVHGSD-IFLRGKAQLVYKGEF 272


>gi|320352653|ref|YP_004193992.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032]
 gi|320121155|gb|ADW16701.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032]
          Length = 279

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/286 (26%), Positives = 109/286 (38%), Gaps = 33/286 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ID R         ++    +     +   D + LI     A  D 
Sbjct: 8   IPFWKMSGAGNDFIIIDHRKPLIPQERMAEFARLVCRRKFSVGADGLFLIEPSTRA--DF 65

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             R  N DGSE + CGNG RCV RF     +      FET+ GI+ A             
Sbjct: 66  KWRFFNADGSEAEMCGNGARCVARFAYMHGIAAARMRFETLAGIVEATV----------- 114

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                                RF         L     V  G PHA+ FV+ D+   D+ 
Sbjct: 115 ------ADTTATIKMTSPHSFRFDRQIEVGGQLFMVHSVDTGVPHAVIFVD-DIDEVDMV 167

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
             G  L  HP+F   G N++    T      +RT+ERGV   T ACG+   A  + +   
Sbjct: 168 GLGRQLRHHPVFAPMGTNVNFVGRTGDG-FRIRTYERGVEDETMACGTGVVAGALIAAVK 226

Query: 240 HKTNRAVSVKMLGGG-LLIEWHDN-----NHVFMTGEAKKEWEGKL 279
              +  V++   GG  L +++        + V + G A   + G+L
Sbjct: 227 GYADSPVAMVTSGGIALTVQFSGKKGTDVDQVLLKGPAHLIYRGEL 272


>gi|116623686|ref|YP_825842.1| diaminopimelate epimerase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226848|gb|ABJ85557.1| diaminopimelate epimerase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 268

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 100/277 (36%), Gaps = 19/277 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K  G  N  L    R        +A  I           D  ML+    DA  +  
Sbjct: 3   IPFTKTHGAKNDFLFTWRRDVPPETDHEALAIAICDRHTGIGADGWMLVDPPADAEAEGT 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGE 122
           I++ N DGS  +  GNG RC   FL             T  G+   +      +      
Sbjct: 63  IQLYNSDGSIAEMSGNGTRCAAAFLIKHGMAAGVVRVRTGAGVKSMRVLERKGLLFQ--- 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                       +  + +              R+  ++ +GNP     VE   + +D  +
Sbjct: 120 ---------FEMNMGRAEIAEKRFELQVTGERRDVTLLWVGNPQCAVPVEH--FDFDWRT 168

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  + +HP F    N+S  R     ++D+R WERG G T + G+ +  +   +      
Sbjct: 169 LGAEIERHPHFPNRTNVSFVRAVDQHTIDVRFWERGAGETMSSGTGSTGAAAMAVARGLA 228

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  V V+   G + + +  +  +F+TG A+   EG+ 
Sbjct: 229 SSPVRVQTPAGAMDLRF--DGDIFLTGPAEIVAEGEF 263


>gi|294631821|ref|ZP_06710381.1| diaminopimelate epimerase [Streptomyces sp. e14]
 gi|292835154|gb|EFF93503.1| diaminopimelate epimerase [Streptomyces sp. e14]
          Length = 289

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 110/308 (35%), Gaps = 35/308 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55
           M S  + F K  G  N  +++       +++  A+ AL         D ++ +       
Sbjct: 1   MSSR-IAFLKGHGTENDFVILPDPDNALDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHP 59

Query: 56  ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                 A  + F+   N DGS  + CGNG R   R+L                + +A   
Sbjct: 60  EARAMAAEAEWFMDYRNGDGSVAEMCGNGTRVFARYLQHAG------LAAEGDLAIATRG 113

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               I +         K   +     K       +             V+MGNPHA+ FV
Sbjct: 114 GVKKIHI--------AKDGDITVGMGKARLPEGDVAVSVGERSWPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + DL            +    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 D-DLADAGDLLSPPPFSPAAAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + AV       +V + GG L+I    +  + MTG A    EG++     
Sbjct: 225 VAVAAARRDGADPAVTGAPATYTVDVPGGTLVITERPDGEIEMTGAAVIVAEGEI---AA 281

Query: 285 KWIKKNED 292
            W++    
Sbjct: 282 DWLESVAG 289


>gi|317050249|ref|YP_004111365.1| diaminopimelate epimerase [Desulfurispirillum indicum S5]
 gi|316945333|gb|ADU64809.1| diaminopimelate epimerase [Desulfurispirillum indicum S5]
          Length = 289

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 27/280 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+ G GN  +VI+      N   I                D ++ I   Q+A  D   
Sbjct: 13  FTKISGTGNDFIVINDLARTINYRSIQEIIPRMCHRHFGIGADGVIFIQ--QNAPTDIQW 70

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG RC  R++ S+      SF   T  G++  + +    I V + +
Sbjct: 71  HFYNADGSRAEMCGNGARCAARYIFSQGIVHENSFNLHTEAGMIGIRLDEQRLIGVQLTK 130

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P                                    ++ G PHA+  V  D+  +DL +
Sbjct: 131 PHDHRSK----------------YTIKTIKTEYLLSSINTGVPHAVLQVS-DIESFDLMN 173

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH- 240
               +  H M++ G N++I    + +++ +RT+ERGV   T +CG+ + A+ + +     
Sbjct: 174 MAPEIRFHEMYASGTNVNIYEKVAPDTIRVRTYERGVEGETLSCGTGSVAAAIVACLDDS 233

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           + +  V V   GG L I +    N V MTG+A   + G +
Sbjct: 234 EVSTEVHVITNGGELFISFDRALNSVTMTGDAHILFTGTI 273


>gi|282862297|ref|ZP_06271359.1| diaminopimelate epimerase [Streptomyces sp. ACTE]
 gi|282562636|gb|EFB68176.1| diaminopimelate epimerase [Streptomyces sp. ACTE]
          Length = 290

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 107/296 (36%), Gaps = 31/296 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +  + F K  G  N  +++       ++ +  +  L         D ++ +       
Sbjct: 1   MSTPQIAFLKGHGTENDFVIVPDPDNAIDLPASLVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DGS  + CGNG+R   R+L                + VA   
Sbjct: 61  EARAMAEQAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAG------LAAEGDLAVATRG 114

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               + +         K   +  S       +  +         +   V+MGNPHA+ FV
Sbjct: 115 GVKGVHL--------AKDGAVTVSMGHARLPKDGVRVTVDGRTWDARNVNMGNPHAVAFV 166

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           E DL H          +   ++ +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 167 E-DLAHAGDLRSVPPFSPSSVYPDGVNIEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 225

Query: 232 SVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VA+      +          +V + GG L+I    +  V MTG A    EG +D
Sbjct: 226 VAVAAARRDGVDPARTGAPATYTVDLPGGTLVITEFPDGTVDMTGPAVIVAEGVID 281


>gi|302554597|ref|ZP_07306939.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM
           40736]
 gi|302472215|gb|EFL35308.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM
           40736]
          Length = 290

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/307 (23%), Positives = 118/307 (38%), Gaps = 38/307 (12%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH-------- 53
           S  + F K  G  N  +++       ++    + AL         D ++ +         
Sbjct: 2   SMRIPFLKGHGTENDFVIVPDPENTLDLPPATVAALCDRRAGIGGDGLLHVVRSAAHPEA 61

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKEN 111
               A  + F+   N DGS  + CGNG+R   R+L              T  G+      
Sbjct: 62  KSMSAEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVTEGDLAIATRGGVKTVHIA 121

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +DG I+V MG+ +L    + ++                          V+MGNPHA+ FV
Sbjct: 122 KDGDITVGMGKALLPEGDVTVSV----------------GERSWPARNVNMGNPHAVAFV 165

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           + DL H          +    + +GVN+          + +R  ERG G T +CG+ ACA
Sbjct: 166 D-DLTHAGDLYAPPPFSPPAAYPDGVNVEFVVDRGPGHVAMRVHERGSGETRSCGTGACA 224

Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             VA+      + AV       +V + GG L+I    +  + MTG A    EG++D    
Sbjct: 225 VAVAAARRDGADPAVTGTPATYTVDVPGGTLVITERPDGQIEMTGPALIVAEGEID---A 281

Query: 285 KWIKKNE 291
            W++   
Sbjct: 282 GWLETAT 288


>gi|282854032|ref|ZP_06263369.1| diaminopimelate epimerase [Propionibacterium acnes J139]
 gi|282583485|gb|EFB88865.1| diaminopimelate epimerase [Propionibacterium acnes J139]
 gi|314922999|gb|EFS86830.1| diaminopimelate epimerase [Propionibacterium acnes HL001PA1]
 gi|314966775|gb|EFT10874.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA2]
 gi|314981110|gb|EFT25204.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA3]
 gi|315091936|gb|EFT63912.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA4]
 gi|315103437|gb|EFT75413.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA2]
 gi|327327601|gb|EGE69377.1| diaminopimelate epimerase [Propionibacterium acnes HL103PA1]
          Length = 273

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 106/292 (36%), Gaps = 31/292 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+   T RM        T  G+   K + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +SV MG   ++   +            +    P   + + NP  V + +   +  +  + 
Sbjct: 118 VSVTMGTVRVESDKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCGINLN- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                            F +GVN+         ++ +R  ERG G T +CG+   A    
Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAAT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                      +V++ GG +++      D     +TG A     GK+D+  G
Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273


>gi|213614470|ref|ZP_03371296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 216

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+M
Sbjct: 1   HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 60

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           GEP  +   +P      + ++                 VVSMGNPH +  V+ ++    +
Sbjct: 61  GEPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAV 114

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G +L  H  F E  N+   +V   E + LR +ERG G T ACGS ACA+V       
Sbjct: 115 ETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQG 174

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
                V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 175 LLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 216


>gi|325663505|ref|ZP_08151915.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470404|gb|EGC73635.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 291

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 116/287 (40%), Gaps = 12/287 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN   V D       +T + +  +         D I+            ++++ N
Sbjct: 7   KYHGLGNDYFVFDPNKNELKLTKENVRMICDRNFGMGSDGIL--EGPIFQEDKIYVKVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI-- 124
            DGSE +  GNG R   ++      +++K  TF T+ G +      +    +        
Sbjct: 65  PDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKLS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP+     ++  +    G      L     VS+GNPH +  +  ++    +   G
Sbjct: 125 FWSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           +       F   +N  + +V   E++ +  +ERGVG T A GS ACA+   +  L  TN 
Sbjct: 180 DYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLGMTNP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            V+V M GG L +E  D+  VF TGE     +  L  + G+ ++   
Sbjct: 240 GVTVHMPGGKLQVEIQDDWEVFATGEVFYIGKISLSNEFGERLRAAA 286


>gi|319790237|ref|YP_004151870.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1]
 gi|317114739|gb|ADU97229.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1]
          Length = 269

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 37/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58
           + FAK++G GN  ++I+      +         +A+  +         D ++L+ D   A
Sbjct: 3   LKFAKLQGTGNDFVIINNLAGEFDRFRGTLPVKEAVKRICSRRTGVGADGLILVEDSTVA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSIS 117
             D   R  N DGS  + CGNGMRC  RF+            ET+ G++ A         
Sbjct: 63  --DLSWRFYNADGSTAEMCGNGMRCFARFVYEEGLAPNEMRVETLAGVVEAFV-----YG 115

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             +   +   + + L    D +                    ++ G PHA+ FVE     
Sbjct: 116 PIVKVGLTKPRELALNLKVDGL----------------TVHFINTGVPHAVIFVER-ADA 158

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            ++   G  +  HP+F   G N++      L+ + +RT+ERGV   T ACG+ + AS + 
Sbjct: 159 VNVKEIGRKVRFHPLFAPAGTNVNFVE-VRLDRIVVRTYERGVEDETLACGTGSVASALI 217

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEG 277
           +  + K +  V V++  G  L + +    + V++ G  K  ++G
Sbjct: 218 AAKVFKLSSPVEVEVRSGERLKVHFDPKLSRVYLEGGTKWIYDG 261


>gi|315093308|gb|EFT65284.1| diaminopimelate epimerase [Propionibacterium acnes HL060PA1]
          Length = 273

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 107/292 (36%), Gaps = 31/292 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+   T RM        T  G+   K + DG 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +SV MG   ++   +            +    P   + + NP  V + +   +  +  + 
Sbjct: 118 VSVTMGTVRVESDKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCGINLN- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                            F +GVN+         ++ +R  ERG G T +CG+   A    
Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAAT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                      +V++ GG +++     +D     +TG A     GK+D+  G
Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPSNDGYRAILTGPAVILAAGKVDLPNG 273


>gi|157803827|ref|YP_001492376.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel]
 gi|166225750|sp|A8EZ08|DAPF_RICCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157785090|gb|ABV73591.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel]
          Length = 269

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 16/275 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++F KM G+GN  ++++ R      N++  A N          DQ ++  +  +      
Sbjct: 5   INFVKMHGLGNDCVIVNKRDLLNAHNLSQLAKNIADRHTGIGCDQFIIYENHNNF---YE 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           + I N DGS  + CGN  RC+ + +     +K  T       L+ +   +  ISV++G  
Sbjct: 62  MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITIVVGNKELLCRIEDENKISVNVGAV 121

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P            +       + L+    V +GNPH + F +  L   D    
Sbjct: 122 SFNETWMP-------SRDKIWAFAARYMIDLKETICVDVGNPHLVIFSK--LESQDQKIV 172

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  L    +F+ GVN++ A +     ++L  WERGVGLT ACGS AC S  A       +
Sbjct: 173 GETLQAKELFANGVNVNFAEIKD-NKINLSVWERGVGLTGACGSGACGSFAAGLKRGFIH 231

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
              +V    G L ++  +N ++ M G A    EG 
Sbjct: 232 SPSTVVFKHGSLNMK-EENGNIIMQGSATLIAEGV 265


>gi|332663347|ref|YP_004446135.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332161|gb|AEE49262.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100]
          Length = 262

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 108/286 (37%), Gaps = 40/286 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62
           + F K +G GN  +++D R     +    + +  L         D ++L+ +      D 
Sbjct: 4   IPFYKYQGAGNDFIMVDQRDNQWINREDRELVEKLCHRRFGIGADGLILLQNH--PGFDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
            +   N DG E   CGNG RC V F     +      F  + G   A  N    +     
Sbjct: 62  EMIYFNADGREGSMCGNGGRCTVAFARQLGVIGDRCHFLAVDGPHDANINNPEWV----- 116

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               + K+I + +                     N + ++ G+PH I FV+ ++   D+ 
Sbjct: 117 ----ELKMIDVTQ----------------VEEGSNFYYLNTGSPHYIAFVD-NVDQIDVV 155

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
             G  +  +  F            +   L + T+ERGV   T ACG+   A+ +A     
Sbjct: 156 QEGRAVRYNARFRAEGTNVNFTQLTANGLKVATYERGVEDETLACGTGVTAAALAYHLKR 215

Query: 241 KTNR---AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279
              +    V +++ GG + I +       + V++ G AK  + G++
Sbjct: 216 GGPKGAFEVPIQVKGGDMAIRFEATAQGFSDVWLCGPAKMVFAGEI 261


>gi|239905018|ref|YP_002951757.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1]
 gi|239794882|dbj|BAH73871.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1]
          Length = 285

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 25/287 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61
           V F KM+G GN  + +D R    +     D +  +         D ++   H  + + + 
Sbjct: 11  VPFFKMQGCGNDFVCVDNRVLGIDPAAMPDLVMPVCRKAFGVGADGMIFFDHAPEGSGLA 70

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRD-GSISVD 119
                 N DGS  + CGNG RC  R      +      F T  G + A+ + D   ++V 
Sbjct: 71  YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPAKHVFGTDAGPIEAEVDPDSNQVTVQ 130

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P      I +                           V+ G PHA+  ++  L   D
Sbjct: 131 LTPPKDLRMAIDIEVEGRPFHL----------------HFVNTGVPHAVAVMDH-LELVD 173

Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +   G  + +H  F   G N++        +L LRT+ERGV   T ACG+ A AS + + 
Sbjct: 174 VWKLGRAIRQHQYFAPAGTNVNFISSEEKGTLSLRTYERGVEDETYACGTGAVASAIVAR 233

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
            L  T     +   GG +L     +   ++ G A+  ++G+   ++ 
Sbjct: 234 ELGMTGEETDITTTGGEVLGVILRDGKTYLRGAAELVFKGEFYPQSL 280


>gi|328865366|gb|EGG13752.1| hypothetical protein DFA_11513 [Dictyostelium fasciculatum]
          Length = 381

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 131/380 (34%), Gaps = 99/380 (26%)

Query: 1   MQSSMVDFAKMEGIGNKILVI---------------DMRGC--------HDNITSDAINA 37
           + S+ + F KM+G GN  +V                D             ++++  +   
Sbjct: 2   IHSNEITFTKMQGAGNDFIVFKKEDIKVIPNKQFSPDSSEGVRSGASLTIEDLSVISKKL 61

Query: 38  LSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----- 92
                    DQ++++ D  +A  D  + I N DGS+   CGNG+RC  +++         
Sbjct: 62  AHRKLGIGCDQLIIVADSPNADTDYEMLIFNSDGSQASMCGNGIRCFSKYIIDNSVKSIH 121

Query: 93  ---------------------------KRKSFTFETIRGILVA----------------K 109
                                              T+ G ++                  
Sbjct: 122 DKDNKNNGSSGSGGSSDDGESSSNESENAIVHRVHTLAGTIICSTDKSQIGSKNNGDSYY 181

Query: 110 ENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS------- 161
                 + V+MG P L       L    D+           +         V        
Sbjct: 182 REDTMLVKVNMGNPYLLRTNDNTLLVPNDRTILVPTPNPSTDKPIYLERVQVDERRAIDV 241

Query: 162 ----MGNPHAIFFVED-----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
               MGNPH + F++D           D+   D++  G  LAKH MF +  N+     T 
Sbjct: 242 VLVSMGNPHCVIFLQDNIEKGQLPEGTDIDTMDISEIGQKLAKHKMFVDSCNIEFVSSTK 301

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN-- 262
                 R WERG G T ACG+ ACA  VA+  + K+   + +S+ M GG LLI+W+ N  
Sbjct: 302 ANHFKARVWERGAGETLACGTGACAVAVATVLVGKSLPEQQISINMPGGELLIDWNANEN 361

Query: 263 -NHVFMTGEAKKEWEGKLDI 281
              VF TG A   +   + I
Sbjct: 362 FGKVFKTGPATSVFSSVIKI 381


>gi|315502606|ref|YP_004081493.1| diaminopimelate epimerase [Micromonospora sp. L5]
 gi|315409225|gb|ADU07342.1| diaminopimelate epimerase [Micromonospora sp. L5]
          Length = 281

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 100/294 (34%), Gaps = 30/294 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58
           ++F K  G GN  +++       ++T   + AL         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60

Query: 59  --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG R  VR+L  R      +     G  +    R G +
Sbjct: 61  AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDR------SLAAPSGGTLPIATRAGLV 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
              +           +A    +          +  L L     V +GNPH +  +   L 
Sbjct: 115 RARVEGAD-------VAVEMRRPRLYDTATATLGGLTL-PGTAVDVGNPHLVCALPAALE 166

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIA---RVTS--LESLDLRTWERGVGLTAACGSAACA 231
              L            F  GVN+               + +R +ERG   T +CG+ ACA
Sbjct: 167 LTGLDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGTGACA 226

Query: 232 SVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
               +          ++V + GG L +    +   +++G A     G L     
Sbjct: 227 VAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAAL 279


>gi|302866047|ref|YP_003834684.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029]
 gi|302568906|gb|ADL45108.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029]
          Length = 281

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 98/298 (32%), Gaps = 38/298 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58
           ++F K  G GN  +++       ++T   + AL         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60

Query: 59  --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VR+L  R        +    T  G++ A+   
Sbjct: 61  AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDRSLTAPSGGTLPIATRAGLVRARVEG 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +          + D     L                           V +GNPH +  + 
Sbjct: 121 EDVAVEMRRPRLYDTATATLGG------------------LTLPGTAVDVGNPHLVCALP 162

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIA---RVTS--LESLDLRTWERGVGLTAACGS 227
             L    L            F  GVN+               + +R +ERG   T +CG+
Sbjct: 163 AALELTALDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGT 222

Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
            ACA    +          ++V + GG L +    +   +++G A     G L     
Sbjct: 223 GACAVAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAAL 279


>gi|50842503|ref|YP_055730.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202]
 gi|50840105|gb|AAT82772.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202]
 gi|313764469|gb|EFS35833.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA1]
 gi|313812956|gb|EFS50670.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA1]
 gi|313816007|gb|EFS53721.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA1]
 gi|313827764|gb|EFS65478.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA2]
 gi|314915461|gb|EFS79292.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA4]
 gi|314918255|gb|EFS82086.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA1]
 gi|314920068|gb|EFS83899.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA3]
 gi|314932082|gb|EFS95913.1| diaminopimelate epimerase [Propionibacterium acnes HL067PA1]
 gi|314955743|gb|EFT00143.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA1]
 gi|314958158|gb|EFT02261.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA1]
 gi|314967819|gb|EFT11918.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA1]
 gi|315098522|gb|EFT70498.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA2]
 gi|315101120|gb|EFT73096.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA1]
 gi|315105396|gb|EFT77372.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA1]
 gi|315108341|gb|EFT80317.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA2]
 gi|327450796|gb|EGE97450.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA3]
 gi|327453859|gb|EGF00514.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA2]
 gi|328754215|gb|EGF67831.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA1]
 gi|328754534|gb|EGF68150.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA2]
          Length = 273

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 105/292 (35%), Gaps = 31/292 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57
           M  F K  G GN  +++D     D +TS  +  L         D  +       + D+  
Sbjct: 1   MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
                F+   N DG+  + CGNG+R   R+   T RM        T  G+   + +  G 
Sbjct: 58  DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDGGD 117

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           +SV MG   ++   +            +    P   + + NP  V + +   +  +  + 
Sbjct: 118 VSVTMGTVRVESGKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCGINLN- 168

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                            F +GVN+         ++ +R  ERG G T +CG+   A    
Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAAT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
                      +V++ GG +++      D     +TG A     GK+D+  G
Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273


>gi|26990495|ref|NP_745920.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
 gi|24985470|gb|AAN69384.1|AE016575_2 diaminopimelate epimerase [Pseudomonas putida KT2440]
          Length = 268

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 19/271 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K    GN  LV   R C   + +   I+ +         D I++            
Sbjct: 1   MQFYKYHAAGNDYLV--YRDCVPFDCSKPMISRICDRHRGLGSDGILV--PVIKEGERLS 56

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +RI N DGS+ +  GNG+R + R+L  +       FE      +              + 
Sbjct: 57  VRIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVT-----------CQV 105

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           + + + I +A               V+   L+    VSMGNPH + FV+           
Sbjct: 106 LDNGQRISIAMGQAAFANTAAFTVDVDGTPLQL-HPVSMGNPHCVVFVDQPTETL-ARQL 163

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G L+ +  +F +  N+   RV   ++L+++ WERGVG T + G+++CA+   S  L    
Sbjct: 164 GPLIERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLGLVG 223

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
             V+V M GG ++IE  D+ HV M G   + 
Sbjct: 224 PRVAVNMAGGVIMIELDDDYHVLMQGPVCRV 254


>gi|255530124|ref|YP_003090496.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366]
 gi|255343108|gb|ACU02434.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366]
          Length = 261

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 37/285 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID       +I  + +  +         D +M +        D  
Sbjct: 3   IHFFKYQGAGNDFILIDHSASPIKDIDYEWVKKICDRRFGVGGDGLMFL--TSHPDYDFE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +   N DG     CGNG RC+V F          T F  + G   AK + +G+       
Sbjct: 61  MLYFNSDGRPGSMCGNGGRCIVAFAKHLGIIDKETNFLAVDGPHYAKISAEGNW------ 114

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                              +   I           +V++ G+PH +  +E+   +     
Sbjct: 115 ------------------VELQMIDIDTIGRDGEAYVLNTGSPHYVARMENLATYDVYHE 156

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +        EG+N++       + L +RT+ERGV   T ACG+   A  ++     +
Sbjct: 157 GKAIRNNETYKKEGINVNFVEDKG-DHLFVRTFERGVEDETYACGTGVTAVALSMALHKQ 215

Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280
            +  +   VK+LGG L +E+  N     +VF+ G A+K +EG+L+
Sbjct: 216 QSGHLKTPVKVLGGDLSVEFDYNGRQFTNVFLCGPAEKVFEGELN 260


>gi|323356747|ref|YP_004223143.1| diaminopimelate epimerase [Microbacterium testaceum StLB037]
 gi|323273118|dbj|BAJ73263.1| diaminopimelate epimerase [Microbacterium testaceum StLB037]
          Length = 284

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 38/296 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF---------QD 57
           F K  G GN  +V+       +++   I  L         D ++ +              
Sbjct: 6   FTKGHGTGNDFVVLADPDGELDLSDAQIAVLCDRHFGIGADGLLRVVRSAAIDEGAEAAA 65

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDG 114
           +  + F+   N DGS+ + CGNG R   R+L+              T  G+     +  G
Sbjct: 66  SGAEWFMDYRNADGSKAEMCGNGTRVFARYLSDTGLASLDGGLRIGTRAGVKTLTRSERG 125

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                            +      ++     +        R    + +GNPH +  V  D
Sbjct: 126 Y---------------EVDLGAFAIEATDTLVRAKGLPVARPGVGIDVGNPHVVVAVASD 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGSA 228
                L          P    G N+               ++ LR +ERGVG T +CG+ 
Sbjct: 171 AELEALD-LTYQPVLDPAPRHGANVEFVVPADPLVQEGVGAIRLRVFERGVGETLSCGTG 229

Query: 229 ACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             A+ +A      +      +V   GG L +    + HVF++G A   + G++ + 
Sbjct: 230 VAAAALAVRHWAGSAAPDVWTVDTPGGTLGVRVA-DGHVFLSGPASLVFTGEVTLA 284


>gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4]
 gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4]
          Length = 275

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 113/283 (39%), Gaps = 28/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQ----DASV 60
           ++F K  G  N  +++       ++T++ + AL         D ++ +   +    ++  
Sbjct: 4   IEFLKGHGTQNDFVLLPDAAGRLDLTAERVAALCDRQRGIGADGVLRVVRAKAIGEESVG 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISV 118
           + F+   N DGS  + CGNG R   R+L      +   F   T  G      + D S++V
Sbjct: 64  EWFMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVVHPDRSVTV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG   +    + +                       +   V++GNPH +   + D+   
Sbjct: 124 QMGPAAITGTSVTVVAGQPF-----------------SGVAVNVGNPHLVSVTDTDIAGL 166

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-G 237
           DL    +    H  F  GVNL    V    +L +R  ERGVG T ACG+   A+V AS  
Sbjct: 167 DLRDQPDFD--HDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASLH 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              K     +V + GG + +         +TG A+    G+LD
Sbjct: 225 LAGKDTGESTVDIPGGRVSVTV-GRGESTLTGPAEIVARGELD 266


>gi|260655041|ref|ZP_05860529.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1]
 gi|260630152|gb|EEX48346.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1]
          Length = 277

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 29/284 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           ++F KM G GN  +V+D         +  + A        +   D +++I   + A+   
Sbjct: 1   MNFWKMNGNGNDFIVVDATAAENIGLDWPAVARALCPRRQSIGADGLLVIERSKTAN--F 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKEN-RDGSISVDM 120
           F+RI N DGSE + CGNG RC  RF        +S  FET+ G++ A+ + R   I++  
Sbjct: 59  FMRIFNADGSEGEMCGNGARCAARFAACAGLAPQSMEFETMAGLMRARVDGRYVEINMGR 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  +W    +    +                        +G PH + F  +++     
Sbjct: 119 VRPEPEWSDRTMTLEGE----------------TFRATFALVGVPHLVLFSREEVGVDFA 162

Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238
             +G  L      F +G N++ A   +   +   T+ERGV  LT +CG+   A  +A+  
Sbjct: 163 RRWGERLRNDTAQFRQGTNVTFAAPIARGEMRAVTYERGVEDLTESCGTGCVAVALAARL 222

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278
              +     V   GG   +   +         + G       G+
Sbjct: 223 NGLSGPVTEVHNPGGTNRVSLTEMGDGEYEALLGGTTSLVMTGQ 266


>gi|15895882|ref|NP_349231.1| diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824]
 gi|21362482|sp|Q97FV2|DAPF_CLOAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|15025650|gb|AAK80571.1|AE007760_1 Diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824]
 gi|325510034|gb|ADZ21670.1| diaminopimelate epimerase [Clostridium acetobutylicum EA 2018]
          Length = 333

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/303 (24%), Positives = 130/303 (42%), Gaps = 14/303 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  ++ID    + N+  +     AI A +       D I+ +        
Sbjct: 14  INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQKSDI--C 71

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +RI N DGSE + CGNG+RCV R++   + ++S   ET++     K   D    V  
Sbjct: 72  DAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKESVEIETLKSKYWVKLQEDIYEGVKT 131

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            +  +    + +     +                  +   VS+ NPH I  V +      
Sbjct: 132 VKIDIKSVSLDVKTLPLNYKKEKLIFDKIPELSDEFDFTAVSITNPHLIAIVNNIDSDKL 191

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +       +   +  +GVN+S  +V    ++ ++T+ERGVGLT +CG+A  AS + S   
Sbjct: 192 VEIGKKGNSTKSVLPQGVNVSFVKVIDSSNIYVKTYERGVGLTKSCGTAMTASSIVSCIG 251

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
            K   + A++V   GG +    H +++    V   G A   +EG +++   K  +   D+
Sbjct: 252 EKVQFDNAINVYNDGGAIKTIVHKDSNGNYSVDFIGNATFIFEGTMELDKRKIEQFTIDE 311

Query: 294 EAY 296
             +
Sbjct: 312 SKF 314


>gi|159037042|ref|YP_001536295.1| diaminopimelate epimerase [Salinispora arenicola CNS-205]
 gi|157915877|gb|ABV97304.1| Diaminopimelate epimerase [Salinispora arenicola CNS-205]
          Length = 278

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 101/289 (34%), Gaps = 30/289 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD------- 57
           ++F K  G GN  +++        +T   + AL         D ++ +            
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLELTPGLVAALCDRRRGIGGDGVLRVVRAAHHADGVAL 60

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG R  VR+L               G ++    R G +
Sbjct: 61  ADEAEWFMDYWNSDGSAAEMCGNGARVFVRYLLESG------LAAPSGAVLPVATRAGVV 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
              +           +A    +       +  +  L L     V +GNPH +  V   L 
Sbjct: 115 RARVEGEG-------VAVEMRRPRLAGASVAGLGGLAL-PGTAVDVGNPHLVCPVPAGLE 166

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACA 231
              L           +F  GVN+    V          + +R +ERG   T +CG+ ACA
Sbjct: 167 LSALDLTRAPEFDPVVFPAGVNVEFVTVGDPVDGADGHVRMRVYERGSAETHSCGTGACA 226

Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               +      +   V+V + GG L++        +++G A     G++
Sbjct: 227 VAAVALRDGGRDTGVVAVDVPGGRLVVTLT-TQSCWLSGPAVLVATGEV 274


>gi|115379978|ref|ZP_01467031.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|310823066|ref|YP_003955424.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|115363009|gb|EAU62191.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
 gi|309396138|gb|ADO73597.1| Diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1]
          Length = 283

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 106/280 (37%), Gaps = 11/280 (3%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRII 67
            K  G+GN  +V+D R    +I ++    +         D ++ +   Q     A + + 
Sbjct: 8   FKYHGLGNDFVVLDRRQTGVDIDAELSRWMCDRRRGIGADGVLSLLPSQQGL--ARMVVH 65

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDGSISVDMGEPILD 126
           N DGS  + CGNG+RC V++L      +    +   G  V A      +  V   +  + 
Sbjct: 66  NADGSIAEMCGNGLRCAVKYLVDHGGGRPERIQVETGAGVLACVPGYEAGGVAEVDISMG 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              +        +    F   P+          VSMGNPH +         Y+    G +
Sbjct: 126 PARLVAPNLPSGVTGQPFVEAPIPEHLGLRGTAVSMGNPHLVLLGHP---LYEAERLGPV 182

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNR 244
           L  HP F +  N+   R    + L +  WERG GLT     G+ A A+          + 
Sbjct: 183 LEHHPSFPDRTNVEFVR-VDPDGLTVVVWERGCGLTQACGTGACAAAAAAVLARRLPADT 241

Query: 245 AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283
            + V + GG L I    + + + + G     +EG + I  
Sbjct: 242 WLRVTLPGGDLQIRVPSDLSEIRLRGPVAAVFEGVVTIPA 281


>gi|320008153|gb|ADW03003.1| diaminopimelate epimerase [Streptomyces flavogriseus ATCC 33331]
          Length = 290

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 119/310 (38%), Gaps = 38/310 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57
           M +S + F K  G  N  +++       ++    +  L         D ++ +       
Sbjct: 1   MSTSQIAFLKGHGTENDFVIVPDPDNALDLPVPVVARLCDRRAGIGGDGLLHVVRSAAHP 60

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK 109
                    + F+   N DGS  + CGNG+R   R+L     +        T  GI  A 
Sbjct: 61  DARDMADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGFVADGDLAVATRGGIKRAH 120

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            ++DG I+V MG  +L    + +       D                   V+MGNPHA+ 
Sbjct: 121 IDKDGDITVSMGRAVLPGSGVTVTVDGRSWDARN----------------VNMGNPHAVA 164

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           FVE DL H          +   ++ +GVN+          + +R  ERG G T +CG+ A
Sbjct: 165 FVE-DLDHAGDLFSVPPFSPQSVYPDGVNIEFVADRGPRHVAMRVHERGSGETRSCGTGA 223

Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           CA  VA+      +          +V + GG L+I  H +  + MTG A    EG +D  
Sbjct: 224 CAVAVAAARRDGVDPAQTGAPATYTVDLPGGTLVITEHPDGGIDMTGPAVIVAEGVIDPS 283

Query: 283 TGKWIKKNED 292
              W++    
Sbjct: 284 ---WVETMIG 290


>gi|158313082|ref|YP_001505590.1| diaminopimelate epimerase [Frankia sp. EAN1pec]
 gi|158108487|gb|ABW10684.1| Diaminopimelate epimerase [Frankia sp. EAN1pec]
          Length = 307

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 34/300 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI-----HDF--QD 57
           V F K  G GN  L++       +++ + + AL         D ++ +            
Sbjct: 11  VRFVKGHGTGNDFLILPDADGELDLSPELVRALCHRGTGIGADGVLRVVLTAAEPAAGDS 70

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
           A+   F+   N DGS  + CGNG+R   R+               T  G+   +    G 
Sbjct: 71  AAARWFMDYRNADGSIAEMCGNGIRVFARYLVDAGYAAPGRLVIATRAGLRAVEVPAGGD 130

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++V+MG P L    +P+  +  +                     VSMGNPHA+ F + DL
Sbjct: 131 VTVEMGPPELAAGPVPVTVAGREF----------------AAVPVSMGNPHAVCFAD-DL 173

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               LA        +P  +    +++   V + + + +R +ERGVG TA+CG+ ACA  V
Sbjct: 174 DPAGLARLDLRAPAYPAAAFPEGVNVEVVVPAPDGVAMRVFERGVGETASCGTGACAVAV 233

Query: 235 ASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           A    +       V V + GG L + W ++  V ++G A    +G L      W++    
Sbjct: 234 AWAARNGDGPPAEVEVDLPGGRLTVGWRES-TVLLSGPAVLVSDGVLRP---DWLRAAGG 289


>gi|120602343|ref|YP_966743.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4]
 gi|120562572|gb|ABM28316.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4]
          Length = 282

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 23/285 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57
           + + V F K+ G GN  + ID R    ++    D   ++         D ++ +    Q 
Sbjct: 4   KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              D      N DGS  + CGN  RC                    G   A     G + 
Sbjct: 64  HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLG---------FAGPRHAFGTDAGIVH 114

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             + +    +  + L R  D        +             V+ G PHA+ F +  +  
Sbjct: 115 A-VADVEAGYAKVELTRPRDLAAGTTLELEG----TPFTVHFVNTGVPHAVVFSD-SVDG 168

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            DL   G  L  HP F   G N + A +    ++ LRT+ERGV   T ACG+ A A+   
Sbjct: 169 LDLRRLGAALRYHPRFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATAFI 228

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  L  T+ +V V+  GG  L I+  ++  +F++G+A + + G++
Sbjct: 229 AHTLGLTDASVGVRTSGGEVLGIDI-EDGSIFLSGKAVRVFSGEM 272


>gi|47566972|ref|ZP_00237689.1| diaminopimelate epimerase [Bacillus cereus G9241]
 gi|47556290|gb|EAL14624.1| diaminopimelate epimerase [Bacillus cereus G9241]
          Length = 239

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 16/241 (6%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106
           ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+
Sbjct: 1   MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58

Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVS 161
            A+   +        +DMG P L    IP+    +    R+ F      + F      VS
Sbjct: 59  TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVS 114

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV+ D+    L + G +L  H MF E VN+    + + E ++ R WERG G+
Sbjct: 115 MGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173

Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G  
Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVY 233

Query: 280 D 280
           +
Sbjct: 234 E 234


>gi|225677211|ref|ZP_03788204.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590735|gb|EEH11969.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 262

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 140/266 (52%), Gaps = 19/266 (7%)

Query: 7   DFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  ++ID R   + +     I   S+      DQ+++I      + D F+ 
Sbjct: 8   NFIKMHGTGNNFVIIDSRSTNNLDWNHRQIADQSS-----CDQVIIITMS--NAADCFMH 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124
           I N DGS  + CGN  RCV   + S    +    E     +    +  D SI V+MG+P+
Sbjct: 61  IYNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPL 120

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPL+   D +        P+    L++P  V++GNPH +FFV+ ++    L + G
Sbjct: 121 LKWHEIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-NISEIPLRNLG 173

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTN 243
             L  H +F   +N+SIA+V     + LR WERG G+TA+CGSAACA++VAS        
Sbjct: 174 PKLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGYLVA 233

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +  SV + GG LLIEW   N+VFMTG
Sbjct: 234 QQTSVNLPGGKLLIEWA--NNVFMTG 257


>gi|225387891|ref|ZP_03757655.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme
           DSM 15981]
 gi|225046018|gb|EEG56264.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme
           DSM 15981]
          Length = 286

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 14/279 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +    +  L         D ++        +    + + N
Sbjct: 7   KYHGLGNDYLVFDPNKNKLELNPHNVALLCNRNFGVGADGVL--EGPVLENDRISMVVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124
            DGS  +  GNG+R   ++L      +   F           +        +   MG+  
Sbjct: 65  PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFHIHTAGGQVSIHYLNEEGTRLKASMGKVS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+     ++  +    G + +        +S+GNPH +  ++ ++    +   G
Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYP----VTCLSIGNPHCVILMD-EISKDLVCRIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T+ 
Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            + V+M GG + +E  ++  V +TG+      G + + +
Sbjct: 240 KMLVQMPGGTMELEIEEDGTVLLTGDVGFV--GTMKLGS 276


>gi|42521005|ref|NP_966920.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410746|gb|AAS14854.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 263

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 97/266 (36%), Positives = 140/266 (52%), Gaps = 19/266 (7%)

Query: 7   DFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +F KM G GN  ++ID R   + +     I   S+      DQ+++I      + D F+ 
Sbjct: 9   NFIKMHGTGNNFVIIDSRSTNNLDWNHRQIADQSS-----CDQVIIITMS--NAADCFMH 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124
           I N DGS  + CGN  RCV   + S    +    E     +    +  D SI V+MG+P+
Sbjct: 62  IYNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPL 121

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L W  IPL+   D +        P+    L++P  V++GNPH +FFV+ ++    L + G
Sbjct: 122 LKWHEIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-NISEIPLRNLG 174

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTN 243
             L  H +F   +N+SIA+V     + LR WERG G+TA+CGSAACA++VAS        
Sbjct: 175 PKLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGSLVA 234

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTG 269
           +  SV + GG LLIEW   N+VFMTG
Sbjct: 235 QQTSVNLPGGKLLIEWA--NNVFMTG 258


>gi|46580276|ref|YP_011084.1| diaminopimelate epimerase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449693|gb|AAS96343.1| diaminopimelate epimerase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233742|gb|ADP86596.1| diaminopimelate epimerase [Desulfovibrio vulgaris RCH1]
          Length = 282

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 23/285 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57
           + + V F K+ G GN  + ID R    ++    D   ++         D ++ +    Q 
Sbjct: 4   KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              D      N DGS  + CGN  RC                    G   A     G + 
Sbjct: 64  HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLG---------FAGPRHAFGTDAGIVH 114

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
             + +    +  + L R  D        +             V+ G PHA+ F +  +  
Sbjct: 115 A-VADVEAGYAKVELTRPRDLAAGTTLELEG----TPFTVHFVNTGVPHAVVFSD-SVDG 168

Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
            DL   G  L  HP F   G N + A +    ++ LRT+ERGV   T ACG+ A A+   
Sbjct: 169 LDLRRLGAALRYHPHFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATAFI 228

Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           +  L  T+ +V V+  GG  L I+  ++  +F++G+A + + G++
Sbjct: 229 AHTLGLTDASVGVRTSGGEVLGIDI-EDGSIFLSGKAVRVFSGEM 272


>gi|182415688|ref|YP_001820754.1| diaminopimelate epimerase [Opitutus terrae PB90-1]
 gi|177842902|gb|ACB77154.1| Diaminopimelate epimerase [Opitutus terrae PB90-1]
          Length = 286

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 11/281 (3%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61
           + + K   +GN  +V+D R         T D I  +         D  +L         +
Sbjct: 1   MRYHKYHALGNDYIVLDPRDFPSWQPAPTIDQIRVVCHRNFGVGSDG-ILWGPLPSKQSE 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISV 118
             +RI N DGSE +  GNG+R      +    ++  +FT ET  G + +    +G  I+V
Sbjct: 60  FGLRIFNPDGSEAEKSGNGLRIFSRFLWDQKLVRAPAFTVETPGGNVESVIKENGRLITV 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG    D   IP+  +     R+  +               ++GNPH +  +  ++   
Sbjct: 120 AMGRVSFDSAKIPVNLAG--AAREVINEKLTVLDREFTYCAATIGNPHCVIPL-AEISPE 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
               +G  +  HP F    N+   RV   +++ L  WERG G T A GS++ A+   +  
Sbjct: 177 IAHRYGPAIETHPNFPRKTNVQFLRVRDRQNIQLEIWERGAGYTLASGSSSSAAAAVAHR 236

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L   +R V+V M GG + IE   +  + MTG   K  EG +
Sbjct: 237 LGLVDRNVTVHMPGGTIGIEIGGDFSIMMTGTVNKVAEGTM 277


>gi|239627684|ref|ZP_04670715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517830|gb|EEQ57696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 286

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 14/277 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +    +  +         D ++       +     + + N
Sbjct: 7   KYHGLGNDYLVYDPNKNEMKLNPSNVQLMCNRNFGVGADGVL--EGPVISEDRISMVVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124
            DGS  +  GNG+R   ++L      +   F        A  +        +   MG   
Sbjct: 65  PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFTIYSSGGEAAIHYLNEEGTRLKASMGRAS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+     ++  +    G + +        +S+GNPH +  ++ ++    +   G
Sbjct: 125 FWSSDVPVEGPRREIINETMVFGRIPYP----VTCLSVGNPHCVILMD-EISKDLVCRIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T+ 
Sbjct: 180 KYSEGARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + V+M GG L IE  ++  V MTG+      G + +
Sbjct: 240 KMVVQMPGGTLEIEIDEDGVVHMTGDVGYV--GTMKL 274


>gi|222098388|ref|YP_002532446.1| diaminopimelate epimerase [Bacillus cereus Q1]
 gi|221242447|gb|ACM15157.1| diaminopimelate epimerase [Bacillus cereus Q1]
          Length = 239

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 16/241 (6%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106
           ++LI     A V   +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+
Sbjct: 1   MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58

Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVS 161
            A+   +        +DMG P L    IP+    +    R+ F      + F      VS
Sbjct: 59  TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVS 114

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPHA+ FV+ D+    L + G +L  H MF E VN+    + + E ++ R WERG G+
Sbjct: 115 MGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173

Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T ACG+ ACA+VVAS    K  R   ++V + GG L+I W +  +V M G A+    G  
Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVY 233

Query: 280 D 280
           +
Sbjct: 234 E 234


>gi|218778272|ref|YP_002429590.1| diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01]
 gi|218759656|gb|ACL02122.1| Diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01]
          Length = 278

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 32/295 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  ++ D R       ++   A    +   +   D ++L+ +      D 
Sbjct: 4   LQFYKMSGSGNDFIIADNRDGKIAKDDMPGLAKALCARKISIGADGLVLVENSD--QCDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +  N DGSE + CGN  RCV RF   +++  +  TFET+ G++ A+   +        
Sbjct: 62  KWQFYNSDGSEAEMCGNASRCVARFAYLNKIAGEKMTFETLAGVIHAEVLGET------- 114

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                     +          ++           N   ++ G PH +  V  ++   D+ 
Sbjct: 115 ----------VKAGLTDPTDVKYFYALDVDGTTCNVTSMNTGVPHVVLLVG-NIEKPDVE 163

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239
             G  +  H  F   G N++         L +RT+ERGV   T ACG+ A A+ +A    
Sbjct: 164 ELGRKIRYHEAFAPAGTNVNFVEFR-RGELAVRTYERGVEGETLACGTGAVAAALARVAA 222

Query: 240 HKTNRAVSVKML-GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
                 V V    GG L + +        ++F+ G+A   + G++     K  +K
Sbjct: 223 DAALSPVKVLTRSGGYLYVHYKRVPGGYGNIFLEGDANIIYTGEIGPDALKLAQK 277


>gi|291536434|emb|CBL09546.1| diaminopimelate epimerase [Roseburia intestinalis M50/1]
          Length = 281

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 14/279 (5%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  L+ D +     +    I  L   +     D I+             +RI N
Sbjct: 8   KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65

Query: 69  CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK-ENRDG-SISVDMGEPI 124
            DGSE +  GNG+R   R+      +K + +   T  G  +    +  G  + VDMG  +
Sbjct: 66  PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            + + IP      ++  +             N   VSMGNP+ +  +E  +        G
Sbjct: 126 FEAEQIPALGFEGEVVGESIFFCDN----FYNATCVSMGNPNCVIMLER-VDREKALHLG 180

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
             +     F   +N+ + ++   +++ +  +ERG G T A G+ ACA+  AS  L     
Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           AV+V M GG L IE+  +  +FMTG     + GK+ +  
Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGSV--VYIGKITVAE 277


>gi|299136521|ref|ZP_07029704.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8]
 gi|298601036|gb|EFI57191.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8]
          Length = 271

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 18/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  LVI+ R       S A    + +     D I  +   + A    F+R
Sbjct: 4   IGFVKAHACGNDFLVIEEREAKGKHASMAQKLCARNTGIGADGIEFLD--RRADGSFFLR 61

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DGSE +  GNG RCV  +L +   R+     T  GI   +          +   + 
Sbjct: 62  LFNADGSEAELSGNGTRCVAAWLAASEGRQEVALGTHGGIRTCRLIERKGAEWWIESAMG 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---YHYDLAS 182
             +++P A     ++             +    +V++GNPH + F + +    +      
Sbjct: 122 VPRVMPRAIEIAGVN------------GVIEGAMVNVGNPHYVIFPDSEDFSSHGMSWQE 169

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G  ++  P+F  G N+   RV + + ++ R +ERG G T + G+  CAS  A+  L   
Sbjct: 170 LGAKISVDPLFKFGTNVEFVRVLAQDQIEFRIYERGCGPTTSSGTGTCASSSAAMTLRAV 229

Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280
            R ++    GG   + W D  + + +TG A+   +G+++
Sbjct: 230 ARELAAVAQGGTQRVVWRDSTSEMMLTGPAEIICKGEVE 268


>gi|322833366|ref|YP_004213393.1| diaminopimelate epimerase [Rahnella sp. Y9602]
 gi|321168567|gb|ADW74266.1| diaminopimelate epimerase [Rahnella sp. Y9602]
          Length = 279

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 16/281 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA- 62
           M+ F +  G+GN  LV   R     +++  I  +         D +++     +   D  
Sbjct: 1   MI-FHRYHGLGNDYLVCHHRVAAL-LSNQQIRRICDRHYGIGSDGLLI----DNDDADIP 54

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE-NRDGSISVD 119
            +RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +  +  +    + VD
Sbjct: 55  SLRIINPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGGHVRCEVTDGAHQVIVD 114

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG+       +P +   D+        G  N     +  +VSMGNPH +  V+  L    
Sbjct: 115 MGQAKFSPAALPASVESDEALALPIVAGGHN----LSATLVSMGNPHCVIRVDK-LDLDL 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G+ +    +F +  N+  A+V    ++ +  WERG G T A GS++CA+  A   L
Sbjct: 170 VKQLGSEIETLAIFPKRTNVQFAQVLDRNNISIGIWERGAGYTLASGSSSCAAASAMRKL 229

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +  V+V+M GG L I +  +  V M G  +K     LD
Sbjct: 230 GLVDDHVTVQMPGGKLAISFSGDFQVNMRGPVQKIAIITLD 270


>gi|94502344|ref|ZP_01308814.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833844|ref|YP_001598040.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS]
 gi|94451099|gb|EAT14054.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206334|gb|ABS30644.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS]
          Length = 261

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 106/283 (37%), Gaps = 34/283 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K +  GN  ++I+       ++   I  +   +     D I+LI   +    D +++ 
Sbjct: 5   FLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDFYMKY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DG E   CGNG RC V F        +              +     S+      L+
Sbjct: 63  YNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFK------TIDGSHYASITKNIVSLN 116

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K I L                      +    ++ G+PH I F+++  Y         +
Sbjct: 117 MKNIELVE------------------VYKKHICINTGSPHHILFIDNKNYINVYNKGIKI 158

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG-CLHKTNR 244
                   +GVN++  +      L++RT+ERGV   T +CG+   AS +A+         
Sbjct: 159 RFNQKYIKKGVNVNFVK-VKKHILNVRTYERGVENETLSCGTGVTASAIAAYNIKKLLYN 217

Query: 245 AVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKT 283
            + V+ LGG L +++         +F+ GE    ++G L +  
Sbjct: 218 KIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKLPA 260


>gi|225630874|ref|YP_002727665.1| diaminopimelate epimerase [Wolbachia sp. wRi]
 gi|254767123|sp|C0R4N2|DAPF_WOLWR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225592855|gb|ACN95874.1| diaminopimelate epimerase [Wolbachia sp. wRi]
          Length = 262

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID   C  N  +     ++  +    DQ+++I +   A  D F+ I
Sbjct: 8   NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 61

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS+ + CGN  RCV   L S    +  T E   + IL   +  D SI V+MG+P+L
Sbjct: 62  YNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLL 121

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +        P+    L++P  V++GNPH +FFV+  +    L S G 
Sbjct: 122 KWHKIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-SVNEIPLQSLGP 174

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244
            L  H +F + +N+SIA+V     + LR WERG G+TA+CGSAACA++V S      T +
Sbjct: 175 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 234

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269
             SV + GG LLIEW   N+VFMTG
Sbjct: 235 QTSVNLPGGKLLIEWA--NNVFMTG 257


>gi|319651129|ref|ZP_08005262.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2]
 gi|317397183|gb|EFV77888.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2]
          Length = 327

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 116/291 (39%), Gaps = 19/291 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTD-DNTHFDQIMLIHDFQDASV 60
           ++  K  G GN   +ID      N T +       A+         D I+ +   + A  
Sbjct: 3   IELLKCHGSGNDFFIIDEISHTYNFTEENRAELAKAICDRSTELGADGILFVLKSEKA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----- 115
           DA +R+ N DGSE   CGNG+RCV R++   +  K    ET++  L  K+  D       
Sbjct: 61  DARMRVFNPDGSEASMCGNGLRCVARYVCELLGLKEAIIETMKADLQVKKQEDIFEDIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++     D K +PL    D +  ++     ++         V   +  +I   E   
Sbjct: 121 YLVEISPVSFDLKDLPLVLDKDTIINEKVS--GISEELAFTALAVPNPHFVSIVEKEQIT 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                     L   +  F +GVN+S  +      + +RT+ERGVG T ACG+A  AS + 
Sbjct: 179 SDLQKKISEYLNGPNDFFPDGVNVSFVKPLKKGHIYVRTFERGVGFTNACGTAMSASTLV 238

Query: 236 SGCLHK--TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDI 281
           +           V V   GG +    H+ N    + + G A   +  + +I
Sbjct: 239 TCMNGLNKIEEPVEVYNNGGKVRCVVHEKNGRQSIDLIGNASYVYRCEAEI 289


>gi|311896661|dbj|BAJ29069.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 291

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 99/287 (34%), Gaps = 22/287 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57
           +  + F K  G  N  L++        +T   + AL         D ++L+         
Sbjct: 2   TRTLTFTKGHGTENDFLLVPDPDAELGLTPADVIALCDRQAGIGADGLLLVTRSAAHPDA 61

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  + F+   N DG+  Q CGNG+R   R+L    + +  T        +A  +  
Sbjct: 62  ADMADEAEWFMDYRNPDGTTAQMCGNGIRLFARYLLETGRARPGTV------PIATRSGV 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             + +    P  D    P              I    +        V +GNPHA+  V+ 
Sbjct: 116 RQVHI----PGGDPDGHPTVAMGRPAFPGPDGIKVTANGRTWPALHVDVGNPHAVVQVD- 170

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           DL           +     + EGV +          L LR  ERG G T +CG+ A A+V
Sbjct: 171 DLADPGDLRTPPTVEPAGAYPEGVTVDFVTTRGPAHLALRVHERGAGETRSCGTGAVAAV 230

Query: 234 VASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            A             +V + GG L ++   +  + ++G A     G 
Sbjct: 231 AAVLHREPGVPTGRYTVDVAGGSLAVDVAPDGDMHLSGPAVLVATGT 277


>gi|254669724|emb|CBA03885.1| Diaminopimelate epimerase [Neisseria meningitidis alpha153]
          Length = 217

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/215 (34%), Positives = 109/215 (50%), Gaps = 6/215 (2%)

Query: 69  CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
              +    CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+MG+P   
Sbjct: 2   PTAARSGQCGNGARCFARFVADKGLTGKKEICVETANGVIFPKLSDNGMVTVNMGKPKFM 61

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
              IP      + D D    G      ++    V+MGNPHA+  V+ D+    +   G+L
Sbjct: 62  PSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPVRETGSL 119

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN--R 244
           +  H  F E VN+   +V    ++ LR +ERGVG T ACG+ ACA+VVA   L   +  +
Sbjct: 120 IEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLDEGK 179

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V + GG L IEW     V MTG A+  +EG+L
Sbjct: 180 TVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 214


>gi|258654107|ref|YP_003203263.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233]
 gi|258557332|gb|ACV80274.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233]
          Length = 281

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/280 (22%), Positives = 100/280 (35%), Gaps = 25/280 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G  N  +++  R    ++T + + AL         D ++ +    DA    F+  
Sbjct: 16  FLKGHGTENDFVLLPDRADELDLTENRVRALCDRRAGLGGDGVIRVVP--DADGGFFMDY 73

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPI 124
            N DGS  Q CGNG R   R++            F T  G  VA     G +S++MG   
Sbjct: 74  RNADGSLAQMCGNGARLFARYMVDAGWAAPGRIPFRTRGGPRVAHVQTSGDVSIEMGPAT 133

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L                                  V +GNPH +     D          
Sbjct: 134 LG-----------------VASRAAIGDAAFAGIAVDVGNPHLVCLDIGDRSTLAALDLS 176

Query: 185 NLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHKT 242
           +     P +F +GVN+          + +R  ERGVG T +CG+     +        +T
Sbjct: 177 HAPEFDPQVFPDGVNIEFVTAQGPGEVAMRVHERGVGETRSCGTGTVAVAAATLAAAGRT 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              V V + GG + ++        +TG A    +G+++ +
Sbjct: 237 QGRVLVNVPGGQVTVDIAPGTS-MLTGPAVIVAQGRVEPQ 275


>gi|313837162|gb|EFS74876.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA2]
 gi|314927816|gb|EFS91647.1| diaminopimelate epimerase [Propionibacterium acnes HL044PA1]
 gi|314971935|gb|EFT16033.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA3]
 gi|328907280|gb|EGG27046.1| diaminopimelate epimerase [Propionibacterium sp. P08]
          Length = 274

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/290 (20%), Positives = 105/290 (36%), Gaps = 31/290 (10%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQDAS 59
            F K  G GN  +++D    HD +T + +  L         D  +       + D+    
Sbjct: 4   KFWKGHGTGNDFVIVDR---HDPLTPEQVRWLCHRRFGIGADGTLQALRARDVEDWNGDP 60

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSIS 117
              F+   N DG+  + CGNG+R   R+L       +      T  G+   + + DG IS
Sbjct: 61  DLWFMDYRNADGTIAEMCGNGLRVFARYLVQAGHMMTAEADIATRAGVRHVRLHDDGDIS 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
           V MG   ++   + +          +  +G        NP  V + +   +  +  D   
Sbjct: 121 VTMGTVRIEPDDVTIEHQDTWWSACKVDVG--------NPHAVVVTDHTTVSGINLD--- 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                          F +GVN+         ++ +R  ERG G T +CG+   A      
Sbjct: 170 -----DSPTWQPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAATMA 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284
              +     +V + GG +++      D     +TG A     G++D+  G
Sbjct: 225 ARTRHRGPWTVYVPGGQVVVTLSPSDDGYQAVLTGPAVILAAGQVDLPNG 274


>gi|160880469|ref|YP_001559437.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg]
 gi|160429135|gb|ABX42698.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg]
          Length = 282

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 12/266 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G GN  LV D +     +    I  +         D I++     +     ++RI
Sbjct: 5   FEKYHGNGNDYLVFDTKKFEYELQGSQIREICDRHFGVGSDGILM--GPYEKEDGIYVRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----DGSISVDMGE 122
            N DGSE +  GNG+    +FL                    + +     +G+++V MG+
Sbjct: 63  FNPDGSEAEKSGNGISIFAQFLKDHKYVTEDVITINTLGGPIEIHYINDKNGTLNVAMGK 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  IP+     ++  +         +       +++GNPH +   ++ +    + S
Sbjct: 123 VSYMSDEIPVTGESREVIEEAMEFQGQKVIT----TCLTIGNPHCVIIRDELVKKE-VKS 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G ++     F   +N+   +V + E + +  +ERG G T + GS++CA+   +  L  T
Sbjct: 178 LGKIIESDEHFPNKINVQFMQVLNREEIVIEIYERGAGYTLSSGSSSCAAANVAYKLGLT 237

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMT 268
           +R V V M GG + +E  ++   FMT
Sbjct: 238 DRKVKVHMPGGTVEVEIEEDGMTFMT 263


>gi|58698204|ref|ZP_00373125.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535285|gb|EAL59363.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 263

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           +F KM G GN  ++ID   C  N  +     ++  +    DQ+++I +   A  D F+ I
Sbjct: 9   NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125
            N DGS+ + CGN  RCV   L S    +  T E   + IL   +  D SI V+MG+P+L
Sbjct: 63  YNADGSKAEMCGNAARCVGYLLMSEKGTEHITIELVNKRILECFKVGDKSIKVNMGKPLL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            W  IPL+   D +        P+    L++P  V++GNPH +FFV+  +    L S G 
Sbjct: 123 KWHKIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-SVNEIPLQSLGP 175

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244
            L  H +F + +N+SIA+V     + LR WERG G+TA+CGSAACA++V S      T +
Sbjct: 176 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 235

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269
             SV + GG LLIEW   N+VFMTG
Sbjct: 236 QTSVNLPGGKLLIEWA--NNVFMTG 258


>gi|210617939|ref|ZP_03291825.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787]
 gi|210149078|gb|EEA80087.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787]
          Length = 285

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 112/270 (41%), Gaps = 12/270 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +  + +  L   +     + I+        +    +RI N
Sbjct: 7   KYHGLGNDYLVFDPNKNEMELNEENVRLLCDRNYGIGAEGIL--EGPVFETEQMGVRIWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124
            DGS+ +  GNG R   ++L      +   F         +          I + +G+  
Sbjct: 65  PDGSKAEMSGNGDRIFAKYLKDAGYVQKRNFHFQTPGGEIEVFYLNEDGSRIRLSVGKAS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                IP+     ++  +    G   +        VS+GNPH +  ++ ++  + +   G
Sbjct: 125 FWSDEIPVTGERREVVDEDMVFGRNLYPT----TCVSVGNPHCVIPMK-EVSKHLVCKIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
           N       F   +N  + +V   E++ +  +ERGVG T A GS+ACA+  A+  L  TN 
Sbjct: 180 NHSEIARYFPNKINTQVMQVIDEENIRIEIFERGVGYTLASGSSACAAAAAAYKLGLTNP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            V+V M GG L +E  ++  +F+TGE    
Sbjct: 240 GVTVHMPGGELQVEIQEDWEIFVTGEVFYI 269


>gi|325263682|ref|ZP_08130416.1| diaminopimelate epimerase [Clostridium sp. D5]
 gi|324031391|gb|EGB92672.1| diaminopimelate epimerase [Clostridium sp. D5]
          Length = 285

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 15/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +   +  G+GN  LV D       +       L   +     D I+             +
Sbjct: 3   ITLERYHGLGNDYLVYDPNKNELELNKANAEMLCNRNMGLGSDGIL--EGPFIGEKHMSL 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDM 120
           RI N DGS  +  GNG+R   ++L      +   ++ +    + +          + + M
Sbjct: 61  RIWNPDGSVAEKSGNGVRIFAKYLKDAGYVQKKNYKLVTDGGLVEITYLNEDGSRLRISM 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       +P+     ++  +    G      L     VS+GNPH +  +  ++    +
Sbjct: 121 GKLSFWSDEVPVTGERREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISQPLV 175

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              GN       F E +N  I +V    ++ + T+ERG G T A G+ ACA+   +  L 
Sbjct: 176 CKIGNYSEVARYFPERINTEIMKVIDNNNIAIETFERGAGYTMATGTGACAAAGVAHKLG 235

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
            T   V V M GG L +E  +N  V+MTGE     +  L   + ++++K
Sbjct: 236 MTGNKVVVHMPGGELQVEIDENWEVYMTGEVFYVAKIDL---SNEFVEK 281


>gi|269795603|ref|YP_003315058.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542]
 gi|269097788|gb|ACZ22224.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542]
          Length = 313

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 111/303 (36%), Gaps = 30/303 (9%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ----- 56
           ++ + FAK  G  N  +++D R    ++T + + AL+        D ++ +         
Sbjct: 8   TTPLPFAKGHGTENDFVLLDDREARLDLTPELVRALADRRAGVGGDGVIRVVPSSALAEG 67

Query: 57  ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI 105
                 + +   F+   N DGS  Q CGNG+R    +L           +     T  G 
Sbjct: 68  RAVLAHEPAAHWFMDYRNADGSVAQMCGNGVRVFAAYLEELGLATFADGRELVLGTRAGA 127

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
              ++   G  +VDMG          +   FD          P      R    V +GNP
Sbjct: 128 RRVRKEDSGWYAVDMGVWSFPGGDAAVRDGFDAEVTVSGL-EPAGTQVPRPALSVDLGNP 186

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---------ESLDLRTWE 216
           H +  +   L   D A         P+ +EG N+ +                 + +R  E
Sbjct: 187 HTVVAL-ASLDDLDRADLHTAPDVLPLPAEGTNVELVVPLGEETSVDGTVVGRVRMRVHE 245

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           RGVG T +CG+ ACA+ +A              V + GG + +   ++ HV + G A   
Sbjct: 246 RGVGETRSCGTGACAAALAVRAWAGAGAPDVWLVDVPGGTVRVTLLEDGHVELAGPAVLV 305

Query: 275 WEG 277
            +G
Sbjct: 306 ADG 308


>gi|325294638|ref|YP_004281152.1| diaminopimelate epimerase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065086|gb|ADY73093.1| Diaminopimelate epimerase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 270

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 35/286 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58
           + F+K++G GN  ++ID R               A+  +         D ++LI + + A
Sbjct: 3   LRFSKLQGTGNDFVIIDNRNKGFEKFIDNLPIKKAVQKICQRKTGVGADGLILIENSEIA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSIS 117
             D   +  N DGS  + CGNG RCV RF   +    +   FET+ GI+ A+ N      
Sbjct: 63  --DFKWQFFNSDGSTAEMCGNGARCVARFAFQKGIAPQKMKFETLAGIIEAEVNVSTV-- 118

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                       + L +  D             ++   +   ++ G PH + FV+  +  
Sbjct: 119 -----------KVKLTKPHDLK--------LNLNVEGVSGHFINTGVPHFVVFVDR-IED 158

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            ++   G  +    +F             L+ + +RT+ERGV   T ACG+ + AS + S
Sbjct: 159 VNVREVGRKIRFSELFQPSGTNVNFVEAQLDKIFVRTYERGVEDETLACGTGSVASALIS 218

Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280
           G + K N  + V       L + +  N N VF+ G     ++G L+
Sbjct: 219 GKVFKMNSPIEVVTKNRERLKVYFDKNMNDVFLEGATTWVYDGFLN 264


>gi|206576941|ref|YP_002238279.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|290509319|ref|ZP_06548690.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
 gi|206565999|gb|ACI07775.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342]
 gi|289778713|gb|EFD86710.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
          Length = 288

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 120/279 (43%), Gaps = 13/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K  G+GN  LV   R   + ++++ I  L         D +++        ++  +
Sbjct: 4   LHFHKYHGLGNDYLVC-HRDVAEQLSNEHIQMLCHRHYGVGSDGLLI---DSGDQINPTL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN-RDGSISVDMG 121
           RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +    +     ISVDMG
Sbjct: 60  RIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVDMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   +  +       +         +  +VSMGNPH +  V+  L    + 
Sbjct: 120 RANFNPAALPALVNLPEAVNYPLPLAD----ETLSVVLVSMGNPHCVVLVDK-LDLAQVH 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H +F +  N+    V    +L +  WERG G T A GS++CA+  A   L K
Sbjct: 175 RLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRLGK 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  V V M GG L I +  +  V M G   K     LD
Sbjct: 235 VDDRVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273


>gi|85857916|ref|YP_460118.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
 gi|85721007|gb|ABC75950.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB]
          Length = 277

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 132/302 (43%), Gaps = 38/302 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60
           M++F KM G GN  ++ID R             + A+     +   D ++L+        
Sbjct: 1   MIEFFKMSGSGNDFILIDNREGALSSIKNIPSFVEAICRRKVSVGADGVILVERS--PRA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVD 119
           D   R  N DGSEV+ CGNG RCV RF   +    +  +FET+ G++ A+  R   + + 
Sbjct: 59  DFQWRFFNADGSEVEMCGNGGRCVARFAYLKGIAGERMSFETVAGLIDAEL-RGDDVKLR 117

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + EP       P+    + +  D                  + G PH + FVE +L  +D
Sbjct: 118 LTEPSSLQANQPIPVGDEILTVDSL----------------NTGVPHVVAFVE-ELGGFD 160

Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           +  +G  L         G N +   VTSL SL +RT+ERGV   T ACG+ + AS +A+ 
Sbjct: 161 VFRYGRALRYAEAFQPAGTNANFVTVTSLHSLSVRTYERGVEDETLACGTGSVASALAAA 220

Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHD-NN---HVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
                   V V +  G  L I +   +    +V+M G  +  +EG+L      W +  ++
Sbjct: 221 ARGLVESPVEVTVRSGERLKIHFERIDGAFRNVYMEGRVRVIYEGRL------WEEAWQE 274

Query: 293 DE 294
           + 
Sbjct: 275 NG 276


>gi|322436409|ref|YP_004218621.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9]
 gi|321164136|gb|ADW69841.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9]
          Length = 266

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 27/283 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K    GN  L+I+           A    S + +   D I  +   + A    F+
Sbjct: 1   MISFVKAHACGNDFLIIEEAVAGRRHAELAQKLCSRNTSVGADGIEFLE--RRADGSFFL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDM 120
           R+ N DGSE +  GNG RCV  +L            T  G+   +          I   M
Sbjct: 59  RLFNADGSEAELSGNGTRCVAAWLAQSEGLNEVALGTHGGVRTCRVISSDGPVFQIESGM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---YH 177
           G P +  + I L                   + +    +V++GNPH + FV+ D    + 
Sbjct: 119 GVPRVMRRAIEL-----------------EGVGVVEGAMVNVGNPHYVLFVDTDDFGSHG 161

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
                 G  +A  P+F  G N+   +V S + ++ R +ERG G T + G+  CAS  A+ 
Sbjct: 162 MTWQELGGKIAVSPLFPHGTNVEFVKVKSADEIEFRIFERGCGPTTSSGTGTCASSSAAI 221

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAKKEWEGKL 279
            L    R+++    GG   + W  N    M TG A+    G++
Sbjct: 222 ALRDCARSLTAVAEGGAQSVVWPSNGEAMMLTGPAEFVCVGEV 264


>gi|160937942|ref|ZP_02085300.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439168|gb|EDP16922.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC
           BAA-613]
          Length = 286

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 100/270 (37%), Gaps = 12/270 (4%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G+GN  LV D       +T   +  +         D I+             + + N
Sbjct: 7   KYHGLGNDYLVYDPNKNKLKLTPSNVQLMCNRNFGVGADGIL--EGPVLDGEQISMVVWN 64

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124
            DGS  Q  GNG+R   ++L      +   F        A  +        +   MG+  
Sbjct: 65  PDGSVAQKSGNGVRIFAKYLKDAGYVQKKDFTISSQGGEASIHYLNEEGTRLKASMGKVS 124

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                +P+     ++  +    G + +        +S+GNPH +  ++ ++    +   G
Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYP----VTCLSIGNPHCVILMD-EISKDLVCRIG 179

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F E +N  I +V     +    +ERG G T A GS  CA+  A+  L  T+ 
Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            + V+M GG L +E      V MTG+    
Sbjct: 240 KMFVQMPGGTLELEIDGEGVVHMTGDVGYV 269


>gi|270260895|ref|ZP_06189168.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13]
 gi|270044379|gb|EFA17470.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13]
          Length = 317

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 13/277 (4%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G+GN  LV         ++++ I  L         D +++       +++  +RI
Sbjct: 33  FHKYHGLGNDYLVC-HHSVAARLSNEQIRILCHPHYGIGSDGLLI---DSGDNINPTLRI 88

Query: 67  INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS-ISVDMGEP 123
           IN DGSE +  GNG+R   R+L    R+    F   T  G +  + + D   + VDMG  
Sbjct: 89  INPDGSEAEKSGNGLRIYARYLFDIGRVGHLPFLVHTAGGDVQCQVDEDKHRVRVDMGRA 148

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
             +   +P          +  +          +  +VSMGNPH +  V   L    +   
Sbjct: 149 NFNPAALPALIDLP----EALNYPLALAEETLSVSLVSMGNPHCVVPVTR-LDLAQVHRL 203

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           G  +  HP+F +  N+ +  V   ++L +  WERG G T A GS++CA+      L++ +
Sbjct: 204 GPQIENHPLFPKRTNVQLVEVIDRQTLRIGIWERGAGFTLASGSSSCAAASVMRKLNRVD 263

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             VSV+M GG L I +  + HV M G   K     LD
Sbjct: 264 DNVSVQMPGGQLQISFSGDFHVRMRGPVHKIASLTLD 300


>gi|256370805|ref|YP_003108630.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM]
 gi|256009597|gb|ACU52957.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM]
          Length = 263

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 38/285 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K +  GN  ++I+      ++    I  L   +     D ++LI   +  + D +++ 
Sbjct: 5   FFKYQATGNDFIIINNLCKQFSLKEKIIQRLCNRNLGIGADGLILIEKIK--NYDFYMKY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            N DG E   CGNG RC V F        +K+  F+TI G   A  N+            
Sbjct: 63  YNSDGKEGSMCGNGGRCSVHFAKKIGVLHKKNTLFKTIDGYHYATINK------------ 110

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLAS 182
                       + +  +  ++  +      +   ++ G+PH I F++  +++       
Sbjct: 111 ------------NIVSINMTNVEFLTVEVDSDSIFLNTGSPHHIIFIKKIENINRNINIK 158

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              L +       GVN++  +  +     +RT+ERGV   T +CG+   ASV+A+    K
Sbjct: 159 GRKLQSSKKYLKTGVNVNFVQ-INKHIFYVRTYERGVENETLSCGTGVTASVIAAYHKKK 217

Query: 242 TNRAVS-VKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
                  VK  GG L +++         +F+ GE    ++G + I
Sbjct: 218 IFFKKILVKTRGGLLQVKFDTLLQSYKRIFLKGEVNFVYKGVIKI 262


>gi|325280263|ref|YP_004252805.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712]
 gi|324312072|gb|ADY32625.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712]
          Length = 267

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 102/285 (35%), Gaps = 38/285 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63
           ++ F K +G GN  ++ID R      T + +            D +ML+        D  
Sbjct: 2   IIKFQKFQGAGNDFIIIDNRNQVYEFTREIVEYFCDRKFGIGADGLMLLETC--PGYDFK 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122
           +R  N DG E   CGNG RC+V +          T F    G    +    G        
Sbjct: 60  MRYFNSDGREASLCGNGSRCIVAYAHRLGLFLQTTRFLAADGEHQGEITLQGVRVKMN-- 117

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                                            + F +  G+PH +  V D      + +
Sbjct: 118 ------------------------DVSRITVTPDYFFLDTGSPHYVKVVADAFQTDVVTA 153

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC-ASVVASGCLH 240
              +         G N++    T    + + T+ERGV   T ACG+    A++ A+   H
Sbjct: 154 GRMIRYAPSFQPGGTNVNFITPT-PACIRIATYERGVEDETLACGTGCVAAALSAALLNH 212

Query: 241 KTNRAVSVKMLGGGLLIEWHD--NNH---VFMTGEAKKEWEGKLD 280
             +   +++  GG L + +    +NH   +++ G A+  + G+++
Sbjct: 213 DHSGTYTLQTKGGILKVSFKQLADNHFTDIWLEGPAEFVFAGEIE 257


>gi|190571354|ref|YP_001975712.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357626|emb|CAQ55067.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 264

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/270 (34%), Positives = 138/270 (51%), Gaps = 19/270 (7%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           +  + F KM G GN  ++ID R   + +     I    +      DQ+++I      + +
Sbjct: 6   TDKIPFVKMHGTGNSFVIIDSRSANNLDWNYRQIADQGS-----CDQVIIITMS--NAAN 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDM 120
            F+ I N DGS  + CGN  RCV   +      +  T E     IL   +  D SI V+M
Sbjct: 59  CFMHIYNADGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNM 118

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+P+L W  IPL+   D +        P+    L+ P  V++GNPH +FFV+ ++    L
Sbjct: 119 GKPLLKWNEIPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFVD-NISEIPL 171

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            + G  L  H +F +  N+SIA++     ++LR WERG G+TA+CGSAACA+ VAS    
Sbjct: 172 QNLGPKLENHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRK 231

Query: 241 -KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
               +  SV + GG LLIEW  N  + MTG
Sbjct: 232 CLATKQTSVHLPGGHLLIEWSKN--ILMTG 259


>gi|330752001|emb|CBL80514.1| diaminopimelate epimerase [uncultured Polaribacter sp.]
          Length = 256

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 108/284 (38%), Gaps = 40/284 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           +F K +G GN  +++D R       + + I+ L         D ++LI +  D   D  +
Sbjct: 4   NFYKYQGTGNDFIMVDNRAEIFPKENMEIISNLCNRYFGIGADGVILIEN--DIKHDFKM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEP 123
              N DGS+   CGNG RC V F       K+ T F  + G   A+   +          
Sbjct: 62  IYFNADGSQT-FCGNGGRCAVAFARYLNIIKNKTNFIAVDGPHFAEIKNN---------- 110

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                 I   +     N      G  H +  V+  L +Y +   
Sbjct: 111 ----------------IVSLKMIDVDDIRIQENSVFAYTGTQHHVEMVD-SLDNYPVYEK 153

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
           G  +      + G N++     +  +  +RT+E+GV   T ACG+   A  +A     KT
Sbjct: 154 GKQIR-ASYDAPGSNVNFVEQINNNTFRVRTYEKGVEGETLACGTGVTAVAIAMHKTKKT 212

Query: 243 NRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
               + + + GG L + + + N     V++ G A   ++G++ I
Sbjct: 213 TSNLIYLPVEGGVLEVSFTEENGNYKDVYLLGSATFVFKGEIQI 256


>gi|238063468|ref|ZP_04608177.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
 gi|237885279|gb|EEP74107.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149]
          Length = 283

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 102/289 (35%), Gaps = 30/289 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58
           ++F K  G GN  +++        +T   + AL         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGALELTPGLVAALCDRRRGLGADGVLRVVRAAKHPEGAGQ 60

Query: 59  --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  + CGNG R  VR+L               G  ++   R G +
Sbjct: 61  AGEAEWFMDYWNADGSFAEMCGNGARVFVRYLVETG------LAVPEGAALSVATRAGVV 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                  ++  + I +     +  R                  V +GNPH +  +   L 
Sbjct: 115 RA-----LVAGEAISVEV---RRPRVYATSTAALGGLTLAGSAVDVGNPHLVCALPAGLE 166

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACA 231
              L           +F  GVN+               + +R +ERG   T +CG+ ACA
Sbjct: 167 LGALDLTRAPGFDPAVFPAGVNVEFTAPGGPVDGTDGHVLMRVYERGSAETLSCGTGACA 226

Query: 232 -SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + VA     +    V+V + GG L +   D+   ++ G A     G L
Sbjct: 227 VAAVALHDAGRNTGTVAVDLPGGRLTVTMTDD-SCWLAGPALLVASGTL 274


>gi|325962849|ref|YP_004240755.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468936|gb|ADX72621.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 314

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 107/303 (35%), Gaps = 37/303 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-------- 56
           + F+K  G GN  +++       +I +D + AL         D ++     +        
Sbjct: 19  LRFSKGHGTGNDFVLVADPEGAHSIAADEVAALCDRHRGIGGDGLIRAVPSRFLPEGREL 78

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVA 108
                  + F+   N DGS  + CGNG+R  V FL +            T  T  G+   
Sbjct: 79  LVTAPEAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLVDLPDGGALTIGTRGGVKTV 138

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               +G          +       A++ D +               R    VSMGNPH +
Sbjct: 139 VRTGEGYAVDMGPWEFIFPGE-ATAKAMDSLVTAE------GLEVPRPALSVSMGNPHTV 191

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +  +L               P+ + G N+     +         S+ +R  ERGVG T
Sbjct: 192 VAL-AELSELAGTRLFTAPQVDPVPANGTNVEFVVPSEPLVHDGVGSVTMRVHERGVGET 250

Query: 223 AACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWE 276
            +CG+ ACA+ VA              + + GG + +++      + HV ++G A     
Sbjct: 251 QSCGTGACAAAVAIRHWAGAEAPDSWRIHVPGGEVGVKFFAGPGGHEHVELSGPAVIVAT 310

Query: 277 GKL 279
           G L
Sbjct: 311 GTL 313


>gi|293977956|ref|YP_003543386.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN]
 gi|292667887|gb|ADE35522.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN]
          Length = 259

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 106/282 (37%), Gaps = 34/282 (12%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K +  GN  ++I+       ++   I  +   +     D I+LI   +    D +++ 
Sbjct: 5   FLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDFYMKY 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DG E   CGNG RC V F        +              +     S+      L+
Sbjct: 63  YNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFK------TIDGSHYASITKNIVSLN 116

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K I L                      +    ++ G+PH I F+++  Y         +
Sbjct: 117 MKNIELVE------------------VYKKHICINTGSPHHILFIDNKNYINVYNQGIKI 158

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG-CLHKTNR 244
                   +GVN++  +      L++RT+ERGV   T +CG+   AS +A+         
Sbjct: 159 RFNQKYIKKGVNVNFVK-VKKHILNVRTYERGVENETLSCGTGVTASAIAAYNIKKLLYN 217

Query: 245 AVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            + V+ LGG L +++         +F+ GE    ++G L + 
Sbjct: 218 KIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKLA 259


>gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
 gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
          Length = 1411

 Score =  146 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 40/312 (12%)

Query: 6    VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63
            + F KM+  GN  +VI+         +     L          D ++LI + + A  DA 
Sbjct: 1104 ITFYKMDSTGNDFIVINAMNQVVKNPAGLAVRLCDRRNGGIGADSLVLIEESKIA--DAK 1161

Query: 64   IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-------------KSFTFETIRGILVAKE 110
            +R  N DG+E +  GN +RCV ++L     +             +  T ET  G+     
Sbjct: 1162 MRFFNLDGTEGKMAGNAIRCVGKYLYDNNIKGIQEKHGKKTDATEKITIETGSGVKTLVL 1221

Query: 111  NRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--------- 157
             +      S++VDMG+P+   + IP +     +    F+    N +  +           
Sbjct: 1222 YKQNGKVTSVTVDMGKPLFASEEIPTSLVAVDITNCGFNEENKNAVLPKKAVVNAPLIVA 1281

Query: 158  ------FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
                    +++GNPH + F +  +    +   G L   H +F E  N    RV     L 
Sbjct: 1282 GNEYRVTCINVGNPHCVVFSKF-VDKEPVTKIGPLFESHLVFPEKTNTEFVRVVGPNELK 1340

Query: 212  LRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
            +RTWERG G T ACG+ ACA+ VAS        N+ ++VK+ GG L++++     V +TG
Sbjct: 1341 MRTWERGNGETLACGTGACAAAVASVINGFSPINQDITVKVRGGNLIVKYT-GETVLLTG 1399

Query: 270  EAKKEWEGKLDI 281
              K  ++G+++I
Sbjct: 1400 NTKMCYQGEVEI 1411


>gi|320105951|ref|YP_004181541.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4]
 gi|319924472|gb|ADV81547.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4]
          Length = 271

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 19/283 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+ F K    GN  L+++           A    +   +   D +  +   + A     +
Sbjct: 1   MIPFVKAHACGNDFLIVEENLAQGRHAELARRLCARTTSVGADGVEFLE--RTAEGAFNL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           R+ N DGSE +  GNG RCV  +L    +    T  T  G    +  R       +   +
Sbjct: 59  RLFNADGSEAELSGNGTRCVAAWLAVHERIMEVTLHTHGGPRTCRTLRVEGEECMISTLM 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD---LA 181
              +++P +   D +                    V++GNPH + F + + +        
Sbjct: 119 GVPQVMPHSFDVDGVGN-------------VQGVDVNVGNPHFVVFTDAEDFSSHGLSWE 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP F  G N+   RV   + ++ R +ERGVG T + G+  CAS  AS  L  
Sbjct: 166 ELGAKICTHPAFPSGTNVEFVRVLDEDRIEFRIFERGVGPTHSSGTGTCASSAASIALRG 225

Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKT 283
               ++   +GG   + W   +  + +TG A+    G++ +  
Sbjct: 226 AGHILAATSIGGTQQVVWPARDEEMELTGPAEIVCVGEVSVDE 268


>gi|66804951|ref|XP_636208.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4]
 gi|60464570|gb|EAL62707.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4]
          Length = 356

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 121/344 (35%), Gaps = 68/344 (19%)

Query: 6   VDFAKMEGIGNKILVI--------DMRGCHDNITSDAIN--ALSTDD-NTHFDQIMLIHD 54
           + F+KM G GN  +V         D       +         LS       FDQ ++I++
Sbjct: 13  IPFSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINN 72

Query: 55  FQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---------------MKRKSF 97
                 S    + +IN DG +   CGNG+RC  +++                        
Sbjct: 73  NPKVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNGTPKLVDGGDIEQ 132

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
             ET+ G+++        ++      I       L    ++   D F             
Sbjct: 133 KIETLAGLVITYPKITHHLNQYNLMMIKVNMNNALVLKTNQYKDDEFENVLNKKTTNEKA 192

Query: 158 F------------------VVSMGNPHAIFFVEDDLY----------------HYDLASF 183
           +                  +VSMGNPH + F+E ++                    +   
Sbjct: 193 YIYTIKDLSLPQCDQLECVLVSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEI 252

Query: 184 GNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              L K P+F +G N+      +      +  R +ERG G T ACG+ AC   VAS  + 
Sbjct: 253 ATKLQKLPLFKDGCNVEFVSTNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMS 312

Query: 241 KT--NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
               ++ V+V M GG LLI+W  +   VF TG A   +   + +
Sbjct: 313 YCTQDKEVTVSMPGGDLLIQWSSETGEVFKTGPACTVFNSNIKL 356


>gi|257871091|ref|ZP_05650744.1| diaminopimelate epimerase [Enterococcus gallinarum EG2]
 gi|257805255|gb|EEV34077.1| diaminopimelate epimerase [Enterococcus gallinarum EG2]
          Length = 276

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 24/280 (8%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + KM+G GN  +VID R  + +   +   A        +   D +M +   +  + D  +
Sbjct: 5   YTKMQGAGNDFIVIDNRRYNFSSKQLAKLAAQVCQRKFSIGADALMAVDHPE-GTGDFRM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           R  N DG+E + CGNG RC+ R+   +++  ++   ET+ G + A         V +  P
Sbjct: 64  RFYNADGTEAEMCGNGARCIARYAYENKVASEAMVIETVAGPVPAWRLDRQQYKVTLNPP 123

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLA 181
            +     P A   +    D   +G               G PHA+       +     L 
Sbjct: 124 TVAKFDQPFA-DREVPVVDYIELGDP-------------GIPHAVVKYPGLQETSLDALT 169

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA-SGCL 239
                +     F +G N++     S   L +RT+ERGV   T ACG+ + A+  A +   
Sbjct: 170 DLAQRIRYWSAFPKGANVNFYDADSAGELVVRTYERGVEGFTYACGTGSGATAYAVARRR 229

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            +T   + + +LGG L +E   +  + + G+A    EG++
Sbjct: 230 EQTQANLVLHVLGGELRVEVA-SEELQLIGDAIFVSEGRI 268


>gi|331092445|ref|ZP_08341270.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401288|gb|EGG80877.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 259

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 24/278 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+ +GN  + ++       N +  A            D ++LI   + A  D  +
Sbjct: 1   MRFTKMQALGNDYIYVNAMEEKIENPSVLAQKLSDRHFGVGGDGLILIDFSEKA--DVKM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           R+ N DG+E + CGNG+RCV +++  +   K+   +      + +         +     
Sbjct: 59  RMFNADGTEGEICGNGIRCVAKYVYDKKIVKNKNIKIETYNGIIETKIFQKKYSETILAD 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +    I        M  + +               +SMGNPH + +    +         
Sbjct: 119 MGQPSIGEENKKIVMGEEEYTAD-----------YISMGNPHLVVY----VDDPKRIQMK 163

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                     E VN+    V +   + +R  ERG G T ACG+ ACA+ V+       + 
Sbjct: 164 EWQEY-----EKVNVEFVTVLNRNKISMRVKERGTGETLACGTGACAAAVSCMKKQYVDN 218

Query: 245 AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
            V V+M GG L +EW  + NH+F  GEAK  +EG++DI
Sbjct: 219 YVEVEMPGGNLFVEWEKDSNHIFAAGEAKTVFEGEVDI 256


>gi|302561672|ref|ZP_07314014.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
 gi|302479290|gb|EFL42383.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000]
          Length = 301

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 113/290 (38%), Gaps = 22/290 (7%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIML-----IHD------ 54
           DF K E +GN  LVID      + T+D +  +         D ++      +        
Sbjct: 4   DFTKYEALGNDYLVIDPSAAWASPTADTVRMVTDRRRGVGADGLLFGPLADLGPDDGPPL 63

Query: 55  -FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN 111
                     +RI N DG+     GNG+R   R+L          FT  T  G    +  
Sbjct: 64  TPDGGGGVFGLRIFNSDGTPCARSGNGIRVFARYLMDHGYAGADDFTIRTDAGPTAVRVL 123

Query: 112 RD--GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
               G I + +G      + +        M R+   +   N         +S GNPH + 
Sbjct: 124 DRASGLIRLALGPMSSSSRDVGATGHDRPMLRETLRVDGENIEI----TCLSDGNPHCVV 179

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             E ++      + G  +A HP F   VN+   +V    ++    WERG G T A GS A
Sbjct: 180 VRE-NVTPELAHALGPRIAGHPAFPGRVNVEFVQVRDHATVRAEIWERGAGYTLASGSGA 238

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CA+  A+  L  T   V+V+M GG L +E   +  V +TG A +   G+ 
Sbjct: 239 CAAARAAQLLGLTGEKVTVEMPGGSLEVETARSGEVSVTGTAAQVATGRW 288


>gi|51244285|ref|YP_064169.1| diaminopimelate epimerase [Desulfotalea psychrophila LSv54]
 gi|50875322|emb|CAG35162.1| probable diaminopimelate epimerase [Desulfotalea psychrophila
           LSv54]
          Length = 297

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 35/296 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQD 57
           M+   + F KM G GN  + ID R            A +      +   D I+ I     
Sbjct: 4   MEKGALSFTKMSGAGNDFIFIDNREGAVPPAIRAKLAAHICPRMFSVGADGIIFIEKSSI 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSI 116
           A  D      N DGS  + CGNG RC  R+  SR       +F T+ GI+ A+   D ++
Sbjct: 64  A--DFSWDFYNADGSLAEMCGNGARCAARYAFSRGIAGAKMSFATLAGIIEAEVFADDTV 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174
            + M  P      + L         D                 ++ G PHA+ +V++   
Sbjct: 122 CLQMTAPEDYRSGLSLELGGTSCQVD----------------FLNTGVPHAVVYVDEVSE 165

Query: 175 ---LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229
              + +  +  +G ++  H  F   G N++        SL +RT+ERGV   T ACG+ A
Sbjct: 166 GQGIGNIPVQEWGRIVRNHDHFAPAGTNVNFVSRGEGNSLYVRTYERGVEDETMACGTGA 225

Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIEWH-----DNNHVFMTGEAKKEWEGKL 279
            A+ +     +     V++   GG  L I +            ++G A+  ++G+L
Sbjct: 226 VAAALCFSKKYGFASPVNIVSSGGEILSIAFKTGCPPQEAAPSLSGPARIIYQGEL 281


>gi|292655255|ref|YP_003535152.1| diaminopimelate epimerase [Haloferax volcanii DS2]
 gi|291370113|gb|ADE02340.1| diaminopimelate epimerase [Haloferax volcanii DS2]
          Length = 288

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 116/290 (40%), Gaps = 23/290 (7%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--------HFDQIMLI-HD 54
           + V F K  G GN   V+D      +  + A      +             D ++ +  +
Sbjct: 5   NTVPFEKFHGTGNDFFVVDADDPVPDRPAFARTHCDREAGITLSESERRGADGVLFLALE 64

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +       + ++  DGS    CGNG R    +   R        +T  G   A  +   
Sbjct: 65  SRYDPPRVVMTLVQPDGSVAAMCGNGARVAAAWAAERTGTNEVMIDTPAGTRRASLDGTD 124

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++V+MG P    + +PLA   + +D +         +       V+ G PHA+ FV+D 
Sbjct: 125 -VTVEMGAPSFAPRDVPLASDDELVDTE---------VEGLTVTAVNTGVPHAVAFVDDV 174

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233
               DL S    +    +F EG N+++A          RT+ERGV   T +CG+ A A V
Sbjct: 175 -DDVDLESVAPPVRHASVFPEGANVTLASPDGEGGFRQRTFERGVEGETQSCGTGAVAVV 233

Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+  L +   +  V+V   GG L +   D     + G A  E +G+ DI
Sbjct: 234 AAAKRLGRVSGDDPVTVTPPGGALSVTVPDEGAALLGGPAVYEGDGEADI 283


>gi|222479106|ref|YP_002565343.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452008|gb|ACM56273.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239]
          Length = 309

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 121/313 (38%), Gaps = 43/313 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------------------ 42
           M +  V F K  G GN  LV+D         +         +                  
Sbjct: 1   MSTHAVPFEKYHGTGNDFLVVDADAEVVGDRAAFARTHCDRETGVDGGDFDAERNEESTG 60

Query: 43  NTHFDQIMLIHDFQD-ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET 101
               D ++ +   +        + ++  DGS    CGNG R V  +   R   + F  +T
Sbjct: 61  RRGADGVLFLSVEERFNPTRVVMTLVQPDGSTATMCGNGARVVALWAHDRTGDREFMIDT 120

Query: 102 IRGILVAKENRDGSISVDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160
             G   A  N D + +     EP  D   +PLAR       +     PV  L       V
Sbjct: 121 QAGTRRASVNADATAATIEMGEPTFDPARVPLARD------EPLIDEPVEGL---TVTAV 171

Query: 161 SMGNPHAIFFVE------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----- 209
           + G PHA+ FV+      D +   DL +    +    +F EG N+++A V    S     
Sbjct: 172 NTGVPHAVAFVDGGRSDPDGIDSVDLDAVAPPVRHADVFPEGANVNLASVVDDGSGDGPA 231

Query: 210 -LDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV-KMLGGGLLIEWHDNNHVF 266
            +D RT+ERGV   T +CG+ A A V A+  L   +   +V +  GG L +   D  H  
Sbjct: 232 LIDQRTFERGVEGETRSCGTGAVAVVAAARRLGLIDGESAVSRPPGGDLEVTVPDRGHAT 291

Query: 267 MTGEAKKEWEGKL 279
           +TG   +E+EG L
Sbjct: 292 LTGPVAREYEGTL 304


>gi|300712119|ref|YP_003737933.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3]
 gi|299125802|gb|ADJ16141.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3]
          Length = 288

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 113/300 (37%), Gaps = 42/300 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT------HFDQIMLIHDFQDAS 59
           V F K  G GN  L+        +  + AI     +           D ++++       
Sbjct: 3   VAFEKYHGTGNDFLIC-GADEAVDWGAFAIEHCDRETGIEVDGRRGADGVLVLSLS---G 58

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR------------------MKRKSFTFET 101
               +R+   DG     CGNG RC  ++   R                  +    F  +T
Sbjct: 59  ERVRMRLYQPDGGTAAMCGNGARCAAQWAARRLRRLDTRERPEAASGAGGIGADEFAIDT 118

Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             G   A+     +I ++MG P  +   +PLAR                 +       ++
Sbjct: 119 PAGERRARVGE-DTIEIEMGVPSFEPADVPLARE---------EPLIREDVEGWEVTALN 168

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG- 220
            G PHA+ FV+ D+   DL +    +    +F EG N+++A   S    D RT+ERGV  
Sbjct: 169 TGVPHAVVFVD-DVSTTDLGAMAPPIRHAEVFPEGANVNLASP-SERGFDQRTFERGVEG 226

Query: 221 LTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+ A A    +  +       VSV   GG L +   D+    ++G  + E  G++
Sbjct: 227 ETRSCGTGAVAIAAVAKRIGLVEGDRVSVSPPGGDLDVRVPDDGPAVLSGPVEFEGRGEV 286


>gi|288573423|ref|ZP_06391780.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569164|gb|EFC90721.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 270

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 24/283 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           ++F KM G GN  +VID  G     +            +   D ++++    ++  D  +
Sbjct: 1   MNFWKMNGNGNDFVVIDRDGMAYGQLVDLTRRVCRRRRSIGADGVLVVEPSDNS--DFRM 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEP 123
           R+ N DGSE + CGNG RC+ R+   R       +FETI GI+ A+      +++DM   
Sbjct: 59  RVFNSDGSEGEMCGNGARCIARYAFERGIAPFEMSFETIAGIMKARVEGS-FVNLDM--- 114

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-LYHYDLAS 182
                        D          P+    +   F++       I+  + D +   DL  
Sbjct: 115 ----------GEVDLGKGWFGRKVPMAGGEVEADFLIVGVPHLVIYLEDPDKVDREDLTR 164

Query: 183 FGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240
           +G        +F EG N++        SL + T+ERGV  LT +CG+ +CAS V +    
Sbjct: 165 WGRTLREDRGLFPEGTNVNFVGPVDRRSLKVWTYERGVEDLTDSCGTGSCASAVVAVRRL 224

Query: 241 KTNRAVSVKMLGGGLLIE--WHDN-NHVFMTGEAKKEWEGKLD 280
                ++V   GG  ++   + ++   + + GE     +G ++
Sbjct: 225 DLESPITVYNPGGVNIVTANFREDLCDIVLGGETVVVAKGTIE 267


>gi|256390821|ref|YP_003112385.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928]
 gi|256357047|gb|ACU70544.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928]
          Length = 293

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 14/279 (5%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQDAS 59
            K  G  N  +++        I    + AL         D ++ +        ++ Q A 
Sbjct: 13  TKGHGTENDFVIVPDPDGTLEIAPSRVAALCDRRAGIGADGVLRVVRTARMPGYEDQAAE 72

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            + F+   N DGS  + CGNG+R    F+T+R   K           V        +++ 
Sbjct: 73  AEFFMDYRNADGSVAEMCGNGVRVFALFVTARGLVKGGGVGEPVEFAVGTRGGIKRVTLR 132

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                 +   + +         +R  +    H   R+   V MGNPHA+ FV+       
Sbjct: 133 AT--GENTADVTVDMGIPVFPTERGAVTVDVHGTPRDAVDVDMGNPHAVVFVDSTDDAGS 190

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           L     +        EGVN+  A   +   L +R +ERGVG T +CG+ ACA ++A+   
Sbjct: 191 LYEMPTVSPTGVYA-EGVNVEFAADVAPRHLAMRVYERGVGETRSCGTGACAVMIAAARR 249

Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
                    +V +LGG L      + H+ MTG A   ++
Sbjct: 250 DAADAGTEYTVDVLGGRLRFVERADGHLEMTGPAALVFD 288


>gi|327405379|ref|YP_004346217.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823]
 gi|327320887|gb|AEA45379.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823]
          Length = 259

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 39/284 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           F K +G GN  ++ID R    D+++   I  L         D ++ I+    +  D  + 
Sbjct: 5   FVKYQGTGNDFVMIDNRSGEWDDLSISTIQKLCDRRFGVGADGLIKIN--SISGYDFEVD 62

Query: 66  IINCDGSEVQSCGNGMRC-VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS+   CGNG RC V       + +   +F  I G+  A +              
Sbjct: 63  YYNSDGSKS-FCGNGARCSVAFAHELGIIKDHVSFMAIDGVHEAVKKGSLVFLKMN---- 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
            D   I ++                        FV++ G+PH I F E+      ++   
Sbjct: 118 -DVSEIDVSHKE---------------------FVLNTGSPHFIHFTENVADFDIVSYGK 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +        EG+N++        S +++T+ERGV   T +CG+   A+ +A G  +   
Sbjct: 156 QIRYSDTYKQEGINVNAIHQLDSHSFEIKTYERGVEDETLSCGTGVTAAAIALGEKNLIV 215

Query: 244 RAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
                 VK  GG L + +   N    ++++ G A+  ++G+ ++
Sbjct: 216 GEFEYAVKSQGGNLAVRFTRENSKFTNIWLIGPAEVVFKGETNV 259


>gi|323484138|ref|ZP_08089508.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163]
 gi|323693217|ref|ZP_08107435.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
 gi|323402580|gb|EGA94908.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163]
 gi|323502700|gb|EGB18544.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673]
          Length = 290

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 16/282 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V F K   +GN  LV D       +  + I  +         D I+            ++
Sbjct: 4   VTFEKYHCMGNDYLVYDPNKNEMELNEENIRLICDRNFGVGSDGILA--GPYLDQEKMYV 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +I+N DGSEV   GNGM    ++        +      T      +    E     + + 
Sbjct: 62  KILNPDGSEVPKSGNGMGIFAKYLKDAGYVQKTSVSWMTISGEENVFYLNEEGT-RVKIS 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P      IP+     +M       G + ++       +S+GNPH + ++  ++    
Sbjct: 121 MGRPSFWSDEIPVTGERREMVNQTMMFGKIPYVT----TCLSLGNPHCVIWMS-EISKDQ 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           +   G        F E VN  +  V    ++ +  +ERG G T A GS ACA+  A+  L
Sbjct: 176 VCRIGEHSENADYFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAALRL 235

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              +  + V M GG L +E  ++  V+M GE      G + +
Sbjct: 236 GLADNNMYVHMPGGILEVEIKEDGTVYMVGEVGHV--GTITL 275


>gi|302874484|ref|YP_003843117.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
 gi|307690909|ref|ZP_07633355.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
 gi|302577341|gb|ADL51353.1| diaminopimelate epimerase [Clostridium cellulovorans 743B]
          Length = 321

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 13/288 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  ++ID      N T +     AI           D I+ +   +    
Sbjct: 3   IEMIKCHGTGNDFILIDEISYDYNFTEEDRKNLAIKLCDRKKAIGGDGILFVQKSEK--C 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
              ++IIN DGSE + CGNG+RCV +FL           ET++ + + ++ +D    V  
Sbjct: 61  VGKMQIINSDGSEAEMCGNGLRCVGKFLLETTGENKILVETMKAVYLVEKVQDIYKGVFT 120

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            E  +D     + +        + F         +R    +S+ NPH + FVE+      
Sbjct: 121 DEITIDSIDFNVDSLPLVYEKENLFFEKLTALSDIREFTAISITNPHLVSFVEEIEKEEL 180

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
            A          +  +GVN++  +    +S+ ++T+ERGVGLT +CG+   +S +A+   
Sbjct: 181 KAVGIKANDTKELLPKGVNVNYVKEIDEDSIYVKTYERGVGLTKSCGTGMVSSSIATLLK 240

Query: 240 HKTNRAV-SVKMLGGGLL--IEWHDNN--HVFMTGEAKKEWEGKLDIK 282
           H  N    +V   GG +   +  +++    V M G A   ++  + I+
Sbjct: 241 HGINEKTYNVYNDGGMIQCKVTKNEDGIFRVMMRGNATFIYKSTISIE 288


>gi|116873454|ref|YP_850235.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123463988|sp|A0AKC4|DAPF_LISW6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|116742332|emb|CAK21456.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 328

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 19/312 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDN--THFDQIMLIHDFQ 56
           +++ F K+ G  N   ++D    H         +D    L    +     D I+ +    
Sbjct: 2   AIIHFTKVHGSQNDFFLVDEEENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  ++      
Sbjct: 62  KAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVRKATSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +   K  P +          F+              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFNPESLPMYVGVEKLFNQVIPELDEELAFSAVSVPNPHLITFVDQTV 181

Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                     +   +++P F +GVN+S  +  + +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQEKLASFLNSENPYFPDGVNVSFVKRLNEDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL---DIKTG 284
           +    L +      ++V   GG + +    +      + + G A     G +   DI T 
Sbjct: 242 LIKKMLDQDTLETPLNVYNDGGRVQVTAKKDETGDISLQLIGNATFVSTGSVRYDDIVTE 301

Query: 285 KWIKKNEDDEAY 296
              +   +   Y
Sbjct: 302 LTNEATVEQAQY 313


>gi|257068241|ref|YP_003154496.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810]
 gi|256559059|gb|ACU84906.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810]
          Length = 282

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/282 (23%), Positives = 105/282 (37%), Gaps = 18/282 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD--- 61
           +DF K  G  N  +V+D       + + A+ AL+        D ++     + A +D   
Sbjct: 5   IDFTKGHGTENDFVVLDDPEGALELEAVAVAALADRRAGIGGDGVIRCVRSRCAGIDAPP 64

Query: 62  ----AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                F+   N DGS  + CGNG+R     L       +  FE +    V   +    I 
Sbjct: 65  DAPEWFMDYRNADGSLAEMCGNGVRVFAAHLRRTGHITTGRFEILTRAGVRTVD----IL 120

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
            +   P  DW    +          +                V MGNPH + F+  +L  
Sbjct: 121 EEPASPGGDWS---VRVGMGASRSTQRARTVEIAGVRLTATDVDMGNPHTVVFLPPELAL 177

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
             L       A  P  + G N+ + R      + +R  ERGVG T +CG+   A  VA+ 
Sbjct: 178 EGLD-LTRRPALEPEPARGANVELVRERGPRHVAMRVHERGVGETRSCGTGVAAVAVAAA 236

Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
                      +V + GG L + W +   V +TG A+   +G
Sbjct: 237 LRAGDESRAPWTVDVPGGRLQVGWTEEGEVTLTGPARLVADG 278


>gi|229087449|ref|ZP_04219583.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44]
 gi|228695871|gb|EEL48722.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44]
          Length = 268

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 135/265 (50%), Gaps = 18/265 (6%)

Query: 25  GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84
                + ++ ++ +  +     D ++LI   + A V   +R+ N DGSE +SCGNG+RCV
Sbjct: 8   EEELALVAEKVSNI--NTGIGADGMILICPSEVAPV--KMRMFNSDGSEGKSCGNGLRCV 63

Query: 85  VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137
            ++      +    FT ET+ GI+ A+   +      + +DMG P L    +P+    + 
Sbjct: 64  AKYAYEHKLVAETVFTIETLAGIVTAEVTVEEGIVTLVKIDMGAPRLTRAELPMLGEGET 123

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
              R+ F      ++F      VSMGNPHA+ FV+ D+    L + G +L  H MF E V
Sbjct: 124 PFIREDFLYNNHRYVFTG----VSMGNPHAVIFVD-DVEEAPLTTLGPVLETHEMFPERV 178

Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255
           N+    + +   ++ R WERG G+T ACG+ ACA+VVA+    K  R   ++V + GG L
Sbjct: 179 NVEFIEIVNGNEMNFRVWERGSGITQACGTGACAAVVAAVLNEKMKRGEEITVHLAGGDL 238

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280
           +I W +  +V M G A+    G  +
Sbjct: 239 MIAWAEEGNVLMKGPAEVICRGVYE 263


>gi|289523890|ref|ZP_06440744.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502546|gb|EFD23710.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 280

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 31/287 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M+ FAK  G GN  ++I+ +      D ++  A        +   D ++++   +  + D
Sbjct: 1   MISFAKAHGNGNDFIIIENKEGTYSDDRLSDLAKKICRRKTSLGADGVLVLEGSK--TFD 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDM 120
            ++R+ N DGSE + CGNG RC+ R+   +   K   TFET  G + A  N         
Sbjct: 59  FYMRLFNADGSEGEMCGNGARCIARYAFEKGHAKSDMTFETKAGPIRASVNPP------- 111

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178
                 W  I +    D  +     I           F V  G PH + F     D+   
Sbjct: 112 ------WATIDM-GEIDVSNLKEGKINAFGKEIPYVAFYV--GVPHCVLFFPGFRDIPRD 162

Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
            L S    + +   +F EG N++ A   + + +   T+ERGV   T +CG+ + A  +AS
Sbjct: 163 SLLSLARHIRRKGAIFDEGANVNFAER-NKDCIGAMTYERGVEDFTLSCGTGSIACCLAS 221

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVF---MTGEAKKEWEGKL 279
             L  +  A+ VK  GG   +     +  VF   ++G+A    EG +
Sbjct: 222 HLLFGSPLAMKVKNPGGVNKVALRLTSEKVFEASLSGKALIVAEGLI 268


>gi|114777740|ref|ZP_01452700.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1]
 gi|114551956|gb|EAU54490.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1]
          Length = 235

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 96/278 (34%), Gaps = 48/278 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           + F KM+  GN  +V++         T   +  ++        DQ++++     A  DA 
Sbjct: 4   LPFYKMQAQGNDFVVLNGLTSTLPEFTEAWVRRITERRYGIGCDQLLVLEQSDKA--DAA 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           IRI N DGSE  +CGNG+RCV + L   + ++         I+ A+              
Sbjct: 62  IRIFNNDGSEAANCGNGLRCVGQLLIELLGKEFVLIALKDRIVRAEAGI----------- 110

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
                                           N   V MG    I   +  +        
Sbjct: 111 --------------------------------NGICVEMGPATVINSTDAHVDIDIGNQH 138

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
                    F   +N+ I        + +   ERG G T ACGS ACA+  A        
Sbjct: 139 RVFFEATEAFPSDLNVEIVTGQIANHVYIDIIERGAGRTLACGSGACATAAAIWYSEGEV 198

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           R ++++M GG + +     N V + G   + + G   I
Sbjct: 199 RPLTIEMPGGTVTVSGCAKN-VRLEGPVTQTFSGVFTI 235


>gi|88855438|ref|ZP_01130102.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1]
 gi|88815345|gb|EAR25203.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1]
          Length = 292

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 105/302 (34%), Gaps = 34/302 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV-- 60
           + ++F K +G GN  ++         +T   + A+         D I+      +  V  
Sbjct: 2   ATLNFTKGQGTGNDFVLFSDPEGQLELTPQQVAAICDRRFGVGADGILRAVRSSNIDVGA 61

Query: 61  ---------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                    + F+   N DG+  + CGNG+R    +L          FE    + V   +
Sbjct: 62  AALAEDADAEWFMDYRNADGTAAEMCGNGIRVFAHYLAENGFVD---FEPGDTLPVGTRS 118

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               +  +M     D            +D     +        R    +++GNPH +  +
Sbjct: 119 GVRDVQRNMAGYQAD-------MGRWSLDGGEPLVRAKELDVARPGLGINVGNPHVVVAL 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAAC 225
             D    D      +    P+   G N+               S+ +R  ERG G T +C
Sbjct: 172 -ADESELDHVDLNYIPVIDPLPEHGANVEFVVPAEPLVKDGVGSIRMRVHERGSGETLSC 230

Query: 226 GSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLD 280
           G+ A A+ +A              V + GG +++      D  HV ++G A+  + G L+
Sbjct: 231 GTGAVAAALAIRHYAGAGAPNQWRVAVPGGTVVVRMFPTEDGEHVSLSGPAELVYTGSLE 290

Query: 281 IK 282
           + 
Sbjct: 291 LA 292


>gi|288935266|ref|YP_003439325.1| diaminopimelate epimerase [Klebsiella variicola At-22]
 gi|288889975|gb|ADC58293.1| diaminopimelate epimerase [Klebsiella variicola At-22]
          Length = 288

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 119/279 (42%), Gaps = 13/279 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           + F K  G+GN  LV   R   + ++++ +  L         D +++        ++  +
Sbjct: 4   LHFHKYHGLGNDYLVC-HRDVAEQLSNEHVQMLCHRHYGVGSDGLLI---DSGDQINPTL 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN-RDGSISVDMG 121
           RIIN DGSE +  GNG+R   R+L    R+  + F   T  G +    +     ISVDMG
Sbjct: 60  RIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVDMG 119

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
               +   +P   +  +       +         +  +VSMGNPH +  V+  L    + 
Sbjct: 120 RANFNPAALPALVNLPEAVNYPLPLAD----ETLSVVLVSMGNPHCVVLVDK-LDLAQVH 174

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  H +F +  N+    V    +L +  WERG G T A GS++CA+  A   L  
Sbjct: 175 RLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRLGM 234

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  V V M GG L I +  +  V M G   K     LD
Sbjct: 235 VDDWVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273


>gi|315641452|ref|ZP_07896524.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952]
 gi|315482740|gb|EFU73264.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952]
          Length = 272

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 31/284 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-NTHFDQIMLIHDFQDASV 60
           + F KM+G GN  +VID      +++++ +      +     +   D +M++   Q+   
Sbjct: 3   IPFYKMQGAGNDFIVIDN--QKLHLSNEQLVALTKKICQRRLSVGSDALMVVDVPQNTG- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           D  +   N DG+E + CGNG RC+ R+   + +       ET+ G + A    + +  V 
Sbjct: 60  DVRMIFFNADGTEAEMCGNGARCLARYAYENDLASDKMLIETVAGDVPAWRLDERTYKVQ 119

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177
           + EP ++   +P            +    V+++ L NP     G PH +   +       
Sbjct: 120 LNEPTVEQFDLP------------YENISVDYIELGNP-----GLPHLVVRCDALATEPL 162

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236
               SF   L       +G N+++  V     + LRT+ERGV   T ACG+ A A+  + 
Sbjct: 163 ASFESFARELRYWDYLPKGANVNLYAVDDQGQIVLRTFERGVEGFTYACGTGAGATAYSL 222

Query: 237 GCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
                     VS++ LGG L ++   +  +F+ G+     EG +
Sbjct: 223 VKKGIVPSTTVSLQTLGGVLQVQVQKDQ-LFLIGDTNIVVEGSI 265


>gi|297626488|ref|YP_003688251.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296922253|emb|CBL56825.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 277

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 99/281 (35%), Gaps = 24/281 (8%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML-----IHDFQDASV 60
           +FAK  G  N  +++  R     ++   +  L         D ++               
Sbjct: 5   EFAKGHGTMNDFVLLKDRTNSTELSPQDVRYLCDRRAGIGGDGVIRAVWAKYMPSWTGDP 64

Query: 61  D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
           +  F+   N DGS  + CGNG+R    FL           +                   
Sbjct: 65  NMWFMDYRNSDGSVAEMCGNGLRVFGHFLLDENLADGPDIQVATRAGQRDVAEMNDELFR 124

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            G   +     P   S D ++ +                 V +GNPHA+ F+  D+    
Sbjct: 125 AGIGHVQVASQPTHVSLDGVEYE--------------ATTVDVGNPHAVVFLPADVDLES 170

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA-SGC 238
           L           ++  G N+   RV S  SL +R +ERG G T +CG+   A+  A    
Sbjct: 171 LDLSHPPRFDTRVYPAGTNIEFVRVHSDRSLSMRVFERGSGETMSCGTGVVATAAAQGAR 230

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           L +  R   V + GG L +E  D++   +TG A     G +
Sbjct: 231 LGEQGRF-GVDVPGGHLEVEL-DDSMAHLTGPAVIVAHGSV 269


>gi|145593993|ref|YP_001158290.1| diaminopimelate epimerase [Salinispora tropica CNB-440]
 gi|145303330|gb|ABP53912.1| diaminopimelate epimerase [Salinispora tropica CNB-440]
          Length = 280

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 103/289 (35%), Gaps = 30/289 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM-LIHDFQDA----- 58
           ++F K  G GN  +++        +T D + A+         D ++ ++   +       
Sbjct: 1   MEFTKGHGTGNDFVILPDPDGTLELTPDLVAAVCDRRQGIGGDGVLRVVRAARHPEGAAL 60

Query: 59  --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
             + + F+   N DGS  + CGNG R  VR+L               G       R G +
Sbjct: 61  AGAAEWFMDYWNSDGSVAEMCGNGARVFVRYLLEAG------LAVPSGAAFPVATRAGLV 114

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
              +           LA    +       I  ++ L L     V +GNPH +  V   L 
Sbjct: 115 RARVEGEE-------LAVEMRRPRLAGASIAVLDGLAL-PGTAVDVGNPHLVCPVPAGLE 166

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACA 231
              L           +F  GVN+               + +R +ERG   T +CG+ ACA
Sbjct: 167 LAALDLNRAPEIDPVIFPTGVNVEFITPGDPTGGTDGYVRMRVYERGSAETRSCGTGACA 226

Query: 232 -SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + V      +    V+V + GG L++        ++ G A     G++
Sbjct: 227 VAAVVLRDAGRDTGVVAVDVPGGRLVVT-QTAQACWLAGPAVLVATGEV 274


>gi|256832281|ref|YP_003161008.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603]
 gi|256685812|gb|ACV08705.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603]
          Length = 304

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 108/309 (34%), Gaps = 34/309 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQ------ 56
           + + F K  G  N  +++D      ++T + + AL         D ++ +   Q      
Sbjct: 2   TTLPFTKGHGTRNDFVILDDPQGAIDLTEELVRALTDRRSGVGADGVIRVMRAQLSEEVR 61

Query: 57  -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILV 107
                D  V+ F+   N DGS    CGNG+R   RFL  R        ++   T  GI  
Sbjct: 62  DLVTRDPRVEWFMDYRNADGSIASMCGNGVRVFARFLEERKGVTALGAAYPIATRAGIRT 121

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            ++   G        P           +          I    H   R    VSMGNPH 
Sbjct: 122 IRKI--GDWYEVGMGPAQFLDD---TAARTTGHDATVTIPMQPHEPARPGISVSMGNPHT 176

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE---------SLDLRTWERG 218
           +  +  D                P+   G N+       ++            +R +ERG
Sbjct: 177 VVAL-PDHDTLAELDLTRSPGVDPVPVHGTNVEFVVPDGVDTAADGTVVGRASMRVYERG 235

Query: 219 VGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           VG T +CG+ ACA+  A       +     ++ + GG + +     + V + G A+   +
Sbjct: 236 VGETQSCGTGACAAAAALHRWAGESSPRTWTITVPGGRVQVTL-GTHEVLLAGPAELVAD 294

Query: 277 GKLDIKTGK 285
           G + I +  
Sbjct: 295 GHITITSLN 303


>gi|149179746|ref|ZP_01858251.1| diaminopimelate epimerase [Bacillus sp. SG-1]
 gi|148851938|gb|EDL66083.1| diaminopimelate epimerase [Bacillus sp. SG-1]
          Length = 330

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 15/290 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  L+ID      N +       AI           D I+ + D      
Sbjct: 3   INLIKCHGSGNDFLLIDEITETYNFSEKDRQNLAIALCDRKKGIGADGILFVLDSDR--C 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +R+ N DGSE   CGNG+RCV R++T    +   T ET++  L           +  
Sbjct: 61  DGKMRVFNADGSEASMCGNGLRCVGRYVTELKNKSDITIETMKADLKISSEPSIFAEIPT 120

Query: 121 GEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYH 177
            +  +   L  L     +   +                  V++ NPH I  VE++  L +
Sbjct: 121 FKVEISPVLFELKHLPMNIDKQTLIDEKVPEISAALTFTAVAVPNPHLISIVENEHILSN 180

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
              +   ++   + +F +GVN+S  +    + + +RT+ERGVG T ACG+A  AS + + 
Sbjct: 181 EQKSISESVNGPNNLFPDGVNVSFVQSLGTDGIYVRTFERGVGFTNACGTAMSASTLVTC 240

Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282
                   + + V   GG + +  H N+  F   + G A      KLD+ 
Sbjct: 241 LSGLNEFEKEIDVFNNGGKVRVIVHKNDEQFSMDLIGNATYTSRYKLDLD 290


>gi|309777895|ref|ZP_07672839.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914343|gb|EFP60139.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 273

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 11/278 (3%)

Query: 5   MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+   K  G GN  ++ D  R  + +I    +           D  +L+           
Sbjct: 1   MIPVTKYHGCGNDFIITDWERVMNCDIEDFVVKVCDRHTGIGADGCILVKQHP-----LE 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DGS    CGNG+RC  ++         + +  ET+ G             V + 
Sbjct: 56  MVFYNGDGSRAPMCGNGIRCFAKYCYDERIETAEEYDVETLAGRKHVTRVSLDLFQVRID 115

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +  W   P +   +                  + +   M   H + FV  D + +D +
Sbjct: 116 --MGTWDDDPKSIQVEGQSEPIMDYKLTVGDTSVSVYSFFMSTVHTVVFVS-DAFAFDYS 172

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G  +  HP++ E  N++   +  + +L + T+ERGVG+T ACG+ ACA+   +     
Sbjct: 173 DIGKKICHHPLYKEQTNVNFVEIADVNTLRMVTYERGVGMTLACGTGACAAARIAYEKKG 232

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + V +  G L IE  D  HV M G A++  +G+ 
Sbjct: 233 CASKLRVLLKRGELHIEIDDQQHVHMFGPAERILKGEF 270


>gi|162456438|ref|YP_001618805.1| hypothetical protein sce8155 [Sorangium cellulosum 'So ce 56']
 gi|161167020|emb|CAN98325.1| dapF [Sorangium cellulosum 'So ce 56']
          Length = 265

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 117/290 (40%), Gaps = 33/290 (11%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59
           M+ ++V F K EG+GN  ++++       +T++A   L         D +++I   Q   
Sbjct: 1   MKENVVRFEKWEGLGNDFILVEA----VPMTAEAARRLCDRRFGIGADGVLVIEREQ--- 53

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118
               +++ N DGS  + CGNG+RCV  +L SR   +K+ T  T  G    +  R G    
Sbjct: 54  --PRMQVWNADGSRPEMCGNGIRCVAAYLVSRGTPQKAVTIATDAGDKRCEVTRAGDRFD 111

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                        L         +   +  +          V +GNPHA+ F        
Sbjct: 112 V------------LVGMGRARMGETLVVTALGAE--HRFACVDVGNPHAVTFDPYTEDA- 156

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLE---SLDLRTWERGVGLTAACGSAACASVVA 235
            +   G ++A  P     V     R         +D+  WERGVG T ACG+ ACA   A
Sbjct: 157 -IDELGPIVATTPAEGINVEFCRVRPAEHGEAARIDVTVWERGVGRTLACGTGACAVAAA 215

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282
           +    +      + V + GG L I     +  + M G A++ + G++ I 
Sbjct: 216 ACAQGRAPYGAPLRVALPGGSLRITVAPGSLELLMQGPARRAFSGEVVIA 265


>gi|330805715|ref|XP_003290824.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum]
 gi|325079034|gb|EGC32655.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum]
          Length = 361

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 124/344 (36%), Gaps = 67/344 (19%)

Query: 6   VDFAKMEGIGNKILVID----MRGCHDNITSDAINAL--------STDDNTHFDQIMLIH 53
           V F+KM G GN  +  +     R    + +  ++  L                DQ+++ +
Sbjct: 12  VKFSKMHGAGNDFVCFETNKVERINSFDKSEISLKELKDISLILADRKYGVGCDQLIICN 71

Query: 54  DFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-------------- 97
           +      S    + +IN DG +   CGNG+RC  +F+                       
Sbjct: 72  NNPKVEKSAHYEMIVINSDGQQATMCGNGVRCFSKFVIDNKIESKSLNGTPKKDETTSEI 131

Query: 98  ----------TFETIRGILVAKENRDGSISVDMGEP----ILDWKL-----IPLARSFDK 138
                          +            + V+MG         WK      +   +S DK
Sbjct: 132 EQKVETLAGLIITYPQIYHHLNTRNVMMVKVNMGNALVLKTNKWKESYGTVLNNKQSIDK 191

Query: 139 MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL----------- 187
                     + +       +VSMGNPH I F++ ++    L                  
Sbjct: 192 SAYLETVELNLPNCKQLECVLVSMGNPHCIVFLQRNIELGYLNKEECSNLKTMKIEDIAV 251

Query: 188 --AKHPMFSEGVNLSIARVTSLESLDL----RTWERGVGLTAACGSAACASVVASGCLHK 241
              KHP+F++  N+     ++   L      R +ERG G T ACG+ A A  VAS  +  
Sbjct: 252 ALQKHPLFTDSCNVEFVYQSNENKLSNTVISRVYERGAGETLACGTGASAVAVASILMGH 311

Query: 242 TNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282
            +    V+  M GG LLI+W   N +VF TG A   +  ++DI+
Sbjct: 312 CDSEKEVTCSMPGGDLLIQWGSGNKNVFKTGPACTVFSSQIDIE 355


>gi|269791681|ref|YP_003316585.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099316|gb|ACZ18303.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 273

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 30/287 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           V+F K++G GN  L +D          ++   A+ A     +   D ++++   + A   
Sbjct: 5   VEFFKVDGNGNDFLFVDDLDGRLSSRFDLPELAVRACGRRTSVGADGLLVMGWDRGA--- 61

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +RI N DGSE   CGNG RC         ++     F T  G + A  +RD ++S+ M
Sbjct: 62  YRMRIFNADGSEADMCGNGARCFAMMLRWLGLEDPEMEFLTNVGPVRAHVHRDSTVSLHM 121

Query: 121 -GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178
              P  +  L  ++    +++ + ++              + +G PH + + +  DL   
Sbjct: 122 GFNPFGEGALFRVSERVGEVEAEMWY--------------LHVGVPHLVLWADRWDLRED 167

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
              S G      P F  G N++     S   L   T+ERGV  LT +CG+ ACA   ++ 
Sbjct: 168 GFRSLGARYRHDPRFPRGTNVNFVSP-SEGGLTCITYERGVEDLTLSCGTGACAVAASAV 226

Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281
                   V V+  GG  L+E           + G  +    G L +
Sbjct: 227 MRG-MGSPVRVESPGGYNLVEVGLEDLGARYRLRGPVRVSARGVLYV 272


>gi|20093872|ref|NP_613719.1| diaminopimelate epimerase [Methanopyrus kandleri AV19]
 gi|24418365|sp|Q8TY71|DAPF_METKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|19886804|gb|AAM01649.1| Diaminopimelate epimerase [Methanopyrus kandleri AV19]
          Length = 279

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/293 (22%), Positives = 108/293 (36%), Gaps = 39/293 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61
           + F K+ G  N  +++D         SD    A  A         D ++ I   +     
Sbjct: 1   MQFWKVHGARNDFVLVDETEEEVVPESDKPDFARWACDRRSGVGADGVVFI---RSDPPS 57

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +RI N DGSE + CGN  RCVV+++T           T+ G    +        + + 
Sbjct: 58  VEMRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRVEVQGG---WIAVE 114

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-LYHYDL 180
            P  + K +                       +   + V  G PH +   E D ++ +  
Sbjct: 115 VPEAEIKKV-----------------------VELGYEVDAGVPHFVRLTERDPIHDFGG 151

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +            +G         S++ L +RT+ERGVG T ACGS   A+ +    + 
Sbjct: 152 LTDEAKTIFSEYEPKGGVNVTYAAPSVDELRVRTFERGVGWTPACGSGVVAASLVYSEIF 211

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
                VSV+  GG L +   D     + G A+  ++G+L    G W +  +  
Sbjct: 212 GPFEEVSVRTAGGCLRVSLSDGP--LLIGRAEIVYKGELR---GDWRENTDHQ 259


>gi|29829703|ref|NP_824337.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680]
 gi|15824186|dbj|BAB69347.1| putative diaminopimelate epimerase [Streptomyces avermitilis]
 gi|29606812|dbj|BAC70872.1| putative diaminopimelate epimerase [Streptomyces avermitilis
           MA-4680]
          Length = 307

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 12/275 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-HDFQDASVDAFI 64
           +F     +GN  +V+D RG        A+  L         D ++       +A     +
Sbjct: 31  EFFTYHALGNDYVVVDPRGSDFTPGPAAVRLLCDRHFGVGADGVLFGPLGAPEAGEPVRL 90

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           R+ N DG+E +  GNG+R     L           E             G + V + +  
Sbjct: 91  RMFNSDGTECEKSGNGLRMFALHLAETYGEPWSGDEEF-----PLRTAAGDVPVRILDLA 145

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + + R       +   +G            V  GNPHA+  +  ++        G
Sbjct: 146 SGTVQVGMGRPEFGATGESLDVGGR----RLAVTSVHNGNPHAVVPL-AEISAGLARELG 200

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
            L+A H  F    N+    +    ++ +  +ERG G T A GS+ACA+  A+  L  T  
Sbjct: 201 PLIAGHTRFPGRTNVQFLAIVDRRTIAIEVYERGAGYTLASGSSACAAAAAAHALGLTGP 260

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            V V+M GG + +    +  V MTG A++   G+ 
Sbjct: 261 DVEVRMPGGRIDVSIAADGSVSMTGTAERISSGRF 295


>gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
 gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
          Length = 1430

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 57/329 (17%)

Query: 6    VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
            +DFAKM+  GN  +V +       N    ++           D ++LI     A  DA +
Sbjct: 1106 LDFAKMQSTGNDFIVFNAMEQEIINPEGLSVRLCDRRTGIGADSLVLITKS--AVADAGM 1163

Query: 65   RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---------------FTFETIRGILVA- 108
            R  N DGSE    GN + CV ++L                        T ET  G+    
Sbjct: 1164 RFFNRDGSEGNMAGNAICCVAKYLYDNDINGIAARAASAVGTHFTAEITVETASGVKRLL 1223

Query: 109  ---KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDR---------------------- 143
               +  +  S+ VDMG+P  D   IP   +   +                          
Sbjct: 1224 AYTQSGKVSSVRVDMGKPEFDPAKIPAKLAASGVTGTPDGISIIGGAAVPSYPCSAENVA 1283

Query: 144  ---------FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
                      H             V+++G PH + F    +   D+   G L   +P F 
Sbjct: 1284 SGKLPEKAVVHAELSAAGESYRAAVLAVGTPHCVLFSSF-VDKIDVPGVGPLFENNPAFP 1342

Query: 195  EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLG 252
              +N    RV    SL +R WERG G T ACG+ ACA+ VA+        +  ++VK+ G
Sbjct: 1343 RRINTEFVRVAGRNSLKMRVWERGNGETPACGTGACAAAVAAVLNGFCPLDENITVKVRG 1402

Query: 253  GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            G L++ +  +  V++TG A   + G+++I
Sbjct: 1403 GDLIVNYTGD-TVYLTGGAALVYTGEIEI 1430


>gi|58584775|ref|YP_198348.1| diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497789|sp|Q5GSB8|DAPF_WOLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|58419091|gb|AAW71106.1| Diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 259

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 99/261 (37%), Positives = 143/261 (54%), Gaps = 17/261 (6%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
           M G GN  ++ID R    N  +     ++  +    DQI++I +   ++ D F+ I N D
Sbjct: 9   MYGTGNNFVIIDSRS--INNLNWNYREIANQN--GCDQIIVITNS--SAADCFMHIYNAD 62

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL 129
           G EV+ CGN  RCV   + S    +  T E   + IL   +    SI V+MG+P+  W  
Sbjct: 63  GGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKVGGRSIKVNMGKPLFKWHE 122

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           IPL+   D +        P+    L++P  V++GNPH +FFV+ ++    L S G  L K
Sbjct: 123 IPLSAKCDPL------HLPIELEMLKDPVAVNIGNPHMVFFVD-NISEIPLQSLGPKLEK 175

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSV 248
           H +F + VN++IA+V     + LR WERG G+TA+CGSAACA+++AS        R  SV
Sbjct: 176 HTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSV 235

Query: 249 KMLGGGLLIEWHDNNHVFMTG 269
            + GG LLIEW DN  +FMTG
Sbjct: 236 NLPGGKLLIEWPDN--IFMTG 254


>gi|213024498|ref|ZP_03338945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 204

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 9/209 (4%)

Query: 76  SCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
            CGNG RC  RF+  +    ++     T  G +V     D  + V+MGEP  +   +P  
Sbjct: 2   QCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVPF- 60

Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
               + ++                 VVSMGNPH +  V+ ++    + + G +L  H  F
Sbjct: 61  ----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVETLGPVLESHERF 115

Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253
            E  N+   +V   E + LR +ERG G T ACGS ACA+V            V V++ GG
Sbjct: 116 PERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGG 175

Query: 254 GLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            L I W    H ++MTG A   ++G + +
Sbjct: 176 RLDIAWKGPGHPLYMTGPAAHIYDGFIHL 204


>gi|296117718|ref|ZP_06836302.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969449|gb|EFG82690.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306]
          Length = 298

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 22/295 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ--- 56
           + ++ + FAK  G  N  ++++      ++ +D + AL         D ++ +   Q   
Sbjct: 4   ISTASLPFAKGHGTENDFIIVNDPEGKISLDADRVAALCDRRAGIGADGLLRVIRAQALV 63

Query: 57  -----------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRG 104
                       A  D F+   N DGS  + CGNG R    ++ ++            +G
Sbjct: 64  DNGEIDELAEGIAGDDWFMDYRNADGSIAEMCGNGTRVFAHWVVAQGLVSVPPRGAAGKG 123

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           I      R G+  V +         + +     ++             F      V MGN
Sbjct: 124 ISFTVGTRAGAKPVTVHACDSRRADVSVEMGVPEVMG---LSTAQMAGFFYAGLGVDMGN 180

Query: 165 PH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           PH A      D            +     F  G+N+ +        +++R +ERGVG T 
Sbjct: 181 PHLAATIPGLDAEALAELVLEQPVYDAEFFPHGLNVEVVTPLKDGEVNMRVFERGVGETR 240

Query: 224 ACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           +CG+    A+V A         +V+V + GG + +E  ++    + G ++    G
Sbjct: 241 SCGTGTVAAAVSALADAGAVTGSVTVNVPGGQVQVEVREDGS-TLRGPSEIVATG 294


>gi|288920756|ref|ZP_06415056.1| diaminopimelate epimerase [Frankia sp. EUN1f]
 gi|288347832|gb|EFC82109.1| diaminopimelate epimerase [Frankia sp. EUN1f]
          Length = 311

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 120/305 (39%), Gaps = 37/305 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI--------HDFQ 56
           V + K  G GN  +++       +++   + A+         D ++ +            
Sbjct: 11  VRYVKGHGTGNDFVILPDADGDLDLSVQLVRAICHRGTGVGADGVLRVVLVAAEPAAAAY 70

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDG 114
             +   F+   N DGS  + CGNG+R   R+L              T  G+        G
Sbjct: 71  LGAARWFMDYRNADGSIAEMCGNGVRVFARYLVDAGYEMPGSLVIATRAGLRSVDVPPAG 130

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +SVDMG P      +P+                           VSMGNPHA+ F + D
Sbjct: 131 DVSVDMGPPEFASGTVPVTV----------------VGREFAAVGVSMGNPHAVCFAD-D 173

Query: 175 LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           L   +LA     +   P   F +GVN+ +    S + + +R +ERGVG TA+CG+ ACA 
Sbjct: 174 LGPSELARLDLGVPVFPAEAFPDGVNVEVVVP-SADGVAMRVFERGVGETASCGTGACAV 232

Query: 233 VVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
            VA            V V + GG L ++W +   V + G A    +G L     +WI++ 
Sbjct: 233 AVAWAARVGGTPPSEVLVDLPGGRLTVDWRET-TVILRGPAVLVSDGVLRP---EWIRQA 288

Query: 291 EDDEA 295
               +
Sbjct: 289 TGVAS 293


>gi|89097875|ref|ZP_01170762.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911]
 gi|89087377|gb|EAR66491.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911]
          Length = 327

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 19/286 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA-----INALSTDDNTHFDQIMLIHDFQDASV 60
           ++  K  G GN  L+ID        T +      I     D     D I+       A  
Sbjct: 3   IEILKCHGSGNDFLLIDEISKDYGFTEEQRRELAIALCRRDSELGADGILFTMKSDKA-- 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA +R+ N DGSE   CGNG+RCV R++      K    ET++  L  ++  D    +  
Sbjct: 61  DARMRVFNADGSEASMCGNGLRCVARYVCELFGLKEAIIETMKADLKVEKRPDIFPEIPT 120

Query: 121 GEPILDW-----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
               +       + +PL  + + +  ++ +    +  F      V   +  A+   +D  
Sbjct: 121 YLVEISPVSFQIRDLPLILNQETLKNEKINSLSDSLHFT--ALAVPNPHLIAVCSKDDIQ 178

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                    ++   + +F +GVN+S  +    ES+ +RT+ERGVG T ACG+A  AS + 
Sbjct: 179 SDLQKNISEHVNGPNELFPDGVNVSFIKPLKEESIYVRTFERGVGFTNACGTAMSASTLV 238

Query: 236 SGCLH--KTNRAVSVKMLGGGLL-IEWHDNN--HVFMTGEAKKEWE 276
           S      K  R V V   GG +  I    N    + + G A   + 
Sbjct: 239 SCLQGMNKLERPVDVYNNGGKVQCIAHESNGGYTIDLIGNATYMYR 284


>gi|86742196|ref|YP_482596.1| diaminopimelate epimerase [Frankia sp. CcI3]
 gi|86569058|gb|ABD12867.1| diaminopimelate epimerase [Frankia sp. CcI3]
          Length = 302

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 115/292 (39%), Gaps = 35/292 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           + F K  G GN  +++       ++T+D + AL         D ++ +            
Sbjct: 18  LRFVKGHGTGNDFVLLPDPDGDLDLTADLVRALCDRRTGIGGDGVLRVVLCAAVPEAAGL 77

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDG 114
                 F+   N DGS  + CGNG R   R+L      +   F   T  G+ + +   DG
Sbjct: 78  AGRARWFMDYRNADGSVAEMCGNGARVFARYLVDAGYAQPGRFHVATRAGLRLVEAAVDG 137

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-ED 173
            ++VDMG P                  D                 VSMGNPHA+ F  + 
Sbjct: 138 DVTVDMGPPR---------------IIDGPGAPVTVADRDFTATAVSMGNPHAVCFAGDL 182

Query: 174 DLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D+            +  P+ F +GVN+ I        + +R +ERGVG TA+CG+ ACA 
Sbjct: 183 DVAGLRRLDLTRPPSFSPVDFPDGVNVEIVVDR-PAGVAMRVFERGVGETASCGTGACAV 241

Query: 233 VVA-----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            VA               V V + GGGL++ W     V + G A+  ++G L
Sbjct: 242 AVAWAARRGARPAGAPVEVEVDVPGGGLVVIWQP-ETVLLRGPAELVFDGVL 292


>gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726]
 gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726]
          Length = 281

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 97/295 (32%), Gaps = 33/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++I+       ++ + + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVIIEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
                   S D F+   N DGS  + CGNG R    +L S   +   +FT  T  G    
Sbjct: 61  AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-A 167
             +   + +       +    +                             V MGNPH A
Sbjct: 121 TVHS-CNATAASVTVEMGPARV------------TGVSTASVAGESYAGLGVDMGNPHLA 167

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                 +            +     F  GVN  +        + +R +ERGVG T +CG+
Sbjct: 168 AVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGT 227

Query: 228 AACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              A+  A+          V V + GG + +E +D     +TG +     G+  +
Sbjct: 228 GTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281


>gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338]
          Length = 286

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 107/293 (36%), Gaps = 35/293 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-------HDFQDAS 59
           F K  G  N  +++        +T   + AL         D ++ +              
Sbjct: 15  FLKGHGTENDFVILPDPDGELKLTDSRVQALCDRRRGLGADGVLRVVRTAALEDAPDSVP 74

Query: 60  VD-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSI 116
            D  F+   N DGS  + CGNG+R    +L      +       T  G+       DG +
Sbjct: 75  GDVWFMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPVVTRADGRV 134

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VDMG   L  +                               V +GNPH     E DL 
Sbjct: 135 TVDMGPAALFGR-----------------SRTAVGKENFPGVAVDLGNPHLACVTEADLD 177

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
             DL+S      +  +F +GVN+   + T    + +R +ERGVG T +CG+   A+ VA+
Sbjct: 178 GLDLSSQPPFDPQ--VFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAA 235

Query: 237 G-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
                 T     V + GG + +E  +     +TG A     G+LD     W +
Sbjct: 236 LDADGATTGHRIVDVPGGTVEVEVTEQTS-TLTGPAVLVAAGRLD---ALWWE 284


>gi|330466445|ref|YP_004404188.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032]
 gi|328809416|gb|AEB43588.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032]
          Length = 287

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 38/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58
           V F K  G GN  +++       ++T + + A+         D ++ ++   +       
Sbjct: 9   VKFTKGHGTGNDFVILPDPDGALDLTPELVAAICDRRRGLGGDGVLRVVRAAKHPDGAAL 68

Query: 59  --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT----FETIRGILVAKENR 112
               + F+   N DGS  + CGNG R  VRFL                T  G++ A+ + 
Sbjct: 69  AGDAEWFMDYWNSDGSFAEMCGNGARVFVRFLLDSGLATPIHGVLPVATRAGLVRARLDG 128

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +          +       L                           V +GNPH +  + 
Sbjct: 129 EDIAVEMRRPRLYATSTAALGA------------------LTLPGTAVDVGNPHLVCPLP 170

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIA---RVTS--LESLDLRTWERGVGLTAACGS 227
             L    L           +F  GVN+               + +R +ERG   T +CG+
Sbjct: 171 AGLELTGLDLTRAPGFDPTIFPSGVNVEFTADGEPLDGVDGHVLMRVYERGSAETLSCGT 230

Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270
            ACA    +   + +    ++V + GG L +    +N  +++G 
Sbjct: 231 GACAVAAVALRDIARETGTIAVDVPGGRLTVTLT-DNSCWLSGP 273


>gi|326445009|ref|ZP_08219743.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 285

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 97/288 (33%), Gaps = 23/288 (7%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQD 57
            FAK  G  N  +++       ++   A+  L         D I+               
Sbjct: 9   PFAKGHGAENDFILLPDPHGLLDLGPGAVRRLCHRRTGIGADGILRAVHTTAVPEAAAMA 68

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115
           A    F+   N DG+E Q CGNG+R   R+   T           T  G+      R  +
Sbjct: 69  ADAVWFMDYRNPDGTEGQMCGNGIRLFARYLVGTGHAPPGPLVIATRAGLRRLDVPRRRT 128

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
                    +    +P             HI             V MGNPHA+  V+ DL
Sbjct: 129 RFHGPVTVQMGRPRLP----------GPDHITVTAGTRTWPALHVDMGNPHAVALVD-DL 177

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            H    +    +     +  G  +          L LR  ERG G T +CG+ ACA+V A
Sbjct: 178 THPGPLTTPPAVEPAGAYPHGTTVEFVVRRGPRHLALRVHERGAGETRSCGTGACAAVAA 237

Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +            V   GG L +  H +  + +TG A+    G + + 
Sbjct: 238 ATHHTVPEPGTWIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLP 285


>gi|145295848|ref|YP_001138669.1| diaminopimelate epimerase [Corynebacterium glutamicum R]
 gi|166224256|sp|A4QEV1|DAPF_CORGB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|140845768|dbj|BAF54767.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 277

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQDA 58
           + FAK     N  ++I       ++T + +  L         D I+       +      
Sbjct: 5   IPFAKGHATENDFIIIPDEDARLDLTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTVD 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSI 116
               F+   N DGS  + CGNG+R    +L SR    + +F+  T  G+      +    
Sbjct: 65  PSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGVRHVDILQADQH 124

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDL 175
           S  +   +     IP        D +           +     V MGNPH A        
Sbjct: 125 SAQVRVDMG----IPDVTGLSTCDIN---------GQVFAGLGVDMGNPHLACVVPGLSA 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-ASVV 234
                            F  GVN+ I      +++ +R WERGVG T +CG+    A+  
Sbjct: 172 SALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACA 231

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A          V V + GG + ++  D+    +TG +     G++ I
Sbjct: 232 ALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277


>gi|46446076|ref|YP_007441.1| putative diaminopimelate epimerase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399717|emb|CAF23166.1| putative diaminopimelate epimerase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 269

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 29/285 (10%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66
           F K  G GN  ++ D R      +   I  L         D I+L+ +   A   A +RI
Sbjct: 5   FTKYVGCGNDFILFDNRNGKFPFSIPLIQQLCHRQWGVGADGIILLENSTIA--HARMRI 62

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DGSE + CGNG+RC++ ++ S       ++ ET   +L A ++             L
Sbjct: 63  FNADGSEAEMCGNGLRCLIDWMESLNILHSIYSIETNNHVLKAWKSASNITIEMGSPNKL 122

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +W  +P++                    +     ++ G PH I F E ++  + L   G 
Sbjct: 123 NWN-VPISFE----------------SKIYYVHSLNTGVPHIILFAE-NIEQFPLERMGP 164

Query: 186 LLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243
            +  HP++  +G N SI +    ++  +RT+ERGV   T ACG+ A A+ +A+   ++ +
Sbjct: 165 FIRYHPLWKPDGTNFSIVQHLHGQTFMIRTYERGVEAETLACGTGATAAALAAAFQYRLS 224

Query: 244 RAVSVKMLGGG-LLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283
             +S++   G  L I +        +V MTG A   + G + +++
Sbjct: 225 APISMQTRSGICLEIGFTLLNQKFTNVTMTGPALAVFNGSIKLES 269


>gi|313899044|ref|ZP_07832571.1| diaminopimelate epimerase [Clostridium sp. HGF2]
 gi|312956243|gb|EFR37884.1| diaminopimelate epimerase [Clostridium sp. HGF2]
          Length = 273

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 11/278 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63
           M+   K  G GN  ++ D          D +            D  +L+           
Sbjct: 1   MIPVTKYHGCGNDFIITDWELLKHKNIEDFVKHVCDRHTGIGADGCILVKQKP-----LE 55

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMG 121
           +   N DGS    CGNG+RC  ++         + +  ET+ G+            V + 
Sbjct: 56  MVFYNADGSRAPMCGNGIRCFAKYCYDEGIETAEEYDVETLAGVKHVTRVSLDPFQVRID 115

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             +  W   P +   D +                  +   M   H + FV  D + +D  
Sbjct: 116 --MGTWDDEPKSIQVDALKEPVMGYELPVGDKSVTVYSFFMSTVHTVVFVS-DAFAFDYN 172

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
             G+ +  H ++ E  N++  ++    +L + T+ERGVG+T ACG+ ACA+   +     
Sbjct: 173 EIGHAICHHTLYREQTNVNFVQIVDAHTLQMVTYERGVGMTLACGTGACAAARIAHEKKG 232

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               + + +  G L I+  D  HV M G A++  +G++
Sbjct: 233 CAANLKIILKRGELHIDIDDQQHVHMFGPAERILKGEV 270


>gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725]
 gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725]
          Length = 281

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 96/295 (32%), Gaps = 33/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++++       ++ + + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVIVEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
                   S D F+   N DGS  + CGNG R    +L S   +   +FT  T  G    
Sbjct: 61  AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-A 167
             +     +       +    +                             V MGNPH A
Sbjct: 121 TVHS-CDATAASVTVEMGPARV------------TGVSTASVGGESYAGLGVDMGNPHLA 167

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                 +            +     F  GVN  +        + +R +ERGVG T +CG+
Sbjct: 168 AVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGT 227

Query: 228 AACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              A+  A+          V V + GG + +E +D     +TG +     G+  +
Sbjct: 228 GTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281


>gi|59727201|gb|AAW92128.1| diaminopimelate epimerase [Enterobacter asburiae]
          Length = 180

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 9/182 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
           M+ F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D  
Sbjct: 1   MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV  CGNG RC  RF+  +    ++     T  G +V     D  + V+MG
Sbjct: 61  YRIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           EP  +  ++P      + ++                 VVSMGNPH +  V+ D+    + 
Sbjct: 121 EPNFEPSVVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVETAAVE 174

Query: 182 SF 183
           + 
Sbjct: 175 TL 176


>gi|213970235|ref|ZP_03398366.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
 gi|301385895|ref|ZP_07234313.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
 gi|302059241|ref|ZP_07250782.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
 gi|302130859|ref|ZP_07256849.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213925116|gb|EEB58680.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
          Length = 285

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 115/293 (39%), Gaps = 15/293 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           +DF K    GN  +V+D      +   + +  +         D ++        +    +
Sbjct: 1   MDFVKYTAQGNDYIVLDPNKMAMDFDVELVRKICDRRTGIGADGVLY--GPHLNNGKLGL 58

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILVAKENRDGSISVD 119
            + N DGS     GNG+R   R+L      +S +FE       + I V +        V 
Sbjct: 59  EVYNSDGSACGKSGNGLRVFSRYLVDNDYVQSDSFEIWLSRLAQSIAVQRLPTHNLFLVS 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +G   LD   +P+     K   +         + +     V +GNPH +   +       
Sbjct: 119 LGSFCLDSSKVPVMMDAKKTVLNETLHIAGREISIS---CVDIGNPHCVVLGQA-ADRAT 174

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G L+++H +F +  N+    + S   +++ TWERG G T A GS+ACA+      L
Sbjct: 175 AELLGPLISQHSIFPDKTNVQFVNIVSSSRIEVETWERGSGYTLASGSSACAAAAVCHTL 234

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
              +  V+V M GG + +    ++ + + G     + G   I +  + K  ++
Sbjct: 235 GLVDADVTVVMPGGMMSVFIDPDSTLNLIGSVTHVFSG---IFSYDFEKGMQN 284


>gi|66826259|ref|XP_646484.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4]
 gi|60474428|gb|EAL72365.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4]
          Length = 355

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 124/341 (36%), Gaps = 67/341 (19%)

Query: 6   VDFAKMEGIGNKILVID------MRGCHDNITSDAIN----ALSTDD-NTHFDQIMLIH- 53
           ++F KM G GN  +V +      + G    +T + I      ++       FDQ+++I  
Sbjct: 13  INFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDD 72

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---------------KRKSFT 98
           +  D +    + +INCDG+    CGNG+RC  +++                         
Sbjct: 73  NPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQI 132

Query: 99  FETIRGILVA----------KENRDGSISVDMGEPILDW------KLIP--LARSFDKMD 140
            ET  GI+            K+N    + V+MG P +        + IP  L        
Sbjct: 133 IETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIES 192

Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
                   + +        V++G    + F++ ++    L S      K           
Sbjct: 193 YMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISD 252

Query: 201 IARVTS--------------------LESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           I +                          +  R  ERG G T ACG+ AC   ++S    
Sbjct: 253 IIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKG 312

Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             N    ++V+M GG LLI+W+ NN +F TG A   ++ ++
Sbjct: 313 YCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQI 353


>gi|223985115|ref|ZP_03635211.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM
           12042]
 gi|223962937|gb|EEF67353.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM
           12042]
          Length = 269

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 104/283 (36%), Gaps = 18/283 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K +G GN  L+ D                        D +++            +
Sbjct: 1   MI-LEKYQGCGNDFLIADGSRTPVIDPQQVAALCDRHRGFGADGLIIARRDP-----LSM 54

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DG+    CGNG+RC V     +        +  R   +   +   S+ +   EP 
Sbjct: 55  ELWNQDGTRAGMCGNGLRCFVHHAYRKGW-----IQADRSYRIGTGDGLRSVWICSTEPF 109

Query: 125 LDWKL--IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYDLA 181
           +      IP   +    ++             +        G PH + F  D       A
Sbjct: 110 ICRVEAGIPDFDAKRMTNQPLLPGLLHAPFLSQQQSCSFWLGVPHTVLFTTD--PEVVSA 167

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
                + +HP F EG N+  AR+     L +RTWERGVG T ACG+ ACAS VA+     
Sbjct: 168 EQARAIGRHPFFKEGTNVDFARLKENGELQVRTWERGVGWTLACGTGACASAVAAAIFGL 227

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                 V+  GG L +E   +    +TG +   + GK ++K  
Sbjct: 228 CPLPCKVRCPGGLLDVEQAPDKQCLLTGPS--VYIGKAEVKAC 268


>gi|218659714|ref|ZP_03515644.1| diaminopimelate epimerase [Rhizobium etli IE4771]
          Length = 227

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 111/224 (49%), Positives = 146/224 (65%), Gaps = 5/224 (2%)

Query: 77  CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+P+ DW  IPLA  F
Sbjct: 2   CGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGKPVFDWDRIPLAEEF 61

Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196
               R    IGP+++  L +P  +SMGNPHAIF+V+ D+  YDLA FG LL  HPMF E 
Sbjct: 62  HDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDKDVMSYDLARFGPLLENHPMFPER 121

Query: 197 VNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM----LG 252
            N+++A+VTS  S+  RTWERG GLT ACGSAAC++ V++    +T R V + +      
Sbjct: 122 ANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRRVMINVASAKPP 181

Query: 253 GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
           G L IEW + ++HV MTG A+ EW G+LD  TG W    +    
Sbjct: 182 GTLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSGDADRGAE 225


>gi|46908247|ref|YP_014636.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|67460306|sp|Q71Y02|DAPF_LISMF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|46881518|gb|AAT04813.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 329

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 126/316 (39%), Gaps = 22/316 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53
           M++  + F K+ G  N   ++D    H         ++    L    +     D I+ + 
Sbjct: 1   MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+   
Sbjct: 59  KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
               +   +  +             +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280
           A  +    L  +     ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNNILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           I T    +   +   Y
Sbjct: 299 IVTELTNEATAEQAQY 314


>gi|19553148|ref|NP_601150.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|62390783|ref|YP_226185.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|24418359|sp|Q8NP73|DAPF_CORGL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|21324713|dbj|BAB99336.1| Diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|27452766|gb|AAO12272.1| diaminopimelate epimerase [Corynebacterium glutamicum]
 gi|41326121|emb|CAF20284.1| Diaminopimelate Epimerase [Corynebacterium glutamicum ATCC 13032]
          Length = 277

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 25/287 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQDA 58
           + FAK     N  ++I       ++T + +  L         D I+       +      
Sbjct: 5   IPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTVD 64

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSI 116
               F+   N DGS  + CGNG+R    +L SR    + +F+  T  G+      +    
Sbjct: 65  PSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQH 124

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDL 175
           S  +   +     IP        D +           +     V MGNPH A        
Sbjct: 125 SAQVRVDMG----IPDVTGLSTCDIN---------GQVFAGLGVDMGNPHLACVVPGLSA 171

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-ASVV 234
                            F  GVN+ I      +++ +R WERGVG T +CG+    A+  
Sbjct: 172 SALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACA 231

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A          V V + GG + ++  D+    +TG +     G++ I
Sbjct: 232 ALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277


>gi|218885665|ref|YP_002434986.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756619|gb|ACL07518.1| Diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 282

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 114/289 (39%), Gaps = 25/289 (8%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQD 57
           ++  V   K+ G GN  + ID R     +    D   ++         D ++ +    +D
Sbjct: 4   KARTVPIHKLHGCGNDFVFIDNRALGLPVAAMPDWARSVCRRAFGVGADGLVFLDETPKD 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI 116
              D      N DGS  + CGN  RC                F T  G++ A+ +    +
Sbjct: 64  REGDYIWHFYNADGSRAEMCGNASRCAALLAVELGFAGPKHVFGTDAGLIRAEADVAAGM 123

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +     P    + + L    D                      V+ G PHA+ F + D  
Sbjct: 124 AKVELTP---PRDLTLGIELDL------------GEGRDMVHFVNTGVPHAVVF-KRDAS 167

Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
             D+ + G  L +H  F   G N + A+V    ++ LRT+ERGV   T ACG+ A A   
Sbjct: 168 TVDVRTLGAALRRHAHFAPAGTNANFAQVIDRRNIHLRTFERGVEDETYACGTGAAAGAF 227

Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
            +  L      V+V+  GG  L I   +   VF++G+A + + G++ ++
Sbjct: 228 IAHALGLAESTVNVRSSGGEILGISI-EGGSVFLSGKAVRVFSGEMFLE 275


>gi|254854376|ref|ZP_05243724.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503]
 gi|300763677|ref|ZP_07073674.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017]
 gi|258607775|gb|EEW20383.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503]
 gi|300515413|gb|EFK42463.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017]
          Length = 329

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 22/316 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53
           M++  + F K+ G  N   ++D    H         ++    L    +     D I+ + 
Sbjct: 1   MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+   
Sbjct: 59  KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
               +   +  +             +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           I T    +   +   Y
Sbjct: 299 IVTELTNEATAEQAQY 314


>gi|213018750|ref|ZP_03334558.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995701|gb|EEB56341.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 251

 Score =  136 bits (341), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 19/262 (7%)

Query: 11  MEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G GN  ++ID R   + +     I    +      DQ+++I      + + F+ I N 
Sbjct: 1   MHGTGNSFVIIDSRSANNLDWNYRQIADQGS-----CDQVIIITMS--NAANCFMHIYNA 53

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWK 128
           DGS  + CGN  RCV   +      +  T E     IL   +  D SI V+MG+P+L W 
Sbjct: 54  DGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPLLKWN 113

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            IPL+   D +        P+    L+ P  V++GNPH +FFV+ ++    L + G  L 
Sbjct: 114 EIPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFVD-NISEIPLQNLGPKLE 166

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVS 247
            H +F +  N+SIA++     ++LR WERG G+TA+CGSAACA+ VAS        +  S
Sbjct: 167 NHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCLATKQTS 226

Query: 248 VKMLGGGLLIEWHDNNHVFMTG 269
           V + GG LLIEW  N  + MTG
Sbjct: 227 VHLPGGHLLIEWSKN--ILMTG 246


>gi|295424950|ref|ZP_06817662.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664]
 gi|295065389|gb|EFG56285.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664]
          Length = 333

 Score =  136 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/321 (23%), Positives = 136/321 (42%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +        S+D       D +++++    
Sbjct: 1   MTQLLKVHGSQNHFFILDQTELDEPLTDEQLRNFTKKITSSDTGILDGSDGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           +   A +R+IN DGSE   CGNG+R V R+L  +  +  F  +T+     A         
Sbjct: 61  SHALAQMRVINADGSEASMCGNGLRTVARYLFEQFHQDHFMVDTMN----ANLRVSKQAD 116

Query: 118 VDMGEPILDWKLIPLA-----RSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI-FF 170
           +  G P    ++ P++       FD +   R     V  L+       +++ NPH I F 
Sbjct: 117 LAEGVPAFAVEISPVSFANEKLPFDNVGLRRIIDQYVPELYPGLKFTALAVPNPHLISFM 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G      +P F +GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SQKQIEGPILGELGEKLNQDNPYFPDGVNVNFAQIIDRNQLFVRTFERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL--- 279
            A+ +A       L + N+ + V   GG +    H ++    + + G A      ++   
Sbjct: 237 SATSLALCLTHPDLGQFNQKIDVYNPGGKVQTIVHYDHDCYWIELIGNATFTARIEIGED 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++   +    I + ++  AY
Sbjct: 297 DLRQANFDNVKITETDEQTAY 317


>gi|213649578|ref|ZP_03379631.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 223

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 7/212 (3%)

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
            S   +    +      L     ++     T  G +V     D  + V+MGEP  +   +
Sbjct: 18  KSRSAAMARAVSLRFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQV 77

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           P      + ++                 VVSMGNPH +  V+ ++    + + G +L  H
Sbjct: 78  PF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVETLGPVLESH 131

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
             F E  N+   +V   E + LR +ERG G T ACGS ACA+V            V V++
Sbjct: 132 ERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVEL 191

Query: 251 LGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
            GG L I W    H ++MTG A   ++G + +
Sbjct: 192 PGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 223


>gi|66826261|ref|XP_646485.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4]
 gi|60474429|gb|EAL72366.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4]
          Length = 357

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 118/342 (34%), Gaps = 68/342 (19%)

Query: 6   VDFAKMEGIGNKILVIDMRGCH-----------DNITSDAINALSTDDNTHFDQIMLI-H 53
           ++F KM+G GN  +V +                + I+               DQ+++I  
Sbjct: 14  INFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGFTKKLSHRKLGIGCDQLIIIDD 73

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---------------KRKSFT 98
           +  D +    + +INCDG+    CGNG+RC  +++                    +    
Sbjct: 74  NPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIIDNKVLSKNLKEQLNFDGDDKIEQI 133

Query: 99  FETIRGILVA------------KENRDGSISVDMGEPILDWKLI------PLARSFDKMD 140
            ET  GI+              K+     +++   +       I       L++      
Sbjct: 134 IETKSGIVKTYPLLKHHLNNKEKDVIMVKVNMGTSKISRLINEIDYNIPKTLSKQSPLES 193

Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
                   + +        VS+G    + F++ ++    L S     +K  M +      
Sbjct: 194 YMYTIDIGLPYCSKLECVYVSVGVNQCVVFIDRNIELGYLDSSYGDFSKFSMINIQEISD 253

Query: 201 IARVTSLESLDL--------------------RTWERGVGLTAACGSAACASVVASGCLH 240
           I +      +D+                    R  ERG G T ACG+ AC   VAS    
Sbjct: 254 IIQSNVNGFVDIANVEFVIQSPQDKLENKVISRVVERGSGETLACGTGACGVAVASILKG 313

Query: 241 KTNRAVS--VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279
             N      V+M GG LLI+W  NN  +F TG A   ++ ++
Sbjct: 314 YCNENTESIVEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQI 355


>gi|254831740|ref|ZP_05236395.1| diaminopimelate epimerase [Listeria monocytogenes 10403S]
          Length = 329

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D       + +    +D    L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +   K    +   +      F+              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTV 181

Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              D        L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283
           +    L K      ++V   GG + +    +      + + G A     G +    D  T
Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYESDTVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATPEQAQY 314


>gi|47093188|ref|ZP_00230962.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858]
 gi|254931814|ref|ZP_05265173.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262]
 gi|47018439|gb|EAL09198.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858]
 gi|293583368|gb|EFF95400.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262]
 gi|328466359|gb|EGF37516.1| diaminopimelate epimerase [Listeria monocytogenes 1816]
 gi|328472755|gb|EGF43606.1| diaminopimelate epimerase [Listeria monocytogenes 220]
 gi|332312451|gb|EGJ25546.1| Diaminopimelate epimerase [Listeria monocytogenes str. Scott A]
          Length = 329

 Score =  135 bits (339), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 22/316 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53
           M++  + F K+ G  N   ++D    H         ++    L    +     D I+ + 
Sbjct: 1   MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+   
Sbjct: 59  KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
               +   +  +             +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           + T    +   +   Y
Sbjct: 299 VVTELTNEATAEQAQY 314


>gi|726355|gb|AAC44326.1| diaminopimelate epimerase [Yersinia pestis]
          Length = 198

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 9/191 (4%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F+KM G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   
Sbjct: 1   MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+  +    ++  +  T  G ++     D  + V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P  + + +P   +     +  + +    H  L    VVSMGNPH +  V+ D+   ++A 
Sbjct: 121 PDFEPQTVPFRAA---KAQKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174

Query: 183 FGNLLAKHPMF 193
            G +L  H  F
Sbjct: 175 LGPVLENHERF 185


>gi|229544305|ref|ZP_04433364.1| diaminopimelate epimerase [Bacillus coagulans 36D1]
 gi|229325444|gb|EEN91120.1| diaminopimelate epimerase [Bacillus coagulans 36D1]
          Length = 331

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 75/292 (25%), Positives = 123/292 (42%), Gaps = 27/292 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNTHFDQIMLIHDFQDASV 60
           V   K  G GN  L+ID       +T D            D     D ++ +   +    
Sbjct: 3   VKLIKCHGSGNDFLLIDETEISAPLTDDIRKKMALSFCRRDAGLGADGLLFV--SESQQA 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-----ENRDGS 115
           DA +R+ N DGSE   CGNG+RCV R+++ +  +     ET++  L A+      +   +
Sbjct: 61  DAKMRVFNADGSEASMCGNGLRCVARYVSEKRGKDDLLIETMKANLYARKAEPLLDGIPT 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
             V++     D   +P+    + +  +       +     +   V++ NPH I FVE++ 
Sbjct: 121 FRVEISPVSFDLNKLPMHIDKEVLINEPVKALSED----LSFTAVAVPNPHLIAFVENEG 176

Query: 176 YHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +  D     +     P  +F +GVN+S A+      L +RT+ERGVG T ACG+A  AS 
Sbjct: 177 FRSDTQKTLSEYVNGPNDIFPDGVNVSFAKPIGENGLYVRTFERGVGFTNACGTAMSASS 236

Query: 234 VASGCLHK--TNRAVSVKMLGGGL-----LIEWHDN--NHVFMTGEAKKEWE 276
           + +  L        + V   GG +      IE        + + G A   +E
Sbjct: 237 LVACLLRLRPFGEMIDVFNNGGKVRCFVQKIEKEGEPAYTIDLIGNATYLYE 288


>gi|269928839|ref|YP_003321160.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745]
 gi|269788196|gb|ACZ40338.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745]
          Length = 274

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 110/289 (38%), Gaps = 27/289 (9%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K+ G GN  +V+ +      +++  A    +   +   D I+++   +  +  A I
Sbjct: 5   LPFMKLSGAGNDFIVLAEEDAADLDLSWLARRLCTRALSLGADGIIVVGAERSDA--ARI 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
           R  N DGS  + CGNG RC  R+   R   +   F   T  G L      DG   V M E
Sbjct: 63  RFYNPDGSLAEMCGNGSRCAARYAVERGLVQGPEFHLLTDSGDLPVMARPDGRFEVVMPE 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           P                      +             + +G PHA+ FV  D+  +    
Sbjct: 123 PEQVRFD---------------AMTVEAGEEQWPLHALWVGVPHAVVFV-PDVERHSDEH 166

Query: 183 FGNLLA----KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237
              L          F  G N++   V     +  RT+ERGV  LT ACG+ A A+     
Sbjct: 167 LTALGRALRYDDKHFPAGTNVNFVEVAPDRPIRQRTYERGVEALTKACGTGATATAFVVH 226

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            L      V + + GG L ++   +  +++ G+A+    G L  +   W
Sbjct: 227 TLLDRPWPVDLVVDGGRLTVD-QRDGRLWLIGDARIIARGTLSPEALAW 274


>gi|311742266|ref|ZP_07716075.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272]
 gi|311313894|gb|EFQ83802.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272]
          Length = 272

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 107/286 (37%), Gaps = 28/286 (9%)

Query: 6   VDFA--KMEGIGNKILVIDMRGCHD--NITSDAINALS-TDDNTHFDQIMLIHDFQ---- 56
           + F+  K  G  N  +++         ++    + AL         D ++ +        
Sbjct: 1   MTFSWLKGHGTENDFVLLPDHDGTVHGDLDPTFVAALCHRRRGIGADGVLRVVRSAATGL 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
            ++ + F+   N DGS  + CGNG+R     L           +     LV   + D  I
Sbjct: 61  PSAAEWFMDYRNADGSTSEMCGNGIRVFALHLVQEG-----LVDPSGPFLVGTRDGDKQI 115

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +VD     +D            +   R          +     V  GNPHA+ FV+D   
Sbjct: 116 TVDGDLVTVDM----------GVAEVRGTTKVTVDDHVWEAQDVRTGNPHAVAFVDDLAE 165

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L +         ++ +GVN+   R    + + +R  ERG G T +CG+ ACA+ VA 
Sbjct: 166 AGALTAQPEYDEV--VYPDGVNIEFVRRLGADHIAIRIHERGSGETRSCGTGACAAAVAH 223

Query: 237 GCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           G  H         V + GG + +    +  V + G A+    G+++
Sbjct: 224 GLDHPSPVGSTCRVDVPGGTVWVTRGPDGAVALAGPAEIVARGEME 269


>gi|328885515|emb|CCA58754.1| Diaminopimelate epimerase [Streptomyces venezuelae ATCC 10712]
          Length = 268

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 110/287 (38%), Gaps = 38/287 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------ASVDAFIRIINC 69
           +++       ++    +  L         D ++ +                + F+   N 
Sbjct: 1   MIVPDAENAVDLPPAVVARLCDRRAGIGGDGLLHVVRSAAHPEARHMADEAEWFMDYRNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILDW 127
           DGS  + CGNG+R   R+L       +      T  G+     ++DGS++V MG  +L  
Sbjct: 61  DGSVAEMCGNGVRVFARYLEHAGHVTAGRLAVATRGGVKHVHLDKDGSVTVAMGRAVLAE 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             + +                           V+MGNPHA+ FVE DL H          
Sbjct: 121 AGVTVTVDGR----------------SWPARNVNMGNPHAVAFVE-DLDHAGNLFTEPPY 163

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-----KT 242
               ++ +GVN+          + +R  ERG   T +CG+ ACA  VA+         +T
Sbjct: 164 EPAAVYPDGVNIEFVADRGPRHVAMRVHERGAAETRSCGTGACAVAVATARRDGADPAET 223

Query: 243 NRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
              V  +V +LGG L+I  H +  + MTG A    EG +D     W+
Sbjct: 224 GTPVTYTVDVLGGTLVITEHPDGQIDMTGPAVIVAEGTVDP---AWL 267


>gi|217963835|ref|YP_002349513.1| diaminopimelate epimerase [Listeria monocytogenes HCC23]
 gi|254767109|sp|B8DBR3|DAPF_LISMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|217333105|gb|ACK38899.1| diaminopimelate epimerase [Listeria monocytogenes HCC23]
 gi|307571594|emb|CAR84773.1| dapF [Listeria monocytogenes L99]
          Length = 329

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGC-----HDNITSDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D          D   +D    L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175
            +   +  +             +  ++     +  L     F  VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDTELAFSAVSVPNPHLITFVDQSV 181

Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                     +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKT 283
           +    L        ++V   GG + +   ++    +   + G A    +G +    DI T
Sbjct: 242 LIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLIGNATFVSKGSVRYENDIVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATAEQALY 314


>gi|313618001|gb|EFR90150.1| diaminopimelate epimerase [Listeria innocua FSL S4-378]
          Length = 329

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D       + +    +D    L   ++     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +   K    +   +      F+              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFVDQTV 181

Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              D        L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283
           +    L K      ++V   GG + +    +      + + G A     G +    D  T
Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYERDAVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATPEQAQY 314


>gi|16801192|ref|NP_471460.1| diaminopimelate epimerase [Listeria innocua Clip11262]
 gi|21362476|sp|Q929Z7|DAPF_LISIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|16414640|emb|CAC97356.1| lin2126 [Listeria innocua Clip11262]
          Length = 329

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 125/313 (39%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D       + +    +D    L   ++     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +   K    +   +      F+              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFVDQTV 181

Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              D        L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKTGKWI 287
           +    L K      ++V   GG + +    +      + + G A     G +  + G   
Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYERGTVT 301

Query: 288 ----KKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATPEQAQY 314


>gi|16804057|ref|NP_465542.1| diaminopimelate epimerase [Listeria monocytogenes EGD-e]
 gi|224501181|ref|ZP_03669488.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-561]
 gi|284802464|ref|YP_003414329.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578]
 gi|284995606|ref|YP_003417374.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923]
 gi|21362467|sp|Q8Y5N9|DAPF_LISMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|16411471|emb|CAD00096.1| lmo2018 [Listeria monocytogenes EGD-e]
 gi|284058026|gb|ADB68967.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578]
 gi|284061073|gb|ADB72012.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923]
          Length = 329

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D  G    + +    +D    L   ++     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +   K    +   +      F+              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTV 181

Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              D        L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283
           +    L K      ++V   GG + +    +      + + G A     G +    D  T
Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYESDTVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATPEQAQY 314


>gi|295395414|ref|ZP_06805613.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971736|gb|EFG47612.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 300

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 98/297 (32%), Gaps = 31/297 (10%)

Query: 5   MV--DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ----- 56
           M+     K  G  N  +++        +    +  L+        D ++ +   +     
Sbjct: 1   MIDGQLVKGHGTANDFVLLHDPNGEHELDPARVRELADRRTGIGGDGVIRVIRSEALGEE 60

Query: 57  ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  + F+   N DGS  + CGNG+R    +L +    +  +F       +   
Sbjct: 61  AGDVAHGAGAEWFMDYRNADGSIAEMCGNGVRVFAHYLRTYGLVQDQSFAVGTRAGIKHV 120

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH--IGPVNHLFLRNPFVVSMGNPHAI 168
                +  D       W  + + +       + F   +        R    V MGNPH +
Sbjct: 121 T----VIPDPLGGDTPWYKVDMGKWQLPGGGEAFDATVETTGVRVARPGLTVDMGNPHTV 176

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-----LDLRTWERGVGLTA 223
             +         A         P    G N+    +          L +R  ERGVG T 
Sbjct: 177 VALAH-AEELQAAKLHEPPHVEPTPPAGTNVEYIVIEPDNDPTTGTLRMRVHERGVGETY 235

Query: 224 ACGSAACASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           ACG+ ACAS +A+        +     +V   GG + IE      V ++G A   +E
Sbjct: 236 ACGTGACASALAAYVWAGRGPQAPTTWTVHQPGGAVRIEIT-GETVALSGPAVITYE 291


>gi|282855994|ref|ZP_06265285.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455]
 gi|282586213|gb|EFB91490.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455]
          Length = 301

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 29/287 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           + ++F K+ G GN  + +DM         +   A        +   D ++++     A  
Sbjct: 29  TTMEFWKINGNGNDFITLDMLAAQKPAHELAELARRLCRRRASVGADGLLIVEPS--AGA 86

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKEN-RDGSISV 118
              +R+ N DGSE + CGNG RC+ RF   R       TFET+ G++ A+       I +
Sbjct: 87  HFRMRLFNADGSEAEMCGNGARCIARFAYERGVAPAEMTFETLAGVMRARVEGSFAEIDL 146

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
                  DW   PL                           + +G PH + F  ++L   
Sbjct: 147 GEQSFAPDWIDRPLTMD----------------GAAFRSCFLWVGVPHLVLFAPEELSRD 190

Query: 179 DLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236
           D    G        +F +G N++ AR      L   T+ERGV  LT +CG+ + A+ +++
Sbjct: 191 DCRRIGRAFRADASLFPQGCNVNFARPVGRGELSAVTYERGVEDLTDSCGTGSVAAALSA 250

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVF---MTGEAKKEWEGKL 279
           G L   +  + V   GG   + +   +   F   + G+     +G+L
Sbjct: 251 GLLFGMDSPIEVHNPGGTNRVAFERLDGTRFRTVLGGDTAVVAKGEL 297


>gi|254825491|ref|ZP_05230492.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194]
 gi|293594733|gb|EFG02494.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194]
          Length = 329

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 22/316 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53
           M++  + F K+ G  N   ++D    H         ++    L    +     D I+ + 
Sbjct: 1   MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+   
Sbjct: 59  KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
               +   +  +             +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           + T    +   +   Y
Sbjct: 299 VVTELTNEATAEQGQY 314


>gi|313623006|gb|EFR93299.1| diaminopimelate epimerase [Listeria innocua FSL J1-023]
          Length = 329

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D       + +    +D    L   ++     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +   K    +   +      F+              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVIPELDSELAFSAVSVPNPHLITFVDQTV 181

Query: 176 --YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                       L +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQATLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283
           +    L K      ++V   GG + +    +      + + G A     G +    D  T
Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYESDTVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATPEQAQY 314


>gi|226224615|ref|YP_002758722.1| diaminopimelate epimerase [Listeria monocytogenes Clip81459]
 gi|259595058|sp|C1KWW2|DAPF_LISMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|225877077|emb|CAS05788.1| Putative diaminopimelate epimerase [Listeria monocytogenes serotype
           4b str. CLIP 80459]
          Length = 329

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 126/316 (39%), Gaps = 22/316 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53
           M++  + F K+ G  N   ++D    H         ++    L    +     D I+ + 
Sbjct: 1   MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
              +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+   
Sbjct: 59  KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172
               +   +  +             +  ++     +  L     F  VS+ NPH I FV+
Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
             +          +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  
Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238

Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280
           A  +    L        ++V   GG + +    +    +   + G A    +G +    D
Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298

Query: 281 IKTGKWIKKNEDDEAY 296
           + T    +  ++   Y
Sbjct: 299 VVTELTNEATDEQGQY 314


>gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231]
 gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002]
 gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19]
          Length = 297

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 98/295 (33%), Gaps = 34/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++I+       +T   I+A+         D ++ +            
Sbjct: 11  ISFAKGHGTENDFVIIEDLDAKLPLTPQLISAICDRRAGVGADGVLRVAHVGSLLASGVL 70

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
                     D F+   N DGS  + CGNG R    +L SR  +    F+  T  G    
Sbjct: 71  TQAPEGLDPSDYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTV 130

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +   S +       +    +                             V MGNPH  
Sbjct: 131 SVHAF-SATDADVSVDMGPAEV------------TGVSTCRIGTASYAGMGVDMGNPHLA 177

Query: 169 FFVEDDLYHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAACG 226
             V                +     F EGVN+ +      +  + +R +ERGVG T +CG
Sbjct: 178 CVVPGLTPQALAEVDLVQPVVDGEFFPEGVNVELLTELDQQSQIHMRVYERGVGETRSCG 237

Query: 227 SAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +    A+  A       +  V V + GG + +    +  V + G +K    G+LD
Sbjct: 238 TGTVAAARSALADAGLVDGHVVVHIPGGSVSVTIQGDTSV-LRGPSKIVAWGQLD 291


>gi|257056740|ref|YP_003134572.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017]
 gi|256586612|gb|ACU97745.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017]
          Length = 277

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 34/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHD-------FQD 57
           ++F K  G  N  +++        +T   + AL         D ++ +           D
Sbjct: 4   IEFLKGHGTQNDFVLLPDPDASLELTPQRVAALCDRRRGLGADGVLRVVRSAALDAGPSD 63

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS 115
           +  + F+   N DGS  + CGNG+R   R+L          F   T  G    + + D S
Sbjct: 64  SEAEWFMDYRNADGSIAEMCGNGVRVFARYLVEAGLEAGPEFPVGTRAGDRHVRVHDDLS 123

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           ++V MG   +    + +    +                  +   V +GNPH +  ++D  
Sbjct: 124 VTVHMGAATITGTSVAVVGGRE-----------------LSGVAVDVGNPHLVSVLDD-- 164

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
              +L           +F EGVNL    V   E L +R +ERGVG T ACG+   A+V A
Sbjct: 165 DVDELDLRDAPRYDTEVFPEGVNLEFVNVLGSEELRMRVYERGVGETRACGTGTVAAVAA 224

Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
           +  L   +    +V + GG + +         +TG A+   +G+LD     W + 
Sbjct: 225 ALHLRGVDTGESTVDIPGGRVSVTV-GKGVSTLTGPAEFVAKGELD---RAWWEA 275


>gi|289177401|gb|ADC84647.1| Diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 357

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 33/301 (10%)

Query: 1   MQSSMVDFAKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF---- 55
           +   M+   K +G GN  +   D  G H     D I           D ++ I       
Sbjct: 60  LPEHMI---KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVA 116

Query: 56  ----------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI 105
                     +   V+ F+   N DG+  + CGNG R   +FL  +   +    E     
Sbjct: 117 DLDGHDAQKMRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLE---LEEGDAF 173

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            +        I+     P L  +L  +   S+     D + +             V MGN
Sbjct: 174 KLGTRAGVKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDMGN 233

Query: 165 PHAIFFVEDDLYHYDLA---SFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTW 215
           PH +  VED      +             P    G N+  AR         L    +R +
Sbjct: 234 PHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRVY 293

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           ERG G T ACG+  CA+ +      + +    +++ GG + ++  D+  V +TG A    
Sbjct: 294 ERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALTA 351

Query: 276 E 276
           E
Sbjct: 352 E 352


>gi|297160946|gb|ADI10658.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 110/288 (38%), Gaps = 17/288 (5%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLI-HDFQDA 58
           M DF K + +GN  L++D RG           +A+  L         D ++    D    
Sbjct: 1   MGDFVKYQALGNDYLIVDPRGGGTALGTEPVPEAVRLLCDRHRGVGADGLLFGPLDAPRP 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKE--N 111
              A +RI N DGSE    GNG+R    +L     R+      FT  T  G    +    
Sbjct: 61  GTAAPLRIFNADGSECGMSGNGLRMFALYLGEHYVREWRTGTPFTVRTPGGDAEVRIMDV 120

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            DG + V MG                         GP + + + +   + +G PH +   
Sbjct: 121 TDGRVCVGMGRARFTTGGGTDGGGAAATVVPLAGAGPGDEVTVTD---LHLGVPHTVVLR 177

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +  +    +   G  LA HP   EG N+   RV    +LD+  WER  G   A GS ACA
Sbjct: 178 DA-IDGELVRRLGPALAWHPRHPEGTNVEFVRVHDDRTLDIAVWERVAGPVPASGSGACA 236

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +   +         V+V+M GG + +    +  +   G A++   G L
Sbjct: 237 AAAVARARGLVGPDVTVRMPGGEVDVSVARDGRISSVGTAQEVMTGVL 284


>gi|226227017|ref|YP_002761123.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27]
 gi|259595056|sp|C1A8U3|DAPF_GEMAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226090208|dbj|BAH38653.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27]
          Length = 277

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 98/290 (33%), Gaps = 32/290 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + F KM G GN  +  D R    ++    +AI A+    +    D ++++   Q+   D 
Sbjct: 1   MSFVKMTGSGNDFVFFDGRTTPIDLVTQPEAIKAICNRYNGIGADGLVVLEPLQE-EADV 59

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            +   N DG+    CGN   C            +       G  +     DG  ++ +  
Sbjct: 60  RVHYYNSDGTAADLCGNATLCSTAISAQWGITSASGMRLATGAGLINSRIDGLPAIALQP 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                  +P+A              P      R  F V  G PH +   ED        +
Sbjct: 120 ITDIRPDMPIA--------------PATAQGRRVGFAV-AGIPHLVILCEDADAVDVAGA 164

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241
              L         G N++        S   RT+ERGV   T ACG+ A A+ V       
Sbjct: 165 GPALRRHEATGPAGANVNWVSPRPDGSWRYRTFERGVEGETLACGTGAVATAVLLRSWGL 224

Query: 242 TN-RAVSVKMLGG-GLLIEWH----------DNNHVFMTGEAKKEWEGKL 279
           ++    +++   G  + ++            +     + GE +  + G++
Sbjct: 225 SDGATTTIRTSSGRDVEVDLEPLTAPDGRSLEGFRPTLRGEGRVVFRGEI 274


>gi|313632513|gb|EFR99521.1| diaminopimelate epimerase [Listeria seeligeri FSL N1-067]
          Length = 332

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 26/316 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D    + +       +D    L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     ++++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLAEAKVETMKAILDVKKASSLGF 121

Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +      P +   +       +              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVNFKPESLPMNLPVEKLINQVVPELDAELAFSAVSVPNPHLIAFVDQAV 181

Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                     +    ++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKE------WEG-KLD 280
           +    L +      ++V   GG + +   ++      + + G A         ++G +++
Sbjct: 242 LIKKMLDRDVLETPLNVYNDGGRVQVTAKEDAKGELSLQLIGNATFVNVGTVSYDGDEVE 301

Query: 281 IKTGKWIKKNEDDEAY 296
             T +      +  +Y
Sbjct: 302 PLTNE---ATPEQASY 314


>gi|254827095|ref|ZP_05231782.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165]
 gi|258599478|gb|EEW12803.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165]
          Length = 329

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D       + +    +D    L   ++     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175
            +   +  +             +  ++     +  L     F  VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAV 181

Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                     +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKT 283
           +    L        ++V   GG + +    +    +   + G A    +G +    DI T
Sbjct: 242 LIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYENDIVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATAEQAQY 314


>gi|119718061|ref|YP_925026.1| diaminopimelate epimerase [Nocardioides sp. JS614]
 gi|119538722|gb|ABL83339.1| diaminopimelate epimerase [Nocardioides sp. JS614]
          Length = 279

 Score =  132 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 33/284 (11%)

Query: 7   DFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
            F K  G  N  +++         ++++D + AL         D ++ +          F
Sbjct: 14  PFLKGHGTENDFVLLPDLDGSLHGDLSADRVRALCDRHAGIGGDGVLRVLRTDAG---WF 70

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120
           +   N DGS  + CGNG+R  VR L         +    +T  G+ V   +    I+ DM
Sbjct: 71  MDYRNADGSIAEMCGNGIRVFVRHLVEEGLADPGQPIEVDTRDGVKVLTVDG-DLITADM 129

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYD 179
           G P +  + +                             V MGNPHA+ FV+  D +   
Sbjct: 130 GRPRVLGETV-----------------VGVGTVSWPARHVDMGNPHAVAFVDSLDPHGPV 172

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG-- 237
                        F +G N+          + +R  ERG G T +CG+ ACA +VA+   
Sbjct: 173 GPLLDPPSRDPETFPDGANVEFVVRRGERHVAMRVHERGSGETRSCGTGACAVMVAAAVA 232

Query: 238 ---CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
                   + A  V + GG L + W  ++ V +TG A     G 
Sbjct: 233 DGARPSGADVAYRVDVPGGTLTVTWTADDRVLLTGPAVIVARGT 276


>gi|297559654|ref|YP_003678628.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844102|gb|ADH66122.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 271

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/291 (21%), Positives = 109/291 (37%), Gaps = 36/291 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           + FAK  G  N  +++       ++T +A+  L         D ++ +   +        
Sbjct: 1   MRFAKGHGTENDFVILPDPDGELDLTEEAVRLLCDRRAGIGADGVLRVVRTRALGEALAP 60

Query: 57  ----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKE 110
                   + F+   N DGS  + CGNG+R   R+L      +   FE  T  G    + 
Sbjct: 61  AARTAERSEWFMDYRNADGSVAEMCGNGVRVFARYLLHAGLVEGDRFEVGTRDGAKEVQV 120

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             DG I++DMG   +                            + +   +S+GNPH    
Sbjct: 121 EADGGITIDMGRVEMQG-----------------TSSAKLARQVVHGEQISVGNPHLACE 163

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V   +   DL     L      F  G N+ + R  +   L++R +ERG G T +CG+   
Sbjct: 164 VTVPVAEVDLGELPVLD--VEAFPAGANVEVYREVAPGVLEMRVYERGSGETRSCGTGIV 221

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A+  A+    +      V++ GG   +    +    ++G A    EG+ ++
Sbjct: 222 AAAAAATPRGE-GATWRVRVPGGECTVFLDADG-ARLSGPAVIVAEGETNL 270


>gi|326333220|ref|ZP_08199467.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1]
 gi|325948864|gb|EGD40957.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1]
          Length = 283

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 109/295 (36%), Gaps = 41/295 (13%)

Query: 10  KMEGIGNKILVIDMRGCHD--NITSDA----INALSTDD-NTHFDQIMLI--------HD 54
           K  G  N  +++         +++ +     + AL         D I+ +         D
Sbjct: 7   KGHGTENDFVLLPDLDGSVHGSLSDEEMAARVRALCDRRAGIGGDGILRVIRTAAYTGAD 66

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRD 113
              +  + F+   N DG+  + CGNG R    +  ++ +     TF T  G    +   D
Sbjct: 67  RPASDAEWFMDYRNADGTLAEMCGNGTRVFAEYLRSAGLAGDEVTFATRAGDKTLRAEGD 126

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
              +      +L    + +A  F                   +   V MGNPHA   VE 
Sbjct: 127 VWTADLGSPKLLGSTQVTVAHHF------------------WSACNVDMGNPHAAAEVES 168

Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
              H  +    +       ++  GVN+      +   L +R +ERG G T +CG+ ACA 
Sbjct: 169 IDPHGPVGDLYDSPVFDETVYPHGVNVEFFVRVAERHLAMRVYERGAGETRSCGTGACAV 228

Query: 233 VVASGCLHKT----NRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +VA+          +  V+  V + GG L + W  ++ V +TG A    EG   +
Sbjct: 229 MVAAAEADGLAIARDADVTYRVDVPGGTLHVTWTTDDRVLLTGPAILVAEGTTSL 283


>gi|282891193|ref|ZP_06299696.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498886|gb|EFB41202.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 266

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 115/279 (41%), Gaps = 26/279 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHD-NITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65
           F+K  G GN  ++ID R     +  +  I  L         D ++L+     A  D  +R
Sbjct: 5   FSKYSGCGNDFILIDNRDQRFPDRDASFIERLCLRRHGIGADGLILLELSHIA--DFRMR 62

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           I N DG E + CGNG+RC+V             F    GI           S+    P  
Sbjct: 63  IFNADGYETEMCGNGIRCLV------------KFAQEIGIQKKHYTIQTMHSLLEAFPFG 110

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D   I +    +     +  +       L     V  G PHA+ FV++      +     
Sbjct: 111 DSITISMTDPAEIEWDTQIEVD----QTLLTVHWVDTGVPHAVIFVDELEEARWMTLAPK 166

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
           + A      +GVN++ A+    E + LRT+ERGV   T ACG+ A A+ +A+  +   + 
Sbjct: 167 IRAHPHFSPKGVNVNFAQ-IKKEEISLRTYERGVEQETLACGTGATAAAIAAAKIQGISS 225

Query: 245 AVSVKMLGGG-LLIEWHDNN---HVFMTGEAKKEWEGKL 279
            VS+K   G  L I++       +V +TG A   ++G L
Sbjct: 226 PVSIKTRSGDNLEIQFEKTTKFRNVRLTGPAICTFKGVL 264


>gi|313159544|gb|EFR58907.1| diaminopimelate epimerase [Alistipes sp. HGB5]
          Length = 268

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 35/287 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63
           +V F K EG GN  ++ID R    +  +  I AL         D +M +       +D  
Sbjct: 2   LVSFVKYEGAGNDFILIDDREELFSADARLIAALCDRHFGIGADGLMTLRRS--VEMDCS 59

Query: 64  IRIINCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +R  N DGS  + CGNG RC         +  ++  F+   G+  A+  R  + + ++  
Sbjct: 60  MRYYNADGSPGEMCGNGARCFALFAEHLGIGGETKYFDATDGMHTARICRAKNRTGEIEL 119

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            +++   I                        +  + ++ G PH + F E +L   D+  
Sbjct: 120 GMINVSEI---------------------RSGKGWWFLNTGVPHYVEFTE-ELDGVDVKG 157

Query: 183 FGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS-GCL 239
            G ++      F +G N++ A +     + +RT+ERGV   T ACG+ A A+ + +   L
Sbjct: 158 LGRMIRHDTARFPQGTNVNFAEIAGEGEIRMRTYERGVENETLACGTGATAAAIITNYAL 217

Query: 240 HKTNRAVSVKMLGGGLLIEWHDN------NHVFMTGEAKKEWEGKLD 280
                   + + GG L + +           + +TG A++ ++G  +
Sbjct: 218 QHETTKYRITVPGGELHVRFSHEPGTQTYTDIRLTGPARRVFKGVFE 264


>gi|224498531|ref|ZP_03666880.1| diaminopimelate epimerase [Listeria monocytogenes Finland 1988]
          Length = 329

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/313 (21%), Positives = 124/313 (39%), Gaps = 20/313 (6%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D       + +    +D    L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175
            +   +  +             +  ++     +  L     F  VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAV 181

Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                     +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKT 283
           +    L        ++V   GG + +    +    +   + G A    +G +    DI T
Sbjct: 242 LIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYENDIVT 301

Query: 284 GKWIKKNEDDEAY 296
               +   +   Y
Sbjct: 302 ELTNEATAEQAQY 314


>gi|300784292|ref|YP_003764583.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32]
 gi|299793806|gb|ADJ44181.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32]
          Length = 275

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 28/283 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----HDFQDASV 60
           ++F K  G  N  +++        +T   + AL         D ++ +       + ++ 
Sbjct: 4   IEFLKGHGTQNDFVLLPDPAGRLELTEARVAALCDRRRGLGADGVLRVVRAAELGEPSAG 63

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           + F+   N DGS  + CGNG+R   R+   T       F   T  G      + D S++V
Sbjct: 64  EWFMDYRNADGSIAEMCGNGVRVFARYLVETGLAAEGEFVVGTRAGDRPVVVHPDRSVTV 123

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
            MG   +    + +                       +   V +GNPH +  ++DD+   
Sbjct: 124 HMGPATITGTSVTVVAGRPF-----------------SGVAVDVGNPHLVSLLDDDVAGL 166

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
           DL    +    H +F  GVNL         +L +R  ERGVG T ACG+   A+V A+  
Sbjct: 167 DLREQPDFD--HDLFPHGVNLEFINCLGEGALRMRVHERGVGETRACGTGTVAAVAAAFH 224

Query: 239 LHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           L  T+    +V + GG + +         ++G A+    G+LD
Sbjct: 225 LAGTDTGASTVDIPGGRVEVTVSRGAS-TLSGPAEIVARGELD 266


>gi|255524200|ref|ZP_05391160.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512185|gb|EET88465.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 225

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 15/232 (6%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL------VAK 109
                   + I+N DGS    CGNG+RC  +++      K  +     G          +
Sbjct: 3   NSDVAQIKMIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLE 62

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            +    ++++MG P  + + IP      + + +  +          N   + MG PH I 
Sbjct: 63  NHSIKEVTINMGTPSFEVEKIPA-----RFNEEVINKRIKVEKKEYNITSMLMGVPHTII 117

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           F +  L  Y++   G  + K   F +G N++   V S   + ++TWERG G T ACG+ +
Sbjct: 118 FGK--LEDYNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGS 174

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           CASV+A+  L  T+ +V V++ GG L IE   N  +FMTG A   ++G+ ++
Sbjct: 175 CASVIAANKLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 225


>gi|256371460|ref|YP_003109284.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008044|gb|ACU53611.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 254

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 100/281 (35%), Gaps = 31/281 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           +   K+ G GN  LV         +    + AL    +    D ++ +           +
Sbjct: 1   MRLTKLVGAGNDFLVTTDPDETARLEPSVVVALCDRRNGVGADGVIGLDAHD------AM 54

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            + N DGS  +  GNG+RC+   +T         FET  G  + +               
Sbjct: 55  VLYNADGSRAEMSGNGLRCLGHLVTEERGVGEVAFETDAGRRIYRRVGRE---------- 104

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                                +GPV+       + V  GNPH +  +        L    
Sbjct: 105 ------------GGSVLGATTMGPVSVRANERGWFVDAGNPHEVRQLASPQELASLDVAS 152

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   + +GVN+  A V + + + +R +ERGVG T ACG+ + A  VA        R
Sbjct: 153 LGRCAQAHYPQGVNVEWAVVLAPDEVVMRVFERGVGETEACGTGSTAVAVALASAGLVER 212

Query: 245 A-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             V V+  GG L +E  +   V + G ++      +D++  
Sbjct: 213 TSVRVRNPGGALTVEVTEPEPV-LVGPSRLVASVDVDVEAL 252


>gi|47096661|ref|ZP_00234248.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854]
 gi|254899284|ref|ZP_05259208.1| diaminopimelate epimerase [Listeria monocytogenes J0161]
 gi|254912577|ref|ZP_05262589.1| diaminopimelate epimerase [Listeria monocytogenes J2818]
 gi|254936903|ref|ZP_05268600.1| diaminopimelate epimerase [Listeria monocytogenes F6900]
 gi|47014983|gb|EAL05929.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609501|gb|EEW22109.1| diaminopimelate epimerase [Listeria monocytogenes F6900]
 gi|293590566|gb|EFF98900.1| diaminopimelate epimerase [Listeria monocytogenes J2818]
          Length = 329

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 124/317 (39%), Gaps = 28/317 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHD-NITSDA----INALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D         + +        L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRTDFAIKLCDRKHSLGGADGILYVTKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +      +R++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATSLGF 121

Query: 117 SVDMGEPILDW-----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
            +   +  +       + +P+    +K+             F      VS+ NPH I FV
Sbjct: 122 DIPTYQVEISPVKFASETLPMHVGVEKLFNQVIPELDAELAF----SAVSVPNPHLITFV 177

Query: 172 EDDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +  +          +   +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A 
Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237

Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL---- 279
            A  +    L        ++V   GG + +    +    +   + G A    +G +    
Sbjct: 238 SACSLIKKMLDHDTFETPLNVYNDGGRVQVTAKKDIAGEISLQLIGNATFVSKGSVRYEN 297

Query: 280 DIKTGKWIKKNEDDEAY 296
           D+ T    +   +   Y
Sbjct: 298 DVVTELTNEATAEQAQY 314


>gi|331695957|ref|YP_004332196.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190]
 gi|326950646|gb|AEA24343.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190]
          Length = 291

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 102/292 (34%), Gaps = 21/292 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLI------- 52
           M S  + FAK  G  N  +V+       +++   + A          D ++ +       
Sbjct: 1   MSSG-IRFAKGHGTENDFVVLPDPEGALDLSPARVAAVCDRRRGLGADGVLRVVRWAAAG 59

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                    V+ F+   N DGS  + CGNG+R   R+L               G  +A  
Sbjct: 60  PDVPAPVPGVEWFMDYRNGDGSVAEMCGNGVRVFARYLALEA-----LLPDGPGAELALG 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
            R G  +V           + +     ++  +                 V +GNPH    
Sbjct: 115 TRGGVRTVRFAGGDGADGEVSVGMGVARVGDES---TATVRGHAYAGVAVDVGNPHLACV 171

Query: 171 VEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
              D         G      P +F  GVN+      S + + +R  ERGVG T +CG+  
Sbjct: 172 TAADAGALAALDLGVPPGHDPALFPHGVNVEFVTPVSGDEVTMRVHERGVGETRSCGTGT 231

Query: 230 CASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            A+VVA+      +R  V V   GG L +    +    + G A     G++D
Sbjct: 232 VAAVVAALRAAGRDRGTVGVTTPGGRLRVTVEPDGSTVLQGPAVVLAHGEID 283


>gi|309811271|ref|ZP_07705060.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185]
 gi|308434753|gb|EFP58596.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185]
          Length = 290

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 99/289 (34%), Gaps = 16/289 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57
           + F K  G  N  +++       ++T + +  L         D ++ +    +       
Sbjct: 4   IHFTKGHGTQNDFVLVPDESGELDLTPEQVAYLCHRHAGIGADGVIRVVRTANVPEVAHL 63

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                 F+   N DGS  + CGNG R    +L SR                A      ++
Sbjct: 64  APQATWFMDYRNADGSLAEMCGNGTRVFAEYLRSRGLVSGDEGAPFVIATRAGLKEMVAV 123

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                  +  W+L   A   ++   D                 + +GNPH +  +   ++
Sbjct: 124 PRGWAVDLGQWRL-ARAEEAERRGMDSVVQ-VHGSPDPLPALSLDLGNPHTVVALPPSVH 181

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
              L    +     P   +G N+          + +R  ERG G T +CG+ A A+ +A+
Sbjct: 182 LSALD-LSDAPHIDPHPEQGSNVEFVHAIEHAHIGMRVHERGSGETRSCGTGAAAAALAT 240

Query: 237 GCLHKTNR---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                         V +LGG L +       V ++G A    +G++D+ 
Sbjct: 241 WWWGGQPADQVDWRVDVLGGTLGVHIKGT-EVALSGPAVLVADGEIDLS 288


>gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974]
 gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974]
          Length = 306

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 96/300 (32%), Gaps = 27/300 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFD--------------QIM 50
           V F K  G  N  +++        ++++ +  +         D                +
Sbjct: 13  VPFGKGHGTQNDFVLLADPDAKLRLSAERVARICDRRAGIGGDGLLRAARAGALLAEGEI 72

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                     D F+   N DG  VQ CGNG R    FL +         E     ++   
Sbjct: 73  AALPEGVGEEDWFMDYRNADGGAVQMCGNGARVFAHFLRANG------LEERDEHVIGTR 126

Query: 111 NRDGSISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
                + +   +       + + R+                   + + F V +GNPH + 
Sbjct: 127 AGAKRVRLLAFDRGSAEVEVEMGRARVGGRSAASLPAEGTEGRRVFDGFAVDVGNPHLVC 186

Query: 170 -FVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
                 L                 +F EGVN+      S E   LR  ERGVG T ACG+
Sbjct: 187 LAPALGLDGLAGLDLARQPEYDRDVFPEGVNIEFVVPHSPEKATLRVHERGVGETKACGT 246

Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            + A        L      V+V   GG + +    +    ++G +     G+ D+  G+W
Sbjct: 247 GSVAVAAVVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEFDL--GQW 304


>gi|219683324|ref|YP_002469707.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620974|gb|ACL29131.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 300

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 33/301 (10%)

Query: 1   MQSSMVDFAKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF---- 55
           +   M+   K +G GN  +   D  G H     D I           D ++ I       
Sbjct: 3   LPEHMI---KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVA 59

Query: 56  ----------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI 105
                     +   V+ F+   N DG+  + CGNG R   +FL  +   +    E     
Sbjct: 60  DLDGHDAQKMRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLE---LEEGDAF 116

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
            +        I+     P L  +L  +   S+     D + +             V MGN
Sbjct: 117 KLGTRAGVKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDMGN 176

Query: 165 PHAIFFVEDDLYHYDLA---SFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTW 215
           PH +  VED      +             P    G N+  AR         L    +R +
Sbjct: 177 PHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRVY 236

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           ERG G T ACG+  CA+ +      + +    +++ GG + ++  D+  V +TG A    
Sbjct: 237 ERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALTA 294

Query: 276 E 276
           E
Sbjct: 295 E 295


>gi|315038092|ref|YP_004031660.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112]
 gi|312276225|gb|ADQ58865.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112]
          Length = 334

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +              D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  D    
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEND---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171
                P    ++ P+     A  F  +  DR     V  L+       +++ NPH I FV
Sbjct: 117 FAKDVPAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             +     +       L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H     T+  + V   GG +  + H +N+   + +TG A   +  ++ I 
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294

Query: 283 TGKWIKKNEDD 293
                + N ++
Sbjct: 295 ENDLHRNNLEN 305


>gi|227877369|ref|ZP_03995440.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01]
 gi|256842927|ref|ZP_05548415.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN]
 gi|256848698|ref|ZP_05554132.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US]
 gi|262045894|ref|ZP_06018858.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US]
 gi|293381823|ref|ZP_06627795.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1]
 gi|295692734|ref|YP_003601344.1| diaminopimelate epimerase [Lactobacillus crispatus ST1]
 gi|312978253|ref|ZP_07789996.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05]
 gi|227863037|gb|EEJ70485.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01]
 gi|256614347|gb|EEU19548.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN]
 gi|256714237|gb|EEU29224.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US]
 gi|260573853|gb|EEX30409.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US]
 gi|290921609|gb|EFD98639.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1]
 gi|295030840|emb|CBL50319.1| Diaminopimelate epimerase [Lactobacillus crispatus ST1]
 gi|310894772|gb|EFQ43843.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05]
          Length = 334

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 138/321 (42%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           M++  K+ G  N   ++D       ++   +   +              D +++++    
Sbjct: 1   MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
           ++    +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +  +D    
Sbjct: 61  SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFH--IGPVNHLFLRNPFVVSMGNPHAIFF 170
                P    ++ P+     A  FD + ++R      P  +  LR   +         F 
Sbjct: 117 FASNVPAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFV 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            + ++    L   G    + +P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQAEITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCL----HKTNRAVSVKMLGGGLL--IEWHDNNH-VFMTGEAKKEWEGKL--- 279
            A+ +A           N  +SV   GG +   + +  N++ + + G A      KL   
Sbjct: 237 SATSLALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEA 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++ G +    I+K  +  AY
Sbjct: 297 DLRKGDFSNVQIQKTAEQSAY 317


>gi|227552371|ref|ZP_03982420.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330]
 gi|257886457|ref|ZP_05666110.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733]
 gi|257895055|ref|ZP_05674708.1| diaminopimelate epimerase [Enterococcus faecium Com12]
 gi|293377960|ref|ZP_06624141.1| diaminopimelate epimerase [Enterococcus faecium PC4.1]
 gi|227178492|gb|EEI59464.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330]
 gi|257822511|gb|EEV49443.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733]
 gi|257831620|gb|EEV58041.1| diaminopimelate epimerase [Enterococcus faecium Com12]
 gi|292643507|gb|EFF61636.1| diaminopimelate epimerase [Enterococcus faecium PC4.1]
          Length = 266

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L   +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISV--DM 120
              N DGS    CGNG+RC  R++  + +     F  ET+ G                DM
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDM 112

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + I  A+S+   +++    G            + +G  H + FVE+       
Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVENSREEVW- 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           K +   V V +  G L+I     + + M G A  EW 
Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977]
 gi|229813233|sp|B1MD00|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium
           abscessus]
          Length = 295

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/306 (19%), Positives = 111/306 (36%), Gaps = 42/306 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           + F K  G  N  +V+       +++  A+ AL         D ++ +            
Sbjct: 1   MKFTKGHGTQNDFVVLPDVHIKRDLSVAAVQALCDRQRGLGADGVLRVTTVGAALEGGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                  +S D F+   N DGS  + CGNG+R    +L S     R  F   ++ G    
Sbjct: 61  AEKPAGVSSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP-VNHLFLRNPFVVSMGNPH- 166
           + N               W  +    + D      F  G  +      +   + +GNPH 
Sbjct: 121 RINS--------------WSQLTADVTVDMGPVKEFGAGEAIVGGRRFSGLAIDVGNPHL 166

Query: 167 -AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS---LESLDLRTWERGVGLT 222
             +  V        L     +     +F +GVN+ +    S     ++ +R  ERGVG T
Sbjct: 167 ACVDAVLTTEQLRILDVGAPVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGVGET 226

Query: 223 AACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+   A+  A+   + +    V V + GG + +     +  F+ G +    +G++  
Sbjct: 227 RSCGTGTVAAAYAALRHIGQRTGEVVVNIPGGQVRVTVTGESS-FLRGPSMLLADGEI-- 283

Query: 282 KTGKWI 287
            + +W 
Sbjct: 284 -SDEWW 288


>gi|256375576|ref|YP_003099236.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827]
 gi|255919879|gb|ACU35390.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827]
          Length = 272

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 104/294 (35%), Gaps = 35/294 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64
           V+F K  G  N  +V+       ++T   + AL         D ++ +          F+
Sbjct: 3   VEFLKGHGTENDFVVLPDVDNELDLTEGRVRALCDRQRGLGADGVLRVVRLDLGP--WFM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG+R   R+L S        FE  T  G      + DGS++V MG 
Sbjct: 61  DYRNADGSIAEMCGNGVRVFARYLVSAGLAPEGEFEIATRAGKRAVTAHPDGSVTVGMGP 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
             L  +   +    +                      V +GNPH       D+    L  
Sbjct: 121 VRLTGESTAVLGGVEFA-----------------GVGVDVGNPHLACV--TDVPVAGLDL 161

Query: 183 FGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVGLTAACGSAACASVVAS 236
                    +F  GVN+    V           L +R  ERGVG T +CG+   A+V + 
Sbjct: 162 RDAPSHDAALFPAGVNVEFVNVLADGGMNGAGELRMRVHERGVGETRSCGTGTVAAVASW 221

Query: 237 GC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
                +   A  V + GG + +   +     +TG A     G+LD     W   
Sbjct: 222 LRGTGRATGAADVLVPGGRVRVTVDEGGS-TLTGPAVLLARGELD---RSWWDA 271


>gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940]
 gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940]
          Length = 276

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 101/287 (35%), Gaps = 28/287 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI-------HDFQD 57
           + FAK  G  N  ++I+       ++S+ +  L         D ++ +           +
Sbjct: 1   MKFAKGHGTENDFVIIEDHEGTLELSSERVRVLCDRRAGIGGDGLLRVVRAGALGEPVAE 60

Query: 58  --ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD 113
             A  D F+   N DGS  + CGNG R    ++ SR     +SF   T  G      +  
Sbjct: 61  GIAPADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQVTVHSF 120

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVE 172
                      +    +    +   +  +                 V MGNPH A     
Sbjct: 121 DE-HDAQVSVEMGPAEVTGVSTASMVGEN------------FAGLGVDMGNPHLAAVIPG 167

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-A 231
                    +F      H  F  GVN+ +       ++ +R +ERGVG T +CG+    A
Sbjct: 168 LTPESLADMAFAQPEFDHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGTGTVAA 227

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           +  A     +    V V + GG + +E  D     +TG ++   EG 
Sbjct: 228 ARAALADAGEGAGTVIVNVPGGQVQVEIFDGGS-RLTGPSRIVAEGT 273


>gi|170781617|ref|YP_001709949.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189082830|sp|B0RHB0|DAPF_CLAMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|169156185|emb|CAQ01327.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 292

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 100/300 (33%), Gaps = 34/300 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF--------- 55
           + F K +G GN  ++        ++T   + AL         D  +              
Sbjct: 4   LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSSRIPEGRAA 63

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
             +D   + F+   N DGS  + CGNG+R    FL           E   G  V    R 
Sbjct: 64  LDEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENG-----LIELPPGRTVPIGTRA 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G   V             +      +      +   +    R    + +GNPH +  +  
Sbjct: 119 GVRDVQRSGSGFQ-----VDLGRWALAGGEPLVRAKDLQVARPGLGIDVGNPHVVVALSS 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGS 227
           +      A         P  +EG N+ +              + +R  ERG G T +CG+
Sbjct: 174 E-DELAEADLAFAPQLDPEPAEGANVELVVPADPLIVDGVGHITMRVHERGSGETLSCGT 232

Query: 228 AACASVVASGCLHKTNRA--VSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
            A A+ +A              V++ GG L +      D  HV ++G A+  ++G + + 
Sbjct: 233 GAAAAALAIRHWAGAAAPHQWRVQLPGGVLGVRMFPTEDGEHVGLSGPAELVFDGVVALA 292


>gi|327183370|gb|AEA31817.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1118]
          Length = 334

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +              D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  D    
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEND---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171
                P    ++ P+     A  F  +  DR     V  L+       +++ NPH I FV
Sbjct: 117 FAKDVPAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             +     +       L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H     T+  + V   GG +  + H +N+   + +TG A   +  ++ I 
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIY 294

Query: 283 TGKWIKKNEDD 293
                + N ++
Sbjct: 295 ENDLHRNNLEN 305


>gi|148273202|ref|YP_001222763.1| diaminopimelate epimerase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166224255|sp|A5CSL3|DAPF_CLAM3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|147831132|emb|CAN02084.1| dapF [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 292

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 34/300 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF--------- 55
           + F K +G GN  ++        ++T   + AL         D  +              
Sbjct: 4   LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAA 63

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
             +D   + F+   N DGS  + CGNG+R    FL           E   G  +    R 
Sbjct: 64  LEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENG-----LIELPPGRTIPIGTRA 118

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
           G   V             +     ++      +   +    R    + +GNPH +  +  
Sbjct: 119 GVRDVQRSGSGFQ-----VDLGRWELAGGEPLVRAKDLQVARPGLGIDVGNPHVVVALSS 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGS 227
           +      A    +    P  + G N+ +              + +R  ERG G T +CG+
Sbjct: 174 E-DELAEADLAFVPQLDPEPAAGANVELVVPADPLVVDGVGHITMRVHERGSGETLSCGT 232

Query: 228 AACASVVASGCLHKTNRA--VSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282
            A A+ +A+             V++ GG L +      D  HV ++G A+  ++G + + 
Sbjct: 233 GAAAAALATRHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELVFDGVVALA 292


>gi|257892664|ref|ZP_05672317.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408]
 gi|257829043|gb|EEV55650.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L   +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISV--DM 120
              N DGS    CGNG+RC  R++  + +     F  ET+ G                DM
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDM 112

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + I  A+S+   +++    G            + +G  H + FVE +      
Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVE-NAREEVW 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           K +   V V +  G L+I     + + M G A  EW 
Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|257897663|ref|ZP_05677316.1| diaminopimelate epimerase [Enterococcus faecium Com15]
 gi|257835575|gb|EEV60649.1| diaminopimelate epimerase [Enterococcus faecium Com15]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L   +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV--DM 120
              N DGS    CGNG+RC  R++  + +     F  ET+ G                DM
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDM 112

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + I  A+S+   +++    G            + +G  H + FVE +      
Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVE-NAREEIW 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           K +   V V +  G L+I     + + M G A  EW 
Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|227535765|ref|ZP_03965814.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244253|gb|EEI94268.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 259

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 109/284 (38%), Gaps = 39/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R      +++A              D +ML+      + D  
Sbjct: 5   IKFYKYQGAGNDFILIDNRKAVFERSNEAFVKQLCDRRFGVGADGLMLLQ--DTKNFDFE 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG E   CGNG RC+V F     +  +   F  + G   A+ +    +++ M +
Sbjct: 63  MVYYNADGREGSMCGNGGRCIVAFARDLNIIGEDAAFLAVDGPHQAQIHD-NQVNLQMID 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                K                           + +V++ G+PH I  V D         
Sbjct: 122 VDQISKD-------------------------ESAYVLNTGSPHFIKIVSDLKNMDVYQE 156

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +        EG+N++           +RT+ERGV   T ACG+ A A+ +A      
Sbjct: 157 GYTIRNNATYKKEGINVNFVEKE-ENGYFVRTFERGVEDETFACGTGATAAAMAIAIEEN 215

Query: 242 TNRAVS--VKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279
               +   +++LGG L I +  N H    V++ G A   +EG +
Sbjct: 216 MEGQIEIPIRVLGGQLYISFLKNGHTFREVYLKGPANYVFEGNI 259


>gi|153003485|ref|YP_001377810.1| diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5]
 gi|152027058|gb|ABS24826.1| Diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 104/284 (36%), Gaps = 22/284 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M    + F K  G+GN  +V+D      +      +          D ++ +   + +  
Sbjct: 2   MHGVPLSFVKYHGLGNDFIVVDGPLMDPDRARRLCDR---RRGIGADGVLTVLPPRTSGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A + I N DGS    CGNG+RCV R L               G LV   +      V  
Sbjct: 59  AATMHIFNSDGSVAAMCGNGVRCVARHLAETRGL--------SGALVIDTDSGPKRCVVH 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P      + +      +  D                 VSMGNPHA+ F          
Sbjct: 111 RTPAGVPSAVSVEMGPAAVQGDEELRAGGE---TVRAVRVSMGNPHAVLFDTPTRERASA 167

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
                          GVN+  AR      +DL  WERG GLT ACG+ ACA+ VAS    
Sbjct: 168 IGPLLER----AVPGGVNVGFARP-GPHGIDLVVWERGAGLTDACGTGACAAAVASVRAG 222

Query: 241 --KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
             K    V V++ GG L I    +   V M G A + + G+ D+
Sbjct: 223 AVKAETPVEVRLPGGALEITVGADLVRVTMRGPAARVFAGETDL 266


>gi|86152715|ref|ZP_01070920.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612449|ref|YP_001001171.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006064|ref|ZP_02271822.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166224254|sp|A1W1D0|DAPF_CAMJJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85843600|gb|EAQ60810.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249735|gb|EAQ72694.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  G++ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   + + G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFAYKNEELFFEGKVKYCFEANYN 247


>gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum
           SK141]
 gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum
           SK141]
 gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 286

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 97/299 (32%), Gaps = 36/299 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           + FAK  G  N  ++++       +  + + AL         D ++ +   +        
Sbjct: 1   MKFAKGHGTENDFVIVEDHAAATPLAPERVAALCDRRAGIGGDGLLRVVRAEALLAAGEI 60

Query: 57  ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                  A  D F+   N DGS  + CGNG R    +L SR   +   FT  T  G    
Sbjct: 61  EALAEGIAPTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +              D +   +       +        +         V       A 
Sbjct: 121 TVH------------SCDEQAAEVTVEMGPAEVTGVSTASMAGESYAGLGVDMGNPHLAA 168

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D       +F   +     F  GVN+ +        + +R +ERGVG T +CG+ 
Sbjct: 169 VVPGLDAEGLAAKTFEQPVIDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETRSCGTG 228

Query: 229 ACASVVASGCLHKTNR------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             A+  A+      +        V V + GG + ++ ++     +TG +     G+  +
Sbjct: 229 TVAAATAALADAAVDHTTTPHGTVHVHVPGGEVTVDIYEGGS-RLTGPSAIVATGETSL 286


>gi|157415749|ref|YP_001483005.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047186|sp|A8FNJ1|DAPF_CAMJ8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|157386713|gb|ABV53028.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748391|gb|ADN91661.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931036|gb|EFV10011.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 327]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F+    K   + +F T  G++ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   + + G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFAYKNEELFFEGKVKYCFEANYN 247


>gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152]
 gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152]
          Length = 302

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 103/307 (33%), Gaps = 38/307 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           ++F K  G  N  +V+       ++T   + AL         D ++ +            
Sbjct: 9   IEFTKGHGTENDFVVLPDEDVRLDLTPARVAALCDRQRGLGADGVLRVARAGALLRAGVL 68

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVA 108
                  +  D F+   N DGS  + CGNG+R    +   T R +       +  G    
Sbjct: 69  DALPAGVSDTDWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPV 128

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +  G    ++   +              +      +    +  L     V   +   +
Sbjct: 129 TVHAAGPTHGEVTVAM---------GEVRALGASTATVAGWGYSGL--GIDVGNPHLACV 177

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGVGLTAACGS 227
                      L    +      +F  GVN+ I      +  +D+R +ERGVG T +CG+
Sbjct: 178 DPTLTAEALAKLDLTVSPGYDPDLFPHGVNVEILTPLDEQRAVDMRVYERGVGETRSCGT 237

Query: 228 AACASVVA-----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
              A+  A        L   + AV+V++ GG + +   +    ++ G +     G+L   
Sbjct: 238 GTVAAAAAALSAEGFELATGSGAVTVRVPGGAVRVGL-EAGSAWLRGPSVLVATGRL--- 293

Query: 283 TGKWIKK 289
           T  W + 
Sbjct: 294 TADWWQT 300


>gi|289435361|ref|YP_003465233.1| hypothetical protein lse_2000 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171605|emb|CBH28151.1| dapF [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 332

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 26/316 (8%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDN--THFDQIMLIHDFQ 56
           + + F K+ G  N   ++D    + +       +D    L    +     D I+ +    
Sbjct: 2   ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           +A     ++++N DGS    CGNG+R V R+L  +        ET++ IL  K+      
Sbjct: 62  EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLTEAKVETMKAILDVKKASSLGF 121

Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
            +   +  +      L +   +       +              VS+ NPH I FV+  +
Sbjct: 122 DIPTYQVEISPVNFNLKSLPMNLPVEKLINQVVPELDAELAFSAVSVPNPHLIAFVDQAV 181

Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
                     +    ++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  
Sbjct: 182 LDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSEDAIYVRTFERGVGFTNACGTAMSACS 241

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKE------WEG-KLD 280
           +    L +      ++V   GG + +   ++      + + G A         ++G +++
Sbjct: 242 LIKKMLDRDVLEIPLNVYNDGGRVQVTAKEDAEGELSLQLIGNATFVNVGTVSYDGDEVE 301

Query: 281 IKTGKWIKKNEDDEAY 296
             T +      +  +Y
Sbjct: 302 PLTNE---ATPEQASY 314


>gi|293571377|ref|ZP_06682407.1| diaminopimelate epimerase [Enterococcus faecium E980]
 gi|291608516|gb|EFF37808.1| diaminopimelate epimerase [Enterococcus faecium E980]
          Length = 266

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     +   S    +L   +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYTEDTNY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV--DM 120
              N DGS    CGNG+RC  R++  + +     F  ET+ G                DM
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDM 112

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G P    + I  A+S+   +++    G            + +G  H + FVE +      
Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVE-NAREEVW 166

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
              G L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS   +    
Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226

Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           K +   V V +  G L+I     + + M G A  EW 
Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|86149276|ref|ZP_01067507.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596665|ref|ZP_01099902.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563124|ref|YP_002344903.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|22256740|sp|Q9PMD8|DAPF_CAMJE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|85840058|gb|EAQ57316.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191506|gb|EAQ95478.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360830|emb|CAL35631.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926730|gb|ADC29082.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 249

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 101/278 (36%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   + + G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFAYKNEELFFEGKVKYCFEANYN 247


>gi|269219568|ref|ZP_06163422.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210810|gb|EEZ77150.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 331

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 101/317 (31%), Gaps = 58/317 (18%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQD---------- 57
            K  G GN  +++       ++ ++A+            D ++ +               
Sbjct: 12  TKAHGTGNDFILVPDFAGTLDLPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVARD 71

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               + F+   N DGS  Q CGNG+R  V +L  +        +  R + VA      ++
Sbjct: 72  FPEAEWFMDYRNADGSIAQMCGNGLRVFVHYLRIQGVID---LKPGRSVTVATRGGVKAV 128

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           S D     +D           + D        V  +  R    V+M NPH +  ++    
Sbjct: 129 SFDGAVYTIDMGE----YGLPRGDAGDDTRVAVPGVGERPALSVTMPNPHTVVLLD-SAE 183

Query: 177 HYDLASFGNLLAKHPMFSEGVNLS--IARVTSL--------------------------- 207
               A         P+  EG NL   +A                                
Sbjct: 184 ELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRADQGLA 243

Query: 208 -------ESLDLRTWERGVGLTAACGSAACASVVA-SGCLHKTNRAVSVKMLGGGLLIEW 259
                      +R  ERGVG T ACG+  CA+ +A      +    V ++  GG L +  
Sbjct: 244 DRSVSPSNPALMRVLERGVGETLACGTGTCAAALAVLLSRGEREGEVRLRSPGGPLTVRI 303

Query: 260 HDNNHVFMTGEAKKEWE 276
            +    F+TG A    E
Sbjct: 304 -EGGRAFLTGPAVLVAE 319


>gi|69244869|ref|ZP_00603093.1| Diaminopimelate epimerase [Enterococcus faecium DO]
 gi|257879078|ref|ZP_05658731.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933]
 gi|257882114|ref|ZP_05661767.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502]
 gi|257889909|ref|ZP_05669562.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410]
 gi|258615458|ref|ZP_05713228.1| diaminopimelate epimerase [Enterococcus faecium DO]
 gi|260562742|ref|ZP_05833237.1| diaminopimelate epimerase [Enterococcus faecium C68]
 gi|293563573|ref|ZP_06678021.1| diaminopimelate epimerase [Enterococcus faecium E1162]
 gi|294622606|ref|ZP_06701603.1| diaminopimelate epimerase [Enterococcus faecium U0317]
 gi|314947847|ref|ZP_07851254.1| diaminopimelate epimerase [Enterococcus faecium TX0082]
 gi|68196223|gb|EAN10653.1| Diaminopimelate epimerase [Enterococcus faecium DO]
 gi|257813306|gb|EEV42064.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933]
 gi|257817772|gb|EEV45100.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502]
 gi|257826269|gb|EEV52895.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410]
 gi|260072901|gb|EEW61261.1| diaminopimelate epimerase [Enterococcus faecium C68]
 gi|291597911|gb|EFF29036.1| diaminopimelate epimerase [Enterococcus faecium U0317]
 gi|291604575|gb|EFF34061.1| diaminopimelate epimerase [Enterococcus faecium E1162]
 gi|313645827|gb|EFS10407.1| diaminopimelate epimerase [Enterococcus faecium TX0082]
          Length = 266

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L T +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDIDGLIAVKIDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS    CGNG+RC  R++  +       F         K              +
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                 P     ++    +     +N   +    +        +F    +         G
Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGEKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243
            L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K + 
Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V V +  G L+I     + + M G A  EW 
Sbjct: 231 DQVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261


>gi|183602361|ref|ZP_02963727.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191285|ref|YP_002968679.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196691|ref|YP_002970246.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218280|gb|EDT88925.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249677|gb|ACS46617.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251245|gb|ACS48184.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794278|gb|ADG33813.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 294

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 103/297 (34%), Gaps = 33/297 (11%)

Query: 5   MVDFAKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF-------- 55
           M+   K +G GN  +   D  G H     D I           D ++ I           
Sbjct: 1   MI---KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDG 57

Query: 56  ------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                 +   V+ F+   N DG+  + CGNG R   +FL  +   +    E      +  
Sbjct: 58  HDAQKMRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLE---LEEGDAFKLGT 114

Query: 110 ENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                 I+     P L  +L  +   S+     D + +             V MGNPH +
Sbjct: 115 RAGVKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDMGNPHVV 174

Query: 169 FFVEDDLYHYDLA---SFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTWERGV 219
             VED      +             P    G N+  AR         L    +R +ERG 
Sbjct: 175 TVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRVYERGC 234

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           G T ACG+  CA+ +      + +    +++ GG + ++  D+  V +TG A    E
Sbjct: 235 GETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALTAE 289


>gi|325956545|ref|YP_004291957.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC]
 gi|325333110|gb|ADZ07018.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC]
          Length = 334

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 28/311 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T + +   +              D ++ I+    
Sbjct: 1   MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQIGILNGADGVLAINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L   +  D    
Sbjct: 61  KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEND---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171
                P    ++ P+     A  F  +  DR     V  L+       +++ NPH I FV
Sbjct: 117 FAKDVPAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
             +     +       L +++P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H     T+  + V   GG +  + H +N+   + +TG A   +  ++ I 
Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294

Query: 283 TGKWIKKNEDD 293
                + N ++
Sbjct: 295 ENDLHRNNLEN 305


>gi|323466764|gb|ADX70451.1| Diaminopimelate epimerase [Lactobacillus helveticus H10]
          Length = 340

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L               D +++++D   
Sbjct: 7   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTVKLTDPKTGLLGGADGVLVVNDPVR 66

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D    
Sbjct: 67  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 122

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170
                P    ++ P+     A  FD +  DR   G  P  +  LR   +         F 
Sbjct: 123 FASNVPAFAVEISPVHFNKEALPFDNLGHDRLIDGFAPELYQGLRFSSIAVPNPHLISFV 182

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G     K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 183 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 242

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279
            A+ +A         + +  ++V   GG +  I  ++NN+  + + G A    +  +   
Sbjct: 243 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENNNYWIELIGNATFTHQISIDEE 302

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++   +    I +  +  AY
Sbjct: 303 DLRNSNFATAQITETNEQNAY 323


>gi|327440160|dbj|BAK16525.1| diaminopimelate epimerase [Solibacillus silvestris StLB046]
          Length = 320

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 18/290 (6%)

Query: 6   VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +   K+ G GN   + +       N  + A       ++   D ++++     A  DA +
Sbjct: 3   IQLTKVHGSGNTFYLYEALYDEQFNFVNIAKQLCHHSNDGGADGLLIVLPSSVA--DAKM 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-----ISVD 119
           R+IN DGSE   CGNG+RCV R++  ++       ET+   L  K            SV+
Sbjct: 61  RVINADGSEASMCGNGLRCVARYVCEKLNVDEAVIETMHACLKVKREASIFEQLPTYSVE 120

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +     +   +P+     +  R          +       +S+ NPH I  V+       
Sbjct: 121 ISPISFELVSLPMKVENRQQLRHEIIPAFSMDI---PFTAISVPNPHLIGIVDHKYMENT 177

Query: 180 LASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           L        L +++    +GVN+S  +  S + + +RT+ERGVG T ACG+A  AS + +
Sbjct: 178 LHQEQLAAYLNSENEYCPDGVNVSYVQPLSPDEIFVRTFERGVGFTNACGTAMTASALIA 237

Query: 237 GCLHK-TNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282
                 TN  V+V   GG +  E  +    +   + G A    + + D++
Sbjct: 238 SIEGFITNSKVTVYNPGGFVQCEVKNCGDSWELALIGNATVLGDYEYDLQ 287


>gi|145636697|ref|ZP_01792364.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
 gi|145270223|gb|EDK10159.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
          Length = 171

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 7/177 (3%)

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
           +V     D  I V+MGEPI +   IP        ++   +      +       VSMGNP
Sbjct: 1   MVLTVKDDNQIRVNMGEPIWEPAKIPFTA-----NKFEKNYILRTDIQTVLCGAVSMGNP 55

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           H +  V+ D+   ++   G+LL  H  F E VN    ++ + E + LR +ERG G T AC
Sbjct: 56  HCVVQVD-DIQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQAC 114

Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           GS ACA+V         N  V V + GG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 115 GSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 171


>gi|271963764|ref|YP_003337960.1| diaminopimelate epimerase [Streptosporangium roseum DSM 43021]
 gi|270506939|gb|ACZ85217.1| Diaminopimelate epimerase [Streptosporangium roseum DSM 43021]
          Length = 268

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 107/288 (37%), Gaps = 32/288 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           + F K  G  N  +++        + +  +  +         D ++ +   +        
Sbjct: 1   MRFVKGHGTENDFVILPDPDGELELPAALVARVCDRRAGIGADGVLRVMRTKLSPEVADQ 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG 114
               + F+   N DG   + CGNG+R   R+           F   T  G+   +    G
Sbjct: 61  AGEAEWFMDYRNSDGGAAEMCGNGVRVFARYLVDAGLAGAGEFGVATRGGVRRVRLAETG 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG P               + R R  +    +  LR    V MGNPH    + D 
Sbjct: 121 DVTVDMGTP-------------RLLGRSRTTVAGQEYEGLR----VDMGNPHLACAIGDP 163

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASV 233
           +   DL+           F  GVN+ +        + +R +ERG G T +CG+    ++V
Sbjct: 164 VAQLDLSHQPAFD--PEAFPSGVNIELLNPVGPRRIVMRVFERGSGETRSCGTGAVASAV 221

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+    +T    +V++LGG + +   +    ++ G A     G L +
Sbjct: 222 AAAHLAGETTGTWAVEVLGGTVTVTLDERTS-YLAGPAVLVASGDLSL 268


>gi|293556548|ref|ZP_06675118.1| diaminopimelate epimerase [Enterococcus faecium E1039]
 gi|291601293|gb|EFF31575.1| diaminopimelate epimerase [Enterococcus faecium E1039]
          Length = 266

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L T +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS    CGNG+RC  R++  +       F         K              +
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                 P     ++    +     +N   +    +        +F    +         G
Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGDKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243
            L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K + 
Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V V +  G L+I     + + M G A  EW 
Sbjct: 231 DQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261


>gi|260101786|ref|ZP_05752023.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075]
 gi|260084430|gb|EEW68550.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075]
          Length = 355

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L               D +++++D   
Sbjct: 22  MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 81

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D    
Sbjct: 82  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 137

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRF-------HIGPVNHLFLRNPFVVSMGNPHAIFF 170
                P    ++ P+  + + +  D            P  +  LR   +         F 
Sbjct: 138 FASNVPAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLISFV 197

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G     K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 198 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 257

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLD-- 280
            A+ +A         + +  ++V   GG +  I  ++N +  + + G A    +  +D  
Sbjct: 258 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 317

Query: 281 -IKTGKW----IKKNEDDEAY 296
            ++   +    I +  +  AY
Sbjct: 318 YLRNSNFATAQITETTEQNAY 338


>gi|256847132|ref|ZP_05552578.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715796|gb|EEU30771.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN]
          Length = 336

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 28/312 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  NK  ++D       +T   + AL+              D ++++++   
Sbjct: 1   MVQLLKVHGSQNKFFILDQTTLQQQLTDSELVALTKQITNPQTGILHGADGLLVVNNSNH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V A +R+IN DGSE   CGNG+R V R++  +  + SF  ET    + A         
Sbjct: 61  PGVTAQMRVINTDGSEASMCGNGIRTVARYVAEKTGQDSFKIET----MKADLKVAKHDE 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI-FF 170
              G P    ++ P+        FD +  +R     V  L  +     +++ NPH I F 
Sbjct: 117 FADGVPAYAAEISPVLFDKHDLPFDHLGHERIIDDYVPELAPKLKFTSLAVPNPHLIAFM 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E  +    L   G     K+P +S+GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 DEQTITGPLLGKLGRRLNGKNPYYSDGVNVNFAKIIDHNQLFVRTFERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282
            A+ +A    H      ++ ++V   GG +    H+++    + + G A      ++D+ 
Sbjct: 237 SATTLAFALTHPDMADFDQPITVYNPGGMVKTIVHNDDDQYWIELIGNATVTE--QIDVS 294

Query: 283 TGKWIKKNEDDE 294
                + N  D 
Sbjct: 295 EQVLHEANVTDS 306


>gi|171742433|ref|ZP_02918240.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC
           27678]
 gi|171278047|gb|EDT45708.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC
           27678]
          Length = 299

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 100/299 (33%), Gaps = 34/299 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V          T+D +  L         D ++ +   QD          
Sbjct: 8   YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  + F+   N DGS  + CGNG R +  F   +        E  R    A     
Sbjct: 68  DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVK-- 125

Query: 114 GSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
             I   +GE     K +      S+ + D D + +             V MGNPH +  +
Sbjct: 126 --ILTSLGEVEGLGKDVFRVEMGSWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVAVI 183

Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222
           ED    L   +           P      N+                  +R  ERG G T
Sbjct: 184 EDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGET 243

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A     GK+++
Sbjct: 244 LSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVEL 298


>gi|153951653|ref|YP_001398825.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166224253|sp|A7H5P5|DAPF_CAMJD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|152939099|gb|ABS43840.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 249

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 97/277 (35%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ +S A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSSLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K      F T  G++ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPSMIFLTGAGVIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   +   G PH + F +       L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFEKLG------KTWQLCDTGVPHLVHFCQS------LDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             V +    G  +   + N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGEEMGFAYKNEELFFEGKVKYCFEANYN 247


>gi|283956902|ref|ZP_06374375.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791628|gb|EFC30424.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 249

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ +  A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSVLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  G++ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +       G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQFCDTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|261208138|ref|ZP_05922813.1| diaminopimelate epimerase [Enterococcus faecium TC 6]
 gi|289566338|ref|ZP_06446767.1| diaminopimelate epimerase [Enterococcus faecium D344SRF]
 gi|293567983|ref|ZP_06679322.1| diaminopimelate epimerase [Enterococcus faecium E1071]
 gi|294614569|ref|ZP_06694474.1| diaminopimelate epimerase [Enterococcus faecium E1636]
 gi|294618663|ref|ZP_06698198.1| diaminopimelate epimerase [Enterococcus faecium E1679]
 gi|314939327|ref|ZP_07846573.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04]
 gi|314941269|ref|ZP_07848163.1| diaminopimelate epimerase [Enterococcus faecium TX0133C]
 gi|314950673|ref|ZP_07853751.1| diaminopimelate epimerase [Enterococcus faecium TX0133A]
 gi|314992038|ref|ZP_07857489.1| diaminopimelate epimerase [Enterococcus faecium TX0133B]
 gi|314998018|ref|ZP_07862911.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01]
 gi|260077722|gb|EEW65438.1| diaminopimelate epimerase [Enterococcus faecium TC 6]
 gi|289161847|gb|EFD09718.1| diaminopimelate epimerase [Enterococcus faecium D344SRF]
 gi|291589306|gb|EFF21115.1| diaminopimelate epimerase [Enterococcus faecium E1071]
 gi|291592550|gb|EFF24154.1| diaminopimelate epimerase [Enterococcus faecium E1636]
 gi|291595092|gb|EFF26434.1| diaminopimelate epimerase [Enterococcus faecium E1679]
 gi|313587977|gb|EFR66822.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01]
 gi|313593359|gb|EFR72204.1| diaminopimelate epimerase [Enterococcus faecium TX0133B]
 gi|313597095|gb|EFR75940.1| diaminopimelate epimerase [Enterococcus faecium TX0133A]
 gi|313599870|gb|EFR78713.1| diaminopimelate epimerase [Enterococcus faecium TX0133C]
 gi|313641418|gb|EFS05998.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04]
          Length = 266

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L T +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS    CGNG+RC  R++  +       F         K              +
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                 P     ++    +     +N   +    +        +F    +         G
Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGEKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243
            L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K + 
Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V V +  G L+I     + + M G A  EW 
Sbjct: 231 DQVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261


>gi|68536187|ref|YP_250892.1| diaminopimelate epimerase [Corynebacterium jeikeium K411]
 gi|260578884|ref|ZP_05846789.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734]
 gi|68263786|emb|CAI37274.1| dapF [Corynebacterium jeikeium K411]
 gi|258602974|gb|EEW16246.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734]
          Length = 288

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 91/290 (31%), Gaps = 23/290 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI----------- 52
           M++F K  G  N  +V+       N+T D +  L+        D ++ +           
Sbjct: 1   MIEFIKAHGTENDFVVLMDEATQVNLTEDRVRHLADRRAGIGGDGVIRVATGDALVGAGV 60

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                      + F+   N DGS  + CGNG+R     L  + K             +  
Sbjct: 61  LAGLPAGVHGDEWFMDYRNADGSLAEMCGNGVRAFAHVLCRQGK-----VTVGEQFGIGT 115

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
                 + V           I                   +         +   +  A+ 
Sbjct: 116 RAGRKMVEVHELSGENQEHAIVSVEMGAPEVLGVSTAQVGDLKVAGLGVDMGNPHLAAVV 175

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWERGVGLTAACGSA 228
                L    L     +      F  GVNL +        ++ +R  ERGVG T +CG+ 
Sbjct: 176 PNLTALELQKLPIDQQVQFDTEFFPAGVNLEVLTPLDNAGAVHMRVHERGVGETRSCGTG 235

Query: 229 ACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             A+ V++          V+V + GG + +E  ++  V + G +     G
Sbjct: 236 TVAAAVSALADAELATGTVTVHVPGGTVQVEISEDGSV-LRGPSAIVAWG 284


>gi|161507352|ref|YP_001577306.1| diaminopimelate epimerase [Lactobacillus helveticus DPC 4571]
 gi|160348341|gb|ABX27015.1| Diaminopimelate epimerase [Lactobacillus helveticus DPC 4571]
          Length = 334

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L               D +++++D   
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D    
Sbjct: 61  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170
                P    ++ P+     A  FD +  DR      P  +  LR   +         F 
Sbjct: 117 FASNVPAFAVEISPVHFNKEALPFDNLGHDRLIDDFAPELYQGLRFSSIAVPNPHLISFV 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G     K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279
            A+ +A         + +  ++V   GG +  I  ++N +  + + G A    +  +   
Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++   +    I +  +  AY
Sbjct: 297 DLRNSNFATAQITETTEQNAY 317


>gi|227549099|ref|ZP_03979148.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078828|gb|EEI16791.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 266

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 20/278 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
           ++F K  G  N  +V+        ++   + AL         D ++ + +        F+
Sbjct: 3   IEFLKGHGTENDFVVVPDPADALTLSEAEVAALCDRRAGIGGDGLLRVVEHD---GRWFM 59

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNG+R     L +      + F  +T  G+   +  +          
Sbjct: 60  DYRNVDGSIAEMCGNGVRVFAHVLVAEGLVTEREFDVDTRAGLKHIEVLQA--------- 110

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
              D     +     +++        +         V       A           D   
Sbjct: 111 ---DSTDATVKVGMGRVEVTGVSTARMGDFDFAGLGVDVGNPHLAAVIPGLTAAELDAMQ 167

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
           F      H  F EGVN+ +    +   + +R WERGVG T +CG+   A+  A+      
Sbjct: 168 FAQPAFDHSFFPEGVNVEVLTELNDGHVHMRVWERGVGETHSCGTGTVAAARAALADAGV 227

Query: 243 NR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
               V+V + GG + +E   +    MTG +K    G +
Sbjct: 228 ENGTVTVNVPGGAIEVELS-DGEALMTGPSKIVARGTV 264


>gi|225351502|ref|ZP_03742525.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157846|gb|EEG71129.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 299

 Score =  129 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 99/299 (33%), Gaps = 34/299 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V          T+D +  L         D ++ +   Q           
Sbjct: 8   YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                + D F+   N DGS  + CGNG R +  F   +        E  R    A     
Sbjct: 68  VCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVK-- 125

Query: 114 GSISVDMGEPILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
             +   +G+     K +           D D + +             V MGNPH +  +
Sbjct: 126 --VLTSLGDVPTLGKDVFQVEMGSWKRGDLDGYEVTIPGTAGSARGTFVDMGNPHVVAVI 183

Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222
           ED    L   +           P      N+            +  +  +R  ERG G T
Sbjct: 184 EDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSEGDNEGNATMRVNERGCGET 243

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+  CA+ +        +   ++ + GG L ++  DN+ V +TG A     GK+++
Sbjct: 244 LSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDND-VKLTGSATIV--GKIEL 298


>gi|227833311|ref|YP_002835018.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184295|ref|ZP_06043716.1| diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975]
 gi|254767098|sp|C3PGX6|DAPF_CORA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|227454327|gb|ACP33080.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975]
          Length = 278

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 95/292 (32%), Gaps = 30/292 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  ++++  G    +  + + AL         D ++ I            
Sbjct: 1   MKFAKGHGTENDFVIVEGTG---PLPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEI 57

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                   + D F+   N DGS  + CGNG R    ++ SR   +  TF         + 
Sbjct: 58  DELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLLEEDTFTVGTRAGAKQV 117

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                   +    +       L  S   M  + F    V+        V+          
Sbjct: 118 TVHSFSETEAEVSVEMGPAQVLGVSTASMAGESFAGLGVDMGNPHLAAVIPGLTA----- 172

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
                           +     F  GVN+ +        + +R +ERG G T +CG+   
Sbjct: 173 -----EDLAAKRLEQPVFDADFFPAGVNVELVTPLCDGVIHMRVFERGSGETRSCGTGTV 227

Query: 231 -ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            A+  A     +    V V + GG + +E  ++    +TG ++    G+  +
Sbjct: 228 AAACAALADASQVTGHVRVIVPGGEVEVEITEDGS-TLTGPSRIVATGETSL 278


>gi|257883704|ref|ZP_05663357.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501]
 gi|257819542|gb|EEV46690.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501]
          Length = 266

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+   K  G GN  +++D     D   S    +L T +    D ++ +           +
Sbjct: 1   MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEM 52

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS    CGNG+RC  R++  +       F         K              +
Sbjct: 53  IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                 P     ++    +     +N   +    +        +F    +         G
Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGDKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243
            L+  HP+F E  N++   V + + L +RT+ERGVG T ACG+  CAS V +    K + 
Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V V +  G L+I     + + M G A  EW 
Sbjct: 231 DQVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261


>gi|157272213|gb|ABV26738.1| diaminopimelate epimerase [Lactobacillus helveticus CNRZ32]
 gi|328468528|gb|EGF39533.1| diaminopimelate epimerase [Lactobacillus helveticus MTCC 5463]
          Length = 334

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       ++ + +  L               D +++++D   
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++ +F  +T+   L  +++ D    
Sbjct: 61  ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRF-------HIGPVNHLFLRNPFVVSMGNPHAIFF 170
                P    ++ P+  + + +  D            P  +  LR   +         F 
Sbjct: 117 FASNVPAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLISFV 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L   G     K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLD-- 280
            A+ +A         + +  ++V   GG +  I  ++N +  + + G A    +  +D  
Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 296

Query: 281 -IKTGKW----IKKNEDDEAY 296
            ++   +    I +  +  AY
Sbjct: 297 YLRNSNFATAQITETTEQNAY 317


>gi|305680693|ref|ZP_07403500.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266]
 gi|305658898|gb|EFM48398.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266]
          Length = 305

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 98/302 (32%), Gaps = 40/302 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52
           + + F K  G  N  +++       ++T   I  L         D I+ +          
Sbjct: 12  TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 71

Query: 53  ---HDFQD----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIR 103
              ++       +  D F+   N DGS  + CGNG R    ++ SR       FT  T  
Sbjct: 72  LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 131

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G      +     +  +   +              +      +G   +        V MG
Sbjct: 132 GAKPVTVHSFDDDNAVVSVAM---------GPATSLGESTCSMGGRMY----AGMGVDMG 178

Query: 164 NPH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERG 218
           NPH A              +          F EGVN+ +    +         +R +ERG
Sbjct: 179 NPHLACVVPGLTAEALADLTLDRPEFDAEFFPEGVNVEVLTELAHSPEGYRTHMRVYERG 238

Query: 219 VGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VG T +CG+    A+  A       N  V V++ GG + +    +    + G +     G
Sbjct: 239 VGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSALVATG 297

Query: 278 KL 279
           +L
Sbjct: 298 EL 299


>gi|323340626|ref|ZP_08080878.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644]
 gi|323091749|gb|EFZ34369.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644]
          Length = 341

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 136/322 (42%), Gaps = 36/322 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITS-----DAINALSTDDNT--HFDQIMLIHDFQDA 58
           ++  K+ G GN   ++D       I+       AI             D I+ +      
Sbjct: 16  MELIKVHGSGNDFFILDQEKLGRKISETELKQLAIKVCDRKHGFHGGADGILCVLPETRG 75

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113
            V   +R+IN DGSE   CGNG+R V R+L+ +  +KSF   T+   L  ++  +     
Sbjct: 76  DVLGRMRVINADGSEASMCGNGLRTVARYLSEKNGKKSFKVATMYADLEVEQANELAPGV 135

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            + +V++         + +    +++  D+  +      F      V++ NPH I FV+ 
Sbjct: 136 KTFAVEISPVSFSADDLKMHVGKEELHEDKLEMLSDELKF----SAVAVPNPHLISFVDH 191

Query: 174 DL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +          +      ++ +F +GVN+S   + S + + +RT+ERGVG T ACG+A  
Sbjct: 192 ETLVSEDLGRIASYLNDGENALFPDGVNVSFVEILSEDEIFVRTYERGVGYTNACGTAMS 251

Query: 231 ASVVASGCLHKTNRA-----VSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKLDI 281
           AS +    L KT+       +SVK  GG +   +   ++ + FM+  G      +  + +
Sbjct: 252 ASSL-MYVLEKTDGKGFEKTLSVKNPGGMVKTIVHRKEDGNYFMSLIGNGTFVAKCTVSL 310

Query: 282 K-------TGKWIKKNEDDEAY 296
                   +    ++  +  +Y
Sbjct: 311 DEALLGDFSAATWEETGEQASY 332


>gi|152965469|ref|YP_001361253.1| diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]
 gi|151359986|gb|ABS02989.1| Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216]
          Length = 319

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 104/308 (33%), Gaps = 40/308 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56
           + F K  G  N  +++       N T+D + A+         D ++              
Sbjct: 7   LAFTKGHGTENDFVLVADPDGVWNPTADVVAAICDRRAGVGGDGLIRAVRSSAVPDAAGT 66

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAK 109
               + F+   N DGS  + CGNG+R    F              + F   T  G+   +
Sbjct: 67  APGAEWFMDYRNSDGSLAEMCGNGVRVFAEFLLRNRLLPEEAGDGRWFDVATRSGVKRLR 126

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              DG  + D+G   L      L    D        + P      R    V +GNPH + 
Sbjct: 127 READGQWTADLGPWALTGGDDALGAGSDA-----LVLVPGLDAVARPALSVDLGNPHTVV 181

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-----------SLESLDLRTWERG 218
            +  D      A         P+  +G N+ +                +  + +R  ERG
Sbjct: 182 AL-PDEAELAAADLTRAPEVRPVPPQGTNVELVVPLLAFDVTGDDVPDIGEIAMRVHERG 240

Query: 219 VGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-----NHVFMTGEA 271
            G T +CG+ ACA+ +A+             V + GG L++            V+++G A
Sbjct: 241 SGETRSCGTGACAAALATRAWAGRGAPDVWRVDVPGGRLVVTVGAGSSLAQGTVWLSGPA 300

Query: 272 KKEWEGKL 279
           +    G L
Sbjct: 301 QLVATGVL 308


>gi|299821568|ref|ZP_07053456.1| diaminopimelate epimerase [Listeria grayi DSM 20601]
 gi|299817233|gb|EFI84469.1| diaminopimelate epimerase [Listeria grayi DSM 20601]
          Length = 329

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 119/314 (37%), Gaps = 25/314 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAIN----ALSTDDN--THFDQIMLIHDFQDA 58
           + F K+ G  N   +ID       + T          +    +     D ++ +    +A
Sbjct: 3   LTFIKVHGSQNDFFIIDEIDNRIVDWTDVNRRIFTKQICDRSHELGGADGVLFVSASINA 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-----D 113
                +R+ N D SE   CGNG+R V R+L  +   K    ET++  L   +        
Sbjct: 63  GAAYKMRVFNSDTSEASMCGNGLRTVARYLLEKEDEKQLIVETMKANLEVAQAESLGFGI 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            +  V++   + + + +P   +   +  +       N L      V +      +   + 
Sbjct: 123 PTYQVEISPVLFEPEALPFHYNGKAVFNEPIPELD-NELAFSTVAVPNPHLISFVDQEQL 181

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           D    +  +       +P F +GVN+S  +  + + + +RT+ERGVG T ACG+A  AS 
Sbjct: 182 DSDKQETLASYLNGE-NPYFPDGVNVSFVKRLAADKIYVRTFERGVGFTNACGTAMSASS 240

Query: 234 VASGCLHK--TNRAVSVKMLGGGLLI--EWHDNN--HVFMTGEAKKEWEGKLDIKTGKWI 287
           +    L          V   GG + +  E  D+    + + G A     G +     + I
Sbjct: 241 LIKKQLDDDTLEAVTHVYNDGGRVQVTAEQADDGTYKLHLIGNATFTKTGIVRFDEAEGI 300

Query: 288 -----KKNEDDEAY 296
                K+  ++E Y
Sbjct: 301 SVIQAKETGEEENY 314


>gi|269127488|ref|YP_003300858.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183]
 gi|268312446|gb|ACY98820.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183]
          Length = 273

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 109/296 (36%), Gaps = 36/296 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS----- 59
           + F K  G  N  +++       ++    + AL         D ++ +   + A      
Sbjct: 1   MRFIKGHGTENDFVILPDPDGALDLRPATVAALCDRRAGIGADGVLRVVRTKAAGDPIAE 60

Query: 60  -----VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENR 112
                 + F+   N DGS  + CGNG+R   R+           +   T  G+       
Sbjct: 61  ELAGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEWDVATRAGLRRVTLGP 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G +SVDMG P++  +                               VSMGNPH    V+
Sbjct: 121 SGDVSVDMGAPLVQGR-----------------GRARLAGEDFTGLRVSMGNPHLACPVD 163

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             +   DL     +  +   F +GVN+ + R+     +++R  ERG G T +CG+ A A+
Sbjct: 164 RPVAELDLTRPPQVDERD--FPDGVNVELFRIVGDRQVEMRVHERGSGETRSCGTGAVAT 221

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            VA+     +     + + GG + +         + G A    EG++      W++
Sbjct: 222 AVAAAGEDPSPGEWIIDVPGGRVTVTLDGRTS-HLRGPAVLVAEGEIR---ADWLR 273


>gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
 gi|227903732|ref|ZP_04021537.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796]
 gi|58254473|gb|AAV42710.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
 gi|227868619|gb|EEJ76040.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796]
          Length = 334

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 25/317 (7%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D     +++T   + A +              D +++I+    
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELDNSLTDKELRAFTKKITNPKTGILNGADGVLVINKSVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA--KENRDGS 115
            +  A +R+IN DGSE   CGNG+R V R+L+ + ++  F  +T+   L    +EN    
Sbjct: 61  KNSLAQMRVINEDGSEASMCGNGLRTVARYLSEKYQKDHFLIDTMNASLRVHKEENFAKG 120

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174
           +     E              +                      +++ NPH I FV  + 
Sbjct: 121 VPAYSVEISPVRFNKEALPFTNLGHNRLIDTFVPEIYPGLRFTSIAVPNPHLINFVNQEQ 180

Query: 175 LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           +    L + G      +P F++GVN++ A++     L +RT+ERGVG T ACG+   A+ 
Sbjct: 181 IAGPILGNIGKRLNDNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGMSATS 240

Query: 234 VASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL---DIKT 283
           +A    H      N  + V   GG +  + H ++    + +TG A       +   D++ 
Sbjct: 241 LALLLTHPDMVDINSKIDVFNPGGMVQTKVHYDDSTYWIELTGNATITHHIIISKSDLRN 300

Query: 284 GKW----IKKNEDDEAY 296
             +    I + ++ +AY
Sbjct: 301 NNFANVQISETKEQQAY 317


>gi|296269114|ref|YP_003651746.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833]
 gi|296091901|gb|ADG87853.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833]
          Length = 270

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 32/286 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56
           + F K  G  N  ++I        ++ + + A+         D ++ +           Q
Sbjct: 1   MRFVKGHGTENDFVIIPDPEGRLELSPETVAAICDRRTGIGGDGVLRVVPTARCPEVADQ 60

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG 114
               + F+   N DGS  + CGNG+R   R+L          F   T  G+   +   +G
Sbjct: 61  AGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEFGVATRAGVRRVRIAAEG 120

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++VDMG P               +   R  +    +  L     VSMGNPH    +ED 
Sbjct: 121 DVTVDMGRP-------------RVLGESRTAVDGREYQGLG----VSMGNPHLACLIEDP 163

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +   DL+          +F +GVN+ +  +T    + +R +ERG G T +CG+ A A+ V
Sbjct: 164 VAGLDLSR--PPRFDAAVFPDGVNVELFNLTGDHRVTMRVYERGSGETRSCGTGAVATAV 221

Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A+           +V++ GG + +        ++TG A     G++
Sbjct: 222 AAARAVGEETGTWAVRVPGGVVTVTLDATTS-WLTGPAVLVASGEI 266


>gi|256786059|ref|ZP_05524490.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289769955|ref|ZP_06529333.1| diaminopimelate epimerase [Streptomyces lividans TK24]
 gi|289700154|gb|EFD67583.1| diaminopimelate epimerase [Streptomyces lividans TK24]
          Length = 266

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 101/282 (35%), Gaps = 25/282 (8%)

Query: 6   VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K+ G GN  +++        ++ + +A    +       D +++     D+     
Sbjct: 1   MRFRKIHGAGNDFILLSNLGLDYDNDWSKEAERLCARRTGVGADGLVISRLINDSPAVLE 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N D S    CGN +RC           +  +     G++      D S+ V     
Sbjct: 61  VACFNADSSVATMCGNALRCSAWAAHRDHGFQQMSLRM-AGVVHEAVVSDESVWVTAEVG 119

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            +  + +    +      D  H                 G  H +  V+D      +   
Sbjct: 120 AVLPRRLQAVINGRPTWFDSAH----------------TGTEHVVAIVDDVDAIDAVMVG 163

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
             +     +   G N++  + T  ++L LRT+ERGV   T +CGS A A+VV +      
Sbjct: 164 RLVRHHIDLAPLGTNVNFVQSTGQQALKLRTYERGVEAETLSCGSGAVAAVVVATMRGLV 223

Query: 243 NRA-VSVKMLGGG-LLIEWHD---NNHVFMTGEAKKEWEGKL 279
            R  V+V    G  L +  HD   N   ++ G     +EG L
Sbjct: 224 ARRAVTVHNRAGEPLTVRPHDARPNRTHWVGGPVTHTFEGVL 265


>gi|312880978|ref|ZP_07740778.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
 gi|310784269|gb|EFQ24667.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260]
          Length = 275

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 28/269 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61
           M  +AK+ G GN  LV+D+RG      +  ++A      +++   D ++L+     + ++
Sbjct: 1   MTRYAKLHGNGNDFLVLDLRGTPGEGKDHAAEARALCRREESLGADGLLLVESS--SRLN 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC+ R+   + +      FET+ G + A+ +         
Sbjct: 59  FRMRLFNRDGSEGEMCGNGARCIARYAWETGIAPAEMAFETLGGDVHARVDAPF------ 112

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                    + L  +   +    +               +++G PH + F+E DL     
Sbjct: 113 ---------VRLRLAEVDLGDATWERKTSAGGQELAYSFLTVGVPHCVVFLE-DLATRPR 162

Query: 181 ASFGNLLA----KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235
                L      +  +F  G N++           + T+ERGV  LT +CG+ + A+ V 
Sbjct: 163 EELFRLGRELRGRTDLFPRGTNVNFLAPEKEGLFLI-TYERGVEDLTRSCGTGSVAAAVT 221

Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH 264
           +  L +    V V+ LGG   +   D+  
Sbjct: 222 ARRLGRCGDDVKVRNLGGINRVLLEDSGP 250


>gi|331702340|ref|YP_004399299.1| diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929]
 gi|329129683|gb|AEB74236.1| Diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929]
          Length = 330

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57
           MV   K+ G  NK  ++D       ++   + AL+              D +++I D   
Sbjct: 1   MVQLLKVHGSQNKFFILDQTALQTKLSQPELVALAKHITEPETGLLDGADGLLVIDDSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  +  F  ET+   L           
Sbjct: 61  PDTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKFGKDQFKVETMDSDLHVHRE----AD 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +    P    ++ P+  + + +  D        +              +S+ NPH I FV
Sbjct: 117 LADNVPTFSVEISPVTFAKETLPFDNLGTDTLINKAVPEFAPGLKFTAISVPNPHLISFV 176

Query: 172 EDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
           +++ ++   L   G +    +P F +GVN+S A++    +L +RT+ERGVG T ACG+  
Sbjct: 177 DEETMHSKTLGQLGKMLNDPNPYFPDGVNVSFAQILDHNTLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKL--- 279
            A+ +A    H      +  +SV   GG +        D   + + G A    + ++   
Sbjct: 237 SATSLAFCLNHPEMADFDELISVYNPGGMVKTRVHSRDDTFSIDLIGNATFTHKIEIPEA 296

Query: 280 DIKTGKWI----KKNEDDEAY 296
           D+           + ++  AY
Sbjct: 297 DLHANDLEHAQVTETDEQPAY 317


>gi|153876715|ref|ZP_02003894.1| diaminopimelate epimerase [Beggiatoa sp. PS]
 gi|152066821|gb|EDN66106.1| diaminopimelate epimerase [Beggiatoa sp. PS]
          Length = 300

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 18/263 (6%)

Query: 36  NALSTDDNT-HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94
                       D I+   +    +VD  +R+ N DGSE + CGNG+RC+ RF   ++ +
Sbjct: 12  KIFCDRAGILGADGILFFQNSD--NVDGKMRMFNPDGSEAEMCGNGLRCIGRFACEQLGQ 69

Query: 95  KSFTFETIRGILVAKENRDGS-----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
                ET++G+      ++          ++    L+ K IP+   F+ + +        
Sbjct: 70  NLVFIETLKGVSRVVNEKNIHPGVATYKAELNTISLNTKDIPINVHFESLIKQPLSTLSN 129

Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
              F      VSM NPH +  V++                  +F  GVN++  +V    +
Sbjct: 130 KLTF----TAVSMPNPHIVAMVDNISDDELGQIGKKANEIKELFPNGVNVNFCQVIGEAA 185

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN---- 263
           + +RT+ERGVGLT +CGS   ++ + +  L +   ++ + V   GG +  E   NN    
Sbjct: 186 IYVRTYERGVGLTNSCGSGMSSASLVACLLEQCSYDKPIDVYNRGGLVQCEVKKNNSHHY 245

Query: 264 HVFMTGEAKKEWEGKLDIKTGKW 286
            VF++G A   ++  +  ++  +
Sbjct: 246 SVFLSGNATFIFKNTITYESPNF 268


>gi|296129405|ref|YP_003636655.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109]
 gi|296021220|gb|ADG74456.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109]
          Length = 321

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 101/301 (33%), Gaps = 28/301 (9%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ---DASVDAF- 63
            K  G  N  +++D R    ++    +  L         D ++ +   +   DA  DA  
Sbjct: 22  TKGHGTQNDFVLLDDRDGALDLAPVLVRRLCDRRAGVGGDGVIRLVASELVPDAPDDARG 81

Query: 64  ----IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSIS 117
               +   N DGS  Q CGNG+R   R+         +    E      V          
Sbjct: 82  TAWFMDYRNGDGSVAQMCGNGVRVFARYAQHLGLWDPEDGPLEVGTRAGVRTVVATAPEV 141

Query: 118 VDMGEPILDWKLIPLARSFDKM---DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            D     +   ++ L    D +        H+G +          V   +   +   E D
Sbjct: 142 GDGPWFTVGMGVVTLVGGDDALASGGDAEVHVGGLAVTRPGLSVDVGNPHTVVVLAQEGD 201

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGVGLTAAC 225
           L   DL S   +    P+ ++G N+ +      E          + +R  ERGVG T +C
Sbjct: 202 LEQADLTSAPVV---RPVPADGTNVELVVPLGEEHAADGTAVGRVRMRVHERGVGETRSC 258

Query: 226 GSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           G+ A A+  A              V + GG + +  H +    + G A    E ++D+  
Sbjct: 259 GTGAVAAAAAVRAWGGPQAPAVWLVDVPGGTVRVTLHPDGRADLAGPAVLVAEARVDLAA 318

Query: 284 G 284
            
Sbjct: 319 L 319


>gi|332188875|ref|ZP_08390581.1| diaminopimelate epimerase [Sphingomonas sp. S17]
 gi|332011084|gb|EGI53183.1| diaminopimelate epimerase [Sphingomonas sp. S17]
          Length = 311

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 18/291 (6%)

Query: 6   VDF--AKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDN-THFDQIMLIHDFQDASV 60
           + F   K  G GN   +ID R    +    A    AL+        D ++L+        
Sbjct: 1   MRFAIVKCHGSGNDFPMIDARALSLSEAEWAGVARALADRAGPVGGDGLLLLVPGDH-HA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           +  + + N DGSE ++C NG+RCV R     +   + T         A  + D    V  
Sbjct: 60  EFGMVMRNSDGSEAETCLNGVRCVARAGFEALGIDAATVRLKTSYATAVRDEDLMPGVYT 119

Query: 121 GEPILDWKLI-----PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
                    +     P+  + D++  D   +        R    V+M NPH + FVE   
Sbjct: 120 VRETAGPAGLSTAAWPIHGAPDRLVEDVLPMLDR----ARRFTAVTMPNPHLVHFVETVD 175

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
               +       A      +  N+S   V   ++L +RT+ERGVGLT +CGSA  AS  A
Sbjct: 176 EAELVRLGEICEAGPDWLPQRANVSFVEVRG-DTLFVRTFERGVGLTDSCGSAMAASTYA 234

Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           +    +   +    V   GG +     ++  V ++G A  EW G +++  G
Sbjct: 235 ACLTGRIAWDSTTVVFNRGGLVRAFAGEDGMVTLSGNATYEWAGSVEVDLG 285


>gi|306822343|ref|ZP_07455722.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679]
 gi|309802151|ref|ZP_07696260.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022]
 gi|304554341|gb|EFM42249.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679]
 gi|308221231|gb|EFO77534.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022]
          Length = 299

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 100/301 (33%), Gaps = 38/301 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V          T+D +  L         D ++ +   QD          
Sbjct: 8   YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  + F+   N DGS  + CGNG R +  F   +            G    +    
Sbjct: 68  DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQG------LADRPGGEPFRLGTR 121

Query: 114 GSISVDMGEPILD--WKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           G + +      ++   K +      S+ + D D + +             V MGNPH + 
Sbjct: 122 GGVKILTSLGEVEGLGKDVFRVEMGSWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVA 181

Query: 170 FVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVG 220
            +ED    L   +           P      N+                  +R  ERG G
Sbjct: 182 VIEDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCG 241

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            T +CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A     GK++
Sbjct: 242 ETLSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVE 297

Query: 281 I 281
           +
Sbjct: 298 L 298


>gi|86152026|ref|ZP_01070239.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841134|gb|EAQ58383.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 249

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   +   G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQ------NLDEFN 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|283953844|ref|ZP_06371374.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794623|gb|EFC33362.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414]
          Length = 249

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 95/277 (34%), Gaps = 32/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     D  ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFIIANANEKQDR-STLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS    CGNG R    F     K        + G  + K N +            
Sbjct: 58  FYNNDGSRAPMCGNGSRAAAHFAHHINKIN-PNMSFLTGAKIIKANVNH----------- 105

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               + ++    K  ++ F          +   +   G PH + F E      +L  F  
Sbjct: 106 --DRVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCE------NLDEFDT 151

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           +L +        N++  ++    SL +RT+ERGV   T ACG+   A    +    K   
Sbjct: 152 ILCQKMRQKYNANVNFVKILDKNSLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQN 211

Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
            V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 212 EVKITPKSGE-EVRFKYKNEELFFEGKVKYCFEANYN 247


>gi|57238549|ref|YP_179680.1| diaminopimelate epimerase [Campylobacter jejuni RM1221]
 gi|81557401|sp|Q5HSQ5|DAPF_CAMJR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|57167353|gb|AAW36132.1| diaminopimelate epimerase [Campylobacter jejuni RM1221]
 gi|315058979|gb|ADT73308.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni S3]
          Length = 249

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   +   G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|224282550|ref|ZP_03645872.1| Diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287012|ref|YP_003938270.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17]
 gi|313139704|ref|ZP_07801897.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
 gi|309250948|gb|ADO52696.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17]
 gi|313132214|gb|EFR49831.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171]
          Length = 299

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 92/296 (31%), Gaps = 36/296 (12%)

Query: 9   AKMEGIGNKIL-VIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF----------- 55
            K    GN  +  +D        T+D +  L         D ++ +              
Sbjct: 8   TKAHATGNDFIAYLDS-DGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQV 66

Query: 56  ---QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA---K 109
               D   + F+   N DGS  + CGNG R +  F        +   E  R    A    
Sbjct: 67  AACDDGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQRCGVASTQVEEPFRLGTRAGVKT 126

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
               G ++    +            S+ + D D F +             V MGNPH + 
Sbjct: 127 LRPLGDVAPYGRDVFRV-----DMGSWRRGDLDAFTVTIPGTPGAARGTFVDMGNPHVVC 181

Query: 170 FVEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVG 220
            +ED +                  P+     N    RV             +R  ERG G
Sbjct: 182 VIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGTGEATMRVNERGCG 241

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            T +CG+  CA+ +        +    + + GG + ++   +  V +TG A    +
Sbjct: 242 ETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATLVAD 295


>gi|197121022|ref|YP_002132973.1| diaminopimelate epimerase [Anaeromyxobacter sp. K]
 gi|196170871|gb|ACG71844.1| Diaminopimelate epimerase [Anaeromyxobacter sp. K]
          Length = 266

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 109/285 (38%), Gaps = 24/285 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D           A            D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDG---PLMDAERARRICDRRRGVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVD 119
            A + I N DGS    CGNG+RCV R L            +T  G      +R    +V+
Sbjct: 59  TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGADRAVE 118

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                +    +   + F                       VSMGNPHA+ F   +     
Sbjct: 119 AVSVEMGPARLEGEQEFRV------------GGEALRALRVSMGNPHAVLFDAPE----R 162

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
             +         +   GVN+  AR      +DL  WERG GLT ACG+ ACA+ VA+   
Sbjct: 163 ARALAVGPELERLVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAVAAVSR 221

Query: 240 HK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                   V V++ GG L I    +   V M G A++ + G+ D+
Sbjct: 222 GLARAAAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|291456378|ref|ZP_06595768.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213]
 gi|291381655|gb|EFE89173.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213]
          Length = 299

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 96/298 (32%), Gaps = 36/298 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D I  L         D ++ +   +           
Sbjct: 8   TKTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIM 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                  + F+   N DGS  + CGNG R +  F          + F   T  G+ +   
Sbjct: 68  AVQAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILT- 126

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
              G++                   +   + D + +    +        V MGNPH +  
Sbjct: 127 -PRGNVKPYGANVFQVEM-----GEWKIGETDAYEVTIPGNDGSARGTFVDMGNPHVVAV 180

Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESL------DLRTWERGVGL 221
           +ED      +            +P      N+   R+  ++         +R  ERG G 
Sbjct: 181 IEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVNERGCGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+  CA+ +             + + GG L ++  D + V +TG A    +  L
Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDED-VKLTGSATLVADIDL 296


>gi|212715493|ref|ZP_03323621.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661575|gb|EEB22150.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM
           16992]
          Length = 299

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 101/302 (33%), Gaps = 40/302 (13%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V          T+D +  L         D ++ +   Q           
Sbjct: 8   YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108
                + D F+   N DGS  + CGNG R +  F   +        + F   T  G+ V 
Sbjct: 68  VCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVL 127

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               D     +    +          S+   D D + +             V MGNPH +
Sbjct: 128 TSLGDVPALGNDVFQVEM-------GSWKCGDFDGYEVTIPGTAGSARGTFVDMGNPHVV 180

Query: 169 FFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGV 219
             +ED    L   +           P      N+            +  S  +R  ERG 
Sbjct: 181 AVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVRIDEQSEGDNEGSATMRVNERGC 240

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           G T +CG+  CA+ +        +   ++ + GG L ++  D++ V +TG A     GK+
Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDDD-VKLTGSATIV--GKI 296

Query: 280 DI 281
           ++
Sbjct: 297 EL 298


>gi|86156998|ref|YP_463783.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773509|gb|ABC80346.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 266

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 113/284 (39%), Gaps = 22/284 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D         + A            D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A + I N DGS    CGNG+RCV R L               G LV   +         
Sbjct: 59  AATMHIFNSDGSVAAMCGNGIRCVARHLADARGL--------DGDLVLDTDSGPKRCTIH 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P    + + +     +++ ++ +      L       VSMGNPHA+ F   +      
Sbjct: 111 RGPGGAVEAVSVEMGPARLEGEQEYRVGGEAL---RALRVSMGNPHAVLFDAPE----RA 163

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +         +   GVN+  AR      +DL  WERG GLT ACG+ ACA+ VAS    
Sbjct: 164 RALAVGPELERLVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAVASVSRG 222

Query: 241 K--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                  V V++ GG L I    +   V M G A++ + G+ D+
Sbjct: 223 LARAGVPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|319948154|ref|ZP_08022316.1| diaminopimelate epimerase [Dietzia cinnamea P4]
 gi|319438183|gb|EFV93141.1| diaminopimelate epimerase [Dietzia cinnamea P4]
          Length = 319

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 95/294 (32%), Gaps = 34/294 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + F K  G  N  +++       N+    + AL         D I+ I            
Sbjct: 23  IAFLKGHGTLNDFVILPDDHAELNLDETLVRALCDRRGGIGADGILRIATAGALVDRGVL 82

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVA 108
                     D F+   N DGS  + CGNG+R     L +  +    T    T  G   A
Sbjct: 83  PALPDGVDPADWFMDYRNADGSIAEMCGNGVRVFAHALVATHRADIGTIAIGTRSGPRPA 142

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
                      +   + + +L+ L+ +                        V MGNPH  
Sbjct: 143 TIVSRSGDDAVVRVDMGEPRLLGLSSA-------------ELGGRTFAGVAVDMGNPHLA 189

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +    D      L            F  GVN+ IA   +   + +R  ERG G T +CG
Sbjct: 190 CVVPGLDAAALAALPVADPPTFDRDFFPHGVNVEIATPLTGGRVTMRVHERGAGETMSCG 249

Query: 227 SAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +     +V A     + +  V V + GG + +   D     +TG +     G+ 
Sbjct: 250 TGIVATAVAALADAGRGSGDVVVAVPGGEVEVHLADGGS-TLTGPSALVASGRF 302


>gi|300771566|ref|ZP_07081441.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761555|gb|EFK58376.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 259

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 39/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDAF 63
           + F K +G GN  ++ID R       ++A              D +ML+      + D  
Sbjct: 5   IKFYKYQGAGNDFILIDNRNGAFERANEAFIKQICDRRFGVGADGLMLLQ--DTKNFDFE 62

Query: 64  IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           +   N DG E   CGNG RC+V F     + R+   F  + G   A+ +    +++ M +
Sbjct: 63  MVYYNADGREGSMCGNGGRCIVAFARDLDIIRQDAAFLAVDGPHQAQIHD-NQVNLQMID 121

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                K                             +V++ G+PH I  V D         
Sbjct: 122 VDQITKD-------------------------ETAYVLNTGSPHFIKIVSDLKNMDVYKE 156

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
              +       +EG+N++           +RT+ERGV   T ACG+ A A+ +A      
Sbjct: 157 GYTIRNNATYKNEGINVNFVEKE-ENGYFVRTFERGVEDETLACGTGATAAAMAMSIEEN 215

Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279
               +   +++LGG L I +         V++ G AK  +EG +
Sbjct: 216 MEGQIEIPIRVLGGQLYISFFKKGLTFREVYLKGPAKYVFEGNI 259


>gi|148925686|ref|ZP_01809374.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845696|gb|EDK22787.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 249

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSTLAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   +   G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210

Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
             V +    G   + +   N  +F  G+ K  +E   +
Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247


>gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155]
 gi|166225733|sp|A0QVY0|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155]
          Length = 291

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 108/305 (35%), Gaps = 31/305 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----------- 52
           M+ FAK  G  N  +V+       ++T  A+ AL         D ++ +           
Sbjct: 1   MI-FAKGHGTENDFVVLPDLDAALSLTPSAVAALCDRRRGLGADGVLRVTRAGAARAAGV 59

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                   ++ D ++   N DGS  Q CGNG+R    +L +         E+    +V  
Sbjct: 60  FDRLPDGVSAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASG------LESADEFVVGS 113

Query: 110 ENRDGSISVDMGEPIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
                 + +   +P       + +                V      +   V +GNPH  
Sbjct: 114 LAGPRPVVLHGFDPARATTAEVTVEMG---KANQFGAGSAVVGGRSFDGLAVDVGNPHLA 170

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                      L     +     +F +GVN+ +   +   ++ +R  ERGVG T +CG+ 
Sbjct: 171 CVGITADDLAALDVAAPVSFDPALFPDGVNVEVLTASVDGAVSMRVHERGVGETRSCGTG 230

Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+ VA+      +   + V++ GG + +   ++   ++ G +     G+LD     W 
Sbjct: 231 TVAATVAALAHDGADTGTLRVRIPGGEVTVTVTESTS-YLRGPSVLVARGELDPH---WW 286

Query: 288 KKNED 292
                
Sbjct: 287 HAVAG 291


>gi|311063885|ref|YP_003970610.1| diaminopimelate epimerase DapF [Bifidobacterium bifidum PRL2010]
 gi|310866204|gb|ADP35573.1| DapF Diaminopimelate epimerase [Bifidobacterium bifidum PRL2010]
          Length = 299

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 92/296 (31%), Gaps = 36/296 (12%)

Query: 9   AKMEGIGNKIL-VIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF----------- 55
            K    GN  +  +D        T+D +  L         D ++ +              
Sbjct: 8   TKAHATGNDFIAYLDS-DGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQV 66

Query: 56  ---QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR---GILVAK 109
               D   + F+   N DGS  + CGNG R +  F        +   E  R      V  
Sbjct: 67  AACDDGDAEWFMDYRNADGSLAEMCGNGTRAIALFAQRCGVASTQVGEPFRLGTRTGVKT 126

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
               G ++    +            S+ + D D F +             V MGNPH + 
Sbjct: 127 LRPLGDVAPYGRDVFRV-----DMGSWRRGDLDAFTVTIPGTPGAARGTFVDMGNPHVVC 181

Query: 170 FVEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVG 220
            +ED +                  P+     N    RV             +R  ERG G
Sbjct: 182 VIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGAGEATMRVNERGCG 241

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            T +CG+  CA+ +        +    + + GG + ++   +  V +TG A    +
Sbjct: 242 ETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATLVAD 295


>gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765769|dbj|BAF39948.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
          Length = 299

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 97/299 (32%), Gaps = 34/299 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V          T+D +  L         D ++ +   Q           
Sbjct: 8   YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  D F+   N DGS  + CGNG R +  F   +        +             
Sbjct: 68  DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAD----QPGGKPFHLGTRAG 123

Query: 114 GSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
             +   +G+     K +      ++ + D D + +             V MGNPH +  +
Sbjct: 124 VKVLTSLGDVPGLGKDVFQVEMGAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVVAVL 183

Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222
           ED    L + +           P      N+                  +R  ERG G T
Sbjct: 184 EDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGCGET 243

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+  CA+ +        +   ++ + GG L ++  D + V +TG A     GK+++
Sbjct: 244 LSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKIEL 298


>gi|312195029|ref|YP_004015090.1| diaminopimelate epimerase [Frankia sp. EuI1c]
 gi|311226365|gb|ADP79220.1| diaminopimelate epimerase [Frankia sp. EuI1c]
          Length = 340

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 118/330 (35%), Gaps = 60/330 (18%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           V F K +G GN  +++        +T   + AL         D ++ +            
Sbjct: 22  VRFVKGQGTGNDFVIVPDPDGELELTPRLVRALCDRRFGIGADGVLRVVLTAAEPSAAGL 81

Query: 53  ---------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
                                          F+   N DGS  + CGNG+R   R+L   
Sbjct: 82  GNSWAADLPDGRRAPAESRTARPAGAGGARWFMDYRNADGSIAEMCGNGLRVFGRYLVDA 141

Query: 92  MKRKSFTF--ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
              ++      T  G+ +A    +G ++V+MG P +     PL      +    F     
Sbjct: 142 GYERAGLIPVATRAGVRLADVPNEGDVTVEMGPPTIG----PLGAERVSIAGRTFE---- 193

Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--SL 207
                     VSMGNPHA+ F + DL   DL +           +     +   +   + 
Sbjct: 194 -------ATNVSMGNPHAVCFAD-DLAEADLNALDLTRLPQVSPAAYPTGANVEIVIGAP 245

Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHV 265
           +++ +R +ERGVG T +CG+ ACA  VA+           + V + GG + + W  +  V
Sbjct: 246 DAVRMRVYERGVGETLSCGTGACAVAVAAATRAGRGPGTVIPVDVPGGRVTVLWDSDQ-V 304

Query: 266 FMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295
            + G A    EG   +    W+   +   A
Sbjct: 305 RLRGPAVLVSEG---LLRSDWLAAAQAGSA 331


>gi|328957136|ref|YP_004374522.1| diaminopimelate epimerase [Carnobacterium sp. 17-4]
 gi|328673460|gb|AEB29506.1| diaminopimelate epimerase [Carnobacterium sp. 17-4]
          Length = 326

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 120/288 (41%), Gaps = 24/288 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQDA 58
           VD  K+ G  N+  ++D       +T D + +L       +       D ++LI      
Sbjct: 3   VDLIKVHGSENEFFILDETLLERTLTQDELVSLTQIITDRNKGLLKGADGVLLIGTTNHK 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NRD 113
             D  +R+IN DGSE   CGNG+R V R+L+ + K+  F  ET+   L  K+        
Sbjct: 63  ETDGSMRVINYDGSEASMCGNGLRTVARYLSEKNKKNEFVVETMHADLHVKKAEELGKDI 122

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            +  V++     + + +P     +K           N  F      V++ NPH I FV+ 
Sbjct: 123 QTFQVEISPVSFNVENLPFNWESEKFIDQELSELATNLRF----SAVAVPNPHLISFVDH 178

Query: 174 DLYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +  +              +P F +GVN+S   V   +SL +RT+ERGVG T ACG+A  A
Sbjct: 179 ETLYSSQFEDLATYLNGKNPYFPDGVNVSFVEVLDKQSLFVRTFERGVGFTNACGTAMAA 238

Query: 232 SV--VASGCLHKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273
           S          +    + V   GG +   +   ++   +M   G A  
Sbjct: 239 SSLMYVLLKNGQLEEKIQVTNPGGMVQTVVHKDEDGTYWMDLIGNATY 286


>gi|227893381|ref|ZP_04011186.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047]
 gi|227864796|gb|EEJ72217.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047]
          Length = 334

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 33/321 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALST-DDNT--HFDQIMLIHDFQD 57
           MV+  K+ G  N   ++D       +T + +      +S          D +++I+    
Sbjct: 1   MVNLLKVHGSQNHFFILDQTELESPLTDNELKSFTKKISDPKTGLLNGTDGVLVINKPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R+L+ +  + SF  +T+   L  ++++D    
Sbjct: 61  EHALAQMRVINADGSEASMCGNGLRTVARYLSEKYHKTSFLVDTMNASLRVRKDKD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI-FF 170
                P    ++ P+     A  FD +  DR     +  ++       +++ NPH I F 
Sbjct: 117 FAPNVPAFAVEISPVRFNKEALPFDNLGYDRLIDNYIPEIYPGLRFTSIAVPNPHLISFM 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +  +    L + G     K+P F++GVN++ A++     L +RT+ERGVG T ACG+  
Sbjct: 177 NQKQITGPILGTVGKRLNDKNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNH-VFMTGEAKKEWEGKL--- 279
            A+ +A    H      +  +SV   GG +   + + ++ + + + G A       L   
Sbjct: 237 SATSLALVLTHPEMADLDTPISVYNPGGMVKTVVHYEESQYWIELIGNATFTHHLSLDEA 296

Query: 280 DIKTGKW----IKKNEDDEAY 296
           D++TG +    I +  +  AY
Sbjct: 297 DLRTGTFEHVKITETNEQTAY 317


>gi|313123791|ref|YP_004034050.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280354|gb|ADQ61073.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 328

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 131/322 (40%), Gaps = 33/322 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L               D I+ + +   
Sbjct: 1   MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET+         +    +
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETM--YADLAVRQADDFA 118

Query: 118 VDMGEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVE 172
             +    ++   I   +    FD +  +R     V  L     F  +++ NPH I F  E
Sbjct: 119 EGVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKE 178

Query: 173 DDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +DL    L   G     ++P FS+GVN++   +     L +RT+ERGVG T ACG+   A
Sbjct: 179 EDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSA 238

Query: 232 SVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE---------- 274
           S +A       L    + +SV   GG +    H  +H   + + G A +           
Sbjct: 239 SSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPEDQL 298

Query: 275 WEGKLDIKTGKWIKKNEDDEAY 296
             G++ ++  K  K+  +  AY
Sbjct: 299 HSGQVKLEAVK-TKETGEQAAY 319


>gi|296393367|ref|YP_003658251.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985]
 gi|296180514|gb|ADG97420.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985]
          Length = 308

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 92/302 (30%), Gaps = 29/302 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           V F K  G  N  ++I       ++  + +  L         D ++              
Sbjct: 17  VPFVKGHGTQNDFVLIADPDAQLSLGVETVALLCDRRAGIGGDGLIRAARAGALRASGAI 76

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                     D F+   N DG  V+ CGNG R    FL +         E      +   
Sbjct: 77  AQLPDGVGDEDWFMDYRNADGGVVEMCGNGARVFAHFLRALG------LEPRGDYAIGTR 130

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF- 169
                + +   +       + +     ++                +     +GNPH +  
Sbjct: 131 AGAKRVRLLSFD--GGGAEVSVEMGRVRLGGPSATSVAGAPRGCFSGTSADVGNPHLVCL 188

Query: 170 FVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
               DL                 +F EGVN+      S +   LR  ERGVG T ACG+ 
Sbjct: 189 AQGLDLDGLAALDLTRQPDYDKAVFPEGVNIEFVVPHSPDKATLRVHERGVGETKACGTG 248

Query: 229 ACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
           + A+       L   +  V V   GG +      +    + G +     G+ D     W+
Sbjct: 249 SVAAAAVVLAELGSGSGEVVVASPGGVVQAYVGPDGSAVLRGPSALVARGEFD---KAWL 305

Query: 288 KK 289
           ++
Sbjct: 306 QQ 307


>gi|332654264|ref|ZP_08420008.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16]
 gi|332517350|gb|EGJ46955.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16]
          Length = 234

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 23/233 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KMEG+GN  + ++      +++   A+           D ++ I   ++   D  +
Sbjct: 22  MRFTKMEGLGNDYIYLNCLKEVPEDLPGLAVTLSDRHFGVGADGLICIRLGREG--DFTM 79

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            + N DGS    CGNG+RCV +++      ++   T +T  G    + +  G    ++  
Sbjct: 80  EMYNADGSRGAMCGNGIRCVGKYVYDNALTRKTCLTIDTDAGPRFLRLHVLGGQVREVTV 139

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            + + KL P                    +     + V MGNPH + F   +    DL  
Sbjct: 140 DMGEPKLSP-----------------PLEVQGETVYPVDMGNPHGVIFC-PEPEEIDLEV 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
            G  L + P F    N+    V + + L +R WERG G T ACG+ ACA + A
Sbjct: 182 RGAALGRDPAFPGEWNIEFVAVEARDRLRVRVWERGSGPTLACGTGACAVLAA 234


>gi|225021208|ref|ZP_03710400.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945941|gb|EEG27150.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 307

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/302 (19%), Positives = 97/302 (32%), Gaps = 40/302 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52
           + + F K  G  N  +++       ++T   I  L         D I+ +          
Sbjct: 14  TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 73

Query: 53  ---HDFQD----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIR 103
              ++       +  D F+   N DGS  + CGNG R    ++ SR       FT  T  
Sbjct: 74  LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 133

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G      +     +  +   +              +      +G   +        V MG
Sbjct: 134 GAKPVIVHSFDDDNAVVSVAM---------GPATSLGESTCSMGGRMY----AGMGVDMG 180

Query: 164 NPH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERG 218
           NPH A              +          F EGVN+ +              +R +ERG
Sbjct: 181 NPHLACVVPGLTAEALADLTLDRPEFDTEFFPEGVNVEVLTELVHSPEGYRTHMRVYERG 240

Query: 219 VGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277
           VG T +CG+    A+  A       N  V V++ GG + +    +    + G +     G
Sbjct: 241 VGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSALVATG 299

Query: 278 KL 279
           +L
Sbjct: 300 EL 301


>gi|50955208|ref|YP_062496.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648661|sp|Q6AE05|DAPF_LEIXX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|50951690|gb|AAT89391.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 292

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 34/302 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD----- 57
           + + F K +G GN  ++         +++  I  +         D ++     +      
Sbjct: 2   ATLHFTKGQGTGNDFVLYADPDGTLPLSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGA 61

Query: 58  ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111
                  + + F+   N DGS  + CGNG+R  VR+    ++ +         + +   +
Sbjct: 62  EALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRY---LIESRLVQLADGDTLPIGTRS 118

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
               +   +    +D     LA     +               R    + +GNPH +  +
Sbjct: 119 GVRDVQRTLSGFQVDLGRWRLAGGEPLVRAKEL-------PVARLGLGIDLGNPHVVVAL 171

Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAAC 225
             D    + A    +    P    G N+                + +R  ERG G T +C
Sbjct: 172 -ADESELESADLTYIPHLEPAPQGGANVEFVVPHEPLVKDGVGRIRMRVHERGSGETLSC 230

Query: 226 GSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLD 280
           G+ A A+ +A       N      V + GG + +      D  HV ++G A+  + G L+
Sbjct: 231 GTGAAAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVALSGPAELVYTGALE 290

Query: 281 IK 282
           + 
Sbjct: 291 LA 292


>gi|154488994|ref|ZP_02029843.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis
           L2-32]
 gi|154083131|gb|EDN82176.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis
           L2-32]
          Length = 299

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 97/299 (32%), Gaps = 34/299 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V          T+D +  L         D ++ +   Q           
Sbjct: 8   YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  D F+   N DGS  + CGNG R +  F   +        +             
Sbjct: 68  DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAD----QPGGKPFHLGTRAG 123

Query: 114 GSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
             I   +G+     K +      ++ + D D + +             V MGNPH +  +
Sbjct: 124 VKILTSLGDVPGLGKDVFQVEMGAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVVAVL 183

Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222
           ED    L + +           P      N+                  +R  ERG G T
Sbjct: 184 EDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGCGET 243

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+  CA+ +        +   ++ + GG L ++  D + V +TG A     GK+++
Sbjct: 244 LSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKIEL 298


>gi|325125792|gb|ADY85122.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 328

 Score =  126 bits (316), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/323 (25%), Positives = 133/323 (41%), Gaps = 35/323 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L               D I+ + +   
Sbjct: 1   MSKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET    + A      +  
Sbjct: 61  PGVLRKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVET----MYADLAVRQADD 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FF 170
              G P    ++ P+     +  FD +  DR     V  L     F  +++ NPH I F 
Sbjct: 117 FAEGVPAFGVEISPVRFNKGSLPFDNLGHDRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G     ++P FS+G+N++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGININYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL--- 279
            AS +A       L    + +SV   GG +    H  +H   + + G A +    ++   
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPED 296

Query: 280 DIKTGKWI------KKNEDDEAY 296
            + +G+        ++  +  AY
Sbjct: 297 QLHSGQVKLEAVKTEETGEQAAY 319


>gi|225874899|ref|YP_002756358.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196]
 gi|225794515|gb|ACO34605.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196]
          Length = 265

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 101/280 (36%), Gaps = 26/280 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K +  GN  L+++ +       + AI           D +  +   +       IR
Sbjct: 1   MQFVKADACGNDFLIVEGKAD----AALAIALCQRHTGVGADGVEFLE--KTGPHSGTIR 54

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSISVDMGE 122
           ++N DGS  +  GNG RCV  ++      +     T  T  G    +          M  
Sbjct: 55  LVNADGSIAEISGNGTRCVAAWMAHESHARPGDTITLTTDAGARACRVVSADGAKFLMAT 114

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI---FFVEDDLYHYD 179
            +     +P  R           +  +         VV  GNPH +      +  +  +D
Sbjct: 115 GMG----VPTVRHG---------MVKLPQGITVEGSVVHTGNPHFVIEVQSGDFTVQGHD 161

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
               G  +  HP F    N+         ++ +R +ERGVG T + G+  CAS  A+   
Sbjct: 162 WREIGKAICFHPDFPAQTNVEFVHFIDTNTVAIRIYERGVGPTTSSGTGTCASAAATIAA 221

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278
            +    + V   GG   +EW      + +TG A+   +G+
Sbjct: 222 ARAASPLRVIAEGGEQRVEWAGQGAEITLTGPAELICQGE 261


>gi|325686132|gb|EGD28183.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 328

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 132/322 (40%), Gaps = 33/322 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L               D I+ + +   
Sbjct: 1   MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  + +   F  ET+         +    +
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTRESQFKVETM--YADLAVRQADDFA 118

Query: 118 VDMGEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVE 172
             +    ++   I   +    FD +  +R     V  L     F  +++ NPH I F  E
Sbjct: 119 EGVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKE 178

Query: 173 DDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
           +DL    L   G     ++P FS+GVN++   +     L +RT+ERGVG T ACG+   A
Sbjct: 179 EDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSA 238

Query: 232 SVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE---------- 274
           S +A       L    + +SV   GG +    H  +H   + + G A +           
Sbjct: 239 SSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPEDQL 298

Query: 275 WEGKLDIKTGKWIKKNEDDEAY 296
             G++ ++  K  K+  +  AY
Sbjct: 299 HSGQVKLEAVK-TKETGEQAAY 319


>gi|220915716|ref|YP_002491020.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953570|gb|ACL63954.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 266

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 113/284 (39%), Gaps = 22/284 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+   + F K  G+GN  +V+D         + A            D ++ +   + A  
Sbjct: 2   MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A + I N DGS    CGNG+RCV R L               G LV   +         
Sbjct: 59  TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGL--------DGDLVVDTDSGPKRCTIH 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P    + + +     +++ ++        L       VSMGNPHA+ F   +      
Sbjct: 111 RGPGGAVEAVSVEMGPARLEGEQEFRVGGEAL---RALRVSMGNPHAVLFDAPE----RA 163

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +     A   +   GVN+  AR      +DL  WERG GLT ACG+ ACA+ VA+    
Sbjct: 164 RALAVGPALERLVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRG 222

Query: 241 K--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281
                  V V++ GG L I    +   V M G A++ + G+ D+
Sbjct: 223 LARAGAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266


>gi|72161220|ref|YP_288877.1| diaminopimelate epimerase [Thermobifida fusca YX]
 gi|123760867|sp|Q47RR3|DAPF_THEFY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|71914952|gb|AAZ54854.1| diaminopimelate epimerase [Thermobifida fusca YX]
          Length = 274

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 113/294 (38%), Gaps = 36/294 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  +++       ++ +  + AL         D ++ +            
Sbjct: 1   MRFAKGHGTENDFVILPDPDGELDLDAATVAALCDRRAGLGADGVLRVVRTKALDEPLTG 60

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKE 110
                   + F+   N DGS  + CGNG+R   R+L       +  FE  T  G      
Sbjct: 61  EAATAQRCEWFMDYRNADGSVAEMCGNGVRVFARYLQEAGLVGAAAFEVGTRAGARHVVL 120

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             DG+I+VDMG   +      L     ++     H              +S+GNPH    
Sbjct: 121 EPDGNITVDMGPVRI------LGPGSARLADGPVH-----------GTRISVGNPHLACR 163

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           V   +   DL+     L +   F +G N+ + R  +   L++R +ERG   T +CG+   
Sbjct: 164 VARPVAEVDLS--APPLLRAEEFPQGANVEVFREVASGVLEMRVYERGAAETRSCGTGIV 221

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           A+  A+    + +   +V++ GG   +   ++    ++G A    EG + +   
Sbjct: 222 AAAAAATPPGE-DARWTVRVPGGECTV-VLESGAARLSGPAVIVAEGDVRLSAL 273


>gi|224373792|ref|YP_002608164.1| diaminopimelate epimerase [Nautilia profundicola AmH]
 gi|223589860|gb|ACM93596.1| diaminopimelate epimerase [Nautilia profundicola AmH]
          Length = 242

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 98/276 (35%), Gaps = 41/276 (14%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           +K    GN  ++       D  +  A       +    D +++I   +    D   +  N
Sbjct: 4   SKYSASGNDFVIFHAFLKKDR-SEIAKILCDRQNGVGADGLIVILPHEQ--YDFEWQFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
            DGSE + CGNG R    +   + +  K   F TI G++ A+                  
Sbjct: 61  ADGSEAEMCGNGSRAAAHYAYVNELAPKKMQFLTIAGVIEAEV----------------- 103

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
                    D    +           +    +   G PH +     D+  +++     L 
Sbjct: 104 ---------DGDIVESQLTEHKIIKEVGEWKLFDTGVPHLVKID--DINSFNIEEARKL- 151

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
                +    N+++A V     L +RT+ERGV   T ACG+  CAS + +         V
Sbjct: 152 ----RYEHNANVNVAEVKDGN-LYVRTYERGVEDETLACGTGMCASFLFAREQGLVGNEV 206

Query: 247 SVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +V    G  L I+   NN ++  G+ K  +    ++
Sbjct: 207 TVYPKSGEELHIKLK-NNRLYFKGKVKNTFITTFNV 241


>gi|117928690|ref|YP_873241.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B]
 gi|189082856|sp|A0LUZ5|DAPF_ACIC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|117649153|gb|ABK53255.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B]
          Length = 303

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 107/317 (33%), Gaps = 58/317 (18%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           V F K     N  +++        + +  + A+         D I+ +            
Sbjct: 4   VPFLKGHATRNDFVILPDHDDELELDAALVRAICDRRRGLGADGILRVVAVPADDAPVSS 63

Query: 53  ------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94
                                Q A+   F+   N DGS  + CGNG+R   R+L      
Sbjct: 64  AGATADAAAGRPPQPSAGRPPQPAAARWFMDYRNADGSVAEICGNGIRLFARYLVDAGLE 123

Query: 95  KSFTFETIR--GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152
           ++  F      G +       G ++  +  P                 R RF    +   
Sbjct: 124 EAGRFLVGTRIGPVPVDVPPAGDVTAWLPAP-----------ELRGGGRARFDGRMLE-- 170

Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212
                  VS+GNPH +  V+      D+      +     F +G N+ +  +     L +
Sbjct: 171 ----GVRVSVGNPHLVCVVD---TLADVDFTRAPVLDSDEFPDGANVEVVEIERPGVLRM 223

Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMT 268
           R +ERGVG T +CGS ACA    +    +  R       + + GG L I +  +  V + 
Sbjct: 224 RVYERGVGETWSCGSGACAVAAVAEGAERIPRPADGWWRIVVPGGELRIRFDGD-RVALA 282

Query: 269 GEAKKEWEGKLDIKTGK 285
           G A    EG+L +   +
Sbjct: 283 GPAVVVAEGRLHLAALE 299


>gi|296454515|ref|YP_003661658.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183946|gb|ADH00828.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 297

 Score =  125 bits (314), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      ++D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPSADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F          + F   T  G+ +   
Sbjct: 68  DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             +          +           +   + D + +             V MGNPH +  
Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGAEGSARGTFVDMGNPHVVAV 180

Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESL------DLRTWERGVGL 221
           +ED      +             P+     N+   RV  ++         +R  ERG G 
Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+  CA+ V             + + GG L ++  D++ V +TG A    +  L
Sbjct: 241 TLSCGTGLCATGVVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296


>gi|315637930|ref|ZP_07893116.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21]
 gi|315481965|gb|EFU72583.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21]
          Length = 249

 Score =  125 bits (314), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 92/273 (33%), Gaps = 32/273 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +  G   N +  A    +  +    D +++I   +    D    
Sbjct: 1   MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F            F +  G++ A   + G          
Sbjct: 58  FYNKDGSRAAMCGNGSRAAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSGV--------- 108

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + L  + D  +   F      +           G PH + F E      ++  F 
Sbjct: 109 ----EVVLGEARDVKEPFEFEGRVWQY--------CDTGVPHLVHFCE------NIEEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +        N++ A++   + + +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 KKTCQILRKKYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAYLQKKLK 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V +    G  L     +  ++  G+ K  +E
Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243


>gi|167860678|gb|ACA05121.1| diaminopimelate epimerase [Flammeovirga yaeyamensis]
          Length = 205

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 92/233 (39%), Gaps = 33/233 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62
           M+ F K +G GN  ++ID R    +I      A           D ++LI        D 
Sbjct: 1   MIHFWKYQGAGNDFIMIDDRDATFDINDHEKVAFLCHRRFGVGGDGLILIRL--KEGYDF 58

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121
            +   N DG     CGNG RC VRF  +     + T F    G   A  +    + + M 
Sbjct: 59  EMVYFNADGHVGTMCGNGGRCAVRFAHTLGLFDTTTSFWAADGAHEATLDEQQLVHLKMN 118

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
            P                                + + +  G+PH + F + DL ++D  
Sbjct: 119 PPG-------------------------EIEINADHYFMDTGSPHYVRFEK-DLDNFDCV 152

Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232
           + G  +  +  F  EG N++ A+VT  +SL +RT+ERGV   T ACG+   A 
Sbjct: 153 TEGKAIRYNERFAKEGTNVNFAQVTGSQSLSVRTYERGVEDETYACGTGVTAC 205


>gi|119964081|ref|YP_947364.1| diaminopimelate epimerase [Arthrobacter aurescens TC1]
 gi|119950940|gb|ABM09851.1| diaminopimelate epimerase [Arthrobacter aurescens TC1]
          Length = 322

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 102/310 (32%), Gaps = 51/310 (16%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------- 55
           + F+K  G GN  ++I   G    +T++ +  L         D ++              
Sbjct: 27  LTFSKGHGTGNDFVLIADPGDAHEVTAEQVAQLCDRHVGIGGDGLIRAVPSRFLPEGRVA 86

Query: 56  --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVA 108
             QD   + F+   N DGS  + CGNG+R  V FL +         ++ T  T  G+   
Sbjct: 87  LEQDPQAEWFMDYRNGDGSLSEMCGNGVRVFVHFLIAEGLVDLGPGQTLTIGTRGGVKKV 146

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               +G          L  +    +++ D +               R    VSMGNPH +
Sbjct: 147 VRTVNGYAVDMGPWEFLFPEE-ATSKAMDALVSAE------GLEVPRPGLSVSMGNPHTV 199

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +  +L               P  + G N+               ++ +R  ERGVG T
Sbjct: 200 VAL-AELSELSATQLFKAPVVDPKPANGTNVEFVVPAEPLVEDGVGTITMRVHERGVGET 258

Query: 223 AACGSAACASVVASGCLHKTNRAVSVK------------MLG-GGLLIEWHDNNHVFMTG 269
            +CG+ ACA+ VA                            G G          HV ++G
Sbjct: 259 QSCGTGACAAAVAIRHWAGDTAPNDWHVKVPGGVVGVKFFPGAG-------GREHVELSG 311

Query: 270 EAKKEWEGKL 279
            A     G L
Sbjct: 312 PAVIVATGTL 321


>gi|237785689|ref|YP_002906394.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758601|gb|ACR17851.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 326

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 102/317 (32%), Gaps = 50/317 (15%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52
           M      F+K  G  N  +++       ++    +  LS        D ++ I       
Sbjct: 1   MPEQTTPFSKGHGTENDFILLPDFDADIDLDPALVRVLSDRRAGLGADGVIRIARTEALI 60

Query: 53  --------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRK 95
                             + + + F+   N DGS  + CGNG R    +L +        
Sbjct: 61  DKGIIAREAVGESGDGAPENTPEWFMDYRNADGSIAEMCGNGSRVFGHYLFAHNLVSDSP 120

Query: 96  SFTFETIRGILVAKENRDGSISVDMGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFL 154
            F+  T  GI           +       +D   +  + +S    DR RF          
Sbjct: 121 KFSIGTRAGIKRLTVVNPAQTTDSSARIAVDMGQVGIIGQSVAAFDRQRF---------- 170

Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------ 205
                + +GNPH    V  DL    L      L        F  G N+ +          
Sbjct: 171 -AGVGIDVGNPHL-ACVIPDLDDAGLRELPLHLKPVLDEEFFPHGANVEVLTPLRADDSR 228

Query: 206 -SLESLDLRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNN 263
               ++ +R  ERG G T +CG+   A+ VA+     + +  V V + GG + +    + 
Sbjct: 229 DGDGTVSMRVHERGSGETRSCGTGTVAAAVAALADRGQVDGTVHVVVPGGEVTVTIK-DE 287

Query: 264 HVFMTGEAKKEWEGKLD 280
              + G +     G ++
Sbjct: 288 QATLEGPSVIVASGTIN 304


>gi|325002638|ref|ZP_08123750.1| diaminopimelate epimerase [Pseudonocardia sp. P1]
          Length = 290

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 99/298 (33%), Gaps = 43/298 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI-----------H 53
           ++F K  G  N  +V+       ++T + + AL         D ++ +            
Sbjct: 5   IEFTKGHGTRNDFVVLPDPDAALDLTPERVAALCDRHGGIGADGVLRVVRWAKLAGDESV 64

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENR 112
                 V+ F+   N DGS  + CGNG+R   R+L  R          T  G+  A    
Sbjct: 65  PEPVPGVEWFMDYRNADGSVAEMCGNGVRVFARYLHERGWAPGGGPVGTRAGVRTATL-S 123

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             ++SVDMG   +    +                         +   + +GNPH      
Sbjct: 124 GDTVSVDMGPVAIGPASVATTGGARF-----------------DGIALDVGNPHLACVTA 166

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT----SLESLDLRTWERGVGLTAACGSA 228
            D    DL     +     +F  GVN+              + +R  ERGVG T ACG+ 
Sbjct: 167 TDPDALDLTGAPAVD--PEVFPRGVNVEFVTPLDGPADGGRVRMRVHERGVGETLACGTG 224

Query: 229 A-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-----FMTGEAKKEWEGKLD 280
              A V A          V V   GG L +     +        + G A     G++D
Sbjct: 225 TVAAVVAALRAAGHPAGDVHVDTPGGRLRVTVGAGDDAATGTTVLHGPAVLLATGEID 282


>gi|227546822|ref|ZP_03976871.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|322691548|ref|YP_004221118.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|227212784|gb|EEI80665.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|320456404|dbj|BAJ67026.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 297

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F          + F   T  G+ +   
Sbjct: 68  DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             +          +           +   + D + +             V MGNPH +  
Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180

Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGL 221
           +ED      +             P+     N+   RV  ++         +R  ERG G 
Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+  CA+ +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296


>gi|227515203|ref|ZP_03945252.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931]
 gi|227086535|gb|EEI21847.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931]
          Length = 335

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 128/312 (41%), Gaps = 28/312 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N+  ++D       ++   + A                D +++++D  +
Sbjct: 1   MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +    +R+IN DGSE   CGNG+R V R+L  +  +  F  ET    + A         
Sbjct: 61  PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVET----MKADLTVAYHDD 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFF- 170
              G P    ++ P+     A  FD++  +R         +       +++ NPH I F 
Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++L    L   G     ++P F++GVN++ A +     L +RT+ERGVG T ACG+  
Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         ++V   GG +    H ++    + + G A   +  ++++ 
Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294

Query: 283 TGKWIKKNEDDE 294
                     D 
Sbjct: 295 EAALHDAQVTDA 306


>gi|184155328|ref|YP_001843668.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956]
 gi|260662159|ref|ZP_05863055.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN]
 gi|183226672|dbj|BAG27188.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956]
 gi|260553542|gb|EEX26434.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN]
          Length = 335

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 128/312 (41%), Gaps = 28/312 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N+  ++D       ++   + A                D +++++D  +
Sbjct: 1   MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            +    +R+IN DGSE   CGNG+R V R+L  +  +  F  ET    + A         
Sbjct: 61  PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVET----MKADLTVAYHDD 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFF- 170
              G P    ++ P+     A  FD++  +R         +       +++ NPH I F 
Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++L    L   G     ++P F++GVN++ A +     L +RT+ERGVG T ACG+  
Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNVNFAHILGPNELFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         ++V   GG +    H ++    + + G A   +  ++++ 
Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294

Query: 283 TGKWIKKNEDDE 294
                     D 
Sbjct: 295 EAALHDAQVTDA 306


>gi|42521693|ref|NP_967073.1| hypothetical protein Bd0045 [Bdellovibrio bacteriovorus HD100]
 gi|39574223|emb|CAE77727.1| dapF [Bdellovibrio bacteriovorus HD100]
          Length = 285

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 105/291 (36%), Gaps = 35/291 (12%)

Query: 9   AKMEGIGNKILVIDMR--------GCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDA 58
            KM G GN   +ID R             +T      L  D       D  +LI D    
Sbjct: 10  TKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDG-SE 68

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDGS 115
             D      N DGS  + CGN  RC  RF    ++ K      F+T  G++VA+   +  
Sbjct: 69  GFDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSR 128

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I V M E     +LI L                          +V+ G PH +  +    
Sbjct: 129 IRVKMPEARFIQELIELKTK---------------SSSTEKFALVNTGVPHLVQKIHAFS 173

Query: 176 YHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233
               L          H +   G N++     S   +   T+ERGV   T ACG+ A A+ 
Sbjct: 174 DTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAA 233

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE--WEGKLDI 281
                  K   +V V+M GG + + +   + H  M G+A     ++  L++
Sbjct: 234 FVHNKETK-ESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEV 283


>gi|268319543|ref|YP_003293199.1| hypothetical protein FI9785_1066 [Lactobacillus johnsonii FI9785]
 gi|262397918|emb|CAX66932.1| dapF [Lactobacillus johnsonii FI9785]
          Length = 333

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 31/320 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS----DAINALSTDD-NT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D       +T     +    ++          D ++ I+    
Sbjct: 1   MSTLYKVHGSQNHFFILDQTELSTPLTDTELVEFTKKITNPSSGILNGADGVLAINSPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
               A +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +++ +    
Sbjct: 61  PQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDNLAKE 120

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + +V++     +   +P          D++       L       +++ NPH I F++
Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGL---RFTSIAVPNPHLISFMD 177

Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + +    L   G      +P F +GVN++ A++     L +RT+ERGVG T ACG+   
Sbjct: 178 QNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMS 237

Query: 231 ASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL---D 280
           A+ +A           N+++ V   GG +    H  NH   + + G A    + ++   D
Sbjct: 238 ATSLAFCLTYPEKGIFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNATFTDQIEISEAD 297

Query: 281 IKTGKW----IKKNEDDEAY 296
           +    +    I   E++  Y
Sbjct: 298 LHNCDFSSINITSTEEESDY 317


>gi|295111748|emb|CBL28498.1| diaminopimelate epimerase [Synergistetes bacterium SGP1]
          Length = 284

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 113/286 (39%), Gaps = 32/286 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD---DNTHFDQIMLIHDFQDASVD 61
           M+D  KM G GN  LV+D      + ++ A  A +     ++   D ++ +   + A+  
Sbjct: 1   MIDCLKMNGNGNDFLVVDNLSLAMDASALARAARAVCRRRESVGADGLLALEPSERAA-- 58

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDM 120
             +R+ N DGSE + CGNG RC  RF   R    +  TFET  G + A            
Sbjct: 59  FRMRLFNRDGSEGEMCGNGARCAARFAFDRGIVGREMTFETRGGDVHAVVRG-------- 110

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDDLYH 177
                    + L  +                        + +G PHA+ F       +  
Sbjct: 111 -------NRVALDLAPVSTGSAVLKAHASVEGCDFTYAFLVVGVPHAVIFERERRRSIAE 163

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIA--RVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
           Y +     L ++  +F  G N++ A        +LD+ T+ERGV  +T +CG+ + AS +
Sbjct: 164 YAVLG-RALRSRQDLFPVGANVNFALLSSEDSGTLDVVTYERGVEDVTLSCGTGSAASAI 222

Query: 235 ASGCLHKTNRAVSVKMLGG--GLLIEWHDNNHV--FMTGEAKKEWE 276
           A   L      V V   GG   + + W + + V   + G A    E
Sbjct: 223 AGRLLGVVGDEVRVVNPGGVNDVSLTWIETDVVQPRLEGGALMIAE 268


>gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99]
 gi|166225737|sp|A0PT80|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99]
          Length = 290

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 34/304 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------L 51
           M+ FAK  G  N  +++       ++T+  + AL         D I+            +
Sbjct: 1   MI-FAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGV 59

Query: 52  IHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
           +H   D  +  D ++   N DGS  Q CGNG+R    +L +         ET    +V  
Sbjct: 60  LHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASG------LETRDEFVVGS 113

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
                 ++V   +       + + ++      +    G        +   V +GNPH   
Sbjct: 114 LAGPRPVTVHHADQTHADVTVDMGKANKLGPGEAVVGGRR-----LSGVAVDVGNPHLAC 168

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +           L     +   H  F EGVN+ +    +   + +R  ERGVG T +CG+
Sbjct: 169 LDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGVGETRSCGT 228

Query: 228 AA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
               A+V A     +    ++V++ GG + +   D   + + G +     G++   + +W
Sbjct: 229 GTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI---SEEW 284

Query: 287 IKKN 290
            +  
Sbjct: 285 WRDQ 288


>gi|300812862|ref|ZP_07093257.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496198|gb|EFK31325.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 328

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 35/323 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D     + +T + +  L               D I+ + +   
Sbjct: 1   MNKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
             V   +R+IN DGSE   CGNG+R V R+L  +     F  ET    + A      +  
Sbjct: 61  PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVET----MYADLAVRQADD 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FF 170
              G P    ++ P+     +  FD +  +R     V  L     F  +++ NPH I F 
Sbjct: 117 FAEGVPAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176

Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E+DL    L   G     ++P FS+GVN++   +     L +RT+ERGVG T ACG+  
Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL--- 279
            AS +A       L    + +SV   GG +    H  +H   + + G A +    ++   
Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPED 296

Query: 280 DIKTGKWI------KKNEDDEAY 296
            + +G+        K+  +  AY
Sbjct: 297 QLHSGQVKLEAVKTKETGEQAAY 319


>gi|213691664|ref|YP_002322250.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523125|gb|ACJ51872.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 297

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 94/298 (31%), Gaps = 36/298 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +   +           
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F          + F   T  G+ +   
Sbjct: 68  AVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             +                I +   +   + D + +             V MGNPH +  
Sbjct: 128 RSNTKPYGANVF------QIEM-GEWKVGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180

Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGL 221
           +ED      +             P+     N+         + T +    +R  ERG G 
Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVNERGCGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+  CA+ +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296


>gi|189438968|ref|YP_001954049.1| diaminopimelate epimerase [Bifidobacterium longum DJO10A]
 gi|239620800|ref|ZP_04663831.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|317481619|ref|ZP_07940655.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689587|ref|YP_004209321.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           157F]
 gi|189427403|gb|ACD97551.1| Diaminopimelate epimerase [Bifidobacterium longum DJO10A]
 gi|239516376|gb|EEQ56243.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516157|emb|CBK69773.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum F8]
 gi|316916979|gb|EFV38365.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320460923|dbj|BAJ71543.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 297

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F          + F   T  G+ +   
Sbjct: 68  DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             +          +           +   + D + +             V MGNPH +  
Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180

Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESL------DLRTWERGVGL 221
           +ED      +             P+     N+   RV  ++         +R  ERG G 
Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+  CA+ +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296


>gi|332670093|ref|YP_004453101.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484]
 gi|332339131|gb|AEE45714.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484]
          Length = 330

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 102/304 (33%), Gaps = 31/304 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----------Q 56
            K  G  N  +++D R    ++T   +  L+        D ++ +               
Sbjct: 23  TKGHGTQNDFVLLDDRDGLLDLTPALVRELADRRAGLGGDGVIRLVRSAHLPEGAALLAD 82

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                 F+   N DGS  + CGNG+R V  F        +   E + G   A   R   +
Sbjct: 83  VPDATWFMDYRNADGSVAEMCGNGVRVVAAFAERLGLWDASDGELVLG-TRAGVRRVRRV 141

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV------NHLFLRNPFVVSMGNPHAIFF 170
            V  G P   W  + + R +     D    G            +R    V +GNPH +  
Sbjct: 142 PVPDGLPDAVWYAVDMGRWYLPGGEDAVRDGFDAQVAVAGLADVRPALGVDVGNPHTVLA 201

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---------ESLDLRTWERGVGL 221
           +       D A         P+   G N+ +                 + +R  ERGVG 
Sbjct: 202 LPG-PEELDAADLTRAPEVRPVPPHGTNVELVVPLGETPGPDGALVGRVAMRVHERGVGE 260

Query: 222 TAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+ ACA+ +A              V + GG + +    + HV + G A       +
Sbjct: 261 TRSCGTGACAAALAVRTWAGAGAPDVWLVDVPGGTVRVTALSDGHVELAGPAVLVATATV 320

Query: 280 DIKT 283
           D+  
Sbjct: 321 DLAA 324


>gi|254674295|emb|CBA10079.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275]
          Length = 172

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62
           + + F KM G+GN  +VID            I A +       FDQ++++   +   VD 
Sbjct: 2   NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120
             RI N DGSEV  CGNG RC  RF+  +    +K    ET  G++  K + +G ++V+M
Sbjct: 62  RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           G+P      IP      + D D    G      ++    V+MGNP  
Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPPC 167


>gi|329667406|gb|AEB93354.1| Diaminopimelate epimerase [Lactobacillus johnsonii DPC 6026]
          Length = 333

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 26/302 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS----DAINALSTDD-NT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D       +T+    +    ++          D ++ I+    
Sbjct: 1   MSTLYKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
               A +R+IN DGSE   CGNG+R V R+L+ +  + +F  +T+   L  +++ +    
Sbjct: 61  PQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDNLAKG 120

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + +V++     +   +P          D++       L       +++ NPH I F++
Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGL---RFTSIAVPNPHLISFMD 177

Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + +    L   G      +P F +GVN++ A++     L +RT+ERGVG T ACG+   
Sbjct: 178 QNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMS 237

Query: 231 ASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIKT 283
           A+ +A           N++++V   GG +    H  NH   + + G A   +  +++I  
Sbjct: 238 ATSLAFCLTYPEKGFFNQSINVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISE 295

Query: 284 GK 285
             
Sbjct: 296 AD 297


>gi|308180983|ref|YP_003925111.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046474|gb|ADN99017.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 332

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 118/296 (39%), Gaps = 25/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++          +   D        D ++++
Sbjct: 1   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 58  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117

Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           D +  V      +         L    +       +              V++ N H I 
Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNQHLIA 177

Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           FV+ D L   +L   G  +      +F +GVN+S   V    S+ +RT+ERGVG T ACG
Sbjct: 178 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 237

Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274
           +A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 238 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293


>gi|254556996|ref|YP_003063413.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1]
 gi|254045923|gb|ACT62716.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1]
          Length = 332

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 25/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++          +   D        D ++++
Sbjct: 1   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 58  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117

Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           D +  V      +         L    +       +              V++ NPH I 
Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNPHLIA 177

Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           FV+ D L   +L   G  +      +F +GVN+S   V    S+ +RT+ERGVG T ACG
Sbjct: 178 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 237

Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274
           +A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 238 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293


>gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121]
 gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121]
          Length = 289

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 102/302 (33%), Gaps = 33/302 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           +DF+K  G  N  +V+       ++    ++AL         D I+ +            
Sbjct: 1   MDFSKGHGTQNDFVVLPDLDVRIDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                  A+ D F+   N DGS  + CGNG+R    +L +     +  F   +  G    
Sbjct: 61  GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +   +   D+   +   K +  + +                +F      V   +   +
Sbjct: 121 VVHGYDATHGDVTVAMGTIKDLGTSSA-----------TIDGRVFAGVGIDVGNPHLACV 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                      L    +       F  GVN+ I        + +R  ERGVG T +CG+ 
Sbjct: 170 DEHVTPEVLSSLDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCGTG 229

Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+  A+     +   +V V++LGG + +   +     + G +     G +   +  W 
Sbjct: 230 TVAAAAAALRYDGRDEGSVLVRVLGGEVQVTV-EGGKGSLRGPSVLVASGTI---SDAWW 285

Query: 288 KK 289
           + 
Sbjct: 286 QS 287


>gi|300768834|ref|ZP_07078728.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300493567|gb|EFK28741.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 334

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 25/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++          +   D        D ++++
Sbjct: 3   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 59

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 60  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 119

Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           D +  V      +         L    +       +              V++ NPH I 
Sbjct: 120 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNPHLIA 179

Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           FV+ D L   +L   G  +      +F +GVN+S   V    S+ +RT+ERGVG T ACG
Sbjct: 180 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 239

Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274
           +A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 240 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 295


>gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M]
 gi|229813234|sp|B2HL16|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M]
          Length = 290

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 34/304 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------L 51
           M+ FAK  G  N  +++       ++T+  + AL         D I+            +
Sbjct: 1   MI-FAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGV 59

Query: 52  IHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
           +H   D  +  D ++   N DGS  Q CGNG+R    +L +         ET    +V  
Sbjct: 60  LHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASG------LETRDEFVVGS 113

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
                 ++V   +       + + ++      +    G        +   V +GNPH   
Sbjct: 114 LAGPRPVTVHHADQTHADVTVDMGKANKLGPGEAVVGGRR-----LSGVAVDVGNPHLAC 168

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +           L     +   H  F EGVN+ +    +   + +R  ERGVG T +CG+
Sbjct: 169 LDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGVGETRSCGT 228

Query: 228 AA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
               A+V A     +    ++V++ GG + +   D   + + G +     G++   + +W
Sbjct: 229 GTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI---SEEW 284

Query: 287 IKKN 290
            +  
Sbjct: 285 WRDQ 288


>gi|28378791|ref|NP_785683.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1]
 gi|32171430|sp|Q88V90|DAPF_LACPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|28271628|emb|CAD64534.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1]
          Length = 332

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 25/296 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52
           M   M+   K+ G GN   ++D       ++          +   D        D ++++
Sbjct: 1   MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57

Query: 53  HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112
              +   V   +R+IN DG+E   CGNG+R V R+L ++  ++ F  +T+   L  +   
Sbjct: 58  DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117

Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           D +  V      +         L    +       +              V++ NPH I 
Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNPHLIA 177

Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           FV+ D L   +L   G  +      +F +GVN+S   V    S+ +RT+ERGVG T ACG
Sbjct: 178 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 237

Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274
           +A  AS +    LH+     N+ + V   GG +    H   +   +M   G A   
Sbjct: 238 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293


>gi|312132408|ref|YP_003999747.1| dapf [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772769|gb|ADQ02257.1| DapF [Bifidobacterium longum subsp. longum BBMN68]
          Length = 297

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56
            K    GN  +V   +      T+D +  L         D ++ +               
Sbjct: 8   TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                    F+   N DGS  + CGNG R +  F          + F   T  G+ +   
Sbjct: 68  DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
             +          +           +   + D + +             V MGNPH +  
Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180

Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGL 221
           +ED      +             P+     N+   RV  ++         +R  ERG G 
Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGE 240

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           T +CG+  CA+ +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 241 TLSCGTGLCATGIVLQAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296


>gi|229817187|ref|ZP_04447469.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM
           20098]
 gi|229784976|gb|EEP21090.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM
           20098]
          Length = 304

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 97/295 (32%), Gaps = 31/295 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57
            K    GN  +V          T+D +  L         D ++ +   +D          
Sbjct: 16  TKTHATGNDFVVYADPEGRFEPTADEVRHLDDRHFGIGGDGVIRLAHPEDVSDLTAEQIA 75

Query: 58  ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  + F+   N DGS  Q CGNG R +  F   R   K   F       V      
Sbjct: 76  ECREDGAEWFMDYRNADGSLAQMCGNGTRAITLFAYDRGYAKGDAFHLGTRAGVKVLTSL 135

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI---FF 170
           GS+                  ++ + + D F +             V MGNPH +     
Sbjct: 136 GSVEGLGRNVFRV-----DMGAWKRGEVDAFEVTIPGTAGSARGTYVDMGNPHVVAVIED 190

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTWERGVGLTAA 224
            +  L   +           P+     N+   R        +L +  +R  ERG G T +
Sbjct: 191 GKATLPAVEDLDLVTKPVVSPVLESDQNVEFVRIDTRDADHNLGTATMRVNERGCGETLS 250

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+  CA+ V        +   ++ + GG L I+  D + V +TG+A    +  L
Sbjct: 251 CGTGLCATAVTLRAKTGID-HWTIAVRGGVLRIDVSDTD-VKLTGDATLVGDITL 303


>gi|209514903|ref|ZP_03263772.1| Diaminopimelate epimerase [Burkholderia sp. H160]
 gi|209504529|gb|EEA04516.1| Diaminopimelate epimerase [Burkholderia sp. H160]
          Length = 186

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 87  FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
            L   + + +    T RG+L    + D ++SVDMG+P+L+W+ IPL    D         
Sbjct: 1   MLMREINKPTVVLRTNRGLLTCTRDADQNVSVDMGKPLLNWQDIPLTGEMDTTAL----- 55

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
                    NP   SMGNPH  FFVE DL   D+A+ G ++  +P+F    N+   +V  
Sbjct: 56  -----PISGNPTACSMGNPHCTFFVE-DLASVDVAAIGPMIEANPLFRNRTNVHFVQVID 109

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266
              + LR WERG G+    GS  C +VV        +  V V+  GG + ++W     VF
Sbjct: 110 RGRIRLRIWERGGGIPLGSGSCCCGAVVGGIRRGLLDDTVEVQCDGGAVKVQWDGIGGVF 169

Query: 267 MTGEAKKEWEGKLDIK 282
           +TG  K  + GK+ I+
Sbjct: 170 LTGSVKTVFSGKIAIQ 185


>gi|57505555|ref|ZP_00371482.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195]
 gi|57016102|gb|EAL52889.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195]
          Length = 249

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 32/273 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +  G   N +  A    +  +    D +++I   +    D    
Sbjct: 1   MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F            F +  G++ A   + G          
Sbjct: 58  FYNKDGSRAAMCGNGSRVAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSG---------- 107

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + +     +  ++ F  G     +         G PH + F E      ++  F 
Sbjct: 108 -----VEVVLGEARDVKEPFEFGGRVWQY------CDTGVPHLVHFCE------NIEEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
               +        N++ A++   + + +RT+ERGV   T ACG+   A    +    K  
Sbjct: 151 KKTCQVLRKKYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAFLQKKLK 210

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             V +    G  L     +  ++  G+ K  +E
Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243


>gi|152993982|ref|YP_001359703.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1]
 gi|151425843|dbj|BAF73346.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1]
          Length = 248

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 92/270 (34%), Gaps = 34/270 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            K    GN  ++  +   H + +  A       +    D ++++   +    D      N
Sbjct: 4   TKYSANGNDFVIF-IAQEHADRSELAKKLCHRQNGVGADGMVVVLPHKK--YDFEWEFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEPILDW 127
            DGSE   CGN  R V  F   +   K    E + G  V +   +G  +  DM EP +  
Sbjct: 61  SDGSEADMCGNASRAVAHFAHEKGISKDGKAEFLTGAGVIRATINGLYVVSDMVEPDIQR 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             I                           +++  G PH +   E ++  +DL     L 
Sbjct: 121 DDI--------------------DENGERWWLIDSGVPHLVAIQE-NIDSFDLTEARRLR 159

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            K+                 ++L +RT+ERGV   T ACG+   A  +      K    V
Sbjct: 160 EKYNANVNIC------RLDGDTLYVRTYERGVEDETLACGTGMVACYIRLHKEGKVPDQV 213

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEW 275
            V    G  L + + +N      G+  K +
Sbjct: 214 KVHPKSGDELYVSY-ENGVYRFGGKVTKTF 242


>gi|227889924|ref|ZP_04007729.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849368|gb|EEJ59454.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200]
          Length = 333

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/302 (22%), Positives = 128/302 (42%), Gaps = 26/302 (8%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITS----DAINALSTDD-NT--HFDQIMLIHDFQD 57
           M    K+ G  N   ++D       +T+    +    ++          D ++ I+    
Sbjct: 1   MSTLYKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
               A +R+IN DGSE   CGNG+R V R+L  +  + +F  +T+   L  +++ +    
Sbjct: 61  PQALAQMRVINADGSEASMCGNGLRTVARYLFEKYNQDNFLVDTMNANLRVRKHDNLAKG 120

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + +V++     +   +P          D++       L       +++ NPH I F++
Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGL---RFTSIAVPNPHLISFMD 177

Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + +    L   G      +P F +GVN++ A++     L +RT+ERGVG T ACG+   
Sbjct: 178 QNQIKSNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMS 237

Query: 231 ASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIKT 283
           A+ +A           N+++ V   GG +    H  NH   + + G A   +  +++I  
Sbjct: 238 ATSLAFCLTYPEKGFFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISE 295

Query: 284 GK 285
             
Sbjct: 296 AD 297


>gi|227522831|ref|ZP_03952880.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290]
 gi|227090032|gb|EEI25344.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290]
          Length = 329

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 28/301 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N+  ++D       +  + + AL               D +++I     
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L           
Sbjct: 61  DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETS---- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +  G P    ++ P+  + + +  D                       +++ NPH I FV
Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++ + D+       L   +P F++GVN+S A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         +SV   GG +    HD++   H+ + G A   +  K++I 
Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294

Query: 283 T 283
            
Sbjct: 295 E 295


>gi|268678714|ref|YP_003303145.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616745|gb|ACZ11110.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946]
          Length = 247

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 104/277 (37%), Gaps = 33/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  AK    GN  ++       D  +  A            D ++++        D   +
Sbjct: 1   MQIAKYNASGNDFVIFHTFHETDR-SQLAQVLCHRQKGVGADGLIVLLPH--GEYDFKWQ 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGSE   CGNG R    +  ++    K   F T  G ++A E  +  +  ++  P 
Sbjct: 58  FYNSDGSEASMCGNGTRACAHYAYTQGLAPKKMCFLTGAG-VIASEVIECVVETELTTPK 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +      L+ SF++                        G PH + FVED      +A F 
Sbjct: 117 V------LSESFEENGL--------------TWHFCDTGVPHLVTFVED------VALFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +A+   +    N++ A +    +L +RT+ERGV   T ACG+   A   ++    +  
Sbjct: 151 KTIARQMRYKYNANVNYA-MLKENTLHVRTYERGVEDETLACGTGMAACFYSAYRQKRVG 209

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            +  V    G  L    ++  +F  GE +K +E   +
Sbjct: 210 ESAKVYPTSGEELFMRIEDQTLFFKGEVQKVFETVWE 246


>gi|330902408|gb|EGH33455.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 141

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63
           ++ F KM G+GN  +V+D+   H + +   A           FDQ++L+    +  VD  
Sbjct: 2   LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121
            RI N DGSEV+ CGNG RC  RF+  +    +K    ET  GI+      DG ISVDMG
Sbjct: 62  YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121

Query: 122 EPILDWKLIPLARS 135
            P      IP   +
Sbjct: 122 PPRFVPDEIPFEAA 135


>gi|253580132|ref|ZP_04857399.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848651|gb|EES76614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 151

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
            +  +     +  +     VSMGNPHAI +++ D+ H D+   G     H  F + VN  
Sbjct: 5   EEVINEPLDVNGKIYYITAVSMGNPHAIVYMD-DIDHLDIEKIGPAFENHVAFPDRVNTE 63

Query: 201 IARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIE 258
              V    ++ +R WERG G T ACG+ ACA  VAS        +  V+VK+LGG L I 
Sbjct: 64  FVEVIDEHTVKMRVWERGSGETLACGTGACAVAVASVLNGHVDGDSPVTVKLLGGDLQIF 123

Query: 259 WHDNNH-VFMTGEAKKEWEGKLDIK 282
           W+   + V+MTG A   ++G++D+ 
Sbjct: 124 WNRQENLVYMTGPAATVFDGEIDVS 148


>gi|296271766|ref|YP_003654397.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299]
 gi|296095941|gb|ADG91891.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299]
          Length = 245

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 33/276 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + K    GN  ++        + + DAIN  +  +    D +++I    + + D    
Sbjct: 1   MTYTKYSASGNDFVIF-HTLIKKDYSQDAINLCNRTEGIGADGLIVIVP--NQTADFEWL 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGNG R V  +  +     S          +        +   M +P +
Sbjct: 58  FYNSDGSDAAMCGNGTRAVAHYAYNNGLAPSNMKFLTEAGFITSSVDGNIVETQMTKPKI 117

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                 +   F++                   +++  G PH I  V+D      L  + +
Sbjct: 118 ------IKEEFEQEGL--------------TWYLIDTGVPHLITIVDD------LEKYNH 151

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
            L     +    N++ A++     + +RT+ERGV   T ACG+   A  + +  L   + 
Sbjct: 152 DLCAKMRYEHNANVNFAKIED-GKIFVRTYERGVEGETLACGTGMVACFLRANALGLVDT 210

Query: 245 AVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279
              V       L +    +  +F  G  KK +  ++
Sbjct: 211 KAFVYPKSKEELTVSIR-DGELFFKGAVKKVFVAQI 245


>gi|163791310|ref|ZP_02185724.1| diaminopimelate epimerase [Carnobacterium sp. AT7]
 gi|159873451|gb|EDP67541.1| diaminopimelate epimerase [Carnobacterium sp. AT7]
          Length = 326

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 116/284 (40%), Gaps = 16/284 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTH----FDQIMLIHDFQDA 58
           ++  K+ G  N+  ++D       +T   +     + TD         D ++L+ + +  
Sbjct: 3   LELIKVHGSENEFFILDETVLERTLTEAELVSLTKIITDRGNGLLNGADGVLLVGNAKHK 62

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           +    +R+IN DGSE   CGNG+R V R+L+ +  +     ET+   L  K+  +    V
Sbjct: 63  TTGESMRVINYDGSEASMCGNGLRTVARYLSEKHNQDELLIETMHADLHVKKAEELGKDV 122

Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
              +  +      +A+  F+  D               +   V++ NPH I FV+     
Sbjct: 123 QTFQVEISPVSFNVAKLPFNWKDETFIDQELPELAPGLHFSTVAVPNPHLISFVDHKTIK 182

Query: 178 YDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233
             L           +P F +GVN+S       + + +RT+ERGVG T ACG+A  AS   
Sbjct: 183 SSLLKELATYLNGANPYFPDGVNVSFVEELGNQKIFVRTFERGVGFTNACGTAMAASSLM 242

Query: 234 VASGCLHKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273
                  +    + V   GG +   +   +N + +M   G A  
Sbjct: 243 YVLLKDGRLEEKIQVTNPGGMVQTIVHQKENGNYWMDLIGNATF 286


>gi|121611462|ref|YP_999269.1| diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2]
 gi|121556102|gb|ABM60251.1| Diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2]
          Length = 382

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
           +     +                   +VSMGNPHA+  V+ D+    +   G L+A H  
Sbjct: 229 SADRQMIGDATPETPAHGTTATVWLVIVSMGNPHAVQLVD-DVERAPVPEIGPLIANHAR 287

Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG 252
           F++ VN    +V     + LR +ERG G T ACGS ACA+V A   L   +  V V M G
Sbjct: 288 FAQRVNAGFMQVVDRGHVRLRVFERGAGETLACGSGACAAVSAGIRLGLLDSEVQVAMRG 347

Query: 253 GGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKTG 284
           G + + W     + V MTG A   +EG++++ + 
Sbjct: 348 GLVSVAWSGAATDSVVMTGPATTVFEGQIELPSC 381



 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
           + F KM+G GN  +V+D       +++     L+        DQI+ +     A +D   
Sbjct: 37  IRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQILGVRPAPAADIDFEY 96

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
            I N DGSEV  CGNG RC+ RF+  +    ++    +T  G++  + N DG +SVDMG 
Sbjct: 97  IIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGR 156

Query: 123 PILDWKLIPLARS 135
              +   +P   S
Sbjct: 157 AQFEPASLPFDAS 169


>gi|116670025|ref|YP_830958.1| diaminopimelate epimerase [Arthrobacter sp. FB24]
 gi|116610134|gb|ABK02858.1| diaminopimelate epimerase [Arthrobacter sp. FB24]
          Length = 314

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 101/308 (32%), Gaps = 47/308 (15%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-------- 56
           + F+K  G GN  +++        I  + +  L         D ++     +        
Sbjct: 19  LAFSKGHGTGNDFVLVADPEATWPIAPEQVAELCDRHRGIGGDGLIRAVPSRYLPEGREL 78

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVA 108
                  + F+   N DGS  + CGNG+R  V FL ++   +       T  T  G    
Sbjct: 79  QAVHPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLVAQGLVRLDVGDALTIGTRAGAKTV 138

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               DG            W+ I    +  +          +     R    VSMGNPH +
Sbjct: 139 VRTDDGYAVDMGP-----WEFIFPGEATARAMDSLVTADGLEVP--RPALSVSMGNPHTV 191

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +  +L   +           P  + G N+     +         ++ +R  ERGVG T
Sbjct: 192 VAL-AELSELEATQLFKAPHVDPKPANGTNVEFVVPSEPLVHDGVGTITMRVHERGVGET 250

Query: 223 AACGSAACASVVASGCLHKTNRA-----------VSVKMLGGGLLIEWHDNNHVFMTGEA 271
            +CG+ ACA+ VA                     V VK   G        + HV ++G A
Sbjct: 251 QSCGTGACAAAVAIRHWAGQGAPDAWNVKVPGGVVGVKFFAGP-----EGHEHVELSGPA 305

Query: 272 KKEWEGKL 279
                G L
Sbjct: 306 VIVASGTL 313


>gi|226326691|ref|ZP_03802209.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198]
 gi|225204912|gb|EEG87266.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198]
          Length = 120

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MGNPH +  VE D+   ++   G +L +H  F E  N+   ++    +L LR +ERG G 
Sbjct: 1   MGNPHCVIQVE-DIKTAEVELLGPVLEQHERFPERANIGFMQIVDRNNLHLRVFERGAGE 59

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
           T ACGS ACA+V         ++ V V + GG LLIEW  + N ++MTG A   ++G + 
Sbjct: 60  TNACGSGACAAVAIGISQGLLDKRVKVTLPGGVLLIEWKGEGNSLYMTGPATHIYDGIIQ 119

Query: 281 I 281
           +
Sbjct: 120 L 120


>gi|227509661|ref|ZP_03939710.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190877|gb|EEI70944.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 329

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 28/301 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N+  ++D       +  + + AL               D +++I     
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L           
Sbjct: 61  DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETS---- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +  G P    ++ P+  + + +  D                       +++ NPH I FV
Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176

Query: 172 EDDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++     L   G      +P F++GVN+S A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SEEVMNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A    H         +SV   GG +    HD++   H+ + G A   +  K++I 
Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294

Query: 283 T 283
            
Sbjct: 295 E 295


>gi|227512606|ref|ZP_03942655.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577]
 gi|227084071|gb|EEI19383.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577]
          Length = 329

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 28/301 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N+  ++D       +  + + AL               D +++I     
Sbjct: 1   MVQLLKVHGSQNQFFILDQTELKTKLNQEELLALTKQITDPAKGLLDGADGVLVIDHSDH 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
                 +++IN DGS    CGNG+R V R+L+ +  + SF  ET+   L           
Sbjct: 61  DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETS---- 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
           +  G P    ++ P+  + + +  D                       +++ NPH I FV
Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176

Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +++ + D+       L   +P F++GVN+S A++     L +RT+ERGVG T ACG+  
Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236

Query: 230 CASVVASGCL----HKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282
            A+ +A              +SV   GG +    HD++   H+ + G A   +  K++I 
Sbjct: 237 SATSLAFCLNPPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294

Query: 283 T 283
            
Sbjct: 295 E 295


>gi|300781007|ref|ZP_07090861.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030]
 gi|300532714|gb|EFK53775.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030]
          Length = 314

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 98/293 (33%), Gaps = 21/293 (7%)

Query: 8   FAKMEGIGNKILVI----DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----- 57
           F K  G  N  +V+    D       +  D + +L         D  + I          
Sbjct: 22  FIKAHGTENDFVVLIDVDDQLEQLGILDDDLVASLCDRRAGVGGDGFLRIVSSDAHDAQG 81

Query: 58  -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                 F+   N DGS  + CGNG+R     L ++   ++  F+      V         
Sbjct: 82  ANGNRWFMDYRNADGSIAEMCGNGIRVFAHVLVAQGLEQARQFDVDTRAGVKHITIHSLT 141

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
             D          + +             +G      L     V   +  A+      + 
Sbjct: 142 GEDPNGSTHAVVEVGMG-PVGVTGVSTGRMGDFEFAGL--GVDVGNPHLAAVIPGLTPVQ 198

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARV----TSLESLDLRTWERGVGLTAACGSAACAS 232
             +LA F      H  F EGVN+ I            + +R WERGVG T +CG+   A+
Sbjct: 199 LAELA-FEQPAFDHEFFPEGVNVEIVTDPETADGDMRVGMRVWERGVGETRSCGTGTVAA 257

Query: 233 VVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             A+          ++V + GG L I  + +    MTG +     G++ +K+ 
Sbjct: 258 ARAALADAGVENGTITVDVPGGTLTIAIN-DGEATMTGPSVIVARGEVSLKSL 309


>gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1]
 gi|166225738|sp|A1T7U8|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1]
          Length = 289

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 106/305 (34%), Gaps = 37/305 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           + FAK  G  N  +++        +T  A+ AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVLLPDLTADLALTPAAVAALCDRRQGLGADGVLRVTTAGAARAAGVF 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                     D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G    
Sbjct: 61  DRLPEGVVEGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
             N    +  D+   +     + +  +                    N   V +GNPH  
Sbjct: 121 VLNALAGVGADVTVEMGKANQLGVGAA-------------TVGGRQFNGLAVDVGNPHLA 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +           L     ++     F +GVN+ +       ++ +R  ERGVG T +CG
Sbjct: 168 CVDAAMSSRELAALDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGETRSCG 227

Query: 227 SAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           +    A+V A         +++V++ GG +++   D N  ++ G +     G L     +
Sbjct: 228 TGTVAAAVAALAHQGSQTGSLTVRIPGGEVVVTITDANS-YLRGPSVLVAHGDL---ADE 283

Query: 286 WIKKN 290
           W    
Sbjct: 284 WWAAQ 288


>gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS]
 gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS]
 gi|166225734|sp|A3PYF9|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225735|sp|A1UEZ9|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS]
 gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS]
          Length = 293

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 30/304 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +++        +T   ++AL         D ++ +            
Sbjct: 1   MQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                   + D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 61  ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +          E  ++   + L  S   +   R         F      V   +   +
Sbjct: 121 VLHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGR--------RFTGLGIDVGNPHLACV 172

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                +     L     +      F +GVN+ +       ++ +R  ERGVG T +CG+ 
Sbjct: 173 DTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGETRSCGTG 232

Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+ VA+          + V++ GG +      +   F+ G ++    G+L    G+W 
Sbjct: 233 TVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATGEL---AGEWW 288

Query: 288 KKNE 291
           + ++
Sbjct: 289 QSHQ 292


>gi|229094038|ref|ZP_04225123.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
 gi|228689349|gb|EEL43167.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
          Length = 164

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 123 PILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
           P L    IP+    +    R+ F      + F      VSMGNPHA+ FV+ D+    L 
Sbjct: 4   PRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLT 58

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
           + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VVAS    K
Sbjct: 59  TLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGK 118

Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             R   ++V + GG L+I W +  +V M G A+    G  +
Sbjct: 119 MERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 159


>gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula]
          Length = 221

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           +S  + FAK  G+GN  ++ID R   +    +  A+     +     D ++ +    D  
Sbjct: 73  ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNFGVGADGVIFVLPGID-G 131

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSI 116
            D  +RI N DGSE + CGNG+RC  +F++       R SFT  T  G +V +   DG++
Sbjct: 132 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIHTGAGKIVPEVLGDGNV 191

Query: 117 SVDMGEPILDWKLIPLARSFDKM 139
            VDMGEP+L    +P   S +K+
Sbjct: 192 RVDMGEPVLKASDVPTKLSPNKI 214


>gi|25028393|ref|NP_738447.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
 gi|23493678|dbj|BAC18647.1| putative diaminopimelate epimerase [Corynebacterium efficiens
           YS-314]
          Length = 313

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 102/300 (34%), Gaps = 29/300 (9%)

Query: 1   MQSSMVD------FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH 53
           ++S ++       FAK     N  ++I       ++T+D +  L         D ++ + 
Sbjct: 24  LRSRLIRVKKEIAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVV 83

Query: 54  DF-----QDASVD---AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103
                  Q   VD    F+   N DGS  + CGNG+R    +      +    FT  T  
Sbjct: 84  RAGELGVQTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRA 143

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           G               +    +    +    S   +    F    V+        VV   
Sbjct: 144 GARSVTVLSADR-DDAVVRVDMGPAAV-TGISTCMIADQPFAGMGVDLGNPHLACVVPGL 201

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGVGLT 222
            P A       L +  L +     A  P      +   +A      ++ +R WERGVG T
Sbjct: 202 TPAA-------LKNIALEAPVFDTAFFPRGVNVELVTELADGLDDPAIHMRVWERGVGET 254

Query: 223 AACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +CG+    A+  A     +    V+V + GG + +   +     +TG ++    G + I
Sbjct: 255 RSCGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 313


>gi|317009457|gb|ADU80037.1| diaminopimelate epimerase [Helicobacter pylori India7]
          Length = 273

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 101/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FVE       L S   L 
Sbjct: 120 DVIP------ALRCEKFFSSDSVLEHIPTFYLIDTGVPHLVGFVE---NKEWLNSLNALE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 TLIPKSNESLELSLK-NDEIFYKGAVRYI 258


>gi|270284154|ref|ZP_05965634.2| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093]
 gi|270277202|gb|EFA23056.1| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093]
          Length = 298

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 90/300 (30%), Gaps = 39/300 (13%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ------ 56
           +M+   K  G GN  L+        N T   +  L         D ++ +   Q      
Sbjct: 6   TMI---KAHGTGNDFLIYCDADGSVNPTPREVRELCDRHFGLGADGLIRVTKPQFVDQVS 62

Query: 57  --------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI 105
                      V  F+   N DGS  + CGNG R    F          + F   T  G+
Sbjct: 63  TEVADECGAKGVQWFMDYRNADGSLAEMCGNGTRATALFAQHEGLADADQPFMLGTRAGV 122

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
            +                +           +   +   + +             V MGNP
Sbjct: 123 KMLSSLGAQPGLGQHVFRVDM-------GGWSMGELYAYTVSIPGQPGQAPGTFVDMGNP 175

Query: 166 HAIFFVEDDLYHYDL---ASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWE 216
           H +  +ED      +       +     P    G N+                  +R +E
Sbjct: 176 HVVAVIEDAQSTLPVIDDLDLTHAPKVEPQLDHGQNVEFVRIDDMDERADQGEATMRVYE 235

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           RG G T +CG+  CA+ +             + + GG L +   DN+ V +TG A+    
Sbjct: 236 RGCGETLSCGTGLCATAITLRARTGI-NHWRITVAGGILDVAVTDND-VQLTGNAELVAT 293


>gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4]
 gi|259595060|sp|C0ZYN8|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4]
          Length = 292

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 103/304 (33%), Gaps = 33/304 (10%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52
           + +DF+K  G  N  +V+       ++    ++AL         D I+ +          
Sbjct: 2   ATMDFSKGHGTQNDFVVLPDLDVRVDLEPARVSALCDRQRGLGADGILRVARAGALADAG 61

Query: 53  ----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL 106
                    A+ D F+   N DGS  + CGNG+R    +L +     +  F   +  G  
Sbjct: 62  VLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGAR 121

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
               +   +   D+   +   K +  + +                +F      V   +  
Sbjct: 122 PVVVHGYDATHGDVTVAMGPIKDLGTSSA-----------TIDGRVFAGVGIDVGNPHLA 170

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +           L    +       F  GVN+ I        + +R  ERGVG T +CG
Sbjct: 171 CVDEHVTAEVLSALDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCG 230

Query: 227 SAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           +   A+  A+     +   +V V++LGG + +   +     + G +     G +   +  
Sbjct: 231 TGTVAAAAAALKFDGRDEGSVLVRVLGGEVQVTV-EGGEGSLRGPSVLVANGTI---SDA 286

Query: 286 WIKK 289
           W + 
Sbjct: 287 WWQS 290


>gi|332673638|gb|AEE70455.1| diaminopimelate epimerase [Helicobacter pylori 83]
          Length = 278

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 103/274 (37%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAAHIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           ++       L +    N+ +F  G  +    G L
Sbjct: 231 ALIPKSNESLELSVK-NDEIFYKGTVRYIGMGVL 263


>gi|194468400|ref|ZP_03074386.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23]
 gi|194453253|gb|EDX42151.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23]
          Length = 333

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 20/307 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T++ +           +      D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTHPLTNEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D +  
Sbjct: 61  PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPG 120

Query: 118 VDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED-D 174
           V      +   K    A  FD +  +R     V  L+    F  +++ NPH I FV   +
Sbjct: 121 VPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPSLRFSALAVPNPHLISFVSMEE 180

Query: 175 LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           L    L   G    + +P FS+GVN++   +     L ++T+ERGVG T ACG+   A+ 
Sbjct: 181 LNGSALEELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS 240

Query: 234 VASGCLHK----TNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIKTGKW 286
           +A    H      N  +SV   GG +  I   D+ +  + + G A   +   + ++    
Sbjct: 241 LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVEESTI 298

Query: 287 IKKNEDD 293
            ++N D+
Sbjct: 299 HQENLDE 305


>gi|260907229|ref|ZP_05915551.1| diaminopimelate epimerase [Brevibacterium linens BL2]
          Length = 329

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 45/315 (14%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------- 57
           F K  G  N  +++        +  + I  L+        D ++ I              
Sbjct: 16  FIKGHGTQNDFVLLADDDSALEMHPETIAQLADRRSGLGSDGVIRIVRSASSGIPGAQEQ 75

Query: 58  --ASVDAFIRIINCDGSEVQSCGNGMRCVVR----FLTSRMKRKSFTFETIRGILVAKEN 111
             A  + F+   N DGS  + CGNG+R                +     T  GI   +  
Sbjct: 76  AEAGAEWFMDYYNHDGSLSEMCGNGVRVFAHVLATTGRVAADSREILVGTRDGIKTVRTV 135

Query: 112 RDGSISVDMGEPI------------LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159
            + ++    G+                W +I +   +   D +   +        R    
Sbjct: 136 LNPALGKQTGDATASVEQTLPGSAADSWYMIDM-GEWSLDDSEDVIVSTSGIEVPRPGMR 194

Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--------SLESLD 211
           V  GNPH +  + +       A   +     P+  +G N+    +            +L 
Sbjct: 195 VETGNPHTVVALAESAELES-AELRDAPVLDPVPPQGSNVEYIVMEPARSDVAGGEGALR 253

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-----NH 264
           +R +ERGVG T +CG+ ACA+ +A+      N      V + GG L I    N       
Sbjct: 254 MRVFERGVGETRSCGTGACAAAIAAHHWAGPNSPLQWRVDVPGGQLRIGITPNEDGTRGS 313

Query: 265 VFMTGEAKKEWEGKL 279
           V ++G A    +G +
Sbjct: 314 VTLSGPAVLVADGTI 328


>gi|227890858|ref|ZP_04008663.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741]
 gi|227867267|gb|EEJ74688.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741]
          Length = 330

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 30/316 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIH 53
           M+ S ++  K+ G GN   ++D          + +   A      D       D ++ + 
Sbjct: 1   MEESRMEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ 60

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
                  D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T    + A     
Sbjct: 61  -AGHEGTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQT----MHADLEVK 115

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-----NPFVVSMGNPHAI 168
            +  +    P  D ++ P++     +         ++              V++ NPH I
Sbjct: 116 KADKLAEKVPAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLI 175

Query: 169 FFVEDDL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            FV+ +          +       +P+F +GVN+S   +     + +RT+ERGVG T AC
Sbjct: 176 AFVDHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNAC 235

Query: 226 GSAACASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEG 277
           G+A  AS +    LH       + ++V   GG +   +   +N   +M+  G A +  + 
Sbjct: 236 GTAMSASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAK- 294

Query: 278 KLDIKTGKWIKKNEDD 293
            ++I     I  N D+
Sbjct: 295 -VNISQADAINGNFDN 309


>gi|317180337|dbj|BAJ58123.1| diaminopimelate epimerase [Helicobacter pylori F32]
          Length = 273

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYQIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +  ++F         +   +++  G  H + FVE       L S   L 
Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVLHLVGFVE---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|330841574|ref|XP_003292770.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum]
 gi|325076961|gb|EGC30707.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum]
          Length = 358

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/340 (18%), Positives = 115/340 (33%), Gaps = 67/340 (19%)

Query: 9   AKMEGIGNKILVID-------MRGCHDNITSDAIN----ALSTDD-NTHFDQIMLIHD-F 55
           +KM G GN  +V                ++ + I+     +S        DQ++++ D  
Sbjct: 19  SKMHGAGNDFVVFHINAVKRLNSDDESEVSIEEISKVTPKISHRKLGIGCDQLIIVDDSP 78

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---------FETIRGIL 106
           ++   +  + +INCDG     CGNG+RC  ++L     +              ET  G++
Sbjct: 79  KNKETNFGMHVINCDGVIEMMCGNGVRCASKYLLDNHIKSKSKSYEGNGEQLIETKSGVI 138

Query: 107 VA-------KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR---- 155
                      +      + +   +   KL+  +     +D        +          
Sbjct: 139 KTYPLLDHQNTDYKQDSRLMVKVNMGQPKLVSTSLKKYSLDEQILKKNSIPPKESFVITI 198

Query: 156 -----------NPFVVSMGNPHAIFFVEDDLY------------------HYDLASFGNL 186
                         +VS G  HA+ F++ ++                             
Sbjct: 199 DDLNLPYCNKIEIVLVSCGGAHAVVFLDRNIELGYFTQNYGKEDLSKINIKDLADKIQEH 258

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTW--ERGVGLTAACGSAACASVVASGCLHKTNR 244
                     V      +   E   +++   ERG G T ACG+ ACA  +A+  L+  N 
Sbjct: 259 PLFLKDTIPNVEFVYQSIKDKEINKVQSRVVERGSGETLACGTGACAVGIAAYLLNYVND 318

Query: 245 AVSV--KMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281
           +  +  +M GG LLI+W  + N  F TG A   +  +  +
Sbjct: 319 SSDISCEMPGGNLLIQWSSETNETFKTGPAVTLFNSEFTV 358


>gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395]
          Length = 300

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 94/300 (31%), Gaps = 38/300 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           + F K  G  N  +++  R     +T +   AL         D ++ +            
Sbjct: 7   LAFVKGHGTQNDFVILPDRQAQIELTEELTAALCDRQRGLGADGVLRVATAGSLVAEGVL 66

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                  + VD F+   N DGS  + CGNG+R    F  +        FT  +  G    
Sbjct: 67  ERLPDGVSGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGARPV 126

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           + +          +  +   + P+              G            V   +   +
Sbjct: 127 RIHSAD-----ETDAEVSVSMGPVVLEGAGRV------GIAGRTLTGEAVDVGNPHLACV 175

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS--------LESLDLRTWERGVG 220
                      L            F  G N+ I    +             +R +ERGVG
Sbjct: 176 VDGLTVADLAGLDLTTGAELDAAQFPHGANVEILTPLTAASDGGSADFHAHMRVFERGVG 235

Query: 221 LTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            T +CG+    A+  A     + + AV++ + GG +L+    +    + G ++    G+L
Sbjct: 236 ETRSCGTGLVAAAAAALSGAGRESGAVAITVPGGDVLVTVA-DGSAVLRGPSRLVARGEL 294


>gi|305432319|ref|ZP_07401482.1| diaminopimelate epimerase [Campylobacter coli JV20]
 gi|304444667|gb|EFM37317.1| diaminopimelate epimerase [Campylobacter coli JV20]
          Length = 249

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 99/278 (35%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++I+     D  ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVIINASEKKDR-SALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F       K    F T  G++ A  + +           
Sbjct: 58  FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANVDNN----------- 106

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                     S +       +I        +N  +   G PH + F E +L  +DL    
Sbjct: 107 ----------SVEVSLGKIKNIQDAFSECEKNWQLCDTGVPHLVHFCE-NLDEFDLKLCK 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +           N++  +V +  +L +RT+ERGV   T ACG+   A    +    K +
Sbjct: 156 QMRE-----KYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               V    G  L  ++ +N  +F  G+ +  +E   +
Sbjct: 211 NQARVIPKSGEELSFKF-ENEELFFKGKVRCCFEANYN 247


>gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS]
 gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS]
          Length = 313

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 105/304 (34%), Gaps = 30/304 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           V FAK  G  N  +++        +T   ++AL         D ++ +            
Sbjct: 21  VQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 80

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108
                   + D ++   N DGS  Q CGNG+R    +L       R  F   ++ G    
Sbjct: 81  ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 140

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +          E  ++   + L  S   +   R         F      V   +   +
Sbjct: 141 VLHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGR--------RFTGLGIDVGNPHLACV 192

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                +     L     +      F +GVN+ +       ++ +R  ERGVG T +CG+ 
Sbjct: 193 DTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGETRSCGTG 252

Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+ VA+          + V++ GG +      +   F+ G ++    G+L    G+W 
Sbjct: 253 TVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATGEL---AGEWW 308

Query: 288 KKNE 291
           + ++
Sbjct: 309 QSHQ 312


>gi|111225066|ref|YP_715860.1| diaminopimelate epimerase [Frankia alni ACN14a]
 gi|111152598|emb|CAJ64339.1| diaminopimelate epimerase [Frankia alni ACN14a]
          Length = 368

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 118/337 (35%), Gaps = 75/337 (22%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQ 56
           + F K  G GN  +V+        +T+D + AL         D ++ +            
Sbjct: 7   LRFVKGHGTGNDFVVLPDPDGDLELTADLVRALCDRRTGVGADGVLRVVLSAAVPEVAPL 66

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG 114
             +   F+   N DGS  + CGNG R   R+       +   FT  T  G+ + +    G
Sbjct: 67  AGAARWFMDYRNADGSVAEMCGNGARVFARYLVAAGYAQPGRFTIATRAGLRLVEVPAAG 126

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173
            ++VDMG P L                                  VSMGNPHA+ F +D 
Sbjct: 127 DVTVDMGPPRLSAGA---------------GSAVTVAERDFTAVGVSMGNPHAVCFADDL 171

Query: 174 DLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           D+            A  P+ F +GVN+ I  V     + +R +ERGVG TA+CG+ ACA 
Sbjct: 172 DVPALRDLDLTRPPAFSPVDFPDGVNVEIV-VERPGGVAMRVYERGVGETASCGTGACAV 230

Query: 233 VVASGCLHKTN-------------------------RAVSVK------------------ 249
            VA                                 R  +V                   
Sbjct: 231 AVAWAARQGLRPTPGSALASEPAPDAEPGQSAAAGVRPSAVSGVRHGAGAAPSAVEVEVE 290

Query: 250 --MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             + GGGL++ W     V + G A+  ++G L   + 
Sbjct: 291 VDVPGGGLVVVWRP-GTVLLRGPAELVYDGVLRPASL 326


>gi|281202622|gb|EFA76824.1| diaminopimelate epimerase [Polysphondylium pallidum PN500]
          Length = 343

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 3/150 (2%)

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           P   S      D   + P    F+ N  +VSMGNPH +  +E ++  + +  +G ++  H
Sbjct: 188 PKLLSIKSKQEDFCKMLPFKGHFI-NATLVSMGNPHCVVHLE-NVQDFPMDYYGEVIETH 245

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
           P+F +  N+    V S   +  R W+RG G T ACG+ ACA VVA     KT+R  +V M
Sbjct: 246 PIFPDKTNVEFVEVISSNQVRARVWQRGCGTTNACGTGACAIVVAGVLRGKTDRKCTVHM 305

Query: 251 LGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279
            GG L +EW +++ +V+ +G +   ++G +
Sbjct: 306 DGGSLEVEWRNEDEYVYHSGPSTTTFQGTV 335


>gi|317177601|dbj|BAJ55390.1| diaminopimelate epimerase [Helicobacter pylori F16]
          Length = 273

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           ++       L +    N+ +F  G  +    G L
Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYIGMGVL 263


>gi|317179070|dbj|BAJ56858.1| diaminopimelate epimerase [Helicobacter pylori F30]
          Length = 273

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   + +  G PH + FV+       L S   L 
Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYFIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 TLIPKSNESLELSLK-NDEIFYKGAVRYI 258


>gi|259507450|ref|ZP_05750350.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
 gi|29839331|sp|Q8FPE1|DAPF_COREF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|259164938|gb|EEW49492.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314]
          Length = 283

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 98/289 (33%), Gaps = 23/289 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----QDAS 59
           + FAK     N  ++I       ++T+D +  L         D ++ +        Q   
Sbjct: 5   IAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPG 64

Query: 60  VD---AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG 114
           VD    F+   N DGS  + CGNG+R    +      +    FT  T  G          
Sbjct: 65  VDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSAD 124

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                +    +    +    S   +    F    V+        VV    P A       
Sbjct: 125 R-DDAVVRVDMGPAAV-TGISTCMIADQPFAGMGVDLGNPHLACVVPGLTPAA------- 175

Query: 175 LYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-AS 232
           L +  L +     A  P      +   +A      ++ +R WERGVG T +CG+    A+
Sbjct: 176 LKNIALEAPVFDTAFFPRGVNVELVTELADGLDDPAIHMRVWERGVGETRSCGTGTVAAA 235

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             A     +    V+V + GG + +   +     +TG ++    G + I
Sbjct: 236 RAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 283


>gi|319441570|ref|ZP_07990726.1| diaminopimelate epimerase [Corynebacterium variabile DSM 44702]
          Length = 292

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 30/293 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           ++F K  G GN  +++   G   ++T + +  L+        D ++ I            
Sbjct: 4   LEFLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAGVI 63

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  D F+   N DGS  + CGNG+R     L      +             + 
Sbjct: 64  DEAPEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRREL 123

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIF 169
                        +     + L  S   +  + +H              V MGNPH A  
Sbjct: 124 TVHAVAGTTADVSVDMGAPVVLGESSATLAGETYH-----------GTGVDMGNPHLACV 172

Query: 170 FVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                         G L    P  F  GVNL +        + +R  ERGVG T +CG+ 
Sbjct: 173 VPGLSPEKLATLPVGLLPEWDPAFFPAGVNLELVTAPVDGVVHMRVHERGVGETLSCGTG 232

Query: 229 ACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             A+ VA+     +    V V++ GG + +     +   + G ++  + G ++
Sbjct: 233 TVAAAVAALRSTGEETGQVRVRIPGGEVQVTVSSESS-ELRGPSQLLFRGTVE 284


>gi|57504791|ref|ZP_00370823.1| diaminopimelate epimerase [Campylobacter coli RM2228]
 gi|57019352|gb|EAL56053.1| diaminopimelate epimerase [Campylobacter coli RM2228]
          Length = 249

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 99/278 (35%), Gaps = 34/278 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F       K    F T  G++ A  + +           
Sbjct: 58  FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANVDNN----------- 106

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                     S +       +I        +N  +   G PH + F E +L  +DL    
Sbjct: 107 ----------SVEVSLGKIKNIQDAFSECEKNWQLCDTGVPHLVHFCE-NLDEFDLKLCK 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +           N++  +V +  +L +RT+ERGV   T ACG+   A    +    K +
Sbjct: 156 QMRE-----KYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLD 280
               V    G  L  ++ +N  +F  G+ +  +E   +
Sbjct: 211 NQARVIPKSGEELSFKF-ENEELFFKGKVRYCFEANYN 247


>gi|220912235|ref|YP_002487544.1| diaminopimelate epimerase [Arthrobacter chlorophenolicus A6]
 gi|219859113|gb|ACL39455.1| Diaminopimelate epimerase [Arthrobacter chlorophenolicus A6]
          Length = 314

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 102/311 (32%), Gaps = 53/311 (17%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56
           + F+K  G GN  +++        I +  + AL         D ++     +        
Sbjct: 19  LRFSKGHGTGNDFVLVADPEGEHTIDAGHVAALCNRHLGIGGDGLIRAVPSRFLPEGREI 78

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVA 108
              +   + F+   N DGS  + CGNG+R  V FL +               T  G+   
Sbjct: 79  LAANPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLIDLPVGGALAIGTRGGLKTV 138

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
               DG          +       A++ D +               R    VSMGNPH +
Sbjct: 139 VRTADGYAVDMGPWEFIFPGE-ATAKAMDSLVTAE------GLEVPRPALSVSMGNPHTV 191

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
             +  +L   +        A  P+ + G N+     +         S+ +R  ERGVG T
Sbjct: 192 VAL-AELGELEATRLYTAPAVEPVPANGTNVEFVVPSEPLVLDGIGSVTMRVHERGVGET 250

Query: 223 AACGSAACASVVASGCLHKTNRA--VSVKM------------LGGGLLIEWHDNNHVFMT 268
            +CG+ ACA+ VA              V +             GG          HV ++
Sbjct: 251 QSCGTGACAAAVAIRHWAGAGAPDAWRVNVPGGVVGVKFFAGPGGH--------EHVELS 302

Query: 269 GEAKKEWEGKL 279
           G A     G L
Sbjct: 303 GPAVIVASGTL 313


>gi|269956053|ref|YP_003325842.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304734|gb|ACZ30284.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894]
          Length = 321

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 102/318 (32%), Gaps = 45/318 (14%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------------------ALST 40
            ++ + F K  G  N  +++        +T + +                      A++ 
Sbjct: 10  STTGLRFTKGHGTHNDFVLVADTRGDLELTPEQVRTLADRRGGIGGDGVIRLAPTAAIAR 69

Query: 41  DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE 100
                 DQ++     ++ +   F+   N DGS  + CGNG+R    F  S       T E
Sbjct: 70  AGEAVADQVL----AEEPAAIWFMDYRNADGSVAEMCGNGVRVFTAFAESLGLVDLDTTE 125

Query: 101 ----TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156
               T  G+   ++             +  W+L     +          +        R 
Sbjct: 126 LALGTRAGVKRVRKETGPDGVPWYAVDLGPWRL--PGGAEAAAAGADAAVAVRGWAAPRP 183

Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL--------E 208
              V +GNPH +  +        +          P    G N+ +               
Sbjct: 184 ALSVDLGNPHTVVALGSTDELARID-LTQAPQVAPPPPHGTNVELVVPLEETTSGAETAG 242

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-----RAVSVKMLGGGLLIEWHDNN 263
            + +R  ERGVG T +CG+ A A+ +A                 V++ GG L +    + 
Sbjct: 243 RVRMRVHERGVGETQSCGTGAVAAALAVRTWAAAGGRAPVDTWFVEVPGGLLRVRVLTDG 302

Query: 264 HVFMTGEAKKEWEGKLDI 281
           H  + G A+  + G+  +
Sbjct: 303 HAELAGPAQLVFSGETTL 320


>gi|227529337|ref|ZP_03959386.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350765|gb|EEJ41056.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540]
          Length = 329

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 32/293 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNT--HFDQIMLIHDFQD 57
           M +  K+ G  N   ++D       +T D + AL+      +       D +++++    
Sbjct: 1   MTELLKVHGSQNCFFILDQTKLQRELTDDELVALAQQITSKEHGLLGGADGVLVVNRPVR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R   + F  +T+   L  ++  D    
Sbjct: 61  EGATAQMRVINADGSEASMCGNGLRTVARYVAERDNLEDFKVDTMDASLRVRKQPD---- 116

Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171
           +  G P    ++ P+     A  +D +  DR     V  L     F  +++ NPH I F 
Sbjct: 117 LASGVPAFAVEISPVRFNKEALPYDHLGHDRLLNTLVPELLPGYRFSGIAVPNPHLISF- 175

Query: 172 EDDLYHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
              +        G L       +P FS+GVN++   +     + ++T+ERGVG T ACG+
Sbjct: 176 ---VDENGFKELGPLGEWLNGENPYFSDGVNVNFGHILGPNKIFVKTYERGVGFTNACGT 232

Query: 228 AACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273
              A+ +A   +H       + ++V   GG +    H  NH   + + G A  
Sbjct: 233 GMSATSLAFALIHPELASFGKPITVFNPGGMVRTILHHENHRYWIELIGNATF 285


>gi|257458717|ref|ZP_05623841.1| diaminopimelate epimerase [Campylobacter gracilis RM3268]
 gi|257443906|gb|EEV19025.1| diaminopimelate epimerase [Campylobacter gracilis RM3268]
          Length = 292

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 97/292 (33%), Gaps = 23/292 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA--SVDAF 63
           +  +K    GN  ++        + +  A       D    D ++++    +    ++  
Sbjct: 1   MKISKYNASGNDFVIF-TDSVKADRSKLARELCDRRDGVGADGLIVVLPKFNGIEGINFE 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
               N DGS    CGNG R V           + + + + G  V      G    ++ E 
Sbjct: 60  WEFYNSDGSSADMCGNGSRAVC-MYAYENFLAAQSMKFLSGAGVISGEIFGIFGGNLSES 118

Query: 124 ILD--------------WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
           +                     L  + + M      +G          +  + G PH + 
Sbjct: 119 MRGELRNVSFGEIFNLRPNAHALVANVEVMLTRPKRLGESFEEAGLTWYFYNTGVPHLVT 178

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSA 228
           FV  DL  +D     +L  K+        +      + + L +RT+ERGV   T ACG+ 
Sbjct: 179 FVS-DLNEFDAVLARDLREKYNANVNYALVQ--SRLASKILKVRTFERGVEAETLACGTG 235

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
             A  +A          + V    G  L +   D   ++  G+ +  ++G+ 
Sbjct: 236 MAACFIAGVENMGLASDIRVIPASGETLNLRLGDGGKIYFRGDVRHTFDGEF 287


>gi|148543844|ref|YP_001271214.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016]
 gi|184153245|ref|YP_001841586.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112]
 gi|227364748|ref|ZP_03848797.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3]
 gi|325682625|ref|ZP_08162142.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A]
 gi|148530878|gb|ABQ82877.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016]
 gi|183224589|dbj|BAG25106.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112]
 gi|227070207|gb|EEI08581.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3]
 gi|324978464|gb|EGC15414.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A]
          Length = 333

 Score =  119 bits (298), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/307 (24%), Positives = 132/307 (42%), Gaps = 20/307 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D     + +  + +           +      D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTNPLNDEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D +  
Sbjct: 61  PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPG 120

Query: 118 VDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED-D 174
           V      +   K    A  FD +   R     V  L+    F  +++ NPH I FV   +
Sbjct: 121 VPAFAVEISPVKFDRTALPFDNLGHKRLLDTLVPELYPSLRFSALAVPNPHLISFVSMEE 180

Query: 175 LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           L    L   G    + +P FS+GVN++   +     L ++T+ERGVG T ACG+   A+ 
Sbjct: 181 LNGSALKELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS 240

Query: 234 VASGCLHK----TNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIKTGKW 286
           +A    H      N  +SV   GG +  I   D+ +  + + G A   +   + ++    
Sbjct: 241 LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVEESTI 298

Query: 287 IKKNEDD 293
            ++N D+
Sbjct: 299 HQENLDE 305


>gi|297379767|gb|ADI34654.1| diaminopimelate epimerase [Helicobacter pylori v225d]
          Length = 273

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A    +  +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258


>gi|308063644|gb|ADO05531.1| diaminopimelate epimerase [Helicobacter pylori Sat464]
          Length = 273

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  VA+   + T    
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFVAARIFYSTPEKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 ALIPKSSESLELSLK-NDEIFYKGAVRYI 258


>gi|217033511|ref|ZP_03438940.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10]
 gi|216944036|gb|EEC23467.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10]
          Length = 273

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 101/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258


>gi|188527587|ref|YP_001910274.1| diaminopimelate epimerase [Helicobacter pylori Shi470]
 gi|229807502|sp|B2UTR2|DAPF_HELPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|188143827|gb|ACD48244.1| diaminopimelate epimerase [Helicobacter pylori Shi470]
          Length = 273

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T    
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPEKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 ALIPKSSESLELSLK-NDEIFYKGAVRYI 258


>gi|320094014|ref|ZP_08025839.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979058|gb|EFW10576.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 324

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 99/314 (31%), Gaps = 48/314 (15%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G GN  +V        + +++ + AL +       D  +            F+   N
Sbjct: 14  KAHGCGNSFVVATDADDSHDPSAEEVRALCSQAFGIGADGFIRCVRS---GGAWFMDYRN 70

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKENRDGSISVDMGEP 123
            DGS+ + CGNG+R  V  L           +S    T  G    +   +       G  
Sbjct: 71  ADGSKAEMCGNGVRVFVDHLRREGLVRLAPGESLEVLTRGGTRTVELVAEAGGGAAEGCG 130

Query: 124 ILDWKLIPLA-----------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
                    A                  R+   +       + +   V M NPH +  V+
Sbjct: 131 EGGGAAGCGAAEDGAQYRVDMGPASSPARETVKVSVPGIPGVLSGIWVDMPNPHTVVAVD 190

Query: 173 ----------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWER 217
                       +    +A      A  P   EG NL +    +        L +R  ER
Sbjct: 191 SLAALEGAQLPAVDAARVA-PQMRPAYEPEPREGTNLELVVDLTREGDEVGHLRMRVLER 249

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD----------NNHV 265
           GVG T ACG+  CA+ VA+             V + GG + ++                V
Sbjct: 250 GVGETMACGTGCCAAAVATALRRGPGAPASWIVDVPGGRVRVDIDGVIDWDGPGLTGAPV 309

Query: 266 FMTGEAKKEWEGKL 279
           F+TG A +  E  +
Sbjct: 310 FLTGPATRVAEIVI 323


>gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247]
 gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 33/296 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52
           + F K  G  N  +++       +I +  + AL         D ++ +            
Sbjct: 7   LRFVKGHGTQNDFVILADPAADLDIDASLVAALCDRPRGIGADGLLRVARAGALVAAGVL 66

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                  A  D F+   N DGS  + CGNG+R    FL +R       FT  +  G    
Sbjct: 67  EMLPDGVAPDDWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGGRPV 126

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
             +                  + +      +D D       +        V +      +
Sbjct: 127 TVHSHD----------ALSADVTVEMGQATVDFDAAVRIGDDLYVGTKVDVGNPHLACVV 176

Query: 169 FFVEDD----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             ++ D    +              H    E +         + +  +R +ERGVG T +
Sbjct: 177 GDLDVDELAAVDFTAGVRLEAADFPHGANVELLTRPAVADDGVLTAHMRVFERGVGETRS 236

Query: 225 CGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CG+   A+  A+     +    + + + GG +L+         + G +    EG+L
Sbjct: 237 CGTGLVAAAAAAFAGRGEPGGDLRIHVPGGTVLVTIAATGT-RLRGPSMLVAEGEL 291


>gi|108562970|ref|YP_627286.1| diaminopimelate epimerase [Helicobacter pylori HPAG1]
 gi|123073806|sp|Q1CTW0|DAPF_HELPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|107836743|gb|ABF84612.1| diaminopimelate epimerase [Helicobacter pylori HPAG1]
          Length = 273

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DVIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEGLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|227544854|ref|ZP_03974903.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A]
 gi|300909925|ref|ZP_07127385.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112]
 gi|227185174|gb|EEI65245.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A]
 gi|300892573|gb|EFK85933.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112]
          Length = 333

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 20/307 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T   +         T +      D +++++    
Sbjct: 1   MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTR 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
               A +R+IN DGSE   CGNG+R V R++  R     F  +T+   L  +++ D +  
Sbjct: 61  PGSVAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPG 120

Query: 118 VDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED-D 174
           V      +   K    A  FD +  +R     V  L+    F  +++ NPH I FV   +
Sbjct: 121 VPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNLRFSALAVPNPHLISFVSMEE 180

Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
           L    L   G  L      FS+GVN++   +     L ++T+ERGVG T ACG+   A+ 
Sbjct: 181 LNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS 240

Query: 234 VASGCLHK----TNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIKTGKW 286
           +A    H      N  +SV   GG +  I   D+ +  V + G A   +   + ++    
Sbjct: 241 LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWVELIGNAT--FTHIITVEESTI 298

Query: 287 IKKNEDD 293
            ++N D+
Sbjct: 299 HQENLDE 305


>gi|254779442|ref|YP_003057547.1| diaminopimelate epimerase [Helicobacter pylori B38]
 gi|254001353|emb|CAX29338.1| Diaminopimelate epimerase (DAP epimerase) [Helicobacter pylori B38]
          Length = 272

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCKKFFSSDSVLENIPMFYLIDTGVPHLVGFVK---NKRLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N+++A + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINVAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|308184349|ref|YP_003928482.1| diaminopimelate epimerase [Helicobacter pylori SJM180]
 gi|308060269|gb|ADO02165.1| diaminopimelate epimerase [Helicobacter pylori SJM180]
          Length = 273

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +  + D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSR--NYDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYQIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   ++++ G PH + FV+       L S     
Sbjct: 120 DTIP------ALRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVK---NKEWLNSLNTPE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H T +  
Sbjct: 171 LRALRHEFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G A+  
Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGVARYI 258


>gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950]
          Length = 288

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 111/303 (36%), Gaps = 33/303 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +V+       ++T   + AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVVLPDPAAELSLTGSRVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A+ D ++   N DGS  Q CGNG+R    +L +         E     +V   
Sbjct: 61  DRLPDGVAADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASG------LEDRDDFVVGSL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168
                +SV   +       + + ++      D    G        +   + +GNPH   +
Sbjct: 115 AGPRPVSVHRVDGTTADISVDMGKANTLGPGDAVLGGRR-----FSGVAIDVGNPHLACV 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                      L     +      F +GVN+ I       ++ +R  ERGVG T +CG+ 
Sbjct: 170 DPDLTVDALAALDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGETRSCGTG 229

Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+ VA+      +   ++V++ GG +++   D    ++ G +     G++   + +W 
Sbjct: 230 TVAAAVAALAGTGADTGTLTVRVPGGEVVVTITDATS-YLRGPSVLVAHGEI---SEEWW 285

Query: 288 KKN 290
           ++ 
Sbjct: 286 REQ 288


>gi|307722038|ref|YP_003893178.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294]
 gi|306980131|gb|ADN10166.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294]
          Length = 252

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 30/279 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  AK    GN  ++       +     A       D    D +++I    +   D    
Sbjct: 1   MKIAKYSANGNDFVIFHDDKKEERY-ELAKTLCHRQDGIGADGLIVIVP--NDEYDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    +  +      +  F T  G++ A+   +   S  +   +
Sbjct: 58  FYNSDGSHADMCGNGSRACAHYAYNNGLAPATMHFMTGAGVIGAQVEENTPKSGMVESEL 117

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
              ++I     FD                  N ++++ G PH + + ++           
Sbjct: 118 TPPEIIETEIEFD----------------GHNWWLINTGVPHLVRYTDN-------IKEF 154

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
           +      +                +L +RT+ERGV   T ACG+   A    +       
Sbjct: 155 DTEEARELRYVYNANVNIMYIEDGNLRVRTYERGVEDETLACGTGMAACFYRAYKEGNVQ 214

Query: 244 RAVSVK-MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             + V    G  L + ++    +   G  KK +E + D+
Sbjct: 215 NNIEVYPTSGDTLYLGYNGK-TITFKGRVKKTFETEWDV 252


>gi|300214571|gb|ADJ78987.1| Diaminopimelate epimerase (DAP epimerase) [Lactobacillus salivarius
           CECT 5713]
          Length = 325

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 123/311 (39%), Gaps = 30/311 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIHDFQDA 58
           ++  K+ G GN   ++D          + +   A      D       D ++ +      
Sbjct: 1   MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ-AGHE 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T    + A      +  +
Sbjct: 60  GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQT----MHADLEVKKADKL 115

Query: 119 DMGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
               P  D ++ P++     +                         V++ NPH I FV+ 
Sbjct: 116 AEKVPAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSETIKFSAVAVPNPHLIAFVDH 175

Query: 174 DL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +          +       +P+F +GVN+S   +     + +RT+ERGVG T ACG+A  
Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKLDIK 282
           AS +    LH       + ++V   GG +   +   +N   +M+  G A +  +  ++I 
Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAK--VNIS 293

Query: 283 TGKWIKKNEDD 293
               I  N D+
Sbjct: 294 QADAINGNFDN 304


>gi|78778240|ref|YP_394555.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251]
 gi|78498780|gb|ABB45320.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251]
          Length = 257

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 36/283 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF-------QDA 58
           +   K    GN  ++       D  +  A       +    D ++++            +
Sbjct: 1   MRVTKYSANGNDFVIFHTFVKKDR-SLLAKKLCHRQNGIGADGLIVLLPKSKNEIGGDKS 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
            +D   +  N DGSE   CGNG R    +       ++         ++        +  
Sbjct: 60  KIDFEWQFYNSDGSEANMCGNGSRACAHYAYVNELAQNVMKFLTGAGIIGAVVDGDMVLS 119

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
           ++  P +  K I                        ++ +++  G PH ++F + D+  +
Sbjct: 120 ELTPPKIIDKEI--------------------LENGKSWWLLDTGVPHLVYFTK-DITKF 158

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237
           D+A           ++  VN++     +   L +RT+ERGV   T ACG+   A    + 
Sbjct: 159 DIAE---ARELRDKYNANVNIAFIEGKN---LRVRTYERGVEDETLACGTGMAACFYRAY 212

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                   + V    G  L    ++  +   G  +  +  ++D
Sbjct: 213 SEKVVGNDIEVYPTSGETLYLGVNDRTITFRGRVRSIFSAEID 255


>gi|317013985|gb|ADU81421.1| diaminopimelate epimerase [Helicobacter pylori Gambia94/24]
          Length = 272

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   ++++ G PH + FV+       L S   L 
Sbjct: 120 DTIP------NLRCKKFFTNDSVLENIPMFYLINTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  + +   H T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVAHLFHNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G A+  
Sbjct: 231 TLIPKSNESLELSLK-NDEIFYKGVARYI 258


>gi|315586749|gb|ADU41130.1| diaminopimelate epimerase [Helicobacter pylori 35A]
          Length = 273

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  + +   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           ++       L +    N+ +F  G  +    G L
Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYIGMGVL 263


>gi|15645191|ref|NP_207361.1| diaminopimelate epimerase [Helicobacter pylori 26695]
 gi|6014914|sp|O25290|DAPF_HELPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2313673|gb|AAD07622.1| diaminopimelate epimerase (dapF) [Helicobacter pylori 26695]
          Length = 273

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FVE       L S   L 
Sbjct: 120 DVIP------ALRCEKFFSSGSVLEHIPTFYLIDTGVPHLVGFVE---NKEGLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707]
 gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707]
          Length = 289

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 34/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           ++F+K  G  N  +++        + +  + AL         D ++ +            
Sbjct: 1   MEFSKGHGTENDFVILPDPDADLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                   + D F+   N DGS  + CGNG+R    +L +     R  F   +  G    
Sbjct: 61  PELPEGVGADDWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
             +    +  D+   +                R+           +     + +GNPH  
Sbjct: 121 HVHSADHVHGDVTVDM-------------GRVRELGTSTATVGGRVLEGIGIDVGNPHLA 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +           L            F EGVN+ I       ++ +R  ERGVG T +CG
Sbjct: 168 CVDPDLTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSCG 227

Query: 227 SAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +   A+ VA+       +  V V++ GG + +   D     + G +     G++D
Sbjct: 228 TGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGRID 281


>gi|308182722|ref|YP_003926849.1| diaminopimelate epimerase [Helicobacter pylori PeCan4]
 gi|308064907|gb|ADO06799.1| diaminopimelate epimerase [Helicobacter pylori PeCan4]
          Length = 273

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +  + D      
Sbjct: 3   FYKYSGSGNDFLIAQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSR--NYDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYEIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   ++++ G PH + FV+       L S   L 
Sbjct: 120 DTIP------NLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G A+  
Sbjct: 231 TLIPKSNEFLELSLK-NDEIFYKGVARYI 258


>gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S]
 gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S]
          Length = 289

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 34/295 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           ++F+K  G  N  +++        + +  + AL         D ++ +            
Sbjct: 1   MEFSKGHGTENDFVILPDPDVDLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
                   + D F+   N DGS  + CGNG+R    +L +     R  F   +  G    
Sbjct: 61  PELPEGVGADDWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
             +    +  D+   +                R+           +     + +GNPH  
Sbjct: 121 HVHSADHVHGDVTVDM-------------GRVRELGTSTATVGGRVLEGIGIDVGNPHLA 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +           L            F EGVN+ I       ++ +R  ERGVG T +CG
Sbjct: 168 CVDPDLTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSCG 227

Query: 227 SAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           +   A+ VA+       +  V V++ GG + +   D     + G +     G++D
Sbjct: 228 TGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGRID 281


>gi|90961833|ref|YP_535749.1| diaminopimelate epimerase [Lactobacillus salivarius UCC118]
 gi|301301180|ref|ZP_07207336.1| diaminopimelate epimerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|122449030|sp|Q1WTU5|DAPF_LACS1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|90821027|gb|ABD99666.1| Diaminopimelate epimerase [Lactobacillus salivarius UCC118]
 gi|300851179|gb|EFK78907.1| diaminopimelate epimerase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 325

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 125/311 (40%), Gaps = 30/311 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIHDFQDA 58
           ++  K+ G GN   ++D          + +   A      D       D ++ +      
Sbjct: 1   MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ-AGHE 59

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             D  +R+IN DGSE   CGNG+R V R+L+ +     F  +T    + A      +  +
Sbjct: 60  GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQT----MHADLEVKKADKL 115

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-----NPFVVSMGNPHAIFFVED 173
               P  D ++ P++     +         ++              V++ NPH I FV+ 
Sbjct: 116 AEKVPAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLIAFVDH 175

Query: 174 DL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +          +       +P+F +GVN+S   +     + +RT+ERGVG T ACG+A  
Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKLDIK 282
           AS +    LH       + ++V   GG +   +   +N   +M+  G A +  +  ++I 
Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAK--VNIS 293

Query: 283 TGKWIKKNEDD 293
               I  N D+
Sbjct: 294 QADAINGNFDN 304


>gi|317012380|gb|ADU82988.1| diaminopimelate epimerase [Helicobacter pylori Lithuania75]
          Length = 273

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
            +IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DIIP------ALRCEKFFTNDSVLENILTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|157736415|ref|YP_001489098.1| diaminopimelate epimerase [Arcobacter butzleri RM4018]
 gi|157698269|gb|ABV66429.1| diaminopimelate epimerase [Arcobacter butzleri RM4018]
          Length = 246

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 99/276 (35%), Gaps = 38/276 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + K    GN  ++        +  ++AI   +  +    D  +++     +  D    
Sbjct: 1   MTYTKYSASGNDFIISHSF-IEKDYKAEAIKLCNRTEGIGADGFVVLVPS--SEADFKWL 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  R V  +  +     +     + G  +                  
Sbjct: 58  FYNSDGSDASMCGNATRAVTHYAYTNGLINTNQARFLTGAGI------------------ 99

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLAS 182
               I      D ++        +N  F  + F   +V  G PH +  V+ DL  Y+   
Sbjct: 100 ----IKAVVENDIVETQLTKAKVINEEFSEDGFIWHLVDTGVPHLVTIVD-DLNLYNHEL 154

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241
              +      +    N++ A++ +  ++ +RT+ERGV   T ACG+   AS + +  L  
Sbjct: 155 CAKM-----RYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKL 208

Query: 242 TNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276
            N    V    G  L +    +N ++  G  KK + 
Sbjct: 209 VNDTTFVYPKSGEELTLSIK-DNTIYFKGAVKKVFT 243


>gi|58697432|ref|ZP_00372732.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536143|gb|EAL59749.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 242

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 95/252 (37%), Positives = 137/252 (54%), Gaps = 17/252 (6%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           +ID    +D   +     ++  +    DQ+++I +   A  D F+ I N DGS+ + CGN
Sbjct: 1   IIDSCSANDL--NWNYKKIANQN--GCDQVIVITNSSLA--DCFMHIYNADGSKAEMCGN 54

Query: 80  GMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138
             RCV   L S    +  T E   + IL   +  D SI V+MG+P+L W  IPL+   D 
Sbjct: 55  AARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLLKWHKIPLSTECDT 114

Query: 139 MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVN 198
           +        P+    L++P  V++GNPH +FFV+  +    L S G  L  H +F + +N
Sbjct: 115 L------HLPIELEMLKDPVAVNIGNPHIVFFVD-SVNEIPLQSLGPKLENHALFPQKIN 167

Query: 199 LSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLI 257
           +SIA+V     + LR WERG G+TA+CGSAACA++V S      T +  SV + GG LLI
Sbjct: 168 ISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQQTSVNLPGGKLLI 227

Query: 258 EWHDNNHVFMTG 269
           EW   N+VFMTG
Sbjct: 228 EWA--NNVFMTG 237


>gi|260187742|ref|ZP_05765216.1| diaminopimelate epimerase [Mycobacterium tuberculosis CPHL_A]
 gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A]
 gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A]
          Length = 289

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60
           M+ FAK  G  N  +++        +T+  + AL         D ++ +     A     
Sbjct: 1   MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 59

Query: 61  -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                      D ++   N DGS  Q CGNG+R    +L +         E     +V  
Sbjct: 60  LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 113

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
                 ++    E       + + ++      +    G   H        V +GNPH   
Sbjct: 114 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 168

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +           L     +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 169 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              A+ VA+     +    ++V + GG +++   D    F+ G +     G L      W
Sbjct: 229 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTITDATS-FLRGPSVLVARGDL---ADDW 284

Query: 287 IKK 289
              
Sbjct: 285 WNA 287


>gi|213021465|ref|ZP_03335912.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 86

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 5  MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63
          M+ F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  +D  
Sbjct: 1  MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60

Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT 89
           RI N DGSEV  CGNG RC  R   
Sbjct: 61 YRIFNADGSEVSQCGNGARCFARICR 86


>gi|261839605|gb|ACX99370.1| diaminopimelate epimerase [Helicobacter pylori 52]
          Length = 273

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +  ++F         +   +++  G PH + FVE       L S   L 
Sbjct: 120 DTIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVE---NKEGLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   +   +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNMPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase
           Mycobacterium Tuberculosis Dapf
          Length = 290

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 104/304 (34%), Gaps = 34/304 (11%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-- 60
            M+ FAK  G  N  +++        +T+  + AL         D ++ +     A    
Sbjct: 1   HMI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVG 59

Query: 61  ------------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA 108
                       D ++   N DGS  Q CGNG+R    +L +         E     +V 
Sbjct: 60  VLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVG 113

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166
                  ++    E       + + ++      +    G   H        V +GNPH  
Sbjct: 114 SLAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLA 168

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            +           L     +      F +GVN+ +       ++ +R  ERGVG T +CG
Sbjct: 169 CVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCG 228

Query: 227 SAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           +   A+ VA+     +    ++V + GG +++   D    F+ G +     G L      
Sbjct: 229 TGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADD 284

Query: 286 WIKK 289
           W   
Sbjct: 285 WWNA 288


>gi|15611580|ref|NP_223231.1| diaminopimelate epimerase [Helicobacter pylori J99]
 gi|8134397|sp|Q9ZLR5|DAPF_HELPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|4155052|gb|AAD06089.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99]
          Length = 273

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   ++++ G PH + FV+       L S   L 
Sbjct: 120 DTIP------NLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFHNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G A+  
Sbjct: 231 TLIPKSNEFLELSLKNDG-IFYKGVARYI 258


>gi|308061897|gb|ADO03785.1| diaminopimelate epimerase [Helicobacter pylori Cuz20]
          Length = 273

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 100/269 (37%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+I       + ++ A    +  +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIIQSFKKK-DFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +  ++F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T    
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPEKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258


>gi|255326354|ref|ZP_05367438.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296]
 gi|255296571|gb|EET75904.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296]
          Length = 311

 Score =  116 bits (290), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 98/292 (33%), Gaps = 29/292 (9%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDF-----------Q 56
            K  G GN  + +        +T + +  A         D  +                +
Sbjct: 17  TKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKLLEE 76

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                 F+   N DGS  + CGNG+R  V +L +    +    ET++    A        
Sbjct: 77  HPDAVWFMDYRNGDGSIAEMCGNGVRAFVEYLRTEGLVELEVGETVKIGTRAGVKTVART 136

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                  +  W  I       +   +   +        R    +SMGNPH +  +  D  
Sbjct: 137 EEGYAIDMGPWSFI--HGEAAREGGEDCLVSARGLKTPRAGLSISMGNPHTVVMLGSDGK 194

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--------LDLRTWERGVGLTAACGSA 228
              L    +L   +P    G N+       L+         + +R  ERGVG T +CG+ 
Sbjct: 195 LDGLD-LHSLPQVNPAPVNGTNVEFVVPVDLDVESGAQVGAIRMRVHERGVGETLSCGTG 253

Query: 229 ACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKE 274
           ACA+  A+      +      V + GG L + +     D  HV + G A+  
Sbjct: 254 ACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQMV 305


>gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478]
          Length = 290

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 106/307 (34%), Gaps = 38/307 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----------- 52
           M+ FAK  G  N  +++       ++ +  I AL         D ++ +           
Sbjct: 1   MM-FAKGHGTENDFVLLPDIKAQLSLGTAQIAALCDRRRGLGADGVLRVTTAEAAAAAGV 59

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV 107
                    + D ++   N DGS  Q CGNG+R    +L +    +R  F   ++ G   
Sbjct: 60  LDRLPDGVGAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRP 119

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH- 166
              +   + + D+   +     I    +                        V +GNPH 
Sbjct: 120 VTVHSVDASNADVTVDMGKANRIGTGTAV-------------VGGRRFPGLAVDVGNPHL 166

Query: 167 -AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
             +           L     +      F +GVN+ +        + +R  ERGVG T +C
Sbjct: 167 ACLDPRLTVADLAALDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGETRSC 226

Query: 226 -GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
                 A+V A          ++V++ GG + +   D    F+ G +     G++   +G
Sbjct: 227 GTGTVAAAVAALAGAGAETGTLTVRVPGGDVAVTVTDATS-FLRGPSVLVATGEV---SG 282

Query: 285 KWIKKNE 291
           +W +  +
Sbjct: 283 EWWRAQQ 289


>gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006]
 gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006]
          Length = 292

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60
           M+ FAK  G  N  +++        +T+  + AL         D ++ +     A     
Sbjct: 4   MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 62

Query: 61  -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                      D ++   N DGS  Q CGNG+R    +L +         E     +V  
Sbjct: 63  LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 116

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
                 ++    E       + + ++      +    G   H        V +GNPH   
Sbjct: 117 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 171

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +           L     +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 172 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              A+ VA+     +    ++V + GG +++   D    F+ G +     G L      W
Sbjct: 232 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADDW 287

Query: 287 IKK 289
              
Sbjct: 288 WNA 290


>gi|261838191|gb|ACX97957.1| diaminopimelate epimerase [Helicobacter pylori 51]
          Length = 273

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   +     + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREIFICIEEPNIIESNLGNYQIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258


>gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C]
 gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001]
 gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002]
 gi|308371113|ref|ZP_07423854.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003]
 gi|308373492|ref|ZP_07432514.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005]
 gi|308377111|ref|ZP_07441155.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008]
 gi|308378079|ref|ZP_07481445.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009]
 gi|308379298|ref|ZP_07485780.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010]
 gi|308380455|ref|ZP_07489998.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011]
 gi|308405951|ref|ZP_07494533.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012]
 gi|124601885|gb|EAY60895.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C]
 gi|308214661|gb|EFO74060.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001]
 gi|308326306|gb|EFP15157.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002]
 gi|308329835|gb|EFP18686.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003]
 gi|308337474|gb|EFP26325.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005]
 gi|308348970|gb|EFP37821.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008]
 gi|308353670|gb|EFP42521.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009]
 gi|308357518|gb|EFP46369.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010]
 gi|308361471|gb|EFP50322.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011]
 gi|308365066|gb|EFP53917.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012]
 gi|323718719|gb|EGB27881.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis
           CDC1551A]
          Length = 292

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60
           M+ FAK  G  N  +++        +T+  + AL         D ++ +     A     
Sbjct: 4   MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 62

Query: 61  -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                      D ++   N DGS  Q CGNG+R    +L +         E     +V  
Sbjct: 63  LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 116

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
                 ++    E       + + ++      +    G   H        V +GNPH   
Sbjct: 117 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 171

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +           L     +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 172 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              A+ VA+     +    ++V + GG +++   D    F+ G +     G L      W
Sbjct: 232 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADDW 287

Query: 287 IKK 289
              
Sbjct: 288 WNA 290


>gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv]
 gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551]
 gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97]
 gi|121638601|ref|YP_978825.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662567|ref|YP_001284090.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|148823914|ref|YP_001288668.1| diaminopimelate epimerase [Mycobacterium tuberculosis F11]
 gi|167967448|ref|ZP_02549725.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|215404690|ref|ZP_03416871.1| diaminopimelate epimerase [Mycobacterium tuberculosis 02_1987]
 gi|215412531|ref|ZP_03421265.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428155|ref|ZP_03426074.1| diaminopimelate epimerase [Mycobacterium tuberculosis T92]
 gi|215431662|ref|ZP_03429581.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|215446978|ref|ZP_03433730.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|218754461|ref|ZP_03533257.1| diaminopimelate epimerase [Mycobacterium tuberculosis GM 1503]
 gi|219558734|ref|ZP_03537810.1| diaminopimelate epimerase [Mycobacterium tuberculosis T17]
 gi|224991093|ref|YP_002645782.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798193|ref|YP_003031194.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           1435]
 gi|254365381|ref|ZP_04981426.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551781|ref|ZP_05142228.1| diaminopimelate epimerase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260201850|ref|ZP_05769341.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|260206034|ref|ZP_05773525.1| diaminopimelate epimerase [Mycobacterium tuberculosis K85]
 gi|289444268|ref|ZP_06434012.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|289553490|ref|ZP_06442700.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605]
 gi|289570902|ref|ZP_06451129.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17]
 gi|289575423|ref|ZP_06455650.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85]
 gi|289746528|ref|ZP_06505906.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987]
 gi|289751380|ref|ZP_06510758.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92]
 gi|289754829|ref|ZP_06514207.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|289758854|ref|ZP_06518232.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|289762897|ref|ZP_06522275.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503]
 gi|294994184|ref|ZP_06799875.1| diaminopimelate epimerase [Mycobacterium tuberculosis 210]
 gi|297635333|ref|ZP_06953113.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN 4207]
 gi|297732329|ref|ZP_06961447.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN R506]
 gi|298526195|ref|ZP_07013604.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|306790128|ref|ZP_07428450.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004]
 gi|306807474|ref|ZP_07444142.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007]
 gi|313659662|ref|ZP_07816542.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN V2475]
 gi|54036946|sp|P63898|DAPF_MYCBO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|54040932|sp|P63897|DAPF_MYCTU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225732|sp|A1KM64|DAPF_MYCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|166225736|sp|A5U678|DAPF_MYCTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767116|sp|C1AFI5|DAPF_MYCBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|2292960|emb|CAB10902.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882556|gb|AAK47115.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551]
 gi|31619492|emb|CAD94930.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494249|emb|CAL72727.1| Probable diaminopimelate epimerase dapF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|134150894|gb|EBA42939.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506719|gb|ABQ74528.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra]
 gi|148722441|gb|ABR07066.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis F11]
 gi|224774208|dbj|BAH27014.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319696|gb|ACT24299.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           1435]
 gi|289417187|gb|EFD14427.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46]
 gi|289438122|gb|EFD20615.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605]
 gi|289539854|gb|EFD44432.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85]
 gi|289544656|gb|EFD48304.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17]
 gi|289687056|gb|EFD54544.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987]
 gi|289691967|gb|EFD59396.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92]
 gi|289695416|gb|EFD62845.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054]
 gi|289710403|gb|EFD74419.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503]
 gi|289714418|gb|EFD78430.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85]
 gi|298495989|gb|EFI31283.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308333478|gb|EFP22329.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004]
 gi|308346069|gb|EFP34920.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007]
 gi|326904341|gb|EGE51274.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis W-148]
 gi|328457966|gb|AEB03389.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN
           4207]
          Length = 289

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60
           M+ FAK  G  N  +++        +T+  + AL         D ++ +     A     
Sbjct: 1   MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 59

Query: 61  -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
                      D ++   N DGS  Q CGNG+R    +L +         E     +V  
Sbjct: 60  LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 113

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167
                 ++    E       + + ++      +    G   H        V +GNPH   
Sbjct: 114 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 168

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227
           +           L     +      F +GVN+ +       ++ +R  ERGVG T +CG+
Sbjct: 169 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228

Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
              A+ VA+     +    ++V + GG +++   D    F+ G +     G L      W
Sbjct: 229 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADDW 284

Query: 287 IKK 289
              
Sbjct: 285 WNA 287


>gi|317181881|dbj|BAJ59665.1| diaminopimelate epimerase [Helicobacter pylori F57]
          Length = 273

 Score =  116 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L++       + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|213964457|ref|ZP_03392657.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46]
 gi|213952650|gb|EEB64032.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46]
          Length = 307

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 112/308 (36%), Gaps = 29/308 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI----------- 52
           MV FAK  G  N  L+         +T   + A+         D ++ +           
Sbjct: 1   MVSFAKGHGTQNDFLIFPDDLVSIELTESLVAAVCDRQRGLGADGVLRVARAGKLVDAGV 60

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRG 104
                    + D F+   N DGS  + CGNG+R    ++ +          +    T  G
Sbjct: 61  LTALPEGVKADDWFMDYRNSDGSIAEMCGNGVRVFGHYIAAIHSPDSVVDGTLRVGTRAG 120

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +     +        +G  +   +++ LA +F     +      +            M  
Sbjct: 121 LRAVSIDELSRRHAVVGVNMGQPEVLGLATAFIGSGNNALKFAGIGVDVGNPHLACVMPG 180

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGVGLTA 223
             A    E +L     +    + A   MF  G+NL I       +S+ +R  ERGVG T 
Sbjct: 181 LSAAGLAELELEAAG-SVAKPVRADEAMFPNGLNLEIVTPLDASDSVSMRVIERGVGETR 239

Query: 224 ACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH------VFMTGEAKKEWE 276
           +CG+    A++ A     +T  AV+VK+ GG + ++ H  ++        +TG +     
Sbjct: 240 SCGTGTVAAAIAALADAGRTEGAVTVKVSGGVVTVDVHKASNADGAFSATLTGPSVIHTL 299

Query: 277 GKLDIKTG 284
           G ++++  
Sbjct: 300 GDIELEAL 307


>gi|315635549|ref|ZP_07890815.1| diaminopimelate epimerase [Arcobacter butzleri JV22]
 gi|315480307|gb|EFU70974.1| diaminopimelate epimerase [Arcobacter butzleri JV22]
          Length = 246

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 38/276 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + + K    GN  ++       D  T +AI   +  +    D  +++    ++  D    
Sbjct: 1   MTYTKYSASGNDFIISHSFIEKDYKT-EAIKLCNRTEGIGADGFVVLVP--NSEADFKWL 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS+   CGN  R V  +  +           + G  +                  
Sbjct: 58  FYNSDGSDASMCGNATRAVTHYAYTNGLITRNQARFLTGAGI------------------ 99

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLAS 182
               I      D ++        +N  F  + F   +V  G PH +  V+ DL  Y+   
Sbjct: 100 ----IKAVVENDIVETQLTKAKVINEEFSEDGFIWHLVDTGVPHLVTIVD-DLNLYNHEL 154

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241
              +      +    N++ A++ +  ++ +RT+ERGV   T ACG+   AS + +  L  
Sbjct: 155 CAKM-----RYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKL 208

Query: 242 TNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276
            N    V    G  L +    +N ++  G  KK + 
Sbjct: 209 VNDTTFVYPKSGEELTLSIK-DNTIYFKGAVKKVFT 243


>gi|298736257|ref|YP_003728783.1| Diaminopimelate epimerase [Helicobacter pylori B8]
 gi|298355447|emb|CBI66319.1| Diaminopimelate epimerase [Helicobacter pylori B8]
          Length = 273

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKR-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F    +              ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP  R  +    D           +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIPALRCKNFFSSDSVL------EHISTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|313681232|ref|YP_004058970.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994]
 gi|313154092|gb|ADR32770.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994]
          Length = 249

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 34/278 (12%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+  AK    GN  ++       D  +  A       +    D ++++   +    D   
Sbjct: 1   MLQIAKYCASGNDFVIFHAFEKADR-SQLARILCDRQNGIGADGLIVLVPHES--HDFEW 57

Query: 65  RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
              N DGS    CGNG R    +     +   S  F T  G++ A       +  D+  P
Sbjct: 58  EFYNADGSTASMCGNGSRACAHYAHRFGLAPSSMAFLTGAGVIKAHVEG-DMVQSDLTPP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           ++  + I                           +++  G PH I F        D+  F
Sbjct: 117 VIVNQEI--------------------VESGMKWWLIDTGVPHLITF------DADIEHF 150

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242
              LA+        N++IA +    +L +RT+ERGV   T ACG+   AS   +      
Sbjct: 151 NIDLARTLRHRYNANVNIASINLDGTLRVRTYERGVEDETLACGTGMAASFYRAVQERLV 210

Query: 243 NRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    V    G  L + + +   +   GE K  +E   
Sbjct: 211 DENTKVFPKSGETLYLGFEE-GVITFKGEVKGVFETTW 247


>gi|229547649|ref|ZP_04436374.1| diaminopimelate epimerase [Enterococcus faecalis TX1322]
 gi|256852437|ref|ZP_05557813.1| diaminopimelate epimerase [Enterococcus faecalis T8]
 gi|229307141|gb|EEN73128.1| diaminopimelate epimerase [Enterococcus faecalis TX1322]
 gi|256712291|gb|EEU27323.1| diaminopimelate epimerase [Enterococcus faecalis T8]
 gi|315028527|gb|EFT40459.1| diaminopimelate epimerase [Enterococcus faecalis TX4000]
          Length = 326

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEKITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|257415181|ref|ZP_05592175.1| diaminopimelate epimerase [Enterococcus faecalis AR01/DG]
 gi|257157009|gb|EEU86969.1| diaminopimelate epimerase [Enterococcus faecalis ARO1/DG]
          Length = 326

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPSLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +     +    ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1]
 gi|122955072|sp|Q0S1N7|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1]
          Length = 289

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 30/293 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           +DF+K  G  N  +V+       ++++  + AL         D I+ +            
Sbjct: 1   MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAGAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  +  D F+   N DGS  + CGNG+R    +L +         E+    +V   
Sbjct: 61  AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRAAG------LESRDEFVVGSR 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168
                + V   +       + +      + RD           + N   + +GNPH   +
Sbjct: 115 AGGKPVIVHSADGAFGEVTVDMG-----VVRDLGTSAATIDGKVFNGIGIDVGNPHLACV 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                      L            F  GVN+ I       ++D+R  ERGVG T +CG+ 
Sbjct: 170 DAHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSCGTG 229

Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             A+  A+      +   V+V++ GG + +         + G +     G LD
Sbjct: 230 TVAAATAALRFDGADSGEVNVRIPGGQVTVAVS-GGRATLRGPSVLVASGTLD 281


>gi|307637249|gb|ADN79699.1| Diaminopimelate epimerase [Helicobacter pylori 908]
 gi|325995841|gb|ADZ51246.1| Diaminopimelate epimerase [Helicobacter pylori 2018]
 gi|325997435|gb|ADZ49643.1| Diaminopimelate epimerase [Helicobacter pylori 2017]
          Length = 273

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLIAQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYEIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   ++++ G PH + FV+       L S   L 
Sbjct: 120 DTIP------NLRCKKFFSNDSVLENIPMFYLINTGVPHLVGFVK---NKGLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   H T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G A+  
Sbjct: 231 TLIPKSNEFLELSLK-NDEIFYKGVARYI 258


>gi|229548389|ref|ZP_04437114.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200]
 gi|255971017|ref|ZP_05421603.1| diaminopimelate epimerase [Enterococcus faecalis T1]
 gi|257088960|ref|ZP_05583321.1| diaminopimelate epimerase [Enterococcus faecalis CH188]
 gi|257420743|ref|ZP_05597733.1| diaminopimelate epimerase [Enterococcus faecalis X98]
 gi|312904838|ref|ZP_07763978.1| diaminopimelate epimerase [Enterococcus faecalis TX0635]
 gi|229306605|gb|EEN72601.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200]
 gi|255962035|gb|EET94511.1| diaminopimelate epimerase [Enterococcus faecalis T1]
 gi|256997772|gb|EEU84292.1| diaminopimelate epimerase [Enterococcus faecalis CH188]
 gi|257162567|gb|EEU92527.1| diaminopimelate epimerase [Enterococcus faecalis X98]
 gi|310631844|gb|EFQ15127.1| diaminopimelate epimerase [Enterococcus faecalis TX0635]
 gi|315155010|gb|EFT99026.1| diaminopimelate epimerase [Enterococcus faecalis TX0043]
 gi|315158773|gb|EFU02790.1| diaminopimelate epimerase [Enterococcus faecalis TX0312]
 gi|315161030|gb|EFU05047.1| diaminopimelate epimerase [Enterococcus faecalis TX0645]
 gi|315576506|gb|EFU88697.1| diaminopimelate epimerase [Enterococcus faecalis TX0630]
          Length = 326

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPSLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4]
 gi|254767119|sp|C1B393|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4]
          Length = 289

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 30/293 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           +DF+K  G  N  +V+       ++++  + AL         D I+ +            
Sbjct: 1   MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAAAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  +  D F+   N DGS  + CGNG+R    +L S         ET    +V   
Sbjct: 61  AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRSTG------LETRDEFVVGSR 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168
                + V   +       + +      + RD           + N   + +GNPH   +
Sbjct: 115 AGGKPVIVHSADGSAGEVTVDMG-----VVRDLGTSAATIDGKVFNGIGIDVGNPHLACV 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                      L            F  GVN+ I       ++D+R  ERGVG T +CG+ 
Sbjct: 170 DAHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSCGTG 229

Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             A+  A+      +   V V++ GG + +         + G +     G LD
Sbjct: 230 TVAAATAALRFDGADSGEVKVRIPGGQVTVALS-GGRATLRGPSVLVASGNLD 281


>gi|152989854|ref|YP_001355576.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2]
 gi|166225739|sp|A6Q160|DAPF_NITSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|151421715|dbj|BAF69219.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2]
          Length = 250

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 108/284 (38%), Gaps = 37/284 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K    GN  ++       D  +  A       +    D ++++     +  D   +
Sbjct: 1   MQLVKYSASGNDFVIYHTFVKKDR-SELAKLLCHRHEGIGADGLIVLLPH--SRYDFEWQ 57

Query: 66  IINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGSE + CGNG R    +  +  +  K   F T+ G++ A       +   + +P 
Sbjct: 58  FYNADGSEAEMCGNGSRAAAHYAYSYGLASKQMRFLTLAGVIEASVEA-DVVESQLTKPK 116

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +  + I                        +  +++  G PH + FVED      L  F 
Sbjct: 117 ILDRKI--------------------EENGKRWWLIDTGVPHLVTFVED------LNQFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
              +K        N++   +  LE++ +RT+ERGV   T ACG+   A+ + +      N
Sbjct: 151 KNESKRLRNKYNANVNYGIIRDLENVGVRTYERGVEDETLACGTGMAATFLRAFEEGVVN 210

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
             V+V    G  L + + +N  +F  G  KK +E     K G W
Sbjct: 211 PTVTVVPKSGEELQLRY-ENEKLFFKGRVKKVFE---TFKEGIW 250


>gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104]
 gi|166225731|sp|A0QIQ8|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104]
          Length = 294

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 108/303 (35%), Gaps = 27/303 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +++        +T+  + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVLLCDTPAELRLTAAGVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  D ++   N DGS  Q CGNG+R    +L +         ET    +V   
Sbjct: 61  DRLPDGVAGDDWYMDYRNSDGSVAQMCGNGVRVFAHYLRASG------LETRDEFVVGSL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                ++V   +       + + ++       +     V         V       A   
Sbjct: 115 AGPRPVTVHAADATGADVSVDMGKANTLGSGGKAFEATVGGRRFAGLAVDVGNPHLACLD 174

Query: 171 VEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            E  +           ++     F +GVN+ +    +   + +R  ERGVG T +CG+  
Sbjct: 175 PELSVDELAALDVAAPVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGTGT 234

Query: 230 CASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
            A+ VA+      +   ++V++ GG +++   D    ++ G +     G++   + +W +
Sbjct: 235 VAAAVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEWWQ 290

Query: 289 KNE 291
           + +
Sbjct: 291 QAQ 293


>gi|257083545|ref|ZP_05577906.1| diaminopimelate epimerase [Enterococcus faecalis Fly1]
 gi|256991575|gb|EEU78877.1| diaminopimelate epimerase [Enterococcus faecalis Fly1]
          Length = 326

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +     +    ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|256957635|ref|ZP_05561806.1| diaminopimelate epimerase [Enterococcus faecalis DS5]
 gi|257080128|ref|ZP_05574489.1| diaminopimelate epimerase [Enterococcus faecalis JH1]
 gi|294780698|ref|ZP_06746059.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1]
 gi|307268574|ref|ZP_07549946.1| diaminopimelate epimerase [Enterococcus faecalis TX4248]
 gi|256948131|gb|EEU64763.1| diaminopimelate epimerase [Enterococcus faecalis DS5]
 gi|256988158|gb|EEU75460.1| diaminopimelate epimerase [Enterococcus faecalis JH1]
 gi|294452308|gb|EFG20749.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1]
 gi|306515063|gb|EFM83606.1| diaminopimelate epimerase [Enterococcus faecalis TX4248]
 gi|315032252|gb|EFT44184.1| diaminopimelate epimerase [Enterococcus faecalis TX0017]
 gi|315035538|gb|EFT47470.1| diaminopimelate epimerase [Enterococcus faecalis TX0027]
 gi|329575057|gb|EGG56609.1| diaminopimelate epimerase [Enterococcus faecalis TX1467]
          Length = 326

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   V     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEVLGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|257085818|ref|ZP_05580179.1| diaminopimelate epimerase [Enterococcus faecalis D6]
 gi|256993848|gb|EEU81150.1| diaminopimelate epimerase [Enterococcus faecalis D6]
 gi|315026272|gb|EFT38204.1| diaminopimelate epimerase [Enterococcus faecalis TX2137]
 gi|315149443|gb|EFT93459.1| diaminopimelate epimerase [Enterococcus faecalis TX0012]
          Length = 326

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L+ + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|294791045|ref|ZP_06756203.1| diaminopimelate epimerase [Scardovia inopinata F0304]
 gi|294458942|gb|EFG27295.1| diaminopimelate epimerase [Scardovia inopinata F0304]
          Length = 342

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/318 (21%), Positives = 123/318 (38%), Gaps = 35/318 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIHDFQD 57
           M+   K++G GN   ++D          + ++  A+             D I+ +     
Sbjct: 1   MITLEKVQGSGNSFFLLDQDLLPSALNENELSRLALALCPRKTGLTGGADGILAVTASPT 60

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRD 113
            S    I +IN DGS+   CGNG+R V R+L          K  T +    +     N  
Sbjct: 61  PS----IHVINADGSQASMCGNGLRTVARYLHDHYGFGQEGKRDTIDGSFHVSTLNANLQ 116

Query: 114 GSISVDMGE--PILDWKLIPLARSFDKMD------RDRFHIGPVNHLFLRNPFVVSMGNP 165
                +     P    ++ P++     +           +      L       +S+ NP
Sbjct: 117 VRSVGNFAPGLPAYSVEISPVSFDSRSLPFTNLGRNRLINCSVPELLPDLRFTALSVPNP 176

Query: 166 HAIFFVEDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
           H + F+  D    DL S     L + +P F  GVN++ A +    +L +RT+ERGVGLT 
Sbjct: 177 HVVSFMTQDQVQSDLLSSLGNRLNSPNPYFPNGVNVNFAHILGRNTLYVRTFERGVGLTN 236

Query: 224 ACGSAACASVVASGC----LHKTNRAVSVKMLGGGLL--IEWHDNN---HVFMTGEAKKE 274
           ACG+   A+ +        + + N+ ++V   GG +   + + +      + + G A   
Sbjct: 237 ACGTGMSAASLCLVLTHPQMGEANQEITVYNPGGMVKTRVHYQEEEGTYTINLIGNATVT 296

Query: 275 WEGKLDIKTGKWIKKNED 292
              +LD ++  +    + 
Sbjct: 297 HLIELD-ESCLYHPPAQG 313


>gi|149194724|ref|ZP_01871819.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2]
 gi|149135147|gb|EDM23628.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2]
          Length = 241

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 39/269 (14%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  ++       D  ++ A       +    D ++++   +  + D   +  N 
Sbjct: 5   KYSASGNDFVIFHTFKKKDR-SNLAKKLCDRFNGIGADGLIVLLPHK--TYDFEWQFYNA 61

Query: 70  DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129
           DGSE   CGNG R        +    S   + + G  V +   DG I      P  +   
Sbjct: 62  DGSEASMCGNGSRAAA-LYAYKYDLASSKMKFLTGAGVIEAEVDGDIVETQLTPYKELGK 120

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
                                        +   G PH +   +  L ++++     L   
Sbjct: 121 ------------------------FDEWELFDTGVPHLVKLDK--LENFNINECREL--- 151

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248
              +    N++IA V     L +RT+ERGV   T ACG+  CAS + +        ++ V
Sbjct: 152 --RYKHNANVNIAEVKD-NKLFVRTYERGVEDETLACGTGMCASFLKARKEGLIGDSIKV 208

Query: 249 KMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276
                  L I    N  ++  G  K+ ++
Sbjct: 209 YPKSKEELEISLKRN-RLYFKGRVKETFK 236


>gi|256959657|ref|ZP_05563828.1| diaminopimelate epimerase [Enterococcus faecalis Merz96]
 gi|293384849|ref|ZP_06630692.1| diaminopimelate epimerase [Enterococcus faecalis R712]
 gi|293389139|ref|ZP_06633606.1| diaminopimelate epimerase [Enterococcus faecalis S613]
 gi|312908147|ref|ZP_07767125.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512]
 gi|312979083|ref|ZP_07790798.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516]
 gi|256950153|gb|EEU66785.1| diaminopimelate epimerase [Enterococcus faecalis Merz96]
 gi|291077853|gb|EFE15217.1| diaminopimelate epimerase [Enterococcus faecalis R712]
 gi|291081510|gb|EFE18473.1| diaminopimelate epimerase [Enterococcus faecalis S613]
 gi|310625855|gb|EFQ09138.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512]
 gi|311288117|gb|EFQ66673.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516]
          Length = 326

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +     +    ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|227519126|ref|ZP_03949175.1| diaminopimelate epimerase [Enterococcus faecalis TX0104]
 gi|256761385|ref|ZP_05501965.1| diaminopimelate epimerase [Enterococcus faecalis T3]
 gi|257080861|ref|ZP_05575222.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol]
 gi|257418236|ref|ZP_05595230.1| diaminopimelate epimerase [Enterococcus faecalis T11]
 gi|312952100|ref|ZP_07770981.1| diaminopimelate epimerase [Enterococcus faecalis TX0102]
 gi|227073474|gb|EEI11437.1| diaminopimelate epimerase [Enterococcus faecalis TX0104]
 gi|256682636|gb|EEU22331.1| diaminopimelate epimerase [Enterococcus faecalis T3]
 gi|256988891|gb|EEU76193.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol]
 gi|257160064|gb|EEU90024.1| diaminopimelate epimerase [Enterococcus faecalis T11]
 gi|295114168|emb|CBL32805.1| diaminopimelate epimerase [Enterococcus sp. 7L76]
 gi|310629882|gb|EFQ13165.1| diaminopimelate epimerase [Enterococcus faecalis TX0102]
 gi|315153948|gb|EFT97964.1| diaminopimelate epimerase [Enterococcus faecalis TX0031]
 gi|315166228|gb|EFU10245.1| diaminopimelate epimerase [Enterococcus faecalis TX1302]
 gi|315170817|gb|EFU14834.1| diaminopimelate epimerase [Enterococcus faecalis TX1342]
 gi|327534202|gb|AEA93036.1| diaminopimelate epimerase [Enterococcus faecalis OG1RF]
          Length = 326

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|256963232|ref|ZP_05567403.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704]
 gi|300861745|ref|ZP_07107825.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11]
 gi|307272274|ref|ZP_07553534.1| diaminopimelate epimerase [Enterococcus faecalis TX0855]
 gi|312900206|ref|ZP_07759518.1| diaminopimelate epimerase [Enterococcus faecalis TX0470]
 gi|256953728|gb|EEU70360.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704]
 gi|300848270|gb|EFK76027.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11]
 gi|306511163|gb|EFM80173.1| diaminopimelate epimerase [Enterococcus faecalis TX0855]
 gi|311292567|gb|EFQ71123.1| diaminopimelate epimerase [Enterococcus faecalis TX0470]
 gi|315167722|gb|EFU11739.1| diaminopimelate epimerase [Enterococcus faecalis TX1341]
 gi|323479602|gb|ADX79041.1| diaminopimelate epimerase [Enterococcus faecalis 62]
          Length = 326

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|208434486|ref|YP_002266152.1| diaminopimelate epimerase [Helicobacter pylori G27]
 gi|229807495|sp|B5Z6T7|DAPF_HELPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|208432415|gb|ACI27286.1| diaminopimelate epimerase [Helicobacter pylori G27]
          Length = 272

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALRCKKFFTNDSVLENILTFYLIDTGVPHLVGFVK---NKKLLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + E++ L+T+ERGV   T ACG+   A  +AS   + T +  
Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASHIFYNTPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
            +       L +   ++  +F  G  +  
Sbjct: 231 ILIPKSNESLELSLKNDG-IFYKGAVRYI 258


>gi|283458472|ref|YP_003363098.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18]
 gi|283134513|dbj|BAI65278.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18]
          Length = 311

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 100/296 (33%), Gaps = 33/296 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54
            K  G GN  + +        +T + +  A         D  +             LI  
Sbjct: 17  TKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKLIE- 75

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +      F+   N DGS  + CGNG+R  V +L +    +    ET++    A      
Sbjct: 76  -EHPDAVWFMDYRNGDGSVAEMCGNGVRAFVEYLRTEGLIELEVGETVKIGTRAGVKTVA 134

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                    +  W  I       +   +   +        R    +SMGNPH +  +  +
Sbjct: 135 RTEEGYAIDMGPWSFI--HGDAAREGGEDCLVSARGLKTPRAGLSISMGNPHTVVMLGSE 192

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--------LDLRTWERGVGLTAACG 226
                L    +L   +P    G N+       L+         + +R  ERGVG T +CG
Sbjct: 193 GKLDGLD-LHSLPQVNPAPVNGTNVEFVVPVDLDVESGAHVGAIRMRVHERGVGETLSCG 251

Query: 227 SAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWE 276
           + ACA+  A+      +      V + GG L + +     D  HV + G A+    
Sbjct: 252 TGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQMVAT 307


>gi|256617382|ref|ZP_05474228.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200]
 gi|307275562|ref|ZP_07556703.1| diaminopimelate epimerase [Enterococcus faecalis TX2134]
 gi|307290622|ref|ZP_07570530.1| diaminopimelate epimerase [Enterococcus faecalis TX0411]
 gi|256596909|gb|EEU16085.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200]
 gi|306498336|gb|EFM67845.1| diaminopimelate epimerase [Enterococcus faecalis TX0411]
 gi|306507667|gb|EFM76796.1| diaminopimelate epimerase [Enterococcus faecalis TX2134]
 gi|315143988|gb|EFT88004.1| diaminopimelate epimerase [Enterococcus faecalis TX2141]
          Length = 326

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPSLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  ++  +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDDSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|23012042|ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 173

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/170 (47%), Positives = 102/170 (60%), Gaps = 2/170 (1%)

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            V MG+P L W  IPLA  F    R    +GP++   L +P  VSMGNPHAIFFVE D  
Sbjct: 1   HVYMGQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPD 60

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
            YDL   G LL  HP+F E  N+SIA+VT  +++ LR WERG GLT ACG+AACA+ VA+
Sbjct: 61  TYDLGRIGPLLEAHPIFPERANISIAQVTGRDTIKLRVWERGAGLTLACGTAACATAVAA 120

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284
             L    R+  + + GG L IEW  ++HV MTG    E EG    ++  G
Sbjct: 121 SRLRLIGRSARIALPGGELAIEWRADDHVLMTGPVFLEGEGSFAPELFAG 170


>gi|315173875|gb|EFU17892.1| diaminopimelate epimerase [Enterococcus faecalis TX1346]
          Length = 326

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L+ + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATVTHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|307288825|ref|ZP_07568803.1| diaminopimelate epimerase [Enterococcus faecalis TX0109]
 gi|306500294|gb|EFM69633.1| diaminopimelate epimerase [Enterococcus faecalis TX0109]
          Length = 326

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHW 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|29375095|ref|NP_814248.1| diaminopimelate epimerase [Enterococcus faecalis V583]
 gi|227553830|ref|ZP_03983879.1| diaminopimelate epimerase [Enterococcus faecalis HH22]
 gi|81585476|sp|Q838I3|DAPF_ENTFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|29342554|gb|AAO80319.1| diaminopimelate epimerase [Enterococcus faecalis V583]
 gi|227177083|gb|EEI58055.1| diaminopimelate epimerase [Enterococcus faecalis HH22]
 gi|315574927|gb|EFU87118.1| diaminopimelate epimerase [Enterococcus faecalis TX0309B]
 gi|315582374|gb|EFU94565.1| diaminopimelate epimerase [Enterococcus faecalis TX0309A]
          Length = 326

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNTGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|210134767|ref|YP_002301206.1| diaminopimelate epimerase [Helicobacter pylori P12]
 gi|229807494|sp|B6JLE8|DAPF_HELP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|210132735|gb|ACJ07726.1| diaminopimelate epimerase [Helicobacter pylori P12]
          Length = 272

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVIVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------NLRCKKFFTNNSVLENILTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + E++ L+T+ERGV   T ACG+   A  +A+   +   +  
Sbjct: 171 LRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNAPKKA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +   ++  +F  G  +  
Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGIVRYI 258


>gi|293375092|ref|ZP_06621382.1| diaminopimelate epimerase [Turicibacter sanguinis PC909]
 gi|292646286|gb|EFF64306.1| diaminopimelate epimerase [Turicibacter sanguinis PC909]
          Length = 277

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 14/276 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+  +GN  L+I++        + +  A+           D I+++     A  D  +
Sbjct: 6   FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS  ++CGNG+R + R+L    +             ++    D  +        
Sbjct: 64  MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKDVITVDLGLA 123

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                 P      K D  ++         +    ++SMGNPH I + ++D + +      
Sbjct: 124 HMLTE-PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTFYEEMGR 182

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT-- 242
                       VN+ +  V +   L L T+ERG G T ACG+   A+V ++    +   
Sbjct: 183 LSKRY------DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQVLP 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           N  + V + GG L ++W  N+H+  +G+  K   G 
Sbjct: 237 NEIIKVYLPGGILEVKWDLNDHLLASGKTTKVCCGT 272


>gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 278

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 93/275 (33%), Gaps = 20/275 (7%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV----DAFI 64
           K  G  N  +++         T + + AL         D ++ +   +D +     D F+
Sbjct: 13  KGHGTENDFVILVDTDNCLAPTPEEVAALCDRHAGIGADGLLRVVRARDINASSAADWFM 72

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122
              N DGS  + CGNGMR    +L      K K F   T  G      +     + D+  
Sbjct: 73  DYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHAADERTADVSV 132

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
            + +  +  ++                   F      V   +   I           L  
Sbjct: 133 EMGEASVTGVS-----------TCVLGQTTFAGLGVDVGNPHLACIIPTLTKDQLEALPI 181

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHK 241
                     F  GVN+ IA      ++ +R  ERGVG T +CG+     +V A      
Sbjct: 182 QDGFAVDTEFFPAGVNVEIATELVDGAVYMRVNERGVGETRSCGTGTVATAVAALADAGL 241

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
            +  V+V +LGG + +    +    + G ++  + 
Sbjct: 242 ADGTVAVHVLGGTVQVTVK-DGKAALRGPSEIVFR 275


>gi|229820924|ref|YP_002882450.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333]
 gi|229566837|gb|ACQ80688.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333]
          Length = 309

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 99/299 (33%), Gaps = 34/299 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF-----------Q 56
            K  G GN  L++        +T   + ALS        D ++                +
Sbjct: 10  VKGHGTGNDFLLLADPEGALALTEADVAALSDRHRGLGADGVIRAVRSSAIADGASLLEE 69

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                 F+   N DGS  + CGNG+R  V FL +     +   + +     A        
Sbjct: 70  HPEAVWFMDYRNADGSLAEMCGNGIRVFVEFLRAEGLLDAEDGDVVPVATRAGVLPVRIE 129

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +      +  W     A + +        +  ++    R    +++ NPH +  +E D+ 
Sbjct: 130 TDRYAVDMGRWSAPGGAEALEAGFDASVGVAGLDSP--RPGLRLALPNPHVVVALE-DVA 186

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL-----------------DLRTWERGV 219
             +           P+   G N+ +      +                    +R  ERGV
Sbjct: 187 QLESIDLTKPPRVDPLGEGGTNVELVVALGEQRFDADGTPNAEGERVVGIVRMRVHERGV 246

Query: 220 GLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           G T +CG+ ACA+ +A              V + GG L +     +HV ++G A+    
Sbjct: 247 GETLSCGTGACAAALAVRAWAGAGAPDEWLVLVPGGQLQVRVLPEDHVELSGPAELVAR 305


>gi|325841298|ref|ZP_08167399.1| diaminopimelate epimerase [Turicibacter sp. HGF1]
 gi|325489979|gb|EGC92326.1| diaminopimelate epimerase [Turicibacter sp. HGF1]
          Length = 277

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 14/276 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           F K+  +GN  L+I++        + +  A+           D I+++     A  D  +
Sbjct: 6   FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            I N DGS  ++CGNG+R + R+L    +             ++    D  +        
Sbjct: 64  MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKDVITVDLGLA 123

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                 P      K D  ++         +    ++SMGNPH I + ++D + +      
Sbjct: 124 HMLTE-PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTFYEEMGR 182

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT-- 242
                       VN+ +  V +   L L T+ERG G T ACG+   A+V ++    +   
Sbjct: 183 LSKRY------DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQVLP 236

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           N  + V + GG L ++W  N+H+  +G+  K   G 
Sbjct: 237 NEIIKVYLPGGILEVKWDLNDHLLTSGKTTKVCCGT 272


>gi|300744002|ref|ZP_07073022.1| diaminopimelate epimerase [Rothia dentocariosa M567]
 gi|300380363|gb|EFJ76926.1| diaminopimelate epimerase [Rothia dentocariosa M567]
          Length = 312

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 106/300 (35%), Gaps = 34/300 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54
            K  G GN  + +        + +D I            D  +             L+ +
Sbjct: 17  TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNLLEE 76

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
             DA    F+   N DGS  + CGNG+R  V +L +         ET++           
Sbjct: 77  HPDAI--WFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVA 134

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                    +  W  I       +   +  H+     +  R    +SMGNPH +  +  +
Sbjct: 135 RTEEGYAIDMGPWSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQE 192

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGVGLTAAC 225
                L    +    +P   +G N+       LE+         + +R +ERGVG T +C
Sbjct: 193 GKLDGLD-LNSQPQVNPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGETLSC 251

Query: 226 GSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279
           G+ ACA+  A+      +      V + GG L + +     D  HV + G A+   + +L
Sbjct: 252 GTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQTVAKIEL 311


>gi|154174386|ref|YP_001407369.1| diaminopimelate epimerase [Campylobacter curvus 525.92]
 gi|112802366|gb|EAT99710.1| diaminopimelate epimerase [Campylobacter curvus 525.92]
          Length = 249

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 29/274 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
           +K    GN  ++       D  +  A       +    D ++++      + +      N
Sbjct: 4   SKYNANGNDFVIFHTFVSADR-SELAARLCDRYNGIGADGLIVL-KPDKDTNEIVWEFYN 61

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS    CGNG R   ++     +  +  F+ + G  +   N    +S D  E  L   
Sbjct: 62  SDGSHADMCGNGSRAAAQY-AVDNQLCTNVFDLVTGSGIVSVN----VSKDGVEVELTSP 116

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
            I   +  D               F +       G PH + FV  DL  +D+ +  +L  
Sbjct: 117 KILSNKPID--------------EFGKIWHFYDTGVPHLVSFVS-DLNEFDIQTCRDL-- 159

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247
               +    N+++A++ +  ++ +RT+ERGV   T ACG+   A    +      +R   
Sbjct: 160 ---RYKYNANVNLAKLEN-NTIYVRTYERGVENETLACGTGMAACFYGAVLNFNASRCCK 215

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           V    G  L    +N  +F  G+ K  ++  +D+
Sbjct: 216 VYPKSGDELGLRLENGKIFFKGKVKHCFDAYIDV 249


>gi|330792346|ref|XP_003284250.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum]
 gi|325085823|gb|EGC39223.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum]
          Length = 479

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 2/193 (1%)

Query: 89  TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148
               +  +              N      +           I         + + +    
Sbjct: 280 FQHPQYNNDLISYNNDQFEIDSNIFQQCPIFKLNQKNTIGKINNRILSTNSNYEDYSKMI 339

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE 208
                  N  +VSMGNPH +  +E ++  + L  +G ++  HP+F +  N+    V + +
Sbjct: 340 QCGGHFINSTLVSMGNPHCVLHLE-NVEEFPLDYYGKVIESHPIFPQKTNVEFVEVKNRD 398

Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFM 267
            L +R W+RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF+
Sbjct: 399 LLRVRVWQRGIGVTHSCGTGAAAALVSGVLRGKNNRKANVQMDGGTLEVEWREEDDRVFI 458

Query: 268 TGEAKKEWEGKLD 280
           +  A   ++G + 
Sbjct: 459 SCPAITVFQGTIK 471



 Score = 64.4 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 1   MQSSMVDFAKMEGIGNKILVI---------DMRGCHDNITSDAINA---LSTDDNTHFDQ 48
           + S +++F KM   G   +V          + +     +    I A      +     D 
Sbjct: 57  LSSIVLNFCKMHVRGQDFIVFHIDSLKYESNNQSFRPPVKGLQIIAQNLCDRESGVGADN 116

Query: 49  IMLIHDFQD---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM 92
           +++I         + D  + I N DGS  ++C  G+ CV +++    
Sbjct: 117 VLVITPPPTEQLENADFQLLIFNSDGSLAENCSTGVSCVCKYIIDYN 163


>gi|255973530|ref|ZP_05424116.1| diaminopimelate epimerase [Enterococcus faecalis T2]
 gi|307282800|ref|ZP_07563000.1| diaminopimelate epimerase [Enterococcus faecalis TX0860]
 gi|255966402|gb|EET97024.1| diaminopimelate epimerase [Enterococcus faecalis T2]
 gi|306503656|gb|EFM72887.1| diaminopimelate epimerase [Enterococcus faecalis TX0860]
          Length = 326

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 79/320 (24%), Positives = 132/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T + I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTVEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   IP+      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|154149336|ref|YP_001405720.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
 gi|153805345|gb|ABS52352.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
          Length = 272

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 92/288 (31%), Gaps = 41/288 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ--------- 56
           +  +K    GN  ++ +      N ++ A    +       D +++I   +         
Sbjct: 3   IKISKYNASGNDFVIFES-DSFHNYSNLARKICNRHKGIGADGLIVIIKNKSEISNKISS 61

Query: 57  ------DASVDAFIRIINCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAK 109
                 +  +D      N DGS+   CGNG R        +++  K+  F T  GI+ A+
Sbjct: 62  LILDLNNDKIDFAWDFYNSDGSKADMCGNGSRAAALFAYENKIANKNMKFLTGAGIINAE 121

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
                                      +                         G PH + 
Sbjct: 122 ICEINKHLAI----------------VESELTKPVKKAENFSENGFLWSFYDTGVPHLVT 165

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228
           FV+ DL  +++    NL           N++ A       L +RT+ERGV   T ACG+ 
Sbjct: 166 FVK-DLNDFNIEVARNL-----RKKYNANVNFASFKDE-ILRVRTYERGVEDETLACGTG 218

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             A  +           V V    G +L    +++ VF  G     ++
Sbjct: 219 MAACFITGVINFNLQNVVKVMPKSGEILYLRKNDDKVFFKGAVSHSFD 266


>gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81571142|sp|Q73W21|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 294

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 101/303 (33%), Gaps = 27/303 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52
           + FAK  G  N  +++        +T   + AL         D ++ +            
Sbjct: 1   MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL 60

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  D ++   N DGS  Q CGNG+R    +L +         ET    +V   
Sbjct: 61  DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASG------LETRDEFVVGSL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                ++V   +       + + ++             V         V       A   
Sbjct: 115 AGPRPVTVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAGLAVDVGNPHLACLD 174

Query: 171 VEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-GSA 228
            E  +           ++     F +GVN+ +    +   + +R  ERGVG T +C    
Sbjct: 175 PELSVDELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGT 234

Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288
             A V A          ++V++ GG +++   D    ++ G +     G++   + +W +
Sbjct: 235 VAAVVAALAAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEWWQ 290

Query: 289 KNE 291
           + +
Sbjct: 291 QAQ 293


>gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN]
 gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923]
 gi|1169226|sp|P46814|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|254767117|sp|B8ZQU1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae]
 gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae]
 gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923]
          Length = 296

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 108/303 (35%), Gaps = 34/303 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI----------- 52
           M+ FAK  G  N  +V+         T+  + AL         D ++ +           
Sbjct: 1   MI-FAKGHGTQNDFVVLPDVEADVTFTAAQVAALCNRRQGLGADGVLRVTTAGAAVTAGV 59

Query: 53  ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV 107
                   +  D ++   N DGS  Q CGNG+R    +L +        F   ++ G  +
Sbjct: 60  LEHLPDGVSCSDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRL 119

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH- 166
              +    ++ D+   +            + +                +   V +GNPH 
Sbjct: 120 VNVHHVDELNADVTVDM---------GKANLLGSGGPAFAVTVGGRRFSGVAVDVGNPHL 170

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           A    +  L        G  +    + F +GVN+ +        + +R  ERGVG T +C
Sbjct: 171 ACMDPQLSLEELAALDLGAPVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVGETRSC 230

Query: 226 GSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
           G+   A+ VA+      +   ++V++ GG ++I   D    ++ G +     G+L     
Sbjct: 231 GTGTVAAAVAALASAGADTGTLTVRVPGGDVVITITDVTS-YLRGPSVLVAHGEL---AD 286

Query: 285 KWI 287
            W 
Sbjct: 287 AWW 289


>gi|224418877|ref|ZP_03656883.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|253827831|ref|ZP_04870716.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|313142394|ref|ZP_07804587.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|253511237|gb|EES89896.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
 gi|313131425|gb|EFR49042.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491]
          Length = 248

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 87/271 (32%), Gaps = 31/271 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F+K    GN  +++      +N  S+    +    +    D ++++        D     
Sbjct: 3   FSKYSASGNDFILMHTFRYKENSYSELAKKICHRQEGIGADGLIILKPH--LEYDFEWEF 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  + CGNG R    +               +  ++            + +  + 
Sbjct: 61  YNADGSVAEMCGNGSRAAAMYARDLGLAGERQKFLSKAGVIGVSIEGNWAESALSKADIL 120

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            K I                      F    ++++ G PH +        + +LA     
Sbjct: 121 QKEI--------------------SEFGVKWWLLNTGVPHLVC------ENANLAFLNKE 154

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
             +        N++IA +     +  RT+ERGV   T ACG+   A       L K +  
Sbjct: 155 DLRFLRHKYNANINIASLQD-NRVLARTFERGVEDETLACGTGMAAMFYYLFLLGKVSNP 213

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
                  G  L    D   +++ GE +K  +
Sbjct: 214 CLFNPASGEDLYLREDKGTLYLKGEVRKICD 244


>gi|312868983|ref|ZP_07729161.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3]
 gi|311095486|gb|EFQ53752.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3]
          Length = 335

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 137/322 (42%), Gaps = 44/322 (13%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI--------------M 50
           M    K+ G  N   ++D       +T D +  L+        Q+              +
Sbjct: 2   MTQLLKVHGSQNSFFILDQTKLKQALTDDELRRLAR-------QLTDPQDGLLGGADGLL 54

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           ++         A +R+IN DGSE   CGNG+R V R++  R  + +F  +T+   L  ++
Sbjct: 55  VVDRPTRPGATAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLRVRQ 114

Query: 111 NRDGSISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGN 164
             +    +  G P    ++ P+     A  FD +  DR    PV  L        +++ N
Sbjct: 115 AGE----LAPGVPAFAVEISPVRFNRAALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPN 170

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH I FV  + +    L   G+     +P FS+GVN++ A++   + L +RT+ERGVG T
Sbjct: 171 PHLISFVNQETIEGPLLGELGSYLNGANPYFSDGVNVNFAQILGPQKLFVRTYERGVGFT 230

Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEW 275
            ACG+   A+ +A   LH      + AV+V   GG +    H  +H   + + G A   +
Sbjct: 231 NACGTGMSATSLAFALLHPASAAFDEAVTVYNPGGMVKTSVHFADHRYWIELIGNAT--F 288

Query: 276 EGKLDIKTGKWIKK--NEDDEA 295
             +L+I      +      D  
Sbjct: 289 THQLEIAEDLLHQGRVTAHDAQ 310


>gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
 gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
          Length = 425

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 7/180 (3%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59
               + F K +G+GN  +++D R          +A+     +     D ++ +    +  
Sbjct: 85  SERALHFVKYQGLGNDFILVDNRDSWVPKVTPEEAVKLCDRNFGIGADGVIFVMPGVN-G 143

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116
            D  I+I N DGSE + CGNG+RC  RF   + +     SFT  T  G ++ +   DG +
Sbjct: 144 ADYNIKIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQV 203

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            VDM E I     IP        ++       V      +   VSMG       V+  + 
Sbjct: 204 KVDMDEHIPSGPDIPTKL-LATKNKAVVQAKLVVEGLPWHVTCVSMGVTFGAKEVKVKVD 262


>gi|157163987|ref|YP_001465937.1| diaminopimelate epimerase [Campylobacter concisus 13826]
 gi|112801819|gb|EAT99163.1| diaminopimelate epimerase [Campylobacter concisus 13826]
          Length = 247

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  +K    GN  ++       D  +  A    S  +    D ++++  ++         
Sbjct: 1   MQVSKYNASGNDFVIFHTFLSKDR-SELARQICSRTNGVGADGLIVLLPYEKG---VKWE 56

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             N DGS    CGNG R   R+        S  F  + G          S+  +  E +L
Sbjct: 57  FYNSDGSYAAMCGNGSRAAARYAYLNGLVSSSEFALLTGSGEV----MASVKDECVEVVL 112

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               I L+   +                 +  +    G PH + F + +L  +D+     
Sbjct: 113 TSPKI-LSEPLN--------------EGGKTWYFYDTGVPHLVNFTQ-NLDEFDVKECRV 156

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
           L           N+++A+      L +RT+ERGV   T ACG+   A    +       +
Sbjct: 157 L-----RQKYNANVNLAKF-DGGVLKVRTYERGVEDETLACGTGMAACFYGATLNLNAAQ 210

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            + V    G  L    +N  +  +G  K  ++  ++I
Sbjct: 211 CLKVYPKSGEELGLRLENGKILFSGAVKHCFDTSIEI 247


>gi|315927477|gb|EFV06815.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 214

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 32/238 (13%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++ +     ++ ++ A    +  +    D  ++I   +    D    
Sbjct: 1   MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    F     K   + +F T  GI+ AK N+            
Sbjct: 58  FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + ++    K  ++ F          +   + + G PH + F +      +L  F 
Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241
            +L +        N++  ++     L +RT+ERGV   T ACG+   A    +    K
Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKK 208


>gi|319955792|ref|YP_004167055.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511]
 gi|319418196|gb|ADV45306.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511]
          Length = 255

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/279 (22%), Positives = 92/279 (32%), Gaps = 36/279 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68
            K    GN  ++       D     A            D ++++     A  D      N
Sbjct: 4   TKYNANGNDFVIFHDNQKRDRH-ELAKLLCDRHKGVGADGMVVLIPH--AEYDFEWEFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEPILDW 127
            DGSE   CGN  R V  +   +    +   E + G  V     +G  +  DM EP +  
Sbjct: 61  SDGSEATMCGNATRAVAHYAVEKGISVNDRAEFLTGAGVITAEVNGLYVVTDMLEPKILR 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           + I                           +++  G PH +  VE DL ++DL     L 
Sbjct: 121 RDI--------------------EEEGLQWWLIDTGVPHLVAEVE-DLENFDLEMARRLR 159

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246
            K+               + + L LRT+ERGV   T ACG+   A  V +    K     
Sbjct: 160 EKYDANVNIYT------VAEDELRLRTYERGVEGETLACGTGMTACYVRAREEGKARDLC 213

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEA--KKEWEGKLDIK 282
            V    G  L +E+ +       G+       E  LDI 
Sbjct: 214 IVFPRSGDELYLEYKE-GRYRFGGKVDKTFVAELTLDIP 251


>gi|300933037|ref|ZP_07148293.1| diaminopimelate epimerase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 102/306 (33%), Gaps = 35/306 (11%)

Query: 2   QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH------- 53
            + M  F K  G  N  + I       ++  D +  ++        D ++ +        
Sbjct: 16  SAGMTRFIKAHGTQNDFVFIVDPTVTVDLNEDRVRRIADRHAGIGGDGVIRVATAASLID 75

Query: 54  -----------DFQDASV-----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF 97
                      D ++        + F+   N DGS  + CGNG+R     L +       
Sbjct: 76  ANVLDPNILQPDPENPRATIHEDEWFMDYRNADGSIAEMCGNGVRAFAHVLIAEKLIGGG 135

Query: 98  TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157
             +    I V        + +   +       + + R                  F    
Sbjct: 136 EPKFPIEIGVGTRAGRKIVKIHEADAQQAKVSVDMGRPV-----VTGMSTASIGGFNLAG 190

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRT 214
             V MGNPH    +  +L    LA              F  GVN+ +A      ++ +R 
Sbjct: 191 LGVDMGNPHLAAII-PNLTAEKLAELPIGEKVTWDEEFFPTGVNVEVATPLEDGAVHMRV 249

Query: 215 WERGVGLTAACGSA-ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
            ERGVG T +CG+     +V A     K    V V++ GG + ++   +  V +TG ++ 
Sbjct: 250 HERGVGETRSCGTGTVATAVAALADAGKEFGTVVVRVPGGEVEVDITADTAV-LTGPSQI 308

Query: 274 EWEGKL 279
              G++
Sbjct: 309 VARGEM 314


>gi|290988396|ref|XP_002676907.1| predicted protein [Naegleria gruberi]
 gi|284090512|gb|EFC44163.1| predicted protein [Naegleria gruberi]
          Length = 408

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 107/384 (27%), Gaps = 107/384 (27%)

Query: 6   VDFAKMEGIGNKILVIDM---------------RGCHDNITSDAINALSTD-DNTHFDQI 49
           + F KM G+GN  + I+                     N+    I  L         D +
Sbjct: 22  ITFCKMHGLGNDYIYINCCNLLHSSEANDFRIYLNHQHNLIEYCIQKLCHRTFGIGADGV 81

Query: 50  MLIHDFQ----------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRK 95
           + I +               +   + + N DGS  + CGNG+RCV +F   R     K K
Sbjct: 82  IFITNPTPELLENETNHHQIIHCQMEMYNSDGSSGEMCGNGLRCVAQFACDRLVESGKIK 141

Query: 96  SFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIG---- 147
             T E  +         +        +   +     K  PL    +  +     +     
Sbjct: 142 KQTLEGGQLGYRINVQSNRGKRLYQCICYEDRSTFSKSSPLMVEIEMGNLQTKSVNFSFE 201

Query: 148 -----------------------------PVNHLFLRNPFVVSM----GNPHAIFFVEDD 174
                                        P+  L + NP  +       + + I      
Sbjct: 202 NNSNSIEYVEQEENSIRKIIFKQYLDCEIPLYCLLVPNPHAICWVNEISSQNEIDNTMKA 261

Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLR-------------------T 214
           +  + L + G ++     +F    N+      S + ++                     T
Sbjct: 262 VDSFPLHTIGPIIENLKQLFPNRTNVEFIETISAQHIETNDSPLIKSLKSNCILSARQRT 321

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNR---------AVSVKMLGGGLLIEWHDNNH- 264
           WERG G T ACG+ A A        +              V + + GG L   +H +N  
Sbjct: 322 WERGSGETNACGTGAFAVSQVLYLRNAITNSIGNIPNTATVRISLNGGDLWFRYHKSNPT 381

Query: 265 ------VFMTGEAKKEWEGKLDIK 282
                 V M G       G   + 
Sbjct: 382 SLDHIQVNMIGSVNYSHTGSFKLS 405


>gi|311113254|ref|YP_003984476.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931]
 gi|310944748|gb|ADP41042.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931]
          Length = 312

 Score =  112 bits (279), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 30/298 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLI-----------HDFQ 56
            K  G GN  + +        + +D I            D  +                +
Sbjct: 17  TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNMLEE 76

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
                 F+   N DGS  + CGNG+R  V +L +         ET++             
Sbjct: 77  HPDAIWFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVART 136

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                  +  W  I       +   +  H+     +  R    +SMGNPH +  +  +  
Sbjct: 137 EEGYAIDMGPWSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQEGK 194

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGVGLTAACGS 227
              L    +    +P   +G N+       LE+         + +R +ERGVG T +CG+
Sbjct: 195 LDGLD-LNSQPQVNPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGETLSCGT 253

Query: 228 AACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279
            ACA+  A+      +      V + GG L + +     D  HV + G A+   + +L
Sbjct: 254 GACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQTVAKIEL 311


>gi|317010785|gb|ADU84532.1| diaminopimelate epimerase [Helicobacter pylori SouthAfrica7]
          Length = 273

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 96/269 (35%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +            
Sbjct: 60  NSDGSQAGMCGNASRCVGLFAYQHAIAPKEHVFLAGQREISIRIEEPNTIESNLGNYKIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             IP       +   +F         +   +++  G PH + FV+       L S   L 
Sbjct: 120 DTIP------ALKCKKFFTNDSVLASIPTFYLIDTGVPHLVGFVK---NKGLLNSLDTLE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +        N++IA + + +++ L+T+ERGV   T ACG+   A  +A+   + T +  
Sbjct: 171 LRTLRHDFNANINIAFIENQKTIFLQTYERGVEDFTLACGTGMAAVFIAACVFYNTPQNA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    N+ +F  G  +  
Sbjct: 231 TLIPKSNEFLELSLK-NDEIFYKGAVRYI 258


>gi|226326692|ref|ZP_03802210.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198]
 gi|225204913|gb|EEG87267.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198]
          Length = 162

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 5/151 (3%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           M G+GN  +V+D    +   + + I  L+       FDQ++++    D  +D   RI N 
Sbjct: 1   MHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNA 60

Query: 70  DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           DGSEV  CGNG RC  RF+  +    ++     T  G +  +   +  + V+MGEP  + 
Sbjct: 61  DGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLQVMDNDDVCVNMGEPEFEP 120

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158
           +  P      K  +D ++ G   H  +   F
Sbjct: 121 QKNPF--PCTKGRKDLYYQGNGTHCIMWCSF 149


>gi|315146936|gb|EFT90952.1| diaminopimelate epimerase [Enterococcus faecalis TX4244]
          Length = 326

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 45/320 (14%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49
           M+   K+ G  N   ++D      ++T++ I      L + +                  
Sbjct: 4   MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
               +    + +A +R+IN DGSE   CGNG+R V R+L  + + KSFT ET+   L  +
Sbjct: 58  ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113

Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +         +  V++     +   I +      +  +          F      V++ N
Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTISMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169

Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           PH + FV+ + L   +          ++P F EG+N+S   +     L +RT+ERGVG T
Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229

Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275
           +ACG+A CAS +    L        ++VK  GG +    H+  +   +M   G A     
Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289

Query: 276 -EGKL-DIKTGKWIKKNEDD 293
            EG L D+  G + K    +
Sbjct: 290 IEGSLTDLLNGAFEKITITE 309


>gi|227533415|ref|ZP_03963464.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188981|gb|EEI69048.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 335

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 125/320 (39%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A        D         L       +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175

Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            + L   DL   G +  AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEELAGPDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKW----IKKNEDDEAY 296
           +  G W    IK   +   Y
Sbjct: 296 LLAGDWQQAKIKATGEQAEY 315


>gi|15835329|ref|NP_297088.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
 gi|270285500|ref|ZP_06194894.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
 gi|301336897|ref|ZP_07225099.1| diaminopimelate epimerase [Chlamydia muridarum MopnTet14]
 gi|13626307|sp|Q9PJW2|DAPF_CHLMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|8163300|gb|AAF73596.1| diaminopimelate epimerase [Chlamydia muridarum Nigg]
          Length = 269

 Score =  111 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 101/267 (37%), Gaps = 28/267 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++              I  L   +    D  + +   + A  DA + I N D
Sbjct: 15  YSGTGNSFIL-----GEFIPPLQHIVFLCQKEKV--DGFLCVEPSEIA--DAKLTIFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GSE   CGNG+RCV+  +   +  +  + ET+RG+   K      + VDM          
Sbjct: 66  GSEASMCGNGLRCVMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDMTLLDWKKTKK 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L      M  +               F +  G PH + FV  D+    +  +G  L  H
Sbjct: 126 TLTHVLPGMPEE--------------VFFIDTGVPHVVVFV-PDVNKVPVQEWGAFLRYH 170

Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
                 GVN+   +    ++L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFRPNGVNVDFVQTKKEDTLLVYTYERGCERETLSCGTGMLASALVAADVFSLEQDFSL 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273
            V    G ++  + +N  VF+ G    
Sbjct: 231 LVCSRSGNIVKIFSENGKVFLEGPVTL 257


>gi|222823099|ref|YP_002574672.1| diaminopimelate epimerase [Campylobacter lari RM2100]
 gi|254767095|sp|B9KED6|DAPF_CAMLR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|222538320|gb|ACM63421.1| diaminopimelate epimerase [Campylobacter lari RM2100]
          Length = 249

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 95/276 (34%), Gaps = 30/276 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K    GN  ++        + +  A    +  +    D +++I        D    
Sbjct: 1   MKFYKYCASGNDFVIF-ADSEKKDRSELAKILCNRYEGIGADGLIVIVPHDR--YDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             NCDGS+   CGNG R    F    +K+  +        L+     D  +         
Sbjct: 58  FYNCDGSKANMCGNGSRAAAHFAHHHLKKSQYLNFLTGAGLIKSFVDDDIV--------- 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               I L+   D  +   +                + G PH + FV+D      L+ F  
Sbjct: 109 ---EIKLSGIKDIKEAFEYKDRIWQG--------CNTGVPHIVTFVDD------LSEFDI 151

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
            L K        N++ A+V   E + +RT+ERGV   T ACG+   A    +    K   
Sbjct: 152 NLCKEVRKKYNANVNFAKVEDDEFIRVRTYERGVEDETLACGTGMGACFYLAYLNQKVKD 211

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            + +K      L    +   +F  G+ K  +E   +
Sbjct: 212 DILIKPKSNESLYFRLEEEQIFFRGKVKCCFEADYN 247


>gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK]
 gi|189082836|sp|A4TCN3|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK]
          Length = 289

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 104/303 (34%), Gaps = 33/303 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53
           + FAK  G  N  +++       ++T+ A+ AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  D F+   N DGS  + CGNG+R    +L +         E     +V   
Sbjct: 61  DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGG------LEHRSEFVVGSL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168
                + +   +       + + ++                    +   V +GNPH   +
Sbjct: 115 AGPRPVVLHEADDTTADVTVEMGKAVRCG-----TGTATVGGRRFSGLAVDVGNPHLACV 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D     L     +      F  GVN+ I       ++ +R  ERGVG T +CG+ 
Sbjct: 170 DEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSCGTG 229

Query: 229 ACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+ VA+          + V++ GG + +   + +  ++ G +     G+L     +W 
Sbjct: 230 TVAAAVAALDHQGARTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL---AEQWW 285

Query: 288 KKN 290
              
Sbjct: 286 AAQ 288


>gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1]
 gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1]
          Length = 289

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 104/303 (34%), Gaps = 33/303 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53
           + FAK  G  N  +++       ++T+ A+ AL         D ++ +            
Sbjct: 1   MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60

Query: 54  ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  D F+   N DGS  + CGNG+R    +L +         E     +V   
Sbjct: 61  DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGG------LEHRSEFVVGSL 114

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168
                + +   +       + + ++                    +   V +GNPH   +
Sbjct: 115 AGPRPVVLHEADDTTADVTVEMGKAVRCG-----TGTATVGGRTFSGLAVDVGNPHLACV 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                D     L     +      F  GVN+ I       ++ +R  ERGVG T +CG+ 
Sbjct: 170 DEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSCGTG 229

Query: 229 ACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
             A+ VA+          + V++ GG + +   + +  ++ G +     G+L     +W 
Sbjct: 230 TVAAAVAALDHEGAHTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL---AEQWW 285

Query: 288 KKN 290
              
Sbjct: 286 AAQ 288


>gi|320162786|gb|EFW39685.1| diaminopimelate epimerase [Capsaspora owczarzaki ATCC 30864]
          Length = 376

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 125/368 (33%), Gaps = 95/368 (25%)

Query: 11  MEGIGNKILVIDMRGCHDN---------------------ITSDAINALS-TDDNTHFDQ 48
           M G GN  +V++                            +    I A+    +    DQ
Sbjct: 1   MTGCGNDFVVLEASDLESLETASTGFGVTATTASGSGQAMLDKTDIRAMCDRRNGIGCDQ 60

Query: 49  IMLIH--------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--------- 91
           +++I                   ++I N DGSE  +CGN  RCV +    R         
Sbjct: 61  LLVIAAQPVQMDARSGAPVAAVSMQIYNSDGSEALACGNATRCVAQLWMDRELEDDARRE 120

Query: 92  ----MKRKSFTFETIRGILVAKEN--------------------RDGSISVDMGEPILDW 127
                  +     T    L                         ++ ++ VDMG P  +W
Sbjct: 121 QVLAAGEQVVVVITASRTLRCWRALDRSTPSKTIPSTTIAQDPFQNVNVFVDMGLPEFEW 180

Query: 128 KLIPLARSFDK-------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF--FVEDDLYHY 178
             IPL+R   +        D             L     V MGNPH +F    E+ L   
Sbjct: 181 TRIPLSRDVQRGSALDAVTDLGLADAPKDVASLLARGVAVGMGNPHLVFLLPSEEQLNQI 240

Query: 179 DLASFGNLLAKHPMFSEGVNLSIA----------RVTSLESLDLRTWERGVGLTAACGSA 228
           D+ + G+ L  + +F +GVN++ A             +   +  + WERG G T ACGSA
Sbjct: 241 DVRAVGSKLETNALFPQGVNVTFAAIGPAATTGSNAEASRRILAKVWERGAGETLACGSA 300

Query: 229 ACASVVASGCLHKT------------NRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275
           ACA + A+                  N++V SV+M GG L +       + + G ++  +
Sbjct: 301 ACAVIAAAQRTGVLVAPAATAADNAANQSVFSVQMPGGTLQVGISAQGTMVLAGPSRVVF 360

Query: 276 EGKLDIKT 283
            G     +
Sbjct: 361 VGVYSPPS 368


>gi|116493672|ref|YP_805406.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334]
 gi|116103822|gb|ABJ68964.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334]
          Length = 335

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ I     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAITAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A        D         L       +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +  AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK----KNEDDEAY 296
           +  G W +       +   Y
Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315


>gi|84685925|ref|ZP_01013821.1| diaminopimelate epimerase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666018|gb|EAQ12492.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2654]
          Length = 156

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 12/160 (7%)

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           MG P   W  IPL++  D                  +P  V MGNPHA+FFV+ D+   D
Sbjct: 1   MGHPQTMWDEIPLSKPMDTAHL----------PLDCDPMAVGMGNPHAVFFVD-DVGAVD 49

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
           + + G  +   P+F +  N+  A V S + + +R WERG G+T ACGS ACA+ VA+   
Sbjct: 50  VEARGRAVEFDPLFPQRTNVEFAEVRSRDEIRMRVWERGTGITLACGSGACATAVAAAER 109

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             T R V +++ GG L ++W D+  V+MTG     ++  L
Sbjct: 110 GLTERKVRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDATL 148


>gi|323490197|ref|ZP_08095415.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2]
 gi|323396126|gb|EGA88954.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2]
          Length = 317

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 18/282 (6%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ +++   K+ G  N   + +     D+    AI   + D     D I++I     A  
Sbjct: 1   MEMTLI---KVHGSMNTFYMFEG-EERDDYARLAIQLSALDKKI--DGILVILPS--AVA 52

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A +R+ N DGSE   CGNG+RCV R++  R   +    ET++  L  K+    +  ++ 
Sbjct: 53  HAKMRVFNNDGSEASMCGNGLRCVARYVCERDNVQEAVIETMKASLRVKKEETLNEGIET 112

Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHY 178
               +      L +     +D   +   P+  +    PF  VS+ NPH I  V ++L   
Sbjct: 113 YAVEISPVSFSLSSLPMTYLDHTEWIQKPLPFISEEIPFSAVSVPNPHLIGIVPEELQKD 172

Query: 179 DLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                        ++  F +GVN+S           +RT+ERGVG T ACG+A  AS + 
Sbjct: 173 TSHQQKWAQQFNGENKYFPDGVNVSYVTPVERGIF-VRTYERGVGFTNACGTAMTASALI 231

Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273
           S          VSV   GG +            + +TG A  
Sbjct: 232 SCMAGLVPFGEVSVYNPGGLVKCSVRKEGETIQLQLTGNATY 273


>gi|191636926|ref|YP_001986092.1| diaminopimelate epimerase [Lactobacillus casei BL23]
 gi|190711228|emb|CAQ65234.1| Diaminopimelate epimerase [Lactobacillus casei BL23]
 gi|327380951|gb|AEA52427.1| Diaminopimelate epimerase family protein [Lactobacillus casei LC2W]
 gi|327384127|gb|AEA55601.1| Diaminopimelate epimerase family protein [Lactobacillus casei
           BD-II]
          Length = 335

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 125/320 (39%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A        D F       L       +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTFLPAIHPSL---KFTAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +  AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK----KNEDDEAY 296
           +  G W +       +   Y
Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315


>gi|284992293|ref|YP_003410847.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160]
 gi|284065538|gb|ADB76476.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160]
          Length = 285

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 105/300 (35%), Gaps = 40/300 (13%)

Query: 12  EGIGNKILVI---DMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQD--------- 57
            G  N  +V+   D  G  ++ + +  +  L         D ++ +              
Sbjct: 5   HGTQNDFVVLPDPDGTGWPESRLDAAMVRRLCERRAGLGGDGVLRVVPSVHVPDAPAVLG 64

Query: 58  ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                 + F+   N DGS  + CGNG+R  +  L +    +        GI V       
Sbjct: 65  EALGRCEWFMDHRNADGSTAEMCGNGIRLFLHVLVTEGLVERT--ACADGIWVGTRGGPR 122

Query: 115 SISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            +                P       +D   F               VSMGNPH     +
Sbjct: 123 RVGATADGGYWVDMGPARPFGAGTAHLDGASF-----------PGRAVSMGNPHLAVLTD 171

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAACG-SAAC 230
            D+   DLA+   + A   +F +GVN+    V      + LR  ERGVG T +CG  A  
Sbjct: 172 VDVDTLDLATAPAVDA--ALFPDGVNVEFVNVVDPGRHVRLRVSERGVGETRSCGTGACA 229

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
           A+  A          V+V + GG L +   +   V ++G A     G+L +   +W++  
Sbjct: 230 AAWAALEAAGAATGTVTVDVPGGRLGVTVDEQTTV-LSGPAVVVATGELTV---EWLRAT 285


>gi|3789903|gb|AAC67537.1| diaminopimelate epimerase DafE [Dictyostelium discoideum]
          Length = 351

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 80/134 (59%), Gaps = 2/134 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E ++  + +  +G ++  HP+F +  N+   +V + +SL +R W
Sbjct: 217 NSTLVSMGNPHCVLHLE-NVDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 275

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  +   
Sbjct: 276 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 335

Query: 275 WEGKLDIKTGKWIK 288
           +EG +     +  +
Sbjct: 336 FEGSIKFFQDELQQ 349


>gi|301065235|ref|YP_003787258.1| diaminopimelate epimerase [Lactobacillus casei str. Zhang]
 gi|300437642|gb|ADK17408.1| Diaminopimelate epimerase [Lactobacillus casei str. Zhang]
          Length = 335

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 123/320 (38%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A        D         L       +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +  AK+P F EGVN++ A     ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAETLDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK----KNEDDEAY 296
           +  G W +       +   Y
Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315


>gi|118475771|ref|YP_892886.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414997|gb|ABK83417.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40]
          Length = 247

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 34/277 (12%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +  +K    GN  ++        N    A++     ++   D +++I   +    D    
Sbjct: 1   MQLSKYNASGNDFVIFHTFKS-LNRRELAMSLCDRFNSIGADGLIVILPSK--ECDFEWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
             N DGS    CGNG R    +        K+ +F+T  GI+ A  + D           
Sbjct: 58  FYNSDGSLASMCGNGSRAAALYAYQNSLCSKNCSFKTGAGIIKASIDNDF---------- 107

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                + +A +  K   + F                  G PH + FV+      +L+ F 
Sbjct: 108 -----VEVALTAPKKLSEPFIEYGFE------WSFYDTGVPHLVTFVD------NLSKFD 150

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
             +          N++ A +     L++RT+ERGV   T ACG+   AS        K N
Sbjct: 151 LSVCSELRKKYNANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFN 210

Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279
             + V       L +++ D   ++  G+ K  ++  +
Sbjct: 211 PCLKVNPKSKEDLWLKF-DGETIYFKGKVKHCFDTSI 246


>gi|239630913|ref|ZP_04673944.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527196|gb|EEQ66197.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 335

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57
           MV   K+ G  N   + D       +T+  +  +     + +       D ++ +     
Sbjct: 1   MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L           
Sbjct: 59  PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
             + SV++       + +P A        D         L       +++ NPH I FV 
Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175

Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
            ++    DL   G +  AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H      +R  +V   GG +    H +     + + G A       L    
Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295

Query: 281 IKTGKWIK----KNEDDEAY 296
           +  G W +       +   Y
Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315


>gi|255025945|ref|ZP_05297931.1| diaminopimelate epimerase [Listeria monocytogenes FSL J2-003]
          Length = 303

 Score =  109 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 15/280 (5%)

Query: 32  SDAINALSTDDN--THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89
           +D    L    +     D I+ +    +A     +R++N DGS    CGNG+R V R+L 
Sbjct: 9   ADFAIKLCDRKHSLGGADGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLL 68

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGP 148
            +        ET++ IL  K+       +   +  +   K    +   +      F+   
Sbjct: 69  EKHALTEAKVETMKAILDVKKATSLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVV 128

Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTS 206
                      VS+ NPH I FV+  +   D        L +++P F +GVN+S  +  S
Sbjct: 129 PELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLASYLNSENPYFPDGVNVSFVKRLS 188

Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNN- 263
            +++ +RT+ERGVG T ACG+A  A  +    L K      ++V   GG + +    +  
Sbjct: 189 DDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEA 248

Query: 264 ---HVFMTGEAKKEWEGKLDIK----TGKWIKKNEDDEAY 296
               + + G A     G ++ +    T    +   +   Y
Sbjct: 249 GDISLQLIGNATFVSTGSVNYESDTVTELTNEATPEQAQY 288


>gi|224437574|ref|ZP_03658532.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
 gi|313144029|ref|ZP_07806222.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
 gi|313129060|gb|EFR46677.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818]
          Length = 272

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 27/291 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLI----HDFQDASV 60
           + F K    GN  L+       +   +S A       +    D ++++            
Sbjct: 1   MQFVKYSSSGNDFLIFQSFERDNGGRSSLAKRVCERHNGIGADGMVVLLLGQDSKDSKKY 60

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
                  N DGS+ + CGN  R +  +            E I     +  ++ G I + +
Sbjct: 61  AYEWEFYNADGSKAKMCGNASRSIGHYAF---------VEGIAPRKHSFLSQAGIIGIII 111

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            E   +     +            HI   N   ++   ++  G PH + FV D       
Sbjct: 112 DESDANL----VQSDLGAYKLVEEHIVESNPYGVKAWALLDSGVPHLVGFVNDKKMLTYS 167

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239
                   +    +      I   +    +   T+ERGV  +T ACG+ A A    +  L
Sbjct: 168 KDEFLQTLREKYNANVNLAYIDESSDKSRILYMTYERGVEDITQACGTGAAAVFAMALRL 227

Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289
               +   +       L ++  +N H+   G+ ++       I   +W+  
Sbjct: 228 GLCGKKALLIPPSNEILELQMTENQHILFKGKVQR-------IAICEWLNS 271


>gi|311896664|dbj|BAJ29072.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054]
          Length = 332

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 103/295 (34%), Gaps = 14/295 (4%)

Query: 9   AKMEGIGNKILVID---MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64
            K  G  N I VID    R         A+  L         D +  + D  D +  A+ 
Sbjct: 7   TKTHGSRNDIFVIDGAPDRHFPAADLERAVTRLCDRKSGLGSDGVYFVEDHGDGTAQAW- 65

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS    CGNGMRC  R L  R   +S+T  T       +  +     V      
Sbjct: 66  -FFNPDGSPALLCGNGMRCAGRLLLDRHGAESWTVNTGPYTFTVRAAQTTPHGVRQVAVE 124

Query: 125 LDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
           L         +        F       +        V+M N H +  V+       +A+ 
Sbjct: 125 LPPADFSPQEAIVADVASPFVGQLLPAYHPALRTTAVAMPNSHLVSVVDSYDRADLVATG 184

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
             +      F  G N+S  +  +   + +RT+ERG GLT +CGS   AS      L    
Sbjct: 185 SRVADLTSAFPIGANVSFVQPLADGEVFVRTFERGAGLTPSCGSGNSASRAVLSRLGLAE 244

Query: 244 R--AVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGKWIKKNEDD 293
              AV ++ +GG   +   +    +   + G A   +E  +++ +   +     D
Sbjct: 245 PGQAVVIRNVGGPARVWLQEKAGQWQPVLEGNATVVYE--VELDSSALLDDAPLD 297


>gi|66827503|ref|XP_647106.1| diaminopimelate epimerase [Dictyostelium discoideum AX4]
 gi|60475211|gb|EAL73146.1| diaminopimelate epimerase [Dictyostelium discoideum AX4]
          Length = 514

 Score =  109 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 80/134 (59%), Gaps = 2/134 (1%)

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           N  +VSMGNPH +  +E ++  + +  +G ++  HP+F +  N+   +V + +SL +R W
Sbjct: 380 NSTLVSMGNPHCVLHLE-NVDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 438

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           +RG+G+T +CG+ A A++V+     K NR  +V+M GG L +EW  +++ VF++  +   
Sbjct: 439 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 498

Query: 275 WEGKLDIKTGKWIK 288
           +EG +     +  +
Sbjct: 499 FEGSIKFFQDELQQ 512



 Score = 65.2 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 15/113 (13%)

Query: 1   MQSSMVDFAKMEGIGNKILV--IDM----------RGCHDNITSDAINALSTDDNTHFDQ 48
           + S ++ F KM   G   ++  ID           R     + + A      +     D 
Sbjct: 57  LSSVILKFCKMHVRGQDFIIFHIDNLRVEYNNSSFRPSIQVLQNIAQRLCDREQGVGADN 116

Query: 49  IMLIHDFQD---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT 98
            +++    +      D  + I N DGS  ++C  G+ CV +++     +   T
Sbjct: 117 TLVLTPPPNDKLNETDFQLLIFNSDGSIAENCTTGVSCVCKYIVDYNLKSYRT 169


>gi|308176880|ref|YP_003916286.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117]
 gi|307744343|emb|CBT75315.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117]
          Length = 311

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 94/310 (30%), Gaps = 51/310 (16%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF---------- 55
            FAK    GN  +++        ++ + + A+         D ++               
Sbjct: 13  RFAKGHATGNDFVLVADPEAKLELSPEQVAAVCHRRFGIGADGLIRAVPTSLVPGYEEQF 72

Query: 56  -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
             +     F+   N DGS  + CGNG+R    +L +         ++ +    A      
Sbjct: 73  LDNPKAYWFMDYRNNDGSIAEMCGNGVRAFAHYLIAEGLISLQVGQSFQIGSRAGVKEIT 132

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            ++      +  W LI    + ++                     ++MGNPH +  +  D
Sbjct: 133 RLADGYAVNLGPWGLIFEQEATERSIDSMVKPRGWEQAL--PALSITMGNPHTVVAL-PD 189

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIA-------RVTSLESLDLRTWERGVGLTAACGS 227
               +           P+   G N+              +  + +R +ERGVG T +CG+
Sbjct: 190 AQMLEELDLFQAPEVSPVPVNGTNVEFVVPSEPLIEEDGVAQVQMRVYERGVGETLSCGT 249

Query: 228 AACASVVASGCLHKTNRAVSVKM------------------LGGGLLIEWHDNNHVFMTG 269
            ACA+  A     +      +                     GG   I         ++G
Sbjct: 250 GACAAAAAVRYWAR--STALINQWAVTVPGGVVGVEFRSNEAGGEDTI---------LSG 298

Query: 270 EAKKEWEGKL 279
            A     G +
Sbjct: 299 PADLVARGVI 308


>gi|242310400|ref|ZP_04809555.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489]
 gi|239522798|gb|EEQ62664.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489]
          Length = 253

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 31/271 (11%)

Query: 8   FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
           F+K    GN  +++   R   D+ ++ A       +    D ++++   +    D     
Sbjct: 8   FSKYSASGNDFILMHTFRYNEDSYSNLAKQICHRQEGIGADGLIVLKPHR--EYDFEWEF 65

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS  + CGNG R    +        +      +  ++  E         + +  + 
Sbjct: 66  YNADGSVAEMCGNGSRAAGMYARDLGLAGNSQKFLSKAGMIGVEIEGDWAESALSKAEVL 125

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
            + I                      F +N ++++ G PH +    +DL    L      
Sbjct: 126 KQDI--------------------CEFGKNWWLINTGVPHLVC---EDLEIMGLNKEDLR 162

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
             +H   +     S       + +  RT+ERGV   T ACG+   A        +K    
Sbjct: 163 FLRHKYNANINIASC----REDRVLARTFERGVEDETLACGTGMAAMFYYLLLANKVKNP 218

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
                     L    +N  +++ G+ +K  +
Sbjct: 219 CLFNPASKEDLYLREENGKLYLKGKVRKICD 249


>gi|55274302|gb|AAV49044.1| DapF [Azospirillum lipoferum]
          Length = 92

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259
             A+V S  ++ +R WERG G+T ACG+ ACA++VA+     T R   + + GG L IEW
Sbjct: 1   EFAQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEW 60

Query: 260 HDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294
            +++ V MTG     + G+L   + + +   + D 
Sbjct: 61  TEDDRVLMTGPVALAFSGRL---SAELVSVGQGDA 92


>gi|38234023|ref|NP_939790.1| diaminopimelate epimerase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200285|emb|CAE49970.1| diaminopimelate epimerase [Corynebacterium diphtheriae]
          Length = 297

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 96/293 (32%), Gaps = 33/293 (11%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------------H 53
            K  G  N  ++I        +T D I AL         D ++ +               
Sbjct: 14  YKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSGVLAAL 73

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN 111
               A+ D F+   N DGS  Q CGNG R    ++ +        F   T  G    K  
Sbjct: 74  PDGVAATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVR 133

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFF 170
                  ++   +          S +        IG      L     V MGNPH A   
Sbjct: 134 SFDDSQAEVTVDM---------GSAEVTGVSTCTIGSQQFAGLG----VDMGNPHLACVV 180

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
                   +       L     F EGVN+ IA         +R +ERGVG T +CG+   
Sbjct: 181 PGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTV 240

Query: 231 -ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +  A       +  V V + GG + +    +    +TG ++    G +++ 
Sbjct: 241 ATARAALADAGHADGEVVVVVPGGKVRVTIQGDES-TLTGPSRIVASGYINLA 292


>gi|283456481|ref|YP_003361045.1| diaminopimelate epimerase [Bifidobacterium dentium Bd1]
 gi|283103115|gb|ADB10221.1| DapF Diaminopimelate epimerase [Bifidobacterium dentium Bd1]
          Length = 282

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 97/289 (33%), Gaps = 35/289 (12%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD--------------ASVDAF 63
           +  D        T+D +  L         D ++ +   QD                 + F
Sbjct: 2   VYADP-DGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLADCAAGQAEWF 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           +   N DGS  + CGNG R +  F   +        E  R    A       I   +GE 
Sbjct: 61  MDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVK----ILTSLGEV 116

Query: 124 ILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DLYHY 178
               K +      S+ + D D + +             V MGNPH +  +ED    L   
Sbjct: 117 EGLGKDVFRVEMGSWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVAVIEDAFASLPTV 176

Query: 179 DLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLTAACGSAACAS 232
           +           P      N+                  +R  ERG G T +CG+  CA+
Sbjct: 177 EELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSCGTGLCAT 236

Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            +        +   ++ + GG L ++  D++ V +TG A     GK+++
Sbjct: 237 AITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVEL 281


>gi|163839484|ref|YP_001623889.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209]
 gi|162952960|gb|ABY22475.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209]
          Length = 307

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 97/303 (32%), Gaps = 37/303 (12%)

Query: 6   VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-------- 56
           V F+K  G GN  ++I D  G HD   +  + A         D  +     +        
Sbjct: 12  VSFSKGHGTGNDFILIADPDGVHDIDEATVVAACDRHRGIGADGFIRAIKSRELAEGTAV 71

Query: 57  ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGILVA 108
              +   + F+   N DGS  + CGNG+R  V+FL           +     T  G+ + 
Sbjct: 72  LDANPHAEWFMDYRNADGSISEMCGNGVRVFVQFLLESELVWLEPGQILPIGTRDGVKLV 131

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           +    G             +      + D+          ++             +    
Sbjct: 132 RRTAAGFSVDMGQWKFTMPQ-----TAEDRGVDSLVTANGLDVARPALSINTGNAHTLVA 186

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222
                +L   DL     +    P+   G N+  A             + +R +ERGVG T
Sbjct: 187 LAHRAELDELDLHRAPIVD---PVPEHGSNVEFALPHDPLVVGGIAEISMRVFERGVGET 243

Query: 223 AACGSAACASVVASGCLHKTNRA--VSVKMLGGGL----LIEWHDNNHVFMTGEAKKEWE 276
            +CG+ ACA+  A+             + + GG +     +      HV ++G A     
Sbjct: 244 LSCGTGACAAAAATRFWAGEGAPAEWKINVPGGSVVAKFFVAEDQTEHVELSGPAVIVAR 303

Query: 277 GKL 279
           G  
Sbjct: 304 GVF 306


>gi|154509066|ref|ZP_02044708.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798700|gb|EDN81120.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC
           17982]
          Length = 307

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 92/302 (30%), Gaps = 39/302 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
            K  G GN  +V      +D+     +      S       D  +      +     F+ 
Sbjct: 13  VKAHGAGNSFVV--ATDQYDDYDPSEVEVATLCSPAFGIGADGFI---RAVERDGLWFMD 67

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISVDM 120
             N DGS+ + CGNG+R  V  L                 T  GI       +       
Sbjct: 68  YRNADGSKAEMCGNGVRVFVDHLRREGLVDLPVGQTLDVATRGGIKRVTPESEDEGQGAS 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----SMGNPHAIFFVEDDLY 176
               +     P   + D        +     + + NP  V           +F    D+ 
Sbjct: 128 YRVDMGPAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETLRGVFLPTVDVS 187

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACA 231
                      +  P    G NL +             + +R  ERGVG T ACG+  CA
Sbjct: 188 QI---QQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQACGTGCCA 244

Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLL------IEWHD------NNHVFMTGEAKKEWEG 277
           + +A+             V + GG ++      I+W        +  VF+TG A +  E 
Sbjct: 245 AAIATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPQITDASVFLTGHATRVAEI 304

Query: 278 KL 279
            L
Sbjct: 305 HL 306


>gi|330444245|ref|YP_004377231.1| diaminopimelate epimerase [Chlamydophila pecorum E58]
 gi|328807355|gb|AEB41528.1| diaminopimelate epimerase [Chlamydophila pecorum E58]
          Length = 276

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 111/273 (40%), Gaps = 28/273 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+  +          +   I  L T  +   D  + +   Q A  DA + I N D
Sbjct: 15  YSGAGNRFFL----KTGSPSSPALIRLLCTQAHV--DGFLYLEPSQIA--DAKLAIFNAD 66

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC + +L  ++++   T  T +G+          + VDM  P  ++   
Sbjct: 67  GSRPTMCGNGLRCAIAYLAQKLEKPQITIATDQGVYSGVYFSWERVLVDMTLPEWNFSSH 126

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            +  S                L     F +  G PH + F   ++   D+A  G  L  H
Sbjct: 127 EIVLS---------------GLGKVQVFFIHTGVPHLVVFC-PEIASIDVAVLGRELRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR-AVS 247
             F   G N++   + S + L +RT+ERG+   +AACG+   A+V  +       +  V 
Sbjct: 171 TTFAPSGANVNFVEIFSEQQLRIRTYERGLERESAACGTGCIAAVKTALFRGFVKQGEVI 230

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           V +    + + + +   +++ G    E  G+L+
Sbjct: 231 VHVSQESMKV-FIEGERIYLEGPVTIESSGRLE 262


>gi|184201226|ref|YP_001855433.1| diaminopimelate epimerase [Kocuria rhizophila DC2201]
 gi|183581456|dbj|BAG29927.1| diaminopimelate epimerase [Kocuria rhizophila DC2201]
          Length = 297

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 98/293 (33%), Gaps = 26/293 (8%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----------- 57
           K  G GN  +V   R    ++  + + A+         D ++     +D           
Sbjct: 7   KAHGTGNDFVVFTDRDGSLDVPPETVAAVCDRHLGLGGDGLIRAVRSRDLEEGRRLLERH 66

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              + F+   N DGS  Q CGNG+R  V  L             +R    A        S
Sbjct: 67  PDAEWFMDYRNADGSVAQMCGNGVRVFVDHLVREGLVTLPRGARLRIGTRAGVRTVARTS 126

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
                 +  W          +       +        R    + MGNPH +  +  +   
Sbjct: 127 GGYAVDMGPWSF--TRGELARERGSDCVVTAAGLTVPRPGVSIGMGNPHTVVVLS-EGEK 183

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACAS 232
            D        A  P+  +G N+            L  L++R  ERGVG T +CG+ ACA+
Sbjct: 184 LDTLDLHTAPAVDPVPVDGTNVEFVVPLEHDDTDLGRLEMRVHERGVGETHSCGTGACAA 243

Query: 233 VVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279
             A+      ++     V++ GG L + +        HV + G  +     +L
Sbjct: 244 AAATRFWGGPQSPDRWFVQVPGGVLSVTFVPAPDGTEHVVLAGPVRVVATAEL 296


>gi|109947347|ref|YP_664575.1| diaminopimelate epimerase [Helicobacter acinonychis str. Sheeba]
 gi|109714568|emb|CAJ99576.1| dapF [Helicobacter acinonychis str. Sheeba]
          Length = 264

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKR-DFSNLARQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F                   ++    + +I           
Sbjct: 60  NSDGSQASMCGNASRCVGLFAYQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDIL 119

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           ++I  +        D           +   +++  G PH + FV+       L S   L 
Sbjct: 120 EIISTSGGKKSFSNDSVLAS------IPTFYLIDTGVPHLVGFVK---KKESLNSLNILE 170

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
            +    +   N++IA + + +++ L+T+ERGV   T ACG+   A+  A+   + T R  
Sbjct: 171 LRALRHASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNA 230

Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           ++       L +    +N +F  G  +  
Sbjct: 231 TLIPKSNEHLELSLR-DNEIFYKGAVRYI 258


>gi|281210560|gb|EFA84726.1| hypothetical protein PPL_01718 [Polysphondylium pallidum PN500]
          Length = 428

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 12/137 (8%)

Query: 157 PFVVSMGNPHAIFFVEDD---------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
             +VSMGNPH + F++D+         L   D++  G  L    +F +  N+    V + 
Sbjct: 291 CVLVSMGNPHCVIFLKDNQGSIADESQLESMDISYIGRKLESDGLFIDSCNVEFVSVIAQ 350

Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEW-HDNNH 264
             L +R WERG G T ACG+ ACA  VAS    K   + ++SV+M GG L+I+W  ++N 
Sbjct: 351 NKLKVRVWERGAGETLACGTGACAVAVASILTGKSVISESISVEMPGGELIIDWNKEDNK 410

Query: 265 VFMTGEAKKEWEGKLDI 281
           V+ TG A   +  +++I
Sbjct: 411 VYKTGPATTVYSSEVNI 427



 Score = 72.5 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 40/133 (30%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAI------------------------------ 35
           V F KM G GN  ++         I S+                                
Sbjct: 29  VSFTKMHGAGNDFVLFKREDIKRTIVSNKANGHGHTNGNSNGNNNGNGTSNGNGNYSYVP 88

Query: 36  ---------NALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85
                     +++        DQ++++ D   +  D  + I N DGS+   CGNG+RC  
Sbjct: 89  SLDELAYISKSIANRKLGVGCDQVIIVSDSPSSKSDYEMLIFNNDGSQAMMCGNGVRCFS 148

Query: 86  RFLTSRMKRKSFT 98
           +++T       + 
Sbjct: 149 KYITDNRIPSIYN 161


>gi|289642111|ref|ZP_06474263.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata]
 gi|289508074|gb|EFD29021.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata]
          Length = 332

 Score =  106 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 106/299 (35%), Gaps = 26/299 (8%)

Query: 6   VDFA--KMEGIGNKILVIDMRGCHDNITS----DAINALSTDDN-THFDQIMLIHDFQDA 58
           + F   K  G  N I ++D R      T     D +  +         D +  + D +  
Sbjct: 1   MKFELLKAHGSSNDIFIVDGRPERIFSTPAEVADFVRLVCDRQGPLGGDGLYFVDDSRAV 60

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113
               F    N DGS  + CGNG+RCV R +  R +  +    T  G    +         
Sbjct: 61  PEAFF---FNPDGSSAKLCGNGLRCVGRLVLERREADALDVSTGGGRFRVERIPQVAAGV 117

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S++V++         +P+         +                 V++ N H +  V+D
Sbjct: 118 WSVAVELPPVTFRAADVPVVT----TGAEHVDTVIPTLHPALRFTGVAVPNSHLVAVVDD 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGVGLTAACGSAACAS 232
              +  +A  G       +   G N+S  R  +    + +RT+ERG GLT +CGS   AS
Sbjct: 174 YDENELVAVGGAAAGLPVVLPAGANVSFVRPLTAPGEIFVRTFERGAGLTPSCGSGVVAS 233

Query: 233 VVASGCLHK--TNRAVSVKMLGG--GLLIEWHDNNHVF--MTGEAKKEWEGKLDIKTGK 285
                 L     +  + V+  GG     +    +  +   + G A   +   +D++   
Sbjct: 234 RAVYSRLGHAPADEPLLVRNPGGCARSFLTPAADGALTPRLEGNATFVYRAVVDLEQLA 292


>gi|32267200|ref|NP_861232.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449]
 gi|32263253|gb|AAP78298.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449]
          Length = 264

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 27/285 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           + F K    GN  L+       D + T+ A +     +    D ++ +    +       
Sbjct: 1   MRFVKYSSNGNDFLIFTTHTYDDGSRTALAKSVCERHNGIGADGMVAVIPAINKDYAYEW 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              N DGS  + CGN  R V  +       +   F   +  L+     D  IS+   +  
Sbjct: 61  EFYNADGSVAKMCGNASRSVGHYAYVEGIAQKRHFFLSKVGLIGITLDDNDISLVQSD-- 118

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                         +  D     P     +++  ++  G PH + FV  +          
Sbjct: 119 --------LGECALLQEDIIESNPYG---VKSWNLLDSGVPHLVGFVSQE-NALPTQKDR 166

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            L      ++  V+L         ++   T+ERGV  +T ACG+ A A    +  L    
Sbjct: 167 LLEDLRHKYNANVSLGF---IGEGAISYSTYERGVEDITQACGTGAIAVFALALKLGLCE 223

Query: 244 RAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287
           ++  +       L +  ++++H+   G+ K+       I T +W+
Sbjct: 224 KSAILIPPSKELLHLYMNEDSHILFKGKVKR-------IATCEWL 261


>gi|258507109|ref|YP_003169860.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG]
 gi|257147036|emb|CAR86009.1| Diaminopimelate epimerase [Lactobacillus rhamnosus GG]
 gi|259648479|dbj|BAI40641.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG]
          Length = 335

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T+  + A      +         D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L   +       
Sbjct: 59  PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-V 171
             + SV++         +P A        D         L       V++ NPH I F  
Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSL---KFTAVAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++L   DL   G +  AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 KEELASPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H       R  +V   GG +    H ++    + + G A       +    
Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHERYWIELIGNATVTATITVPDEA 295

Query: 281 IKTGKWIKKNE----DDEAY 296
           +++GK  +       +  AY
Sbjct: 296 LESGKLTQATFQPTGEQAAY 315


>gi|227495840|ref|ZP_03926151.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434]
 gi|226834597|gb|EEH66980.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434]
          Length = 341

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 89/319 (27%), Gaps = 49/319 (15%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDF-----------Q 56
            K     N  L++    C   +++ D             D  + +               
Sbjct: 25  IKGHATENDFLLLVDPDCQVALSAGDVAEVCDRHAGVGADGFVRVVRTCALPGVHRFHEA 84

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKEN 111
               + F+   N DGS  Q CGN +R +   L            S T  T  G       
Sbjct: 85  VPEAEWFMDYYNADGSLAQMCGNAIRLMAEVLVCEGLVTLDDGDSVTIGTRGGARTLTRA 144

Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171
                       ++      L    D+       +  +          +   +       
Sbjct: 145 GQLWTVDMGPARLIRP-EHALGEVDDEGWDTAVTVPGLEGPRAALSIAMPNPHTVVALSE 203

Query: 172 EDDLYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSL--------------------ES 209
           E +L     A   +  A    P+  +G NL +                            
Sbjct: 204 EAELDAALFAGLTDSDAPVYEPVPPQGTNLELVVALGEESDGDAAESTGQDAEASVRVGR 263

Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIE-----WHDN 262
             +R  ERGVG T +CG+  CA  VA       +      + +LGG + +      W  +
Sbjct: 264 ARMRVLERGVGETRSCGTGCCAVAVALHEWEGEDAPTDYLIDVLGGQVGVHVGADPWAPD 323

Query: 263 NHVFMTGEAKKEWEGKLDI 281
             V +TG A     G+L +
Sbjct: 324 ATVLLTGPATI--TGRLTL 340


>gi|255507016|ref|ZP_05382655.1| diaminopimelate epimerase [Chlamydia trachomatis D(s)2923]
 gi|289525474|emb|CBJ14951.1| diaminopimelate epimerase [Chlamydia trachomatis Sweden2]
 gi|296435026|gb|ADH17204.1| diaminopimelate epimerase [Chlamydia trachomatis E/150]
 gi|296438746|gb|ADH20899.1| diaminopimelate epimerase [Chlamydia trachomatis E/11023]
          Length = 275

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 28/267 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++          + + +  L  ++    D  + +   + A  DA + + N D
Sbjct: 15  YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  +      +  + ET RG+   K      + VDM  P       
Sbjct: 66  GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNQVLVDMTLPDWKKAER 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L      M                  F +  G PH + FV  DL    +  +G+ L  H
Sbjct: 126 KLTHVLPGMPEQ--------------VFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170

Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
                EGVN+   +    + L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           +V      L+  + +   VF+ G    
Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPVSL 257


>gi|15605157|ref|NP_219942.1| diaminopimelate epimerase [Chlamydia trachomatis D/UW-3/CX]
 gi|166154643|ref|YP_001654761.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu]
 gi|166155518|ref|YP_001653773.1| diaminopimelate epimerase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802857|ref|YP_002888051.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804779|ref|YP_002888933.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311238|ref|ZP_05353808.1| diaminopimelate epimerase [Chlamydia trachomatis 6276]
 gi|255317540|ref|ZP_05358786.1| diaminopimelate epimerase [Chlamydia trachomatis 6276s]
 gi|255348797|ref|ZP_05380804.1| diaminopimelate epimerase [Chlamydia trachomatis 70]
 gi|255503337|ref|ZP_05381727.1| diaminopimelate epimerase [Chlamydia trachomatis 70s]
 gi|301335910|ref|ZP_07224154.1| diaminopimelate epimerase [Chlamydia trachomatis L2tet1]
 gi|8134393|sp|O84437|DAPF_CHLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807489|sp|B0BC67|DAPF_CHLTB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|229807505|sp|B0B802|DAPF_CHLT2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|3328860|gb|AAC68027.1| Diaminopimelate Epimerase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930631|emb|CAP04128.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu]
 gi|165931506|emb|CAP07082.1| diaminopimelate epimerase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273079|emb|CAX09992.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274091|emb|CAX10885.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT]
 gi|296435953|gb|ADH18127.1| diaminopimelate epimerase [Chlamydia trachomatis G/9768]
 gi|296436880|gb|ADH19050.1| diaminopimelate epimerase [Chlamydia trachomatis G/11222]
 gi|296437814|gb|ADH19975.1| diaminopimelate epimerase [Chlamydia trachomatis G/11074]
 gi|297140314|gb|ADH97072.1| diaminopimelate epimerase [Chlamydia trachomatis G/9301]
 gi|297748560|gb|ADI51106.1| Diaminopimelate epimerase [Chlamydia trachomatis D-EC]
 gi|297749440|gb|ADI52118.1| Diaminopimelate epimerase [Chlamydia trachomatis D-LC]
          Length = 275

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 28/267 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++          + + +  L  ++    D  + +   + A  DA + + N D
Sbjct: 15  YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  +      +  + ET RG+   K      + VDM  P       
Sbjct: 66  GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLPDWKKAER 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L      M                  F +  G PH + FV  DL    +  +G+ L  H
Sbjct: 126 KLTHVLPGMPEQ--------------VFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170

Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
                EGVN+   +    + L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           +V      L+  + +   VF+ G    
Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPVSL 257


>gi|199598990|ref|ZP_03212398.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001]
 gi|199590098|gb|EDY98196.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001]
          Length = 335

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +T+  + A      +         D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L   +       
Sbjct: 59  PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKNGQSAFKVHTDFADLAVAKQSPLASG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-V 171
             + SV++         +P A        D         L       V++ NPH I F  
Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGGDRIVDTVLPAIHPSL---KFTAVAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++L   DL   G +  A +P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 KEELASPDLERIGKMLNANNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H       R  +V   GG +    H ++    + + G A       +    
Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295

Query: 281 IKTGKWIKKNE----DDEAY 296
           +++GK  +       +  AY
Sbjct: 296 LESGKLAQATFQPTGEQAAY 315


>gi|150021739|ref|YP_001307093.1| diaminopimelate epimerase [Thermosipho melanesiensis BI429]
 gi|149794260|gb|ABR31708.1| Diaminopimelate epimerase [Thermosipho melanesiensis BI429]
          Length = 232

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 43/268 (16%)

Query: 10  KMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           K    GN  ++ D        N   + +     D     D  + +          F+   
Sbjct: 5   KYTANGNSFILFDITDTSLTSNEKKELVIKKCQDR----DGALFVE---TKDGMYFMEYY 57

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGNG R  + +L    K     F T  GI+  K   +  I + M  P++  
Sbjct: 58  NKDGSKAPFCGNGARAFLFYLIKEKKANVDKFLTESGIVSGKILNEK-ILIKMPNPLVAR 116

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
           K+                     ++   + +++++G PH + FV+ D+ H D+ + G   
Sbjct: 117 KI---------------------NVENFSGYLLTVGVPHFVTFVD-DIEHIDVKNIGKK- 153

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246
                     N++     S   + +RT+ERGV   T +CGS   AS +           V
Sbjct: 154 ---IRNKLDANVNFVEKISKNEIKVRTFERGVEDETLSCGSGVTASAIV-----LNESKV 205

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            V   GG L I +  N+  ++ G+ +  
Sbjct: 206 KVHTRGGILHI-YTLNDGFYLEGDVENV 232


>gi|76789164|ref|YP_328250.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13]
 gi|123606873|sp|Q3KLS0|DAPF_CHLTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|76167694|gb|AAX50702.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13]
          Length = 275

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 28/267 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++          + + +  L  ++    D  + +   + A  DA + + N D
Sbjct: 15  YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  +      +  + ET RG+   K      + VDM  P       
Sbjct: 66  GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLPDWKKAER 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L      M                  F +  G PH + FV  DL    +  +G+ L  H
Sbjct: 126 KLTHVLPGMPEQ--------------VFFIDAGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170

Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246
                EGVN+   +    + L + T+ERG    T +CG+   AS + +  +    +   +
Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273
           +V      L+  + +   VF+ G    
Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPVSL 257


>gi|46190611|ref|ZP_00121261.2| COG0253: Diaminopimelate epimerase [Bifidobacterium longum DJO10A]
          Length = 280

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 37/288 (12%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63
           + +D +      T+D +  L         D ++ +                        F
Sbjct: 2   VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGTKWF 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120
           +   N DGS  + CGNG R +  F          + F   T  G+ +     +       
Sbjct: 61  MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              +           +   + D + +             V MGNPH +  +ED      +
Sbjct: 121 VFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDAFASLPV 173

Query: 181 AS---FGNLLAKHPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAACGSAACA 231
                        P+     N+   RV  ++         +R  ERG G T +CG+  CA
Sbjct: 174 VESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETLSCGTGLCA 233

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 234 TGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 279


>gi|23464713|ref|NP_695316.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705]
 gi|23325279|gb|AAN23952.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705]
          Length = 280

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 37/288 (12%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63
           + +D +      T+D +  L         D ++ +                        F
Sbjct: 2   VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGAKWF 60

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120
           +   N DGS  + CGNG R +  F          + F   T  G+ +     +       
Sbjct: 61  MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              +           +   + D + +             V MGNPH +  +ED      +
Sbjct: 121 VFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDAFASLPV 173

Query: 181 AS---FGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGLTAACGSAACA 231
                        P+     N+   RV  ++         +R  ERG G T +CG+  CA
Sbjct: 174 VESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETLSCGTGLCA 233

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 234 TGIVLQAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 279


>gi|33241871|ref|NP_876812.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183]
 gi|33236380|gb|AAP98469.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183]
          Length = 261

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 26/264 (9%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ L+            + +  L  +     D  + +     +  DA + I N D
Sbjct: 19  YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 69

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  L S+  +   +  T  G+          + VDM        + 
Sbjct: 70  GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 129

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L    D + ++                 +  G PHA+  +  ++   DL+  G  L  H
Sbjct: 130 RLESRPDPLPKE--------------VVCIHTGVPHAVVIL-PEISTLDLSILGPFLRYH 174

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV 248
             F  +GVN++  ++     L +RT+ERGV   TAACG+ A AS +     +    ++ +
Sbjct: 175 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 234

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAK 272
              GG L+    +   V++ G   
Sbjct: 235 HTWGGELMTVSQNRGRVYLQGSVT 258


>gi|15618430|ref|NP_224715.1| diaminopimelate epimerase [Chlamydophila pneumoniae CWL029]
 gi|15836050|ref|NP_300574.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138]
 gi|16752523|ref|NP_444785.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39]
 gi|8134395|sp|Q9Z833|DAPF_CHLPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
 gi|4376808|gb|AAD18659.1| Diaminopimelate Epimerase [Chlamydophila pneumoniae CWL029]
 gi|8163393|gb|AAF73646.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39]
 gi|8978890|dbj|BAA98725.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138]
 gi|269303394|gb|ACZ33494.1| diaminopimelate epimerase [Chlamydophila pneumoniae LPCoLN]
          Length = 257

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 26/264 (9%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ L+            + +  L  +     D  + +     +  DA + I N D
Sbjct: 15  YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RC +  L S+  +   +  T  G+          + VDM        + 
Sbjct: 66  GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L    D + ++                 +  G PHA+  +  ++   DL+  G  L  H
Sbjct: 126 RLESRPDPLPKE--------------VVCIHTGVPHAVVIL-PEISTLDLSILGPFLRYH 170

Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV 248
             F  +GVN++  ++     L +RT+ERGV   TAACG+ A AS +     +    ++ +
Sbjct: 171 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 230

Query: 249 KMLGGGLLIEWHDNNHVFMTGEAK 272
              GG L+    +   V++ G   
Sbjct: 231 HTWGGELMTVSQNRGRVYLQGSVT 254


>gi|217076301|ref|YP_002334017.1| diaminopimelate epimerase [Thermosipho africanus TCF52B]
 gi|217036154|gb|ACJ74676.1| diaminopimelate epimerase [Thermosipho africanus TCF52B]
          Length = 237

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 98/273 (35%), Gaps = 39/273 (14%)

Query: 5   MV--DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           M+   F      GN  +V D+ G   N    +   L    +   D ++ +          
Sbjct: 1   MIVEKFT---ATGNSFIVCDILGSKLNDKEKSNFVLKNSKDR--DGVIFVEKRD---GQF 52

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           F+   N DG+    CGNG R  + +L  +   K    +              +  +    
Sbjct: 53  FMDYFNKDGNRAAFCGNGARTFLYYLMKKGYVKEDLVKFYTYAGEITGKLTKNGVMIKMP 112

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                + + +                       + F++++G PH + FV+ ++   D+  
Sbjct: 113 ASNMPQKLTIDS--------------------FSGFLLNVGVPHFVIFVD-NVETIDVNK 151

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241
            G  L          N++  +V   +++ +RT+ERGV   T ACGS   AS       + 
Sbjct: 152 IGKQL----REKLNSNINFVQVLDEKTIKIRTFERGVEAETLACGSGTTASAYVFNKSNL 207

Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
               + VK  GG L + + ++  +++ G  +  
Sbjct: 208 --EKIEVKARGGTLFVHFLNDG-IYLEGGVENV 237


>gi|71901194|ref|ZP_00683297.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
 gi|71729038|gb|EAO31166.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1]
          Length = 212

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 8/209 (3%)

Query: 74  VQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
            Q CGNG RCV  +L        + F  ++       +       +V+MG P+ + + IP
Sbjct: 7   AQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMGLPVFEPERIP 66

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP 191
           L+   +        +       +     VSMGNPHA+  V+  +    +   G LL +H 
Sbjct: 67  LSGFPNACAEYVLSLQG----EVLRCGAVSMGNPHAVVEVDL-IDVAPVERIGPLLQQHV 121

Query: 192 MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKML 251
            F E VN+   +V     + LR +ERG G T ACGS ACA+ V      +  R V V + 
Sbjct: 122 AFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRVGRDVRVVLP 181

Query: 252 GGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279
           GG L ++W      V ++G A+  ++G  
Sbjct: 182 GGTLRVQWPVSGGPVTLSGPARCVFDGVW 210


>gi|34558429|ref|NP_908244.1| diaminopimelate epimerase [Wolinella succinogenes DSM 1740]
 gi|34484148|emb|CAE11144.1| PUTATIVE DIAMINOPIMELATE EPIMERASE [Wolinella succinogenes]
          Length = 255

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 39/282 (13%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  ++       D  ++ A            D ++++     +         N 
Sbjct: 5   KYCASGNDFILFHALKKSDR-SALAQILCDRHRGIGADGLIVLLPH--SLFHFEWEFYNS 61

Query: 70  DGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DGS    CGNG R          +  K   F T  G + A                   K
Sbjct: 62  DGSGADMCGNGARAAALYAYHQGLAPKEQRFLTGAGPISATVED---------------K 106

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF--VEDDLYHYDLASFGNL 186
            + +  +   + +                +++  G PH + F     DL   +L+     
Sbjct: 107 EVEIELTEASILQKEIERAGH------TWWLIDTGVPHLVSFAAQGIDLDSAELSKL--- 157

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA 245
                 +    N+++A+  + + + LRT+ERGV   T ACG+   A+   +        +
Sbjct: 158 -----RWEFNANVNLAK-LTPDGIALRTFERGVEAETLACGTGMAATFWRAKEEGWVKES 211

Query: 246 VSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286
            ++       L +    +  +F  G+  K  +    +++  +
Sbjct: 212 ATLIPASQERLSLRIDKS-KIFFKGKVNKVCDTITSLESLNF 252


>gi|322378405|ref|ZP_08052859.1| diaminopimelate epimerase [Helicobacter suis HS1]
 gi|322380086|ref|ZP_08054342.1| diaminopimelate epimerase [Helicobacter suis HS5]
 gi|321147493|gb|EFX42137.1| diaminopimelate epimerase [Helicobacter suis HS5]
 gi|321149161|gb|EFX43607.1| diaminopimelate epimerase [Helicobacter suis HS1]
          Length = 254

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 90/271 (33%), Gaps = 25/271 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K    GN  L+        + ++ A            D ++++       +     
Sbjct: 1   MHLYKYCASGNDFLITSQFKSG-DYSALAKQLCHRHYGFGADGLVVLLPHH--ELAYTWE 57

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124
             N DGSE + CGN  RC   +   +        F +  GI+  +    G          
Sbjct: 58  FYNADGSEAEMCGNASRCAGFYAYKQGLAPCQHAFLSKAGIIRVEVQSLGQ--------- 108

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                     +  + +          +L  +  +++  G PH ++FV   L         
Sbjct: 109 --------TSALVESNLGVPKWLQTLNLEGKTWYLLDTGVPHLVYFV-PSLKQIPSTKIA 159

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243
            +      F    N++IA +    ++ L T+ERGV  +T ACG+   A  +A+   H   
Sbjct: 160 LMQTLRERF--NANVNIACIIDDHTIQLATYERGVEDITLACGTGMAAVFMAAYQEHHLM 217

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
              ++       L     +N V+  G  +  
Sbjct: 218 PQATLIPPSQEKLSLCLKDNEVYFKGMVEYV 248


>gi|304309744|ref|YP_003809342.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
 gi|301795477|emb|CBL43675.1| Diaminopimelate epimerase [gamma proteobacterium HdN1]
          Length = 334

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 91/316 (28%), Gaps = 43/316 (13%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61
           +  + F KM   G   LVID+   +  I +  I  L+       F  ++++        D
Sbjct: 25  TGRLQFTKMYASGEDFLVIDLVSQYYRIEAQQIQRLAHPQLGIVFGALLMVLPPATPDAD 84

Query: 62  AFIRIINCDGSEVQSCGNG--------------MRCVVRFLTSRMKRKSFTFETIRGILV 107
              R+   +G E+                                 +     ET  G L 
Sbjct: 85  FRFRLFTANGEEIGRAQEATHPAHLLEMLGAARCVAQFVRQRQLTNKHQLLIETPLGELT 144

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
            +        +D   P          +S         H  PV  +          G    
Sbjct: 145 VQIGEFEEACIDFLPPAWANT---FTKSQSFNLVTPSHSTPVTLIHTPAG---ETGTHSH 198

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA---- 223
              + D++    L +  + L  H +F +   +   +V + + + LR +      T     
Sbjct: 199 ALLMADNMDRKALQAIASALENHTLFPKQATIMFMQVENRKRVHLRFFRARTESTFLTED 258

Query: 224 --ACG--------SAACASVVASGCLHKTNRAVSVKM----LG---GGLLIEWHDNNHVF 266
             A G        + A  +          +  V V +     G     L I W  +N V 
Sbjct: 259 AGAAGALEVGGRDTDAFIAAAVGLRQQLIDHPVQVLLHAPTPGFSAHTLGIHWQGDNQVM 318

Query: 267 -MTGEAKKEWEGKLDI 281
            + G A   +EG + +
Sbjct: 319 RLGGTATTVFEGSIAL 334


>gi|320457755|dbj|BAJ68376.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 279

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 92/288 (31%), Gaps = 37/288 (12%)

Query: 19  LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63
           + +D +      T+D +  L         D ++ +   +                    F
Sbjct: 1   MYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVSAVLAGGAKWF 59

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120
           +   N DGS  + CGNG R +  F          + F   T  G+ +     +       
Sbjct: 60  MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRSNTKPYGAN 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                    I +   +   + D + +             V MGNPH +  +ED      +
Sbjct: 120 VF------QIEMG-EWKVGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDAFASLPV 172

Query: 181 AS---FGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLTAACGSAACA 231
                        P+     N+         + T +    +R  ERG G T +CG+  CA
Sbjct: 173 VESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVNERGCGETLSCGTGLCA 232

Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           + +             + + GG L ++  D++ V +TG A    +  L
Sbjct: 233 TGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 278


>gi|229550991|ref|ZP_04439716.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1]
 gi|258538297|ref|YP_003172796.1| diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705]
 gi|229315586|gb|EEN81559.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1]
 gi|257149973|emb|CAR88945.1| Diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705]
          Length = 335

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 33/320 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQD 57
           MV   K+ G  N   ++D       +++  + A      +         D ++ I D   
Sbjct: 1   MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113
                 + ++N DGS  + CGNG+R V R+L+ +  + +F   T    L   +       
Sbjct: 59  PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118

Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-V 171
             + SV++         +P A        D         L       V++ NPH I F  
Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSL---KFTAVAVPNPHLIAFVS 175

Query: 172 EDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +++L   DL   G +  AK+P F EGVN++ A +   ++L  RT+ERGVG T ACG+   
Sbjct: 176 KEELVSPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235

Query: 231 ASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280
           A+ +A    H    A     +V   GG +    H ++    + + G A       +    
Sbjct: 236 ATTLAFILTHPQEAAFECVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295

Query: 281 IKTGKWIKKNE----DDEAY 296
           +++GK  +       +  AY
Sbjct: 296 LESGKLTQATFQPTGEQAAY 315


>gi|329947108|ref|ZP_08294484.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526285|gb|EGF53302.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 316

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 94/315 (29%), Gaps = 48/315 (15%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHD----------- 54
           +  K     N  L++    C   ++   I A+         D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPSCEVAVSGADIAAVCDRHGGIGADGFVRVVRTTALPGAGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109
                 + F+   N DGS  + CGN  R     L S         +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYNADGSVAEMCGNATRLFAHVLDSEGLRPIADGESVTIGTRGGARTVT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              D           +    +      D    D   + P      R    V M NPH + 
Sbjct: 131 RLGDLW------TVDMGPARLTRPEEADDEGWDTTVMVP-GLAGPRAALSVEMPNPHTVV 183

Query: 170 --FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRT 214
               ED+L     A   +  A               + + +      +         +R 
Sbjct: 184 ALGEEDELEAAVFAGLTDSAAPVVYDPLPEVGTNLELVVPLGEEVDPDTQAPVGIARMRV 243

Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267
            ERGVG T +CG+  CA+ VA              + + GG + +        +++ V +
Sbjct: 244 LERGVGETLSCGTGCCAAAVALHTWTGPGAPEDYRLLVPGGEIGVHVGANPLAEDSTVLL 303

Query: 268 TGEAKKEWEGKLDIK 282
           TG A     G++ I 
Sbjct: 304 TGPAAV--TGRVTIA 316


>gi|237753277|ref|ZP_04583757.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375544|gb|EEO25635.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430]
          Length = 249

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 90/272 (33%), Gaps = 31/272 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66
           F+K    GN  ++       +   ++    +    +    D ++++      + D     
Sbjct: 3   FSKYSASGNDFILTHTFKFKEGSWAELAKRICHRQEGVGADGLIVLKPH--LTYDFEWEF 60

Query: 67  INCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            N DGS    CGNG R          +      F T  G++ A+   +    + +   + 
Sbjct: 61  YNADGSVANMCGNGSRAAALYAKDLNLAPNRQEFLTGAGVINAEIFAELESKILVESALT 120

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
             K+I                      F  N +++  G PH +     +L   DL +   
Sbjct: 121 KAKVI----------------QENIQEFGVNWWLIDTGVPHLV-CEGANLNKEDLRAL-- 161

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
                       N++IA +   + +  RT+ERGV   T ACG+   A         K + 
Sbjct: 162 ------RHKYNANINIA-MLEKDCVRARTFERGVEDETLACGTGMAAMFYYLKEKDKVSN 214

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
               K      L    +   +F+ G  +K  +
Sbjct: 215 PCCFKPASNEELFLREEEGRIFLKGNVRKICD 246


>gi|291302029|ref|YP_003513307.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728]
 gi|290571249|gb|ADD44214.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728]
          Length = 271

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 93/283 (32%), Gaps = 33/283 (11%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ--------DA 58
           F+K  G GN  +++        +T+  I  L         D ++ +             +
Sbjct: 12  FSKGHGTGNDFVILADPDNAAPLTNWQIADLCDRRSGIGGDGLLRVVRSAKHPEAVELSS 71

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             + F+   N DGS  + CGNG+R   R+L      +           +   +  G    
Sbjct: 72  EAEWFMDYYNADGSVAEMCGNGVRVFARYLLEHDLAEPGDIPLATRAGLRTVSCVGDEFR 131

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
               P                         +          VSMGNPH +  V+     Y
Sbjct: 132 VDMGPARF----------------EGASEAIVDGRRYAGTRVSMGNPHLVCRVD---DPY 172

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
            L           +F  GVN+          + +R  ERGVG T +CG+ A A+   +  
Sbjct: 173 TLDLHKVPAVDAQLFPTGVNVEFITGP-ANHITMRVHERGVGETRSCGTGAVAAAAVALG 231

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              T    +V + GG L +    +     TG A    EG  ++
Sbjct: 232 GVGT---CTVDVPGGTLTVTVSTDTTTL-TGPAVIVAEGHTNL 270


>gi|259503053|ref|ZP_05745955.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041]
 gi|259168919|gb|EEW53414.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041]
          Length = 334

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 121/294 (41%), Gaps = 32/294 (10%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI--------------M 50
           M    K+ G  N   ++D       +    +  L+         +              +
Sbjct: 1   MAQLLKVHGSQNSFFILDQTKLAQPLADGELRQLAQ-------GLTDSHNGLLGGADGLL 53

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           ++         A +R+IN DGSE   CGNG+R V R++  R  + +F  +T+   L  ++
Sbjct: 54  VVDRPTRPGAVAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLQVRQ 113

Query: 111 NRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI 168
             + +  V      +   +    A  FD +  DR    PV  L        +++ NPH I
Sbjct: 114 ATELAPGVLAFAVEISPVRFDKTALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLI 173

Query: 169 FF-VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
            F  +  +    L   G      +P FS+GVN++ A++   + L +RT+ERGVG T ACG
Sbjct: 174 SFVSQQTIEGPLLGELGPYLNGDNPYFSDGVNINFAQILGPQKLFVRTYERGVGFTNACG 233

Query: 227 SAACASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKK 273
           +   A+ +A   LH      +  ++V   GG +  I    + H  + + G A  
Sbjct: 234 TGMSATSLAFALLHPASAAFDEPITVYNPGGMVKTIAHFTHQHYWIELIGNATF 287


>gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162]
 gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162]
          Length = 290

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 100/297 (33%), Gaps = 30/297 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52
           +DF K  G  N  +++   G   ++T   + AL         D ++ I            
Sbjct: 4   IDFLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVL 63

Query: 53  --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
                  A  D F+   N DGS  + CGNG+R     LT+           + G      
Sbjct: 64  DALPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASS--------LVPGPEFVVG 115

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168
           +R G   V +     +   + +A     +                    V +GNPH   +
Sbjct: 116 SRAGGRPVVVHHADPEAADVSVAMGPATVFGSS---SAGVDGRDLAGIAVDVGNPHLACV 172

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                      L         H +F  G N+ +       ++ +R  ERG G T +CG+ 
Sbjct: 173 VPGLTAADLGGLDVASPPSFDHGLFPHGTNVEVITPLVDGAVHMRVHERGSGETRSCGTG 232

Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             A+ VA+     +    V V + GG + +    +  V + G ++    G + I   
Sbjct: 233 TVAAAVAALRSDDRQEGVVGVHVPGGTVTVTVAPDGAV-LRGPSRIVATGTVRIGAL 288


>gi|148270400|ref|YP_001244860.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1]
 gi|170289205|ref|YP_001739443.1| diaminopimelate epimerase [Thermotoga sp. RQ2]
 gi|281412707|ref|YP_003346786.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10]
 gi|147735944|gb|ABQ47284.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1]
 gi|170176708|gb|ACB09760.1| Diaminopimelate epimerase [Thermotoga sp. RQ2]
 gi|281373810|gb|ADA67372.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10]
          Length = 236

 Score = 99.5 bits (246), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 41/266 (15%)

Query: 11  MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67
               GN  L++D       +    D +      +N    D ++ +          F+   
Sbjct: 3   YSANGNTFLIVDNTQKRIPEEKKPDFV-----RENVGDLDGVIFVELVDGK---YFMDYY 54

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS    CGNG R   ++L  R   K   F  +      K   D SI V M       
Sbjct: 55  NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPG----- 109

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
               ++   +    D               + V +G PH +  V+  +   D+   G  L
Sbjct: 110 ----VSEKKEMKVDD------------YEGYFVVVGVPHFVMEVKG-IDELDVEKLGRDL 152

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246
                +  G N+    V   + L +RT+ERGV   T ACG+    SV A        + V
Sbjct: 153 ----RYKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVT-SVFAVYRDKTGAKEV 206

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +++ GG L ++  +N  +F+ G+ K
Sbjct: 207 KIQVPGGTLFLK-EENGEIFLRGDVK 231


>gi|15644270|ref|NP_229322.1| diaminopimelate epimerase [Thermotoga maritima MSB8]
 gi|4982088|gb|AAD36589.1|AE001799_21 diaminopimelate epimerase [Thermotoga maritima MSB8]
          Length = 236

 Score = 99.1 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 96/266 (36%), Gaps = 41/266 (15%)

Query: 11  MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67
               GN  L++D       +    D +      +N    D ++ +          F+   
Sbjct: 3   YSANGNTFLIVDNTQKRIPEEKKPDFV-----RENVGDLDGVIFVELVDGK---YFMDYY 54

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS    CGNG R   ++L  R   K   F  +      K   D SI V M       
Sbjct: 55  NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPG----- 109

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
               ++   +                    + V +G PH +  V+  +   D+   G  L
Sbjct: 110 ----VSEKKEMKVD------------GYEGYFVVVGVPHFVMEVKG-IDELDVEKLGRDL 152

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246
                +  G N+    V   + L +RT+ERGV   T ACG+   +  V         + V
Sbjct: 153 ----RYKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVTSVFVV-YRDKTGAKEV 206

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAK 272
            +++ GG L ++  +N  +F+ G+ K
Sbjct: 207 KIQVPGGTLFLK-EENGEIFLRGDVK 231


>gi|315453203|ref|YP_004073473.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179]
 gi|315132255|emb|CBY82883.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179]
          Length = 265

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 83/267 (31%), Gaps = 25/267 (9%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69
           K    GN  L+        + ++ A            D ++++               N 
Sbjct: 5   KYCASGNDFLITHQFT-PQDRSALAKRICDRHYGFGADGLVVLLPHSK--HAYTWEFYNA 61

Query: 70  DGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
           DGS    CGN  RCV  +   +       TF +  G++  +          +   +   K
Sbjct: 62  DGSCASMCGNASRCVGLYAYQQGLAPSKHTFLSGAGVISLEVLNLNPQGGVVQSNLGAPK 121

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                                  L  +   ++  G PH + FV+             +  
Sbjct: 122 -----------------RLESLQLEGQIWHLLDTGVPHLVHFVDH-PNKIPTHKTPQMQT 163

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247
               F    N++ A +    ++ L T+ERGV  +T ACG+   A    +   H  N    
Sbjct: 164 LRARFD--ANVNFAYIQDPRTIKLATYERGVEDITLACGTGMAAVFACAYYQHNHNPQAV 221

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKE 274
           +    G  L  +  ++ ++  G+    
Sbjct: 222 LIPPSGEALNWYLRDDELYFQGQVHFI 248


>gi|222099945|ref|YP_002534513.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359]
 gi|221572335|gb|ACM23147.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359]
          Length = 237

 Score = 98.3 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 94/265 (35%), Gaps = 41/265 (15%)

Query: 11  MEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67
               GN  L++D        N   D +      ++    D ++ +    +     F+   
Sbjct: 4   YSANGNTFLMVDNTEKKISENEKPDFV-----RNHVGDLDGVIFVEKVGEK---FFMDYY 55

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS    CGNG R   ++L  R   K   F  +      K   D  I          W
Sbjct: 56  NRDGSMATFCGNGARAFSQYLIDRGWVKQRKFTFLSRAGEIKVFLDDGI----------W 105

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187
             +P      +++ D +               V +G PH I  V+ ++   D+   G LL
Sbjct: 106 VRMPAVSEVKELEVDGY-----------RGHFVVVGVPHFILEVK-NVDEVDVEKLGRLL 153

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246
                     N+      +   L +RT+ERGV   T ACG+   A           ++ +
Sbjct: 154 ----RHKTNANVDFYE-VAQGFLKVRTYERGVERETKACGTGVTAVFFVHHSRTG-SKEM 207

Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271
            V + GG L +   +N  +++ G+ 
Sbjct: 208 KVLVPGGTLFLR-EENGEIYLKGDV 231


>gi|291276326|ref|YP_003516098.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198]
 gi|290963520|emb|CBG39351.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198]
          Length = 253

 Score = 97.5 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 27/273 (9%)

Query: 10  KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68
           K  G GN  L+  +  C      D    L         D  +++   Q  +        N
Sbjct: 5   KYSGSGNDFLITHL--CQHPSPKDLAKELCHRHLGIGADGFIILKPHQ--TYAYAWEFYN 60

Query: 69  CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128
            DGS    CGN  RCV  +       K+          +    +  +++  +G+P     
Sbjct: 61  SDGSSALMCGNASRCVAHYANKHHLAKAQHIFWAGARAIEVHVKKNTVATHLGKPS---- 116

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                               +   +    + +  G PH + F +       L ++     
Sbjct: 117 --------------TVETLSLISSYASYAYKIDTGVPHLVIFAK---SQKSLPAYATQEL 159

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247
           K        N+++    + ++L + T+ERGV  +T ACG+   A+      LH  +   +
Sbjct: 160 KDLREEYNANVNVVYAKNPKTLYVHTYERGVEDITLACGTGMAAASGVYHFLHPDHCLFT 219

Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
                   LI   +  ++   G+ +      +D
Sbjct: 220 CLPPSREELILKVEEQNIIFEGKVRHIATCYID 252


>gi|293192304|ref|ZP_06609415.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309]
 gi|292820219|gb|EFF79213.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309]
          Length = 307

 Score = 96.4 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/302 (19%), Positives = 92/302 (30%), Gaps = 39/302 (12%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
            K  G GN  +V      +D+     +      S       D  +      +     F+ 
Sbjct: 13  VKAHGAGNSFVV--ATDQYDDYDPSEVEVATLCSPAFGIGADGFI---RAVERDGLWFMD 67

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISVDM 120
             N DGS+ + CGNG+R  V  L                 T  GI       +       
Sbjct: 68  YRNADGSKAEMCGNGVRVFVDHLRREGLVDLPIGQTLDVATRGGIKRVTPESEDEGQGAS 127

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----SMGNPHAIFFVEDDLY 176
               +     P   + D        +     + + NP  V           +F    D+ 
Sbjct: 128 YRVDMGSAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETLRGVFLPTVDVS 187

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACA 231
                      +  P    G NL +             + +R  ERGVG T ACG+  CA
Sbjct: 188 QIP---QAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQACGTGCCA 244

Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLL------IEWHD------NNHVFMTGEAKKEWEG 277
           + +A+             V + GG ++      I+W        +  VF+TG A +  E 
Sbjct: 245 AALATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPRITDASVFLTGPATRVAEI 304

Query: 278 KL 279
            L
Sbjct: 305 HL 306


>gi|315604447|ref|ZP_07879513.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314153|gb|EFU62204.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 307

 Score = 96.0 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 96/300 (32%), Gaps = 35/300 (11%)

Query: 9   AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
            K  G GN  +V  D    +D   ++     S       D  +            F+   
Sbjct: 13  FKAHGAGNSFVVATDQFDQYDPSEAEVATLCSPAFGIGADGFI---RAVQRDGSWFMDYR 69

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISVDMGE 122
           N DGS+ + CGNG+R  V  L                 T  GI       +         
Sbjct: 70  NADGSKAEMCGNGVRVFVDHLRREGLVDLPLGATLDVVTRGGIKRVTPLEEDGGHGAHYR 129

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----SMGNPHAIFFVEDDLYHY 178
             +     P + + +        +     + + NP  V           +     D+   
Sbjct: 130 VDMGAAASPASETIEVRIPGVDGVLGGLWVDMPNPHTVVELADEETLRGVTLPTIDVSR- 188

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACASV 233
              + G   +  P  + G NL +         SL  + +R  ERGVG T ACG+  CA+ 
Sbjct: 189 --LAPGQRPSYAPEPASGTNLELVVDLTTPGSSLGHIAMRVLERGVGETQACGTGCCAAA 246

Query: 234 VASGCLHKTNRA--VSVKMLGGGLL------IEWHD------NNHVFMTGEAKKEWEGKL 279
           +A+             V + GG +       I+W        N  V +TG A +  + +L
Sbjct: 247 LATALRRGATAPTQWVVDVPGGRVSVGLDGVIDWSGGTPRVTNASVLLTGPAMRVADIRL 306


>gi|154248770|ref|YP_001409595.1| diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1]
 gi|154152706|gb|ABS59938.1| Diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1]
          Length = 245

 Score = 95.6 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 40/274 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +   K    GN  ++ID      + +  +   L + +N   D  + +      +    + 
Sbjct: 5   LKIYKYNANGNTFILIDCLDNTLDDSEKSEIVLKSVENR--DGAIFVE---RNNNLFHMD 59

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124
             N DG     CGNG R  V +L           F T  G+L A  + D S+ +   + +
Sbjct: 60  YFNRDGKRAAFCGNGARTFVNYLKEYYGLSGEVLFSTTSGMLKALVDEDVSVQMPNPKYV 119

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                                             ++  G PH +  VE ++   D+ +  
Sbjct: 120 KQIS-----------------------YESFQGALIETGVPHIVIRVE-NVDFIDIENVA 155

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG----CL 239
                        N++   V   + L +RT+ERGV   T +CGS   ++           
Sbjct: 156 P----EIRRIFDANVNFYDVVQEKFLRVRTFERGVERETKSCGSGITSTSFYYKYYILKD 211

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273
            K    + V  LGG L + + +N  V++ G  + 
Sbjct: 212 GKQPDEIKVLSLGGVLHVLFKEN-EVYLEGRVEH 244


>gi|169837507|ref|ZP_02870695.1| diaminopimelate epimerase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 123

 Score = 95.2 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
           MG  H++ FV D   +        +     +F + VN++  +V   + +++ TWERG G 
Sbjct: 1   MGTDHSVIFVNDFSDYDIDEIGKKIENYTDLFPKKVNVNFVKVYDRKRMEVITWERGAGR 60

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277
           T ACG+ A AS V +      +  V+VK+ GG L+IE+    N  FMTG ++K  EG
Sbjct: 61  TLACGTGATASAVLAKTFGFVDDKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 117


>gi|468713|emb|CAA55224.1| dapF [Pseudomonas aeruginosa]
          Length = 108

 Score = 94.8 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    + S G  L  HP F +  N+   +V       LR WERGVG T ACG+ ACA+ V
Sbjct: 1   VDSAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAV 60

Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281
           A          V + + GG L IEW      V MTG A + +EG++ +
Sbjct: 61  AGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 108


>gi|239616517|ref|YP_002939839.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1]
 gi|239505348|gb|ACR78835.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1]
          Length = 237

 Score = 93.7 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 42/263 (15%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
               GN   V+D R      +      L    +   D ++ +        D F+   N D
Sbjct: 6   YSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADK--DGVIFVE-------DHFMDYFNRD 56

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           G   + CGNG R  V F+         TFE+  G +    +   ++ +            
Sbjct: 57  GKRAEFCGNGARTYVAFIHEITGETKITFESYAGRIEGFVDGLYNVKMPPVN-------- 108

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
                         + G      ++    +++G PH +   E D    +  +        
Sbjct: 109 --------------YHGSREFQGIK-GEFLTVGVPHFVI--EGDTEKLEWETLIP----- 146

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSVK 249
             +    N+++ +      L +RT+ERGV   T ACG+ A A+        +    V+++
Sbjct: 147 IRWELNTNINVYKEIEPGKLRIRTFERGVEGETGACGTGATATAW-CYARGRKLLQVTLQ 205

Query: 250 MLGGGLLIEWHDNNHVFMTGEAK 272
             GG L++ + +  ++++ G  +
Sbjct: 206 ANGGELVVSFKE-GNIYLGGGVE 227


>gi|116491952|ref|YP_803687.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745]
 gi|116102102|gb|ABJ67245.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745]
          Length = 329

 Score = 93.7 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 36/315 (11%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI--------------M 50
           M+   ++ G  N  +++D       +  D +  L+        Q+              +
Sbjct: 1   MIKLLRVHGSENSFILLDQEQLEIPMNLDQLIQLAI-------QVTNNQTGLLGGADGLL 53

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
           ++     A V   +++IN DGS    CGNG+R V R+L  + +   F  +T +  L    
Sbjct: 54  VVSSSDHAGVRGRMQVINNDGSFASMCGNGLRTVARYLAEKYEENDFLVQTDQADLHVGR 113

Query: 111 -----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
                N   +  V++     + K +P+    ++       +   +   L +   V   + 
Sbjct: 114 VATIGNGLPTYQVEISPVSFNTKNLPMQIE-NQDKLFNAPVRDFDDQLLFSAVAVPNPHL 172

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            AI                 L A +P F +GVN+S  RV     L ++T+ERGVG T AC
Sbjct: 173 IAIDNNNRLSTKKLAELGHRLNASNPWFPKGVNVSFGRVIGQNQLFVQTYERGVGFTNAC 232

Query: 226 GSAACASVVASGCLH----KTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGK 278
           G+   A+ +    L+    + +    +   GG +       H    + + G A   +  +
Sbjct: 233 GTGMSATSLVWSLLNDGQTRLDEVNDIFNPGGMVKTRVNQIHGAYTIDLIGNAT--FTHQ 290

Query: 279 LDIKTGKWIKKNEDD 293
           + I   +  + N + 
Sbjct: 291 IWIDEDQLRQNNLEQ 305


>gi|326773669|ref|ZP_08232952.1| diaminopimelate epimerase [Actinomyces viscosus C505]
 gi|326636899|gb|EGE37802.1| diaminopimelate epimerase [Actinomyces viscosus C505]
          Length = 316

 Score = 92.9 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 85/312 (27%), Gaps = 44/312 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHD----------- 54
           +  K     N  L++   GC   I+   I A          D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK 109
                 + F+     DGS  + CGN  R     L           +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYRADGSVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +          +   +      + D+       +  +          +S  +     
Sbjct: 131 RLGELWTVDMGPARLASPEE-----ADDEGWDTAVDVPGLAGQRAALSVEISGPHTVVAL 185

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRTWE 216
             E +L     A   +  A               +   +   T  +         +R  E
Sbjct: 186 GEESELKAAAFAGLTDSAAPVAYDPAPEAGTNLELVAPLGEETDPDTQSSVGIARVRVLE 245

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFMTG 269
           RGVG + + G+  CA  VA              + + GG + +        ++  V +TG
Sbjct: 246 RGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGADPLGEDGSVLLTG 305

Query: 270 EAKKEWEGKLDI 281
            A     G++ +
Sbjct: 306 PATI--TGRVTV 315


>gi|255029081|ref|ZP_05301032.1| diaminopimelate epimerase [Listeria monocytogenes LO28]
          Length = 271

 Score = 92.9 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 12/253 (4%)

Query: 18  ILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQDASVDAFIRIINCD 70
             ++D  G    + +    +D    L   ++     D I+ +    +A     +R++N D
Sbjct: 7   FSLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSSEAGPIGQMRVVNSD 66

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW-KL 129
           GS    CGNG+R V R+L  +        ET++ IL  K+       +   +  +   K 
Sbjct: 67  GSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGFDIPTYQVEISPVKF 126

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLL 187
              +   +      F+              VS+ NPH I FV+  +   D        L 
Sbjct: 127 NAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLASYLN 186

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRA 245
           +++P F +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  +    L K      
Sbjct: 187 SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETP 246

Query: 246 VSVKMLGGGLLIE 258
           ++V   GG + + 
Sbjct: 247 LNVYNDGGRVQVT 259


>gi|145636698|ref|ZP_01792365.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
 gi|145270224|gb|EDK10160.1| diaminopimelate epimerase [Haemophilus influenzae PittHH]
          Length = 65

 Score = 92.9 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64
          + F+KM G+GN  +V+D    +   T + I  L+       FDQ++++    D  +D   
Sbjct: 1  MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65 RIIN 68
          RI N
Sbjct: 61 RIFN 64


>gi|325068456|ref|ZP_08127129.1| diaminopimelate epimerase [Actinomyces oris K20]
          Length = 316

 Score = 92.1 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 83/310 (26%), Gaps = 42/310 (13%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHD----------- 54
           +  K     N  L++   GC   I+   I A          D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGGGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK 109
                 + F+     DG+  + CGN  R     L           +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYRADGTVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +          +   +      + D+       +  ++         +S  +     
Sbjct: 131 RLGELWTVDMGPARLASPEE-----AEDEGWDTAVVVPGLDGPRAALSVEISGPHTVVAL 185

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRTWE 216
             E +L     A   +                  + + +   T  +         +R  E
Sbjct: 186 GEEGELEAAAFAGLTDSADPVAYDPAPEVGTNLELAVPLGEETDPDTQSSVGIARMRVLE 245

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD-----NNHVFMTG 269
           RG+G T + G+  CA  VA              + + GG + +         ++ V +TG
Sbjct: 246 RGMGETLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGSDPLGADSSVLLTG 305

Query: 270 EAKKEWEGKL 279
            A       +
Sbjct: 306 PAAITARITV 315


>gi|119946940|ref|YP_944620.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
 gi|119865544|gb|ABM05021.1| diaminopimelate epimerase [Psychromonas ingrahamii 37]
          Length = 382

 Score = 92.1 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 102/313 (32%), Gaps = 70/313 (22%)

Query: 6   VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIH-------- 53
           + F K    GN  +++D         D+++  A  A +       D +++I         
Sbjct: 4   IPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQ 63

Query: 54  -----------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI 102
                        Q+   +   R+    G E   CGNG+ C+  +L  +    S +  T 
Sbjct: 64  SINRSRDYWIQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTE 123

Query: 103 RGILVAKENRDGSI------SVDMGEPI--------------LDWKLIPLARSFDKMDRD 142
             +   K  + G+        V++G P               +D  +  +     K   D
Sbjct: 124 IPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKFRAD 183

Query: 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF------------------- 183
                  ++       +V  G PH + F + D    + A +                   
Sbjct: 184 DLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFGSWL 243

Query: 184 ------GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236
                         +F  G+N++ AR  +   ++ R +ERG+   T ACG+ A A     
Sbjct: 244 VEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIY 303

Query: 237 GCLHKTN-RAVSV 248
             +HK N   V V
Sbjct: 304 SQMHKLNISEVDV 316


>gi|83646371|ref|YP_434806.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
 gi|83634414|gb|ABC30381.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
          Length = 413

 Score = 91.0 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 102/308 (33%), Gaps = 71/308 (23%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIH----- 53
           +  V F K    GN  +++D            ++ A  A ST      D ++++      
Sbjct: 12  AKTVPFVKYTSCGNNFVIVDATEDSVLAEMEWSAFAPKATSTTFGIGCDNLLVVQRSNAR 71

Query: 54  --------------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
                             ++ D   R+   +G E   CGNG+ C+  FL  +        
Sbjct: 72  TLDAIAKDRNYWDAKPDLSAADYVFRMFEPNGEEAACCGNGLICIADFLRRKHGVTVSNI 131

Query: 100 ETIRGILVAKENRDGSI-----SVDMGEPILDW-------KLIPLARSFDKMDRDRFHIG 147
            T   +        GS+      V++G P            L PL  + D ++       
Sbjct: 132 ATEIPLSSPNIISIGSLGYDGSWVNLGMPRHTPTQLVNRDSLHPLDDTIDVIEELTIQFR 191

Query: 148 PVNHLFLRN-------PFVVSMGNPHAIFFVEDDLYHYDLASF----------------- 183
             +     +        ++V  G PH + F + D    +LASF                 
Sbjct: 192 RDDLKPYTDASTLTIKGYLVFTGEPHLVIFPDHDFSVPELASFIFGATPEGHTPEDRRRG 251

Query: 184 -----------GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACA 231
                              +F +GV+++ AR+ +L+S+  R +ERG+   T AC + A A
Sbjct: 252 LGAWLVHRIGSFINSRCRHIFPDGVSVNFARIHNLDSVSNRCFERGINRETLACSTGALA 311

Query: 232 SVVASGCL 239
                  L
Sbjct: 312 VAYVVQQL 319


>gi|254674294|emb|CBA10078.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275]
          Length = 101

 Score = 89.8 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
           DD+    +   G+L+  H  F E VN+   ++ S  ++ LR +ERGVG T ACG+ ACA+
Sbjct: 5   DDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAA 64

Query: 233 VVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFM 267
           VVA   L   +  + V V + GG L IEW     V M
Sbjct: 65  VVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMM 101


>gi|320534674|ref|ZP_08035115.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133108|gb|EFW25615.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 316

 Score = 88.7 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 85/313 (27%), Gaps = 44/313 (14%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHD----------- 54
           +  K     N  L++   GC   I+   I A          D  + +             
Sbjct: 11  ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK 109
                 + F+     DGS  +  GN  R     L           +S T  T  G     
Sbjct: 71  ASVPEAEWFMDYYRADGSVAEMSGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
              +          +   +      + D+       +  +          +S  +     
Sbjct: 131 RLGELWTVDMGPVRLTSPEE-----ADDEGWDTAVVVPGLVGQRAALSVEISGPHTVVAL 185

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRTWE 216
             E +L     A   +                  + + +   +  +         +R  E
Sbjct: 186 GEEGELEAAAFAGLTDSTDPVAYDPAPEAGTNLELVVPLGEESDPDTHSPVGIARMRVLE 245

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFMTG 269
           RGVG + + G+  CA  VA              + + GG + +        +++ V +TG
Sbjct: 246 RGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVRVVADPLGEDSSVLLTG 305

Query: 270 EAKKEWEGKLDIK 282
            A     G++ + 
Sbjct: 306 PAAI--TGRVTVA 316


>gi|326432604|gb|EGD78174.1| diaminopimelate epimerase [Salpingoeca sp. ATCC 50818]
          Length = 462

 Score = 88.3 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESL 210
              R  ++V MGNPHA+  ++  +   D+   G+   +    F + VN+   +V +   +
Sbjct: 328 PQPRPVWIVDMGNPHAVVLLDTSVDDVDVHKLGSALQSMRACFPDSVNVEFMQVLTPTHV 387

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNH--VF 266
            LR +ERG G T ACG+ ACA+V A+        +  ++V M GG L + W  + H  + 
Sbjct: 388 RLRIFERGAGETLACGTGACAAVAAAVLHGHVLASAGITVSMRGGDLTVHWTGHPHAPLT 447

Query: 267 MTGEAKKEWEGKLDI 281
           MTG A   + G + +
Sbjct: 448 MTGPATCCFAGAITL 462



 Score = 71.0 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDN-----ITSD---AINALSTDDNTHFDQIMLIHDFQD 57
          + F KM+G+GN  +V+D            +  D               FDQ++L+     
Sbjct: 14 LRFWKMQGLGNDFVVVDGVRQPHEVVHRLLDPDHGTLKRLADRRFGVGFDQLLLVQASAT 73

Query: 58 AS 59
          A 
Sbjct: 74 AP 75


>gi|325982001|ref|YP_004294403.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
 gi|325531520|gb|ADZ26241.1| diaminopimelate epimerase [Nitrosomonas sp. AL212]
          Length = 279

 Score = 87.9 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 112/274 (40%), Gaps = 30/274 (10%)

Query: 9   AKMEGIGNKILVIDMRGCHDN-ITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66
            KM+G GN  L++D             I+ AL+T  +T  D I+ +   Q       ++I
Sbjct: 6   TKMDGCGNSFLLVDEMKNPVPGFDRARISHALATQHDT--DGILYVDQQQGMPT---MKI 60

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            + DG+E   CGNG+RC  R+       +S  F  I G  + +   D            D
Sbjct: 61  FDRDGTEETMCGNGLRCATRYF-RDTYVRSNVFNIITGDGLKEVFVDNDCVEVNLGAARD 119

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
           ++ I                   ++++   P VV +G+  ++                  
Sbjct: 120 YRQI---------------DQNCHYVYTGVPHVVVIGSEISLETARAQGQSLRNDKSLCE 164

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
           L  H    EGVN++    T+   + LRT+E GV  +T +CG+ + AS   +  +   +  
Sbjct: 165 LVGH---PEGVNVNFIWRTTDSIITLRTFEVGVEDVTQSCGTGSAASAYVAAKVFGIDLP 221

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           +    LGG L I  +D   + ++G  +  ++GK+
Sbjct: 222 ILTHSLGGSLRIR-NDGGGLSISGPTR--YQGKV 252


>gi|304407413|ref|ZP_07389066.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
 gi|304343854|gb|EFM09695.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
          Length = 253

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 99/274 (36%), Gaps = 27/274 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           + F K E  GN  +V++    H           S       D +++     D++V   +R
Sbjct: 1   MQFWKFEAEGNSYIVVESSNLHAVDIP---AICSKRTGLSGDGLLVAEWLTDSTV--HMR 55

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           + N DG+E   CGNG RCV  F      +       I+       +R            +
Sbjct: 56  VFNADGTEAPMCGNGARCVAAFAYVNRPQLRDQDIVIKAQGATVTHRLAGEEGMKFNATI 115

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
            ++  PL   + +  R ++ +G  + + L +   V++ +   I+    D           
Sbjct: 116 RFERDPLINKYGEESRYQYVVGSPHLVILTDLEAVNLTHEGPIYEATFD----------- 164

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC-LHKTNR 244
                     G N+  A V     + +  WERGVG+   C + + A+ +A    +     
Sbjct: 165 ---------GGTNVMFASVVDRGVIRVLPWERGVGVVEGCATGSAAAAMAVALEMPDWPL 215

Query: 245 AVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEG 277
              V    G + +EW+  + V  M G      EG
Sbjct: 216 ESEVLTPQGCVRVEWNAMDKVLCMEGNVSLVAEG 249


>gi|154148142|ref|YP_001406080.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
 gi|153804151|gb|ABS51158.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381]
          Length = 247

 Score = 87.5 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 81/260 (31%), Gaps = 40/260 (15%)

Query: 34  AINALSTDDNTHFDQIMLIHDFQ---------------DASVDAFIRIINCDGSEVQSCG 78
           A    +       D +++I   +               +  +D      N DGS+   CG
Sbjct: 2   ARKICNHHKGIGADGLIVIIKNKSEISNKISSLILDLNNDKIDFAWDFYNSDGSKADMCG 61

Query: 79  NGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137
           NG R        +++  K+  F T  GI+ A+                           +
Sbjct: 62  NGSRAAALFAYENKIANKNMKFLTGAGIINAEICEINKHLAI----------------VE 105

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197
                                    G PH + FV+ DL  +++    NL           
Sbjct: 106 SELTKPVKKAENFSENGFLWSFYDTGVPHLVTFVK-DLNDFNIEVARNL-----RKKYNA 159

Query: 198 NLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256
           N++ A       L +RT+ERGV   T ACG+   A  +           V V    G +L
Sbjct: 160 NVNFASFKDE-ILRVRTYERGVEDETLACGTGMAACFITGVINFNLQNVVKVMPKSGEIL 218

Query: 257 IEWHDNNHVFMTGEAKKEWE 276
               +++ VF  G     ++
Sbjct: 219 YLRKNDDKVFFKGAVSHSFD 238


>gi|213612318|ref|ZP_03370144.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 55

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
          + F+KM G+GN  +V+D    +   + + I  LS       FDQ++++    D  
Sbjct: 1  MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPE 55


>gi|237750660|ref|ZP_04581140.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879]
 gi|229373750|gb|EEO24141.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879]
          Length = 267

 Score = 86.4 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 20/271 (7%)

Query: 9   AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD--FQDASVDAFIRI 66
           +K    GN  L+        N    A+   +       D ++++     +D+++      
Sbjct: 11  SKYCASGNDFLIFHSF-LEQNRAKMAVELCNRFYGIGADGMVVVLPYESKDSNIAYKWEF 69

Query: 67  INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126
            N DGS    CGN  R V  +              + G  +   +    I         +
Sbjct: 70  YNADGSFAGMCGNASRAVSLYAFHNKLATQNH-SFLSGAGIIDTSIKEIIDSKHAYVQSN 128

Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186
                     + ++  +  +    H+ +R P +V              +  ++L S    
Sbjct: 129 LGE--YVLQGNIVENKKGSVYEFEHIIMRIPHLVYFAT---------SMKEFNLLSNDLE 177

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245
              H       N++IA   + +   + T+ERGV  +T ACG+ ACA  V+     KT   
Sbjct: 178 FLSHLRHKYDANVNIAIRENDKIYYV-TFERGVENITQACGTGACAVYVSLRDFSKTY-- 234

Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
             +      L + ++ N  ++ +G   K  +
Sbjct: 235 TLIPPSKEKLQVSYN-NGLIYFSGLVTKVCD 264


>gi|307299383|ref|ZP_07579184.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915179|gb|EFN45565.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 238

 Score = 84.1 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 98/279 (35%), Gaps = 43/279 (15%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M+  A     GN  LV+D R    +     +  L   D    D  + +        D  +
Sbjct: 1   MMRGAYYTATGNTFLVVDSRERKLSDMEKRLLVLKYVDGR--DGAIFVER------DF-M 51

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
              NCDG+    CGNG R  V F+  + KR    F +  G ++ K +   S+ +      
Sbjct: 52  DYYNCDGNRAAFCGNGARTYVYFIHEKEKRNLVEFSSHAGNVLGKVDDLVSVRMPSPR-- 109

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
                                          +  +V +G PH +   + D          
Sbjct: 110 ---------------------FLGTFEEEDYSGEIVVVGVPHLVIEGDTD-------KVD 141

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243
                        N+++  V    SL +RT+ERGV   T ACGS A + V          
Sbjct: 142 WNALLPLRHLYDANINVFTVKKEGSLRIRTFERGVEGETGACGSGATSVVWLYSRRTGCE 201

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             V ++  GG L + +  +   ++ G  +K  E +L+++
Sbjct: 202 -KVILQANGGDLTVSFR-DGSAYLGGGVEKCSE-ELELQ 237


>gi|157364800|ref|YP_001471567.1| diaminopimelate epimerase [Thermotoga lettingae TMO]
 gi|157315404|gb|ABV34503.1| Diaminopimelate epimerase [Thermotoga lettingae TMO]
          Length = 240

 Score = 83.7 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 86/263 (32%), Gaps = 39/263 (14%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
               GN  L+ D       +  D    L  +  T  D  + +        D F+   N D
Sbjct: 6   YSANGNTFLIFDSMTNL--LGDDTKRDLILNYITDQDGAIFVEKS---GQDFFMDYFNRD 60

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPILDWKL 129
           G     CGNG R  V FL      K             K   +   ISV M  PI   K 
Sbjct: 61  GKRAIFCGNGARAFVAFLRDEGFLKDDHLIFHTKSGTLKGFIQKEKISVQMPGPIYLGKR 120

Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189
           +                     +      ++ +G  H +  V+  +   D+   G  L  
Sbjct: 121 V---------------------VEEFEGHLIRVGVLHFVLKVK-SVDRMDVIHEGKRLRA 158

Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV 248
                   N+   ++     + +RT+E+GV   T ACGS A A                V
Sbjct: 159 L----TDANIDFYQILEKNCVKMRTFEKGVERETKACGSGAAAVFSICQTDRLL-----V 209

Query: 249 KMLGGGLLIEWHDNNHVFMTGEA 271
           ++ GG L +  + +  +F+ GE 
Sbjct: 210 EVPGGILCVYINGD-SIFLQGEV 231


>gi|329942547|ref|ZP_08291357.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10]
 gi|332287178|ref|YP_004422079.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
 gi|313847775|emb|CBY16765.1| putative diaminopimelate epimerase [Chlamydophila psittaci RD1]
 gi|325507378|gb|ADZ19016.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
 gi|328815457|gb|EGF85445.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10]
          Length = 260

 Score = 83.3 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 114/275 (41%), Gaps = 34/275 (12%)

Query: 4   SMVDFAK---MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           SM+   K     G GN+ ++              I +L  +     D  +L+     ++ 
Sbjct: 7   SMI--YKHSVYSGAGNRFIL-----SETCPDITIIPSLCKEYQV--DGFLLVLPS--STA 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + I N DGS    CGNG+RCVV  L+  +K+   + ET  G    + +    + VDM
Sbjct: 56  DAKLIIFNDDGSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P  ++    L+ +   + R+               F +  G PH + FVE D+    +
Sbjct: 116 TLPDWNYTCHTLSHTLPGVPRE--------------VFSIHTGVPHLVVFVE-DVSCVPV 160

Query: 181 ASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASG 237
             +G+ L  H     +G N++  +        LRT+ERG+   +      A  A++V + 
Sbjct: 161 DLWGSFLRYHEDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAALVVAQ 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA 271
               +N  + +    G +LI+   + + V++ G  
Sbjct: 221 RYGLSNTQIPIWTW-GDILIKISLEGDRVYLEGPV 254


>gi|169836438|ref|ZP_02869626.1| Diaminopimelate epimerase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 193

 Score = 82.5 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 13/186 (6%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60
           M+ F K +G GN  +++  +   +    +    A    +       D ++++        
Sbjct: 1   MLKFEKYQGAGNDFVIVSEKELIEKGIPEYGEFASQVCNRHFGIGADGLIILKYVASMP- 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118
             F+   N DGS+   CGNG+RC   +      +    F  +T+ G L  + N D     
Sbjct: 60  --FMFFFNADGSQAPMCGNGIRCFSHYLVNNHLVDGNEFVVKTVPGDLTIRVNYDEEKDD 117

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI----FFVEDD 174
                 +   +  +    +                      + MG  H++     F + D
Sbjct: 118 FSARVNMGKPIFNIKELINTEKEQFLREKINIDGKEIEISYIFMGTDHSVIFVNDFSDYD 177

Query: 175 LYHYDL 180
           +  +  
Sbjct: 178 IDEFPF 183


>gi|328914425|gb|AEB55258.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC]
          Length = 253

 Score = 82.5 bits (202), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 29/265 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN+ ++              I +L  +     D  +L+     ++ DA + I N D
Sbjct: 8   YSGAGNRFIL-----SETCPDITIIPSLCKEYQV--DGFLLVLPS--STADAKLIIFNDD 58

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS    CGNG+RCVV  L+  +K+   + ET  G    + +    + VDM  P  ++   
Sbjct: 59  GSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDMTLPDWNYTCH 118

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L+ +   + R+               F +  G PH + FVE D+    +  +G+ L  H
Sbjct: 119 TLSHTLPGVPRE--------------VFSIHTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 163

Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNRAVS 247
                +G N++  +        LRT+ERG+   +      A  A++V +     +N  + 
Sbjct: 164 EDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAALVVAQRYGLSNTQIP 223

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEA 271
           +    G +LI+   + + V++ G  
Sbjct: 224 IWTW-GDILIKISLEGDRVYLEGPV 247


>gi|229094039|ref|ZP_04225124.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
 gi|228689350|gb|EEL43168.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42]
          Length = 119

 Score = 82.1 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 8   FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           F KM G+GN  + ++M           + ++ ++ +  +     D ++LI     A V  
Sbjct: 6   FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111
            +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+  
Sbjct: 62  KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVT 112


>gi|217032381|ref|ZP_03437876.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128]
 gi|216945948|gb|EEC24564.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128]
          Length = 159

 Score = 81.0 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 3/124 (2%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3   FYKYSGSGNDFLITQSFKKR-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68  NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
           N DGS+   CGN  RCV  F    +              ++    + +I           
Sbjct: 60  NSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119

Query: 128 KLIP 131
             IP
Sbjct: 120 DTIP 123


>gi|218459115|ref|ZP_03499206.1| diaminopimelate epimerase [Rhizobium etli Kim 5]
          Length = 124

 Score = 80.6 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 70/123 (56%), Positives = 91/123 (73%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   STTVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETAFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
           FI I+N DGS+ Q+CGNG RCVV+ L +   RK+FTF+T+ GIL A E+ DG+ISVDMG+
Sbjct: 62  FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 121

Query: 123 PIL 125
           P+ 
Sbjct: 122 PVF 124


>gi|294623973|ref|ZP_06702765.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601728|gb|EFF45673.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 132

 Score = 79.4 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221
             NPHA+  V   +    +   G LL  +  F + VN+  A V     + L  + R  G 
Sbjct: 17  WVNPHAVVEVGR-VDALPVERLGALLLHNSAFPDSVNVGFAHVVKPGHVRLLVYHRCFGE 75

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277
           T ACGS ACA+      L    R V V + GG L I W  +   V M+G A   ++G
Sbjct: 76  TLACGSGACAAAEVLMHLGHLERDVQVSLPGGELRIRWPGDQQQVVMSGPAVFVFDG 132


>gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 255

 Score = 78.7 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 34/266 (12%)

Query: 45  HFDQIMLI--------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
             D ++ +                   A  D ++   N DGS  Q CGNG+R    +L +
Sbjct: 2   GADGVLRVTTAGAALSAGVLDRLPDGVAPGDWYMDYRNADGSIAQMCGNGVRVFAHYLRA 61

Query: 91  RM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIG 147
                R  F   +  G      +R  +              I +     + +        
Sbjct: 62  SGMEGRDEFVVASAAGPRPVTVHRADA----------TRADITVDMGKANTLGSGGPAFE 111

Query: 148 PVNHLFLRNPFVVSMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205
                       V +GNPH   +           L     +   H  F EGVN+ +    
Sbjct: 112 ATVGGRRFAGLGVDVGNPHLACVDPALTADDLAGLDVAAPVSFDHAQFPEGVNIEVLTAP 171

Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNH 264
           +  ++ +R  ERGVG T +CG+   A+ VA+     T+   ++V++ GG +++   D   
Sbjct: 172 ADGAVRMRVHERGVGETRSCGTGTVAAAVAALAAAGTDTGTLAVRVPGGEVVVTVTDATS 231

Query: 265 VFMTGEAKKEWEGKLDIKTGKWIKKN 290
            ++ G +     G++   +G+W    
Sbjct: 232 -YLRGPSVLVAHGEV---SGEWWDAQ 253


>gi|29839993|ref|NP_829099.1| diaminopimelate epimerase [Chlamydophila caviae GPIC]
 gi|29834340|gb|AAP04977.1| diaminopimelate epimerase [Chlamydophila caviae GPIC]
          Length = 260

 Score = 77.1 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 29/267 (10%)

Query: 11  MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             G GN  ++     C +  T   I+AL  ++    D  +L+     A  DA + I N D
Sbjct: 15  YSGAGNCFIL--SETCPEITT---ISALCKEEQV--DGFLLVLPSSVA--DAKLIIFNDD 65

Query: 71  GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
           GS  + CGNG+RCV+  L+S +K++  + ET  GI   K      + VDM  P   ++  
Sbjct: 66  GSRPKMCGNGLRCVIAHLSSVLKKEDISVETDSGIYFGKFYSWNRVVVDMTLPDWKYRCH 125

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
            L  +  ++ ++               F ++ G PH + FV+ D+    +  +G+ L  H
Sbjct: 126 NLTYTIAQLPQEI--------------FSINTGVPHLVVFVD-DVSCIPIDLWGSFLRYH 170

Query: 191 -PMFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNRAVS 247
                EG N++     S     +RT+ERG+   +      A  A++V +     +N  + 
Sbjct: 171 ADFSPEGANVNFIEAMSSREFRIRTYERGLERESLACGTGATAAALVVAKRYGLSNIQIP 230

Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKK 273
           ++     ++I    D + V++ G   K
Sbjct: 231 IRTWS-NIVINISLDRDRVYLEGPVNK 256


>gi|255521593|ref|ZP_05388830.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175]
          Length = 248

 Score = 77.1 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 13/233 (5%)

Query: 77  CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           CGNG+R V R+L  +        ET++ IL  K+       +   +  +           
Sbjct: 1   CGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATSLGFDIPTYQVEISPVKFAAETLP 60

Query: 137 DKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL-YHYDLASFGNL-LAKHPMF 193
             +  ++     +  L     F  VS+ NPH I FV+  +          +   +++P F
Sbjct: 61  MHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYF 120

Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKML 251
            +GVN+S  +  S +++ +RT+ERGVG T ACG+A  A  +    L        ++V   
Sbjct: 121 PDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLNVYND 180

Query: 252 GGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKTGKWIKKNEDDEAY 296
           GG + +    +    +   + G A    +G +    D+ T    +   +   Y
Sbjct: 181 GGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYENDVVTELTNEATAEQGQY 233


>gi|297521540|ref|ZP_06939926.1| diaminopimelate epimerase [Escherichia coli OP50]
          Length = 56

 Score = 76.7 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           S ACA+V            V V++ GG L I W    H ++MTG A   ++G + +
Sbjct: 1   SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 56


>gi|207109146|ref|ZP_03243308.1| diaminopimelate epimerase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 92

 Score = 76.7 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 8  FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
          F K  G GN  L+        + ++ A       +    D ++++   +D   D      
Sbjct: 3  FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59

Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99
          N DGS+   CGN  RCV  F            
Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHV 91


>gi|116335080|ref|YP_802575.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV]
 gi|116235361|dbj|BAF35209.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV]
          Length = 251

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 100/265 (37%), Gaps = 26/265 (9%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           M  F K+   GN  L+   +     I+      ++       DQI++I           I
Sbjct: 1   MYKFLKLHSCGNDFLIFFKKVNDFLISK----FINKKSGITCDQILIIKKIILDKNIIKI 56

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA-KENRDGSISVDMGEP 123
            IIN + S   +CGNG+R +  F   + K  S     ++   +   +N+  +I      P
Sbjct: 57  EIINNNLSRANNCGNGIRSLSWFFLKKKKTNSIIKFPVKNNFILSYKNKKKNIISFFKIP 116

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
               K+I          R  F+      + L N   +++           ++  Y L  F
Sbjct: 117 NFFKKII---------LRIEFYFLKSGFVELNNLHFITI---------IKNIKTYYL--F 156

Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
                 +  F+  VN+   ++       +R +E+GVG T +CG+   +S      ++K  
Sbjct: 157 FFYNKINFFFNNIVNIEFIQIVKNNEFYIRIFEKGVGETYSCGTGIISSCYYINNINKKI 216

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMT 268
              +V  LGG   I +  +  + +T
Sbjct: 217 NLFNVYSLGGFSKISFF-DKFIILT 240


>gi|89898587|ref|YP_515697.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56]
 gi|89331959|dbj|BAE81552.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56]
          Length = 272

 Score = 75.6 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 27/263 (10%)

Query: 13  GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
           G GN+ ++              I  L  +     D  + +     A  DA + I N DGS
Sbjct: 26  GAGNRFIL-----SEACPDITMIPNLCREHQV--DGFLHVLPSSIA--DAKLIIFNDDGS 76

Query: 73  EVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
               CGNG+RCV+ +L+S ++++  + ET  G+   K      + VDM  P   ++   L
Sbjct: 77  RPNMCGNGLRCVIAYLSSVLEKEEISVETDSGVYSGKFYSWDRVVVDMTLPNWKYRSHQL 136

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP- 191
             +   + ++               F +  G PH I FVE DL    +  +G+ L  H  
Sbjct: 137 THTLSDLPKE--------------VFSIDTGVPHVIVFVE-DLSSVPVNLWGSFLRYHED 181

Query: 192 MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNRAVSVK 249
              +G N++  +      + +RT+ERG+   +      A  A++V +     +N  + + 
Sbjct: 182 FAPQGTNVNFVQAQDFREIHMRTYERGLERESLACGTGATAAALVLAKRYGLSNTKIHIW 241

Query: 250 MLGGGLLIEWHDNNHVFMTGEAK 272
                L+    D++ V++ G   
Sbjct: 242 TWNRILIKISLDSDRVYLEGPVA 264


>gi|62184865|ref|YP_219650.1| diaminopimelate epimerase [Chlamydophila abortus S26/3]
 gi|62147932|emb|CAH63679.1| putative diaminopimelate epimerase [Chlamydophila abortus S26/3]
          Length = 260

 Score = 75.2 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 32/272 (11%)

Query: 4   SMVDFAK---MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           SM+   K     G GN+ ++              + +L  +     D  +L+     A  
Sbjct: 7   SMI--YKPSLYSGAGNRFIL-----SETCPDMTILPSLCKEYQV--DGFLLVLPSSVA-- 55

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA + I N +GS    CGNG+RCV+  ++   K+     ET  GI   +      + VDM
Sbjct: 56  DAKLIIFNDNGSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGRFESWERVIVDM 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P   +    L+ +   + ++               F ++ G PH + FVE D+    +
Sbjct: 116 TLPDWHYTRHLLSHTLPGVPKE--------------VFSINTGVPHLVVFVE-DVSCVPV 160

Query: 181 ASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASG 237
             +G+ L  H     +G N++  +  S     +RT+ERG+   +      A  A++V + 
Sbjct: 161 DLWGSFLRYHEDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAALVVAR 220

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269
               +N  + ++     L+    D++ V++ G
Sbjct: 221 RYGLSNTQIRIRTWSDVLMKISLDSDRVYLEG 252


>gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 231

 Score = 74.4 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 12/240 (5%)

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
               A+ D ++   N DGS  Q CGNG+R    +L +         ET    +V      
Sbjct: 1   PDGVAAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASG------LETRDEFVVGSLAGP 54

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
             ++V   +       + + ++       +     V         V       A    E 
Sbjct: 55  RPVTVHAADATGADVSVDMGKANTLGSGGKAFEATVGGRRFAGLAVDVGNPHLACLDPEL 114

Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
            +           ++     F +GVN+ +    +   + +R  ERGVG T +CG+   A+
Sbjct: 115 SVDELAALDVAAPVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAA 174

Query: 233 VVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291
            VA+      +   ++V++ GG +++   D    ++ G +     G++   + +W ++ +
Sbjct: 175 AVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEWWQQAQ 230


>gi|326445010|ref|ZP_08219744.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064]
          Length = 123

 Score = 74.0 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKML 251
           +  G  +          L LR  ERG G T +CG+ ACA+V A+            V   
Sbjct: 7   YPHGTFVEFVVRRGPRHLALRVHERGAGETRSCGTGACAAVAAATHHTVPEPGTWIVDTP 66

Query: 252 GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
           GG L +  H +  + +TG A+    G + +  G+
Sbjct: 67  GGRLTVTVHLDGTMALTGPAEITTHGTITLPRGE 100


>gi|297613370|ref|NP_001067060.2| Os12g0567200 [Oryza sativa Japonica Group]
 gi|255670404|dbj|BAF30079.2| Os12g0567200 [Oryza sativa Japonica Group]
          Length = 68

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           VG T ACG+ ACA VVA+    +  R   V + GG L IEW + +NH++MTG A+  + G
Sbjct: 5   VGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 64

Query: 278 K 278
            
Sbjct: 65  S 65


>gi|313607796|gb|EFR83994.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-208]
          Length = 168

 Score = 73.3 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 12/152 (7%)

Query: 157 PFVVSMGNPHAIFFVEDDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRT 214
              VS+ NPH I FV+  +          +   +++P F +GVN+S  +  + +++ +RT
Sbjct: 2   FSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLNDDAIYVRT 61

Query: 215 WERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MT 268
           +ERGVG T ACG+A  A  +    L        ++V   GG + +   ++    +   + 
Sbjct: 62  FERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLI 121

Query: 269 GEAKKEWEGKL----DIKTGKWIKKNEDDEAY 296
           G A    +G +    DI T    +   +   Y
Sbjct: 122 GNATFVSKGSVRYENDIVTELTNEATAEQAQY 153


>gi|260655345|ref|ZP_05860833.1| diaminopimelate epimerase family protein [Jonquetella anthropi
           E3_33 E1]
 gi|260629793|gb|EEX47987.1| diaminopimelate epimerase family protein [Jonquetella anthropi
           E3_33 E1]
          Length = 257

 Score = 71.7 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 71/291 (24%), Gaps = 42/291 (14%)

Query: 6   VDFAKMEGIGN------KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           VDF K+   GN        +          +       L + D+   +Q+  +     + 
Sbjct: 3   VDFVKVNPAGNVTIFVTSFV-------PVELQPAVAKELMSSDHVGGEQVGFV-----SG 50

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
               +          + CGN  R +               E   G      +  G  S  
Sbjct: 51  RRLRMAG-------GEFCGNATRSLAALWAFE--------EGTTGPAQYTVDVSGVTSPI 95

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
                 +   +P     D +         V+        V   G  H +     D     
Sbjct: 96  QVTVQAEG--MPGVFRADVLMPQPLGQDEVSLEGYAAFRVDFGGIVHYVVEGAPDEKVIS 153

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
            A       +     +   +   +        +           +C S + A        
Sbjct: 154 AARTQMGYGRW----DAFGVMFLQG-DRLDPYVEVNGVSGMWENSCASGSSAVACLLQSR 208

Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290
               R  S++  GG L + W     V ++G       G+  +    W +  
Sbjct: 209 TPKGR-ASLRQPGGTLSVSWDGRG-VLLSGPVAIVARGEAFLSELSWEEAG 257


>gi|315283053|ref|ZP_07871329.1| diaminopimelate epimerase [Listeria marthii FSL S4-120]
 gi|313613312|gb|EFR87180.1| diaminopimelate epimerase [Listeria marthii FSL S4-120]
          Length = 184

 Score = 70.2 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL-YHYDLASFGNL-LAKHPMFSEGVN 198
              F+              VS+ NPH I FV+  +          +   +++P F +GVN
Sbjct: 2   EKLFNQVVPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVN 61

Query: 199 LSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLL 256
           +S  +    +++ +RT+ERGVG T ACG+A  A  +    L        ++V   GG + 
Sbjct: 62  VSFVKRLRDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQ 121

Query: 257 IEWHDNN----HVFMTGEAKKEWEGKL----DIKTGKWIKKNEDDEAY 296
           +    +      + + G A     G +    +I T    +   +   Y
Sbjct: 122 VTAKKDETGEISLQLIGNATFVSNGSVRYDNEIVTELTNEATSEQAKY 169


>gi|255523491|ref|ZP_05390459.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512748|gb|EET89020.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 74

 Score = 70.2 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 8  FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66
          F K  G+GN+ +V++    + ++T  AI  +   +     D I+L    Q    D  ++I
Sbjct: 6  FVKTHGLGNEYIVLNEEKINFSLTQKAIKRICNVNFGIGSDGILL--KVQSNKADFGLKI 63

Query: 67 INCDGSEVQSC 77
           N DGSE +  
Sbjct: 64 FNPDGSEAEKS 74


>gi|66735101|gb|AAY53793.1| putative diaminopimelate epimerase [Campylobacter jejuni]
          Length = 182

 Score = 69.8 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 31/208 (14%)

Query: 76  SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
            CGNG R    F     K   + +F T  G++ AK N+                 + ++ 
Sbjct: 1   MCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQ---------------DKVEVSL 45

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
              K  ++ F          +   + + G PH + F ++      L  F  +L +     
Sbjct: 46  GKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQN------LDEFDTMLCQKMRQK 93

Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253
              N++  ++     L +RT+ERGV   T ACG+   A    +    K    V +    G
Sbjct: 94  YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153

Query: 254 GLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              + +   N  +F  G+ K  +E   +
Sbjct: 154 E-EVGFAYKNEELFFEGKVKYCFEANYN 180


>gi|205356636|ref|ZP_03223398.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345493|gb|EDZ32134.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 182

 Score = 68.3 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 31/208 (14%)

Query: 76  SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
            CGNG R    F     K   + +F T  GI+ AK N+                 + ++ 
Sbjct: 1   MCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ---------------DKVEVSL 45

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
              K  ++ F          +   +   G PH + F ++      L  F  +L +     
Sbjct: 46  GKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQN------LDEFDTILCQKMRQK 93

Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253
              N++  ++     L +RT+ERGV   T ACG+   A    +    K    V +    G
Sbjct: 94  YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153

Query: 254 GLLIEWH-DNNHVFMTGEAKKEWEGKLD 280
              + +   N  +F  G+ K  +E   +
Sbjct: 154 E-KVGFTYKNEELFFEGKVKYCFEANYN 180


>gi|330976603|gb|EGH76647.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 52

 Score = 67.9 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
           A+ VA+      +  + + + GG L IEW    H V MTG A + +EG++ +
Sbjct: 1   AAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 52


>gi|218670599|ref|ZP_03520270.1| diaminopimelate epimerase [Rhizobium etli GR56]
          Length = 138

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 3   SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62
           S+ V+FA+M G+GNKILV+DMRG  D +T+ A  AL+ D  T FDQIM IHD +    DA
Sbjct: 2   SATVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETEFDQIMAIHDPKADGTDA 61

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV--AKENRDGSISVDM 120
           FI I+N DGS+ Q+CG            R + K          ++   +      +  DM
Sbjct: 62  FIDILNSDGSKAQACGKRHTLRRAGACRRNRPKGLHLPGRSPGILNAVEHEGRDDLPSDM 121

Query: 121 GEPILDWKLIP 131
           G+P+ DW   P
Sbjct: 122 GKPVFDWGQDP 132


>gi|254303513|ref|ZP_04970871.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323705|gb|EDK88955.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 264

 Score = 64.0 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 26/280 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I        D+ ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIK-------DSHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K                    G  SV   +  +
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------AFSKQKNYSITCSGESSVLDVDVRI 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      V+   L        G  H IF ++++           
Sbjct: 109 DGAQNKFLAKIKMPKFISLEEINVDEYKLGLVRF--SGINHFIFNIKENKETSFENIIDL 166

Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
           +              +       S+   +   E G G    +C S   A           
Sbjct: 167 VKKCLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +R   +    G L     +N+ +++ G  +   EGK+ IK
Sbjct: 227 DR-AKIVQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264


>gi|237738947|ref|ZP_04569428.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31]
 gi|229423547|gb|EEO38594.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31]
          Length = 258

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 24/278 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I        D  ++
Sbjct: 3   LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNHLQ 55

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K       T     + K    G   V   +   
Sbjct: 56  MMGGE-----FCGNASRAFASLLAFRDK-------TFSKQKIYKITCSGEDEVLAVDVRE 103

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA-IFFVEDDLYHYDLASFG 184
                                  +++  L       +G+    I   ++D +   + S  
Sbjct: 104 GQTENSFLAKIKMPKFKSLEELKIDNYKLGLVKFSGIGHFIFDIAKNKEDNFEKVIDSVK 163

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESL-DLRTWERGVGLTAACGSAACASVVASGCLHKTN 243
           N L+     + G+        S++    ++  E G+    +C S   A           +
Sbjct: 164 NYLSDKDFSAFGIMFFDRENLSMKPYVYVKEVESGIFE-NSCASGTTALGYYLKKYKNLD 222

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           R   +    G L     +N+ +++ G  +   EGK+ I
Sbjct: 223 R-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKVYI 258


>gi|260495528|ref|ZP_05815653.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33]
 gi|260196870|gb|EEW94392.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33]
          Length = 265

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 26/279 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K                    G  SV   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYSITCSGESSVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      ++   L        G  H IF ++++           
Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRF--SGINHFIFNIKENKETSFENIIDL 166

Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
           +              +       S+   +   E G G    +C S   A           
Sbjct: 167 VKKYLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +R   +    G L     +N+ +++ G  +   EG++ I
Sbjct: 227 DR-AKIIQPNGWLE-YIIENDEIYIDGPVEIVAEGEVYI 263


>gi|19705053|ref|NP_602548.1| hypothetical protein FN1732 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712971|gb|AAL93847.1| Hypothetical protein FN1732 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 265

 Score = 63.6 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 86/278 (30%), Gaps = 24/278 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I        D+ ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIK-------DSHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
           ++  +      CGN  R                    I     +K       +       
Sbjct: 61  MMGGE-----FCGNASRAFASLLAFRDKDFSKQKNYNITCSGESKVLDVDVRNDGAKNKF 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L    +P   S ++++ D + +G V    + +       N    F    DL    +  + 
Sbjct: 116 LAKIKMPKFLSLEEINVDEYKLGLVRFSGINHFIFNIKENKETSFENIIDL----VKKYL 171

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243
           +            +     +       +   E G G    +C S   A           +
Sbjct: 172 SNEEYSAFGIMFFDSDNLSMKP----YVYVKEVGSGVYENSCASGTTALGYYLKKCKNLD 227

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           R   +    G L     +N+ +++ G  +   EGK+ I
Sbjct: 228 R-AKIVQPNGWLE-YIIENDEMYIDGPVEIIAEGKIYI 263


>gi|294784032|ref|ZP_06749354.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479844|gb|EFG27623.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 262

 Score = 63.6 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 86/282 (30%), Gaps = 30/282 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I        D  ++
Sbjct: 3   LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNHLQ 55

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K             + K    G   +   +   
Sbjct: 56  MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKIYKITCSGEDEILAVDVRE 103

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                                  +++  L        G  H IF V ++          +
Sbjct: 104 GQTENSFLAKIKMPKFKSLEELKIDNYKLGLVKF--SGIDHFIFDVAENKEDNF-EKVID 160

Query: 186 LLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +  +    +     I             + ++  E G+    +C S   A         
Sbjct: 161 SVKNYLSDKDFSAFGIMFFDRQNLSMKPYVYVKDIESGIFE-NSCASGTTALGYYLKKYK 219

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
             +R   +    G L     +N+ +++ G  +   EGK+ I+
Sbjct: 220 NLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKVYIQ 259


>gi|262066039|ref|ZP_06025651.1| putative diaminopimelate epimerase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380290|gb|EFE87808.1| putative diaminopimelate epimerase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 261

 Score = 63.3 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 84/284 (29%), Gaps = 30/284 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D   +     L  +DN H +Q+  I +           
Sbjct: 3   LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKN----------N 52

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
            +   G E   CGN  R     L  R K       T     + K    G   V   +   
Sbjct: 53  HLQMMGGE--FCGNASRAFASLLAFRDK-------TFSKQKIYKITCSGEDEVLNVDIRE 103

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                                  ++   L        G  H IF + ++          +
Sbjct: 104 GQTENSFLAKIKMPKFKSLEEIKIDSYKLGLVKF--SGIDHFIFDIAENKEDNF-EKIID 160

Query: 186 LLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSAACASVVASGCLH 240
            +  +    +     I             + ++  E G+    +C S   A         
Sbjct: 161 SVKNYLSDKDFSAFGIMFFDKENLFMKPYVYVKEVESGIFE-NSCASGTTALGYYLKKYK 219

Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             +R   +    G L     +N+ +++ G  +   EG + +K G
Sbjct: 220 NLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGSVYVKRG 261


>gi|296329315|ref|ZP_06871816.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153671|gb|EFG94488.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 263

 Score = 62.9 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 86/277 (31%), Gaps = 22/277 (7%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I +          +
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKE----------K 57

Query: 66  IINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
            +   G E   CGN  R                   +I     ++       +       
Sbjct: 58  HLQMMGGE--FCGNASRSFASLLAFRDKDFSEQKNYSITCSGESEVLDVDVRTDGAKNKF 115

Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           L    +P   S +++  D + +G V    + +       N    F    DL    L++  
Sbjct: 116 LAKIKMPKFISLEEISIDEYKLGLVRFSGISHFIFNIKENKETSFENIIDLVKKYLSNED 175

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244
                   F +              + ++  E G+    +C S   A           +R
Sbjct: 176 YSAFGIMFFDKDNLSM------KPYVYVKELESGI-YENSCASGTTALGYYLKKYKNLDR 228

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              V    G L     +N+ +++ G  +   EGK+ I
Sbjct: 229 -AKVVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263


>gi|237743006|ref|ZP_04573487.1| diaminopimelate epimerase [Fusobacterium sp. 7_1]
 gi|229433566|gb|EEO43778.1| diaminopimelate epimerase [Fusobacterium sp. 7_1]
          Length = 264

 Score = 62.1 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 26/280 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K                    G  SV   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYSITCSGESSVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      ++   L        G  H IF ++++           
Sbjct: 109 DEAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRF--SGINHFIFNIKENKETNFENIIDL 166

Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
           +              +       S+   +   E G G    +C S   A           
Sbjct: 167 VKKYLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +R   +    G L     +N+ +++ G  +   EGK+ IK
Sbjct: 227 DR-AKIIQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264


>gi|1149634|emb|CAA60229.1| dapF [Clostridium perfringens]
          Length = 61

 Score = 60.6 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246
             K+ +F +G N++  +V     +++R WERG G T ACG+  CASV+A+  L   ++ V
Sbjct: 2   YRKYDLFPQGTNVNSCKVIDRNPMEVRPWERGAGPTLACGTGNCASVIAANNLGLVDKEV 61


>gi|256028327|ref|ZP_05442161.1| hypothetical protein PrD11_10087 [Fusobacterium sp. D11]
 gi|289766253|ref|ZP_06525631.1| diaminopimelate epimerase [Fusobacterium sp. D11]
 gi|289717808|gb|EFD81820.1| diaminopimelate epimerase [Fusobacterium sp. D11]
          Length = 265

 Score = 60.2 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 26/279 (9%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K                    G  SV   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSEQKNYSITCSGESSVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +                      ++   L        G  H IF ++++           
Sbjct: 109 NGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRF--SGINHFIFNIKENKETNFENIIDL 166

Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242
           +              +       S+   +   E G G    +C S   A           
Sbjct: 167 VKKYLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226

Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +R   +    G L     +N+ +++ G  +   EGK+ I
Sbjct: 227 DR-AKIVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263


>gi|256829396|ref|YP_003158124.1| hypothetical protein Dbac_1615 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578572|gb|ACU89708.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 271

 Score = 59.4 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 81/289 (28%), Gaps = 32/289 (11%)

Query: 1   MQSSMVDFAKMEGIGN-KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
           M++  + F K    GN  IL++D         +     L   ++   +Q+  +    D  
Sbjct: 1   MRT--LRFYKASPGGNATILILDAV--PPGQRAQLARLLMDANHLQAEQVGFLDLGADP- 55

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
               + ++  +      CGN  R     +       +   E +RG L             
Sbjct: 56  --VRLDMMGGE-----FCGNACRAAAAVMAREGVGLARIGEELRGELRVSGVDRPVALRV 108

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY--- 176
             +    W  +PL  S D    D           +R P +  +     +    +D     
Sbjct: 109 AADGYECWVEMPLPVSSDVGRHDWISELEPGLGLVRLPGITHLCLDEELHPFAEDFESAC 168

Query: 177 -----HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231
                 + L         +          +  V S        +E G      CGS + A
Sbjct: 169 AALRAKFGLDEEAVGCLWYRTSPTCAIKPVVWVRS---TASTHYETG------CGSGSLA 219

Query: 232 SVVASGCLHKTNRAVSVKMLGG-GLLIEWHDNNH-VFMTGEAKKEWEGK 278
             +  G        + V    G  + +    +   V++ G       G+
Sbjct: 220 LALWLGRGKNLPTDLRVLQPSGSEIGVRADGDGPGVWIFGPVTLVARGE 268


>gi|242372515|ref|ZP_04818089.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1]
 gi|242349732|gb|EES41333.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score = 59.0 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 31/293 (10%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M   +++F+K    GN  +++  +   +   + A   ++T  +   +Q+  I      + 
Sbjct: 1   MHRQVIEFSKYNPSGNMTILVHSKHHPNEYATIANQLMAT-THVCCEQVGFIESTNHNN- 58

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSI 116
                  +   S  + CGN     + +L         +          ++  K +     
Sbjct: 59  ---WETYHLVMSGNEFCGNATMSYIHYLQEHQLLQHSQCQLKVSGYSQLVPCKVHNHRCY 115

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG--NPHAIFFVEDD 174
            V M +         +         +  +   ++ +       VS        +     +
Sbjct: 116 EVGMPQVQQITPRQLVIAGQLYHVLELTYESYIHFVVPTQDISVSFKKQVEQFVRTQRWN 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           + +  +        +  +        +  +          WE       +CGS A +  V
Sbjct: 176 VNYKTIGVMLFDTQQQFLQPLIYIPEVQSLI---------WE------NSCGSGAASIGV 220

Query: 235 A-SGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-FMT---GEAKKEWEGKLDIK 282
                 ++ +    V   GG +L+    N  + ++T   G+      G+  I+
Sbjct: 221 FQQYRTNQASNDFKVNQPGGSILVSSTFNEQMGYLTSIKGQVSTVATGQAYIE 273


>gi|157497162|gb|ABV58325.1| diaminopimelate epimerase [Wolbachia endosymbiont of Dirofilaria
           immitis]
          Length = 106

 Score = 58.6 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 45  HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIR 103
             DQ+++I     ++ D F+ I N DGS+V+ CGN  RCV          +  T E    
Sbjct: 15  GCDQVIVI--TDSSTADCFMHIYNADGSKVEMCGNAARCVGYLTMLEKDTEYATIELVNN 72

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137
            IL   +  D  I V+MG+P+L W  IPL+   +
Sbjct: 73  RILECFKVSDKFIKVNMGKPLLKWHEIPLSIECN 106


>gi|256846137|ref|ZP_05551595.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2]
 gi|256719696|gb|EEU33251.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2]
          Length = 265

 Score = 57.9 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 77/275 (28%), Gaps = 22/275 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K                    G   V   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSEQKNYSITCSGENEVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      ++   L       + +         +L   ++     
Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRFSGINHFIFNIKENKELSFENIIDLVK 168

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
               +  +S    +   R        +   E G G    +C S   A           +R
Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +    G L     +NN +++ G  +   EGK+
Sbjct: 229 -AKIIQPNGWLE-YIIENNEIYIDGPVEIIAEGKV 261


>gi|319400468|gb|EFV88702.1| diaminopimelate epimerase [Staphylococcus epidermidis FRI909]
          Length = 279

 Score = 57.5 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 24/289 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D +  +++ +      CGN     + +L  R+  +   F+               +    
Sbjct: 60  DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECK--VHSQH 113

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            E  +  K+  +   F K+   +F    +++    +  ++  G   A+    +D      
Sbjct: 114 YEVTM-PKVHQVKERFVKLGDQQFKAFEISYDTYIHYVLMCDGVDLAMKQRVEDFVSAQT 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
                      +F +     I  +  +  +D   WE       +CGS A +  V      
Sbjct: 173 WHQQFKTIGVMLFQQDKQF-IYPLIHIPKIDSLIWE------NSCGSGAASIGVLVNY-- 223

Query: 241 KTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
            T+  +    V   GG +++    +        + G+      G+  I+
Sbjct: 224 LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|329732780|gb|EGG69128.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU028]
          Length = 279

 Score = 56.7 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119
           D +  +++ +      CGN     + +L  R+  +   F+    G     E +  S   +
Sbjct: 60  DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P +        +  ++  +           ++     V +     +           
Sbjct: 116 VTMPKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQCVE------DFVS 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
             ++        +     +         + ++D   WE       +CGS A +  V    
Sbjct: 170 AQTWHRQFKTIGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY 223

Query: 239 LHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
              T+  +    V   GG +++    +        + G+      G+  I+
Sbjct: 224 --LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|315647127|ref|ZP_07900240.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453]
 gi|315277329|gb|EFU40658.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453]
          Length = 293

 Score = 56.3 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 43/291 (14%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD----DNTHFDQIMLIHDFQDASVD 61
           +DF K     N  ++I        +  D    ++      DN + +Q+  I  F+  + D
Sbjct: 5   IDFVKCNPTQNMTVLI-----KSKLPPDDYKVIAAKIMSYDNVYAEQVGFIEPFRKENAD 59

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDM 120
           A + +   +      CGN    +  +L +        T E    +   +      I+ + 
Sbjct: 60  ARLHMAGGE-----FCGNACMALAAYLANEQGLNQNETTELHLQVSGVERLVTCRITKNS 114

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
           G+       +PL  + ++   +       +     +  VV   +        +D+     
Sbjct: 115 GDYQCQV-DMPLPLTIEQTVLN-------DGSDSYDMIVVRYSDFVHFVIEVEDIDTEMK 166

Query: 181 ASFGNLLAKH----------PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
               NL+              +        +A +  +  LD   WERG      CGS   
Sbjct: 167 RKMLNLVKLIGPLLDTKMLGILLYNIRTSELAPLIYVSDLDSAVWERG------CGSGTA 220

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEG 277
           +        ++ +   +++  GG + +    +      + + G      +G
Sbjct: 221 SVGAYLAWKNQKSMEAAIQQPGGTIQVRAFYDQERLTQLEIEGNVGIVAQG 271


>gi|329732095|gb|EGG68449.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU144]
          Length = 279

 Score = 55.9 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 28/291 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119
           D +  +++ +      CGN     + +L  R+  +   F+    G     E +  S   +
Sbjct: 60  DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P +             +             +      V M +   +   +       
Sbjct: 116 VTMPKVH------QVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQRVEDFVS 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
             ++        +     +         + ++D   WE       +CGS A +  V    
Sbjct: 170 AQTWHRQFKTIGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY 223

Query: 239 LHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
              T+  +    V   GG +L+    +        + G+      G+  I+
Sbjct: 224 --LTDHDIQDYLVNQPGGSILVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|293367479|ref|ZP_06614137.1| diaminopimelate epimerase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318425|gb|EFE58813.1| diaminopimelate epimerase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 279

 Score = 55.9 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 90/290 (31%), Gaps = 26/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119
           D +  +++ +      CGN     + +L  R+  +   F+    G     E +  S   +
Sbjct: 60  DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P +        +  ++  +           ++     V +     +         + 
Sbjct: 116 VTMPKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQCVEDFVSAQTWHR 175

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239
                 ++   P       L               WE       +CGS A +  V     
Sbjct: 176 QFKTIGVMLFQPDKQFIYPLIHIPAIDS-----LIWE------NSCGSGAASIGVLVNY- 223

Query: 240 HKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
             T+  +    V   GG +++    +        + G+      G+  I+
Sbjct: 224 -LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|294784733|ref|ZP_06750021.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294486447|gb|EFG33809.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 265

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 78/275 (28%), Gaps = 22/275 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    +D         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYDKNIPKISEEIMKETNLYAEQVGFI-------GDNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K               K    G  SV   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYKITCSGESSVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      ++   L       + +         ++   ++ +   
Sbjct: 109 DGAKNKFLAKIKMPKFISLEKIKIDGYKLGLVRFSGISHFIFNIKENKEVSFENIINLVK 168

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
               +  +S    +   R        +   E G G    +C S   A           +R
Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +    G L      N+ + + G  +   EGK+
Sbjct: 229 -AKIIQPNGWLE-YIIKNDEMCIDGPVEIIAEGKV 261


>gi|27467119|ref|NP_763756.1| diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228]
 gi|27314661|gb|AAO03798.1|AE016744_201 diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228]
          Length = 279

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 24/289 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D +  +++ +      CGN     + +L  R+  +   F+               +    
Sbjct: 60  DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECK--VHSQH 113

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            E  +  K+  +   F K+   +F    +++    +  ++      AI    +D      
Sbjct: 114 YEVTM-PKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQRVEDFVSAQT 172

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
                      +F +     I  +  + ++D   WE       +CGS A +  V      
Sbjct: 173 WHRQFKTIGIMLFQQNKQF-IYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY-- 223

Query: 241 KTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
            T+  +    V   GG +++    +        + G+      G+  I+
Sbjct: 224 LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|237742813|ref|ZP_04573294.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13]
 gi|229430461|gb|EEO40673.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13]
          Length = 265

 Score = 55.2 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 22/275 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K++  GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKIDPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K               K    G  SV   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYKITCSGESSVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      ++   L       + +         ++   ++     
Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRFSGINHFIFNIKENKEVSFENIIDLVK 168

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
               +  +S    +   R        +   E G G    +C S   A           +R
Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +    G L     +N+ + + G  +   EGK+
Sbjct: 229 -AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261


>gi|312960043|ref|ZP_07774556.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
 gi|311285700|gb|EFQ64268.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
          Length = 339

 Score = 54.8 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 107/331 (32%), Gaps = 67/331 (20%)

Query: 3   SSMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNT--------------- 44
           + M  F   +  GN   V++    R    ++   A +A  T                   
Sbjct: 10  TPMTLF--YDARGNIYAVVNPAALRHQGIDVPDSAASAARTRKAWAASAIAAECEWGETP 67

Query: 45  --------HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MK 93
                     D +++      A     + I+N DGS  +  GNG+    + LT +     
Sbjct: 68  HPAEGKAHRCDGLLV--GPFQAQPPFDLLIVNTDGSLAERSGNGLTIFAQALTDQGLMTD 125

Query: 94  RKSFTFETIRGILV---------AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144
                    +   V         A   +     + +G P      +  A+  D++  D  
Sbjct: 126 GCELRVHHDQPDGVSPVATWVEPAVFEQVAGFWLALGPPAFGPSAVG-AKDVDQVLLDTT 184

Query: 145 HIGPVNHLFLRNPF-----VVSMGNPHAIFFVED-----DLYHYDLASFGNLLAKHPMFS 194
            +  V+ L   +P       V +GNPH +  VE      D      ++    L       
Sbjct: 185 ELSHVSALAAIDPHWAHSQFVRVGNPHCVTLVEQASALPDNSQMQRSALFEALQAIAFAP 244

Query: 195 E---------GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR- 244
                     G+NL  A       +  R +ERG G TA+ G++A A   A+         
Sbjct: 245 PAGSGQPCVAGINLQWAAQQPGNRVVARVFERGEGPTASSGTSASAVACAAWRAGWVEAG 304

Query: 245 AVSVKMLGG--GLLIEWHDNN--HVFMTGEA 271
            V+V M GG   + +   D+    V + G A
Sbjct: 305 EVAVVMPGGIAPVRLHVQDDTLLSVSLFGTA 335


>gi|46203851|ref|ZP_00050893.2| COG0253: Diaminopimelate epimerase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 98

 Score = 54.8 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 50  MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR------FLTSRMKRKSFTFETIR 103
           M++HD      DAF+RI N DGSE  +CGNG RCV         +    +  + T ET  
Sbjct: 1   MVVHDPVSPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPSENGTLTLETKA 60

Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSF 136
           G++  K   D S +VDMG+P L W  IPLA   
Sbjct: 61  GLVAVKRITDRSFTVDMGQPRLRWDEIPLAEPL 93


>gi|57865749|ref|YP_189923.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis RP62A]
 gi|251811536|ref|ZP_04826009.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876692|ref|ZP_06285548.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis SK135]
 gi|57636407|gb|AAW53195.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis RP62A]
 gi|251804914|gb|EES57571.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281294343|gb|EFA86881.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis SK135]
 gi|329735791|gb|EGG72071.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU045]
          Length = 279

 Score = 54.4 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 93/291 (31%), Gaps = 28/291 (9%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           MQ  +V+F+K    GN  +++  +       + A   ++T  +   +Q+  I      + 
Sbjct: 1   MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119
           D +  +++ +      CGN     + +L  R+  +   F+    G     E +  S   +
Sbjct: 60  DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +  P +        +  ++  +           ++     V +     +           
Sbjct: 116 VTMPKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQCVE------DFVS 169

Query: 180 LASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGC 238
             ++        +     +         + ++D   WE       +CGS A +  V    
Sbjct: 170 AQTWHRQFKTIGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY 223

Query: 239 LHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282
              T+  +    V   GG +++    +        + G+      G+  I+
Sbjct: 224 --LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272


>gi|270646071|ref|ZP_06222183.1| diaminopimelate epimerase [Haemophilus influenzae HK1212]
 gi|270317241|gb|EFA28820.1| diaminopimelate epimerase [Haemophilus influenzae HK1212]
          Length = 45

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281
               N  V V +LGG L+IEW+   H ++MTGEA   ++G + +
Sbjct: 2   QGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 45


>gi|314934890|ref|ZP_07842249.1| diaminopimelate epimerase family protein [Staphylococcus caprae
           C87]
 gi|313652820|gb|EFS16583.1| diaminopimelate epimerase family protein [Staphylococcus caprae
           C87]
          Length = 280

 Score = 54.0 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 35/290 (12%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M   +V+F+K    GN  +++  +   +   S A   ++T  +   +Q+  I      + 
Sbjct: 1   MHRQIVEFSKYNPSGNMTILVHSKHHPEEYASIANQLMAT-THVCCEQVGFIESSDYTNG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE------TIRGILVAKENRDG 114
           D F  +++ +      CGN     + +L      +S  F+      +          +  
Sbjct: 60  DQFHLVMSGNE----FCGNATMSYIHYLQEHQLLESEQFQLKISGCSQTVSCTVHNQQYY 115

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            + +   + I+  +LI   + +D ++                           +   +  
Sbjct: 116 EVGMPQVQSIVPRQLIIAGQPYDALELIYETYIHYVIQTQETTMNFKYQVEQFVREQQWH 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +        +H +        +  +          WE       +CGS A +  V
Sbjct: 176 TTFKTIGIMLFDSRQHFLMPLIYIPEVQSLI---------WE------KSCGSGAASIGV 220

Query: 235 ASGCLHKTNRAV---SVKMLGGGLLIE---WHDNNHVF-MTGEAKKEWEG 277
                ++TN+      VK  GG +++     +   ++  + G+      G
Sbjct: 221 --LQQYQTNQPCKDFKVKQPGGSIVVSSTYSNKKGYITSIKGQVSTVATG 268


>gi|282917824|ref|ZP_06325574.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283767554|ref|ZP_06340469.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19]
 gi|282318109|gb|EFB48469.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283461433|gb|EFC08517.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19]
          Length = 273

 Score = 54.0 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 23/289 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  + +     S  + CGN     +  L      K   F+               +   
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCA 108

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +       +P A        +  +        +   +V  +   + +      L    
Sbjct: 109 IHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHL---- 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASG 237
           + ++      +  +     +            +   E + +    +CGS  A   V  + 
Sbjct: 165 VETYVREQQWNHKYKTVGMMLFNEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNY 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 225 QRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|229589602|ref|YP_002871721.1| putative epimerase [Pseudomonas fluorescens SBW25]
 gi|229361468|emb|CAY48344.1| putative epimerase [Pseudomonas fluorescens SBW25]
          Length = 346

 Score = 54.0 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 75/254 (29%), Gaps = 33/254 (12%)

Query: 46  FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR-----------FLTSRMKR 94
            D +++      A     + I+N DGS  +  GNG+    +                   
Sbjct: 84  CDGLLV--GPFQAEPPFDLLIVNTDGSLAERSGNGLTIFAQALTEQALMTDACELRVHHD 141

Query: 95  KSFTFETIRGILVAKE-NRDGSISVDMGEPILDWKLIPLAR----SFDKMDRDRFHIGPV 149
           K+     +   +            +++G P      +          +  +         
Sbjct: 142 KTDAVSPVATRVEPSVREDVAGFWLELGLPTFGPSAVGAQGVDQAFLEGAELSHISELTA 201

Query: 150 NHLFLRNPFVVSMGNPHAI--------------FFVEDDLYHYDLASFGNLLAKHPMFSE 195
            +        V +GNPH +                           +F          + 
Sbjct: 202 INPQWATSQFVRVGNPHCVTLVERVSALPDNAQMQQPALFEALKAIAFAPPAGGGQPCAA 261

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGG 254
           GVNL  A   S   L  R +ERG G TA+ G++A A   A+          ++V M GG 
Sbjct: 262 GVNLQWAARESRNRLIARVFERGEGPTASSGTSASAVACAAWRAGWVESGDIAVVMPGGI 321

Query: 255 LLIEWHDNNHVFMT 268
             +  H  +   ++
Sbjct: 322 APVRLHTQDKTLLS 335


>gi|261406672|ref|YP_003242913.1| hypothetical protein GYMC10_2835 [Paenibacillus sp. Y412MC10]
 gi|261283135|gb|ACX65106.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 293

 Score = 54.0 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 81/279 (29%), Gaps = 19/279 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K     N  ++I       +        + + DN + +Q+  I        DAF+R
Sbjct: 5   IDFVKCNPTQNMTILI-NTKLPPDEHKRVAAKIMSYDNVYAEQVGFIEQSMKDDADAFLR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +   +      CGN    +  +L      K       R  +   E           E   
Sbjct: 64  MAGGE-----FCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKEDYR 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               +PL    D+             +     FV  +          +          G 
Sbjct: 119 CRVNMPLPVRIDQTILQDGCSLVDAVVVRYKDFVHFVIEVERFDAQMNSSMLAMAKHIGP 178

Query: 186 LLAKHPMFSEGVNLSIARV---TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            L    +     N  I  +     +  L+   WERG      CGS   +        HK 
Sbjct: 179 FLDARMVGILLYNSRIRELTPLIYVPELNSAVWERG------CGSGTASVGAYLAWKHKR 232

Query: 243 NRAVSVKMLGGGLLIE--WHDN--NHVFMTGEAKKEWEG 277
               S+K  GG + ++  +  N   H+ + G      +G
Sbjct: 233 GVEASIKQPGGTIHVKALFDQNRLTHLEIEGSVGIAAQG 271


>gi|302061755|ref|ZP_07253296.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40]
          Length = 40

 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 5  MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD 42
          ++ F KM G+GN  +V+D+   H +I            
Sbjct: 2  LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRH 39


>gi|49484684|ref|YP_041908.1| hypothetical protein SAR2557 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423952|ref|ZP_05600381.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426635|ref|ZP_05603037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429270|ref|ZP_05605657.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257431916|ref|ZP_05608279.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434877|ref|ZP_05610928.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902383|ref|ZP_06310276.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906811|ref|ZP_06314659.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909787|ref|ZP_06317596.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912035|ref|ZP_06319831.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282915330|ref|ZP_06323107.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282921053|ref|ZP_06328771.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925959|ref|ZP_06333607.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283959250|ref|ZP_06376691.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497725|ref|ZP_06665579.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293511305|ref|ZP_06670001.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293549913|ref|ZP_06672585.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295429057|ref|ZP_06821679.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589451|ref|ZP_06948092.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242813|emb|CAG41538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272970|gb|EEV05072.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276266|gb|EEV07717.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279751|gb|EEV10338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282795|gb|EEV12927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285473|gb|EEV15589.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312788|gb|EFB43192.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315468|gb|EFB45852.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321051|gb|EFB51385.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M899]
 gi|282323731|gb|EFB54047.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326361|gb|EFB56665.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329710|gb|EFB59231.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596842|gb|EFC01801.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|283788842|gb|EFC27669.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918960|gb|EFD96036.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096656|gb|EFE26914.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291465931|gb|EFF08461.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           M809]
 gi|295126816|gb|EFG56460.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297577962|gb|EFH96675.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437110|gb|ADQ76181.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315194971|gb|EFU25359.1| hypothetical protein CGSSa00_02877 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 273

 Score = 53.6 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 81/290 (27%), Gaps = 25/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118
            D  + +     S  + CGN     +  L      K   F+    G     +        
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              +     +++P   +          I    ++    P                     
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVSQVTTEIQH----------- 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236
            + ++      +  +     +            +   E + +    +CGS  A   V  +
Sbjct: 164 LVETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
              +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|258424990|ref|ZP_05687861.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257844824|gb|EEV68867.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 273

 Score = 53.2 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 23/289 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  + +     S  + CGN     +  L      K   F+               +   
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCA 108

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +       +P A        +  +        +   +V  +   + +      L    
Sbjct: 109 IHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHL---- 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASG 237
           + ++      +  +     +            +   E + +    +CGS  A   V  + 
Sbjct: 165 VETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNY 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 225 QRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|283471689|emb|CAQ50900.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 273

 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 81/290 (27%), Gaps = 25/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118
            D  + +     S  + CGN     +  L      K   F+    G     +        
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              +     +++P   +          I    ++    P                     
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236
            + ++      +  +     +            +   E + +    +CGS  A   V  +
Sbjct: 164 LVETYVRKQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
              +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|298695738|gb|ADI98960.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 273

 Score = 53.2 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 23/289 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            D  + +     S  + CGN     +  L      K   F+               +   
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCA 108

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           + +       +P A        +  +        +   +V  +   + +      L    
Sbjct: 109 IHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTIEIQHL---- 164

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASG 237
           + ++      +  +     +            +   E + +    +CGS  A   V  + 
Sbjct: 165 VETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNY 224

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
             +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 225 QRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|28211908|ref|NP_782852.1| hypothetical protein CTC02312 [Clostridium tetani E88]
 gi|28204351|gb|AAO36789.1| conserved protein [Clostridium tetani E88]
          Length = 266

 Score = 52.9 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 70/263 (26%), Gaps = 19/263 (7%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86
              +  D    L    N H +Q+  +    +      + ++  +      CGN  R +  
Sbjct: 13  PKELYKDISKKLMQYTNIHGEQVGFLTSSNEEEKIIKLNMMGGE-----FCGNASRSLGA 67

Query: 87  FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146
            L           +    +   K    G   V   E              D     +  +
Sbjct: 68  LLLYN---NYPYIKNKEELYEVKLQCSGYEDVLNCEVTPTEVSNLFYSKIDMPIPSKIKL 124

Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206
             +    +        G  H +  +     +    +      +           +    +
Sbjct: 125 EKLEDYEIYKVDF--SGIFHFVVDINKVENNEKFFNLVKNTMEERYPEYDAFGIMFYNFN 182

Query: 207 LESLDLRTWERGVG---LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL-----IE 258
              L    + +         +C S   A V A    +K N  + ++  GG L      +E
Sbjct: 183 KNYLKPLVYVKATDSLFWEESCASGTSAVVSALAYENKENICIGIRQPGGELEATANYVE 242

Query: 259 WHDNNHVFMTGEAKKEWEGKLDI 281
              +  + + G  +   EG +++
Sbjct: 243 SKID-KITIKGTVEIVAEGIVNV 264


>gi|329928299|ref|ZP_08282187.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5]
 gi|328937933|gb|EGG34336.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5]
          Length = 293

 Score = 52.5 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 73/256 (28%), Gaps = 15/256 (5%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K     N  ++I       +        + + DN + +Q+  I        DAF+R
Sbjct: 5   IDFVKCNPTQNMTILI-NTKLPPDEHKRVAAKIMSYDNVYAEQVGFIEQSMKDDADAFLR 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +   +      CGN    +  +L      K       R  +   E           E   
Sbjct: 64  MAGGE-----FCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKEDYR 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
               +PL    D+             +     FV  +          +          G 
Sbjct: 119 CRVNMPLPVRIDQTVLQDGCSLVDAVVVRYKDFVHFVIEVERFDAQMNSSMLAMAKHIGP 178

Query: 186 LLAKHPMFSEGVNLSIARV---TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            L    +     N  I  +     +  L+   WERG      CGS   +        HK 
Sbjct: 179 FLDARMVGILLYNSRIRELTPLIYVPELNSAVWERG------CGSGTASVGAYLAWKHKR 232

Query: 243 NRAVSVKMLGGGLLIE 258
               S+K  GG + ++
Sbjct: 233 GVEASIKQPGGTIHVK 248


>gi|261886398|ref|ZP_06010437.1| diaminopimelate epimerase [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 179

 Score = 52.5 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLASFGN 185
           +I  +   D ++        ++  F+   F       G PH + FV++      L+ F  
Sbjct: 30  IIKASIDNDFVEVALXAPKXLSEPFIEYGFEWSFYDTGVPHLVTFVDN------LSKFDL 83

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244
            +          N++ A +     L++RT+ERGV   T ACG+   AS        K N 
Sbjct: 84  SVCSELRKKYNANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFNP 143

Query: 245 AVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + V       L +++ D   ++  G+ K  ++  +
Sbjct: 144 CLKVNPKSKEDLWLKF-DGETIYFKGKVKHCFDTSI 178


>gi|15925460|ref|NP_372994.1| hypothetical protein SAV2470 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15928049|ref|NP_375582.1| hypothetical protein SA2258 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268907|ref|YP_001247850.1| hypothetical protein SaurJH9_2497 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394982|ref|YP_001317657.1| hypothetical protein SaurJH1_2546 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980785|ref|YP_001443044.1| hypothetical protein SAHV_2454 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315492|ref|ZP_04838705.1| hypothetical protein SauraC_04967 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255007244|ref|ZP_05145845.2| hypothetical protein SauraM_12265 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794809|ref|ZP_05643788.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258407489|ref|ZP_05680632.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258422182|ref|ZP_05685094.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258439575|ref|ZP_05690321.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258442868|ref|ZP_05691428.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446431|ref|ZP_05694586.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258450452|ref|ZP_05698544.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258455171|ref|ZP_05703131.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|269204103|ref|YP_003283372.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893922|ref|ZP_06302154.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117]
 gi|282926961|ref|ZP_06334586.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|295405165|ref|ZP_06814978.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819]
 gi|296276871|ref|ZP_06859378.1| hypothetical protein SauraMR_11009 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244220|ref|ZP_06928110.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|13702420|dbj|BAB43561.1| SA2258 [Staphylococcus aureus subsp. aureus N315]
 gi|14248244|dbj|BAB58632.1| similar to diaminopimelate epimerase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147741976|gb|ABQ50274.1| Diaminopimelate epimerase-like protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149947434|gb|ABR53370.1| diaminopimelate epimerase-like protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156722920|dbj|BAF79337.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788781|gb|EEV27121.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257841001|gb|EEV65452.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257841613|gb|EEV66050.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257847351|gb|EEV71353.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851989|gb|EEV75923.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854499|gb|EEV77447.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257856544|gb|EEV79453.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257862382|gb|EEV85150.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262076393|gb|ACY12366.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282591008|gb|EFB96082.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282763980|gb|EFC04108.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117]
 gi|285818131|gb|ADC38618.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981]
 gi|294970110|gb|EFG46128.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819]
 gi|297178998|gb|EFH38243.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|312830814|emb|CBX35656.1| diaminopimelate epimerase-like protein [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315130888|gb|EFT86873.1| hypothetical protein CGSSa03_12295 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329723367|gb|EGG59896.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 273

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 25/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118
            D  + +     S  + CGN     +  L      K   F+    G     +        
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              +     +++P   +          I    ++    P                     
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKALEIIYETYVHYVIPVKQVTTEIQH----------- 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236
            + +F         +     +            +   E + +    +CGS  A   V  +
Sbjct: 164 LVEAFVREQQWSHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
              +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|253730147|ref|ZP_04864312.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726124|gb|EES94853.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 273

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 81/290 (27%), Gaps = 25/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNGQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118
            D  + +     S  + CGN     +  L      K   F+    G     +        
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              +     +++P   +          I    ++    P                     
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236
            + +F      +  +     +            +   E + +    +CGS  A   V  +
Sbjct: 164 LVEAFVRKQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
              +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|21284123|ref|NP_647211.1| hypothetical protein MW2394 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487253|ref|YP_044474.1| hypothetical protein SAS2361 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650980|ref|YP_187276.1| hypothetical protein SACOL2479 [Staphylococcus aureus subsp. aureus
           COL]
 gi|82752066|ref|YP_417807.1| hypothetical protein SAB2353c [Staphylococcus aureus RF122]
 gi|87160489|ref|YP_495049.1| hypothetical protein SAUSA300_2414 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88196406|ref|YP_501229.1| hypothetical protein SAOUHSC_02770 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222579|ref|YP_001333401.1| hypothetical protein NWMN_2367 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510671|ref|YP_001576330.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140401|ref|ZP_03564894.1| hypothetical protein SauraJ_02051 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253734105|ref|ZP_04868270.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451224|ref|ZP_05699257.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262049914|ref|ZP_06022775.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30]
 gi|262052652|ref|ZP_06024845.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3]
 gi|282920460|ref|ZP_06328183.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|284025490|ref|ZP_06379888.1| hypothetical protein Saura13_12922 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294849020|ref|ZP_06789765.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754]
 gi|297209707|ref|ZP_06926103.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300910720|ref|ZP_07128170.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379670|ref|ZP_07362403.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|21205566|dbj|BAB96259.1| MW2394 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245696|emb|CAG44175.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285166|gb|AAW37260.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|82657597|emb|CAI82042.1| conserved hypothetical protein [Staphylococcus aureus RF122]
 gi|87126463|gb|ABD20977.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203964|gb|ABD31774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150375379|dbj|BAF68639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369480|gb|ABX30451.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253727800|gb|EES96529.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257861016|gb|EEV83831.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259159460|gb|EEW44511.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3]
 gi|259161990|gb|EEW46571.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30]
 gi|269942051|emb|CBI50463.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282594406|gb|EFB99392.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294824399|gb|EFG40823.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754]
 gi|296885380|gb|EFH24317.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300887700|gb|EFK82895.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304341846|gb|EFM07752.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196317|gb|EFU26670.1| hypothetical protein CGSSa01_01196 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139179|gb|EFW31061.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142566|gb|EFW34374.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329726727|gb|EGG63188.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329730442|gb|EGG66832.1| diaminopimelate epimerase family protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 273

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 25/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118
            D  + +     S  + CGN     +  L      K   F+    G     +        
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              +     +++P   +          I    ++    P                     
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236
            + +F         +     +            +   E + +    +CGS  A   V  +
Sbjct: 164 LVEAFVREQQWSHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
              +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|329315155|gb|AEB89568.1| hypothetical protein SAT0131_02669 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 273

 Score = 52.1 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 25/290 (8%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q D  
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118
            D  + +     S  + CGN     +  L      K   F+    G     +        
Sbjct: 60  NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              +     +++P   +          I    ++    P                     
Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236
            + +F         +     +            +   E + +    +CGS  A   V  +
Sbjct: 164 LVEAFVREQQWSHKYKTVGMMLFDEQHQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223

Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
              +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|34763520|ref|ZP_00144460.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27886803|gb|EAA23936.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 265

 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 76/275 (27%), Gaps = 22/275 (8%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K+   GN  ++ID    ++         +  + N + +Q+  I        D  ++
Sbjct: 8   LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           ++  +      CGN  R     L  R K                    G   V   +   
Sbjct: 61  MMGGE-----FCGNASRSFASLLAFRDK-------DFSEQKNYSITCSGENEVLDVDVRE 108

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
           D                      ++   L       + +         ++   ++     
Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRFSGINHFIFNIKENKEVSFENIIDLVK 168

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244
               +  +S    +   R        +   E G G    +C S   A           +R
Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228

Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
              +    G L     +N+ + + G  +   EGK+
Sbjct: 229 -AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261


>gi|302334095|gb|ADL24288.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 273

 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 85/288 (29%), Gaps = 21/288 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M   +++F+K    GN  +++  +       +   N L    +   +Q+  I   Q+   
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           + F  +++ +      CGN     +  L      K   F+               +   +
Sbjct: 60  NNFHLVMSGNE----FCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCAI 109

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +       +P A        +  +        +   +V  +   + +      L    +
Sbjct: 110 HDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHL----V 165

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASGC 238
            +F      +  +     +            +   E + +    +CGS  A   V  +  
Sbjct: 166 ETFVREQQWNDKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNYQ 225

Query: 239 LHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282
            +   +  +V   GG +L+             + G+      GK  I+
Sbjct: 226 RNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273


>gi|226312407|ref|YP_002772301.1| hypothetical protein BBR47_28200 [Brevibacillus brevis NBRC 100599]
 gi|226095355|dbj|BAH43797.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 285

 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 31/291 (10%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           +DF K     N  +++      +  T  A   +S     H +Q+  I    +    A ++
Sbjct: 5   IDFIKFNPTQNMTILVKNNHPAEEYTHIASKMMSYAS-VHAEQVGFIEKPNNYGAAAHLQ 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +   +      CGN    +   +      +   F  I       ++        + +   
Sbjct: 64  MAGGE-----FCGNACMALALLIAHENGLQHNDFTEIVLEASGTDHFVVCQVKRIKDEYY 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN----PHAIFFVEDDLYH---- 177
               +PL +  ++   +         +     F   +        A+      L      
Sbjct: 119 CQVSMPLPKKIEQQSINYDGDEINLVIVRYQDFFHIVIEVEQFSEAVRKRAQSLAKLLGV 178

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237
               S   +L   P  +E   L               WE G      CGS   +      
Sbjct: 179 TVGVSLIGVLLYQPASNELAPLIFVPSLDS-----MIWESG------CGSGTASLGAYLA 227

Query: 238 CLHKTNRAVSVKMLGGGLLI--EWHDNN--HVFMTGEAKKEWEGK--LDIK 282
              +++ +  ++  GG + +  +W       + + G      +GK  ++I+
Sbjct: 228 WKKQSDISAHIRQPGGTIHVTADWQKEEVTSLKIEGAVGIVAQGKAFIEIQ 278


>gi|15614634|ref|NP_242937.1| hypothetical protein BH2071 [Bacillus halodurans C-125]
 gi|10174690|dbj|BAB05790.1| BH2071 [Bacillus halodurans C-125]
          Length = 277

 Score = 51.7 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 81/280 (28%), Gaps = 19/280 (6%)

Query: 6   VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65
           ++F K     N  ++++               + + D+ + +Q+  I    +    A + 
Sbjct: 5   IEFIKFNPTQNMTILVE-TNDPIGEYKHIAEKIMSYDSVYAEQVGFIEKPLNRQAAAHLE 63

Query: 66  IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
           +   +      CGN    +   + S    +      I   +   +N          +   
Sbjct: 64  MAGGE-----FCGNACMALAALIASEKGLRPTELMEIVLEVSGTDNLVMCQVERTLDEFH 118

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLAS 182
               +PL +  ++             +     F   V+ + + + I   +       L  
Sbjct: 119 CQVTMPLPKQIEQKIVKYDGSEMNLIIVRYQEFIHIVIEVDDFNKIVREKAQSLAKLLGV 178

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
                    +  +     +A +  +  LD   WERG      CGS   +        +K 
Sbjct: 179 TLGTNLIGILLYKSNTSELAPLIFVPDLDSMIWERG------CGSGTASLGAYLAWKNKK 232

Query: 243 NRAVSVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGK 278
                +K  GG + +    E      + + G       GK
Sbjct: 233 EIVAKIKQPGGTIQVIATCEEEKLTSLKIEGSVSIVARGK 272


>gi|255524201|ref|ZP_05391161.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|255512186|gb|EET88466.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
          Length = 31

 Score = 51.3 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 6  VDFAKMEGIGNKILVIDMRGCHD 28
          + F KM+G GN  +VID R    
Sbjct: 1  MKFTKMQGTGNDFIVIDDRKNSF 23


>gi|50290607|ref|XP_447736.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527047|emb|CAG60683.1| unnamed protein product [Candida glabrata]
          Length = 293

 Score = 50.9 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 30/250 (12%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I+  Q+   D  +RI     SE+   G+      +     + +       I G  +  +
Sbjct: 55  FIYKSQNPQADYKVRIFTP-VSELPFAGHPTVGTCKAYLDIVGK------PISGNYIVHQ 107

Query: 111 NR-DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
               G + +++ + I+ +    +A +    +    +   V H +   P ++  G    ++
Sbjct: 108 ECAAGLVPIEIKDGIVSFSAPRVAPTELSDEVIAEYTKIVGHPYTHRPQMIDSGPQWVVY 167

Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA----- 224
            VED    Y++      L    + ++   + IA   S    ++    R      +     
Sbjct: 168 LVEDADTCYNINPNFQNLKLLNLDNDHSGVIIAGPRSDNEWEM----RAFVPVLSVPEDP 223

Query: 225 -CGSAACASVVASGCLHKTNRAVSVK-MLGGGL--------LIEWHDNNHVFMTG--EAK 272
            CGS A A +       +     +VK   GG L         I   +   V+  G     
Sbjct: 224 VCGSGAAAFIGHLQQRFQYKETTNVKITQGGRLNRNGLIVGQINLDNEKPVYKIGGVPVT 283

Query: 273 KEWEGKLDIK 282
              +G + ++
Sbjct: 284 VV-DGTITVR 292


>gi|306821068|ref|ZP_07454686.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550904|gb|EFM38877.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 275

 Score = 50.5 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 75/278 (26%), Gaps = 36/278 (12%)

Query: 20  VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79
           ++D      +I  +    L    N + +Q+  +   +    +  +R+    G   + CGN
Sbjct: 18  ILDEVEKAKHI--EIAKKLMDYSNLYAEQVGFVEKMKTDDDNIAVRLQMMGG---EFCGN 72

Query: 80  GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-----SISVDMGEPILDWKLIPLAR 134
             R +       +     +   I           G       +V   +       I +  
Sbjct: 73  ATRSLAAL---LVHYDHKSIRNIGDNYYVDVETSGLEKVLRCTVQKLDDFTYMSKIAMPL 129

Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194
             +                 +   V   G  H I  V+       + +          + 
Sbjct: 130 PSEMPTELLL------DDKYKLYRVDFDGISHFIIDVKTVEDKNQIFNLIKNYIDSENYD 183

Query: 195 EGVNLSIARVTSL-------ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247
               +               ++ D   WER      +C S   A   A   ++     + 
Sbjct: 184 AFGIMFYDFDIDYLTPLVYVKATDSLFWER------SCASGTSAVGAALSYIYSKELNLD 237

Query: 248 VKMLGGGLLIEWHDNNHVF----MTGEAKKEWEGKLDI 281
           +   GG L I+      V     + G+ +    G +++
Sbjct: 238 ISQPGGVLSIQTRLKYGVISDINLNGKVEIVARGTVNV 275


>gi|332798764|ref|YP_004460263.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1]
 gi|332696499|gb|AEE90956.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1]
          Length = 264

 Score = 50.2 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 25/241 (10%)

Query: 45  HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG 104
           H +Q+  I           + +   +      CGN       ++  +       F     
Sbjct: 41  HAEQVGFIVPPSKKDSVIRLEMAGGE-----FCGNATLSAAAYVRYKGLSDKENFSIDAS 95

Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--FVVSM 162
              A E     +            ++P A+  DKM+ +        ++         V  
Sbjct: 96  G--AAEPIRCRVEKVNTYCYNTSCIMPPAKRIDKMELELQGKIIKGYIVEFEGISHFVLE 153

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
                + + E             +              I     ++ ++   +ERG    
Sbjct: 154 TKEEFVEYSEVTQALKKAIDTNAIGVIPYETIRDDTYKIKPFVYVKEINSNVFERG---- 209

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGK 278
             CGS + A       +   +R + V   GG + +   D       V +T       EG+
Sbjct: 210 --CGSGSLALGTYLKRVRGISREIRVVQPGGVIRVGIADEFFISTDVILT------CEGR 261

Query: 279 L 279
           +
Sbjct: 262 I 262


>gi|255644698|gb|ACU22851.1| unknown [Glycine max]
          Length = 301

 Score = 48.2 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 70/229 (30%), Gaps = 14/229 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET--IRGILVAKENRDGSISVD 119
             +R      SE+  CG+        + S     +   E   I GIL AK+    +I+  
Sbjct: 70  FDLRWFTP-VSEINLCGHATLAAAHTIFSSGLVDTDVVEFVAISGILTAKKIPAINITSA 128

Query: 120 MGEPILDWKL---IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
                 + +    + L    D +    F         L    ++ +        +   + 
Sbjct: 129 SDLQKGEAQDGFYVELNFPADPVVEFNFDETSQISGALNGASIIDIKRTQDGGDLVVVVT 188

Query: 177 HYDLASFGNLLAKHPMFSEG---VNLSIARVTSLESLDLRTW--ERGVGLTAACGSAACA 231
              +           +   G   +   IA   S      R +  + GV     CG A CA
Sbjct: 189 SGRVVEELQPQLDAIVKCPGRGLIVTGIAPPGSEFDFCSRFFCPKLGVNEDPVCGGAHCA 248

Query: 232 SV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277
                S  L K +         GG L +   + N  V + G+A K  EG
Sbjct: 249 LAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKVMEG 297


>gi|255523493|ref|ZP_05390461.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296186548|ref|ZP_06854951.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7]
 gi|255512750|gb|EET89022.1| diaminopimelate epimerase [Clostridium carboxidivorans P7]
 gi|296048995|gb|EFG88426.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7]
          Length = 51

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           ++  +  V +KMLGG LLI      ++ MTGE ++  EG L
Sbjct: 1   MNLVDEKVKIKMLGGELLIRIDAAWNIEMTGEVRQIAEGTL 41


>gi|239995939|ref|ZP_04716463.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
          Length = 38

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF-MTGE 270
                  K  + V V + GG L I W   ++V  MTG 
Sbjct: 1   AIGQIQGKLGKDVRVDLPGGSLRIRWPGPDNVLKMTGP 38


>gi|330684131|gb|EGG95880.1| diaminopimelate epimerase family protein [Staphylococcus
           epidermidis VCU121]
          Length = 279

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 81/289 (28%), Gaps = 21/289 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M   +++F+K    GN  +++  +    +    A   +++  +   +Q+  I        
Sbjct: 1   MNRQVIEFSKYNPSGNMTILVHSQHHPSDYAKIANRLMAS-THVCCEQVGFIESNNLNHG 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D    +++ +      CGN     + +L     ++    +    +    +    +I    
Sbjct: 60  DDCRLVMSGNE----FCGNATMSYMHYLQEH--QRLTAQQCHLNVSGCDDLVPCTIHGHQ 113

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
              +   +   +   +                     +V  +     I       +   +
Sbjct: 114 QYEVGMPQAQHVTTEY----LHIAQHMWQAIKITYESYVHYVIPIEEITAT----FKQQV 165

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSAACASVVASGCL 239
           A F         +     +            +   E + +    +CGS A +  V     
Sbjct: 166 AQFVREQQWDEQYKTIGIMLFNVQEQYLHPLIYIPEVKSLIWENSCGSGAASIGVFHNYQ 225

Query: 240 HKTN-RAVSVKMLGGGLLIE---WHDNN-HVFMTGEAKKEWEGKLDIKT 283
            + +     V   GG + +      +N     + G       G+  I+ 
Sbjct: 226 SQQSCEDYIVYQPGGSISVTSAYCSENGYRTSIKGRVSTVARGQAYIEE 274


>gi|255521954|ref|ZP_05389191.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175]
          Length = 66

 Score = 47.5 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 1  MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53
          M++  + F K+ G  N   ++D    H         ++    L    +     D I  + 
Sbjct: 1  MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGIXYVT 58

Query: 54 DFQD 57
             +
Sbjct: 59 KSSE 62


>gi|217072906|gb|ACJ84813.1| unknown [Medicago truncatula]
          Length = 292

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 13/229 (5%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET--IRGILVAKENRDGSISVD 119
             +R       EV  CG+        L S         E     GIL AK     S    
Sbjct: 64  FGLRWFTPVA-EVNLCGHATLAAAHTLLSSGLVDKNAIEFVTRSGILTAKRTDVTSALNL 122

Query: 120 MGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
                     I L    D +     +      G +N   + +    + G+   +     +
Sbjct: 123 QNGEAPVGFYIELDFPADPIAEFNSNDTSLISGALNGASIIDIKRTTNGDNLLVLVTSGE 182

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW-ERGVGLTAACGSAACASV 233
               ++    + + K P     V       +  +        + G+     CGSA C   
Sbjct: 183 -NVTEVQPQFDAIVKCPGMGIIVTGIAPPESGFDFYSRYFCPKHGINEDPVCGSAHCGLA 241

Query: 234 -VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
              S  L K +         GG L I   +    VF+ G+A    EG +
Sbjct: 242 PYWSKKLGKCDLKAYQASARGGILNIHIDEQKQRVFLRGKAVTVMEGSV 290


>gi|331083333|ref|ZP_08332446.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404414|gb|EGG83959.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 259

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 68/256 (26%), Gaps = 29/256 (11%)

Query: 32  SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
                 L   +  H +Q+  +   QD S    ++++  +      CGN  R     L+  
Sbjct: 28  PAISRELLCMEELHGEQVGFVEKMQDGS--FHMQMMGGE-----FCGNATRSFGYLLSML 80

Query: 92  MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151
            + K+            K            E       +PL     ++            
Sbjct: 81  SEEKAEDVWVDVSGSQKKLKV-----AVDMEKGTARTEMPLPMEIKEISVKE-------- 127

Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
                  +V       I           +        +     +   +     + +  + 
Sbjct: 128 ---EKYSMVVFEGICHIIVNSAPKAQEFVDELIEKAKRV-CPCDAYGVMFLEESKMTPVV 183

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNNHVF--- 266
                  +   ++CGS +  + V       T   V  +   GG +      +N  VF   
Sbjct: 184 YVESTTSMVWESSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENGKVFSCK 243

Query: 267 MTGEAKKEWEGKLDIK 282
           M G      E K+DIK
Sbjct: 244 MGGPVTISEEMKVDIK 259


>gi|172061314|ref|YP_001808966.1| PhzF family phenazine biosynthesis protein [Burkholderia ambifaria
           MC40-6]
 gi|171993831|gb|ACB64750.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria
           MC40-6]
          Length = 293

 Score = 47.1 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 58/241 (24%), Gaps = 15/241 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
            +    D   D  +RI    G E+   G+                R         G+   
Sbjct: 52  FVCTPTDPEADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110

Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +             P      D    P+  +  + +       P          VV + +
Sbjct: 111 ELREQADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGAPWLVVRLTS 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             A   +  D                  ++   +   A         +     G G   A
Sbjct: 171 ADACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228

Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            GSA  A         +      T R  +     G + + + D+  +++ G      +G 
Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRDGRIAVRYDDDGTIWIGGNVVTVVDGT 288

Query: 279 L 279
            
Sbjct: 289 F 289


>gi|260905985|ref|ZP_05914307.1| phenazine biosynthesis protein [Brevibacterium linens BL2]
          Length = 278

 Score = 46.3 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 23/242 (9%)

Query: 49  IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA 108
           ++ +   +        RI     +E+   G+ +    R    R +  + TF T  G +  
Sbjct: 47  VVFVDRPRSDPTRVQCRIFTP-VNELPFAGHPLIGAARVHLDRHQLSNATFTTPSGAVRI 105

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
            ++   + SV + +         +                    F   P +   G  H +
Sbjct: 106 SKDPADTSSVQITQA--------MPTEVATEHAAELKPALGTSSFAGAPALYDAGARHLV 157

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             +       +L +      +   F +      A    +    + +   GV   AA GSA
Sbjct: 158 VPIR---TVNELMAIRPDHRRLSTFEDMAINCYAAENGVLFNRMFSPAYGVQEDAATGSA 214

Query: 229 ACASVVASGCLHKTNRAVSVKMLGG-------GLLIEWHDNNH----VFMTGEAKKEWEG 277
                + +  +   +  + V++  G        + +    +      V ++G       G
Sbjct: 215 CAPIALHAVSIGLHDSLLRVEVRQGHKLGKDCRMTVSIRQDQEPQCAVSLSGATALVAHG 274

Query: 278 KL 279
            L
Sbjct: 275 TL 276


>gi|260588942|ref|ZP_05854855.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260540721|gb|EEX21290.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 259

 Score = 46.3 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 70/256 (27%), Gaps = 29/256 (11%)

Query: 32  SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91
                 L   +  H +Q+  +   QD S    ++++  +      CGN  R     L+  
Sbjct: 28  PAISRELLCMEELHGEQVGFVEKMQDGS--FHMQMMGGE-----FCGNATRSFGYLLSML 80

Query: 92  MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151
            + K+            K      +                  +          +  V+ 
Sbjct: 81  SEEKAEDVWVDVSGSKKKLKVTVDME---------------KGTARTEMSLPMEMTEVSV 125

Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211
              +   VV  G  H I         +            P   +   +     + +  + 
Sbjct: 126 KEEKYSMVVFEGICHIIVNSAPKAQEFVDELIEEAKRVCPC--DAYGVMFLEESKMTPVV 183

Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNNHVF--- 266
                  +   ++CGS +  + V       T   V  +   GG +      +N  VF   
Sbjct: 184 YVESTTSMVWESSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENGKVFSCK 243

Query: 267 MTGEAKKEWEGKLDIK 282
           M G      E K+DIK
Sbjct: 244 MGGPVTISEEMKVDIK 259


>gi|302338226|ref|YP_003803432.1| hypothetical protein Spirs_1711 [Spirochaeta smaragdinae DSM 11293]
 gi|301635411|gb|ADK80838.1| hypothetical protein Spirs_1711 [Spirochaeta smaragdinae DSM 11293]
          Length = 290

 Score = 45.9 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 64/281 (22%), Gaps = 34/281 (12%)

Query: 17  KILVIDMRGCHDN------ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70
             L+I+      +       + D I           D I+L++  ++ +V          
Sbjct: 14  DFLLINALTNDISEHLFDRKSVDLI--CDRRRGVGGDGIILLYPSREQNVGLHFLSPLSG 71

Query: 71  GSE-----VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
             E     + +          F      R     E     +           +++G PI 
Sbjct: 72  TQEKKREDLNASALLCASRFAFDFGLFNRDRLVIEGPTKDIEITCIDSTLFQIELGIPIS 131

Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
                       + DR   H+              S     A              +   
Sbjct: 132 LS-----GEEIKEDDRQEVHLWKPLQDQSIAYTCCSFSEFPARATAMVPGIPETERAEAF 186

Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-------LTAACGS-AACASVVASG 237
                         ++A   SL +      +            T  C S  +    V + 
Sbjct: 187 CRHVRKQDIGSAVFAVAEQQSLVAYSPFPAQGPGDAVIEAAAATLLCASGGSSGREVTAR 246

Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            +++             L + W  +  + + G     + G 
Sbjct: 247 KVNRNQSE--------ELYVTWTGSGSLVVGGVPHYVFTGN 279


>gi|256377977|ref|YP_003101637.1| hypothetical protein Amir_3920 [Actinosynnema mirum DSM 43827]
 gi|255922280|gb|ACU37791.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827]
          Length = 270

 Score = 45.5 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 82/282 (29%), Gaps = 21/282 (7%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
           M S  +DF K++   N  L++      +    D    L   ++ H +Q+  +        
Sbjct: 1   MISHEIDFVKLDPTQNMTLLV-RTEHPEEEHRDIALRLMAYEHLHAEQVGFVRKPGSPDA 59

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +R+         +C                          G   A++     +    
Sbjct: 60  DISLRM-AGGEFCGNACMALAALAAPPDELAGGHPVDVVLEASG---ARDLVRCRVLRHA 115

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            E   +   +PL  S ++       +   + L      VV  G P              L
Sbjct: 116 REYTCELA-MPLPESVERGADGVALVRYDDSLH----VVVETGRPDRALRTWAQRLAARL 170

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
               +      M  E  +  +  +  +  L    WERG      CGS A A         
Sbjct: 171 GEREDASLVGVMLYEPRSGHLTPLVHVPLLGSAVWERG------CGSGAAALAAYLAWKG 224

Query: 241 KTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEG 277
           +T+    V+  GG + +    +       V + G  +   EG
Sbjct: 225 RTSVTTRVRQPGGVMTVAADHDARGGLTGVRVQGTVRVVAEG 266


>gi|260887994|ref|ZP_05899257.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC
           35185]
 gi|330838527|ref|YP_004413107.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185]
 gi|260862245|gb|EEX76745.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC
           35185]
 gi|329746291|gb|AEB99647.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185]
          Length = 265

 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 62/227 (27%), Gaps = 24/227 (10%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
            A   +   + S  + CGN          +      F  E        +           
Sbjct: 52  HAEEALFRIEMSGGEFCGNATLSAAALAAAEGAESRFLVECSGAPEPLRAE----AHPLG 107

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
               L    +P A    ++  D F  G            VS+     +     DL   D 
Sbjct: 108 SGRWLARAEMPPAHEVRRISLDGFSFGG-------AAICVSLPGIAHLVVEAADLSAADY 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-----LTAACGSAACASVVA 235
                 L +         +        E   +R +             ACGS + A  +A
Sbjct: 161 DELLARLMRETDADAYGVVPF-ERMGREHFRIRPYVAVPSAKSHVFERACGSGSLALALA 219

Query: 236 -SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                 +    ++V+  GG LL+E       F+ GE      G +++
Sbjct: 220 EGSECGR----IAVEQPGGTLLVE--TGRRFFLEGEVLISCRGTVEL 260


>gi|115352440|ref|YP_774279.1| PhzF family phenazine biosynthesis protein [Burkholderia ambifaria
           AMMD]
 gi|115282428|gb|ABI87945.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria
           AMMD]
          Length = 293

 Score = 45.1 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 58/241 (24%), Gaps = 15/241 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
            +    D   D  +RI    G E+   G+                R         G+   
Sbjct: 52  FVCTPTDLDADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110

Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +             P      D    P+  +  + +       P          VV + +
Sbjct: 111 ELRELADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGAPWLVVRLTS 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             A   +  D                  ++   +   A         +     G G   A
Sbjct: 171 VEACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228

Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            GSA  A         +      T R  +     G + + + D+  +++ G      +G 
Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGT 288

Query: 279 L 279
            
Sbjct: 289 F 289


>gi|224109124|ref|XP_002315091.1| predicted protein [Populus trichocarpa]
 gi|222864131|gb|EEF01262.1| predicted protein [Populus trichocarpa]
          Length = 295

 Score = 44.8 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 60/234 (25%), Gaps = 24/234 (10%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +R       EV  CG+        L S     S   E      +    +         
Sbjct: 68  FRLRWFTPVA-EVNLCGHATLAASHTLFSNGLVSSDIIEFDTLSGILTAKKVPQSINPES 126

Query: 122 EPILDWK-------LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
               + K         P+  + +           +N   + +    + G+   +     D
Sbjct: 127 VSNGEAKESFLIELDFPVVPTTEFFIDAVSISKALNSAPIIDLKKTTFGDLFVVLPSGKD 186

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGSA 228
           +   +            +        I    +        + R      G+     CGSA
Sbjct: 187 VAEIN-------PEFGEILKCPGRGVIVSGVAPPESGFDFYSRFFCPKLGINEDPVCGSA 239

Query: 229 ACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
            CA     S  L K +          G L I   + N  V + G+A    EG +
Sbjct: 240 HCALAPYWSKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLRGKAVTVMEGSV 293


>gi|68473476|ref|XP_719296.1| hypothetical protein CaO19.13065 [Candida albicans SC5314]
 gi|46441108|gb|EAL00408.1| hypothetical protein CaO19.13065 [Candida albicans SC5314]
          Length = 302

 Score = 44.8 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 32/259 (12%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I   + +  D  IRI    G+E+   G+        L    K K        G ++ + 
Sbjct: 48  FILTPKSSIADYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQIIQEC 103

Query: 111 NRDGSISVDMGEPILDWKLIPLAR----------SFDKMDRDRFHIGPVNHLFLRNPFVV 160
                       P  +   +P               D    +           +  P ++
Sbjct: 104 GAGLVKISVEKTPNNNSNELPFLLSFQLPYFKFHEIDDKVIEELQHSWNGTNIIGKPVLI 163

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE---- 216
             G   A+F +       DL      + +  + +    + +    +     +        
Sbjct: 164 DAGPKWAVFQLGSGKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPA 223

Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA---VSVKM-----LGGGLLIEW------HDN 262
            GV    ACGS + A            +    + +        G  + ++       + +
Sbjct: 224 VGVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERGAKIQVKVNRLSTKNGD 283

Query: 263 NHVFMTGEAKKEWEGKLDI 281
             + + G A   +EG   I
Sbjct: 284 LSIHVGGHAITCFEGTYSI 302


>gi|170700637|ref|ZP_02891635.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria
           IOP40-10]
 gi|170134456|gb|EDT02786.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria
           IOP40-10]
          Length = 293

 Score = 44.8 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 58/241 (24%), Gaps = 15/241 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
            +    D   D  +RI    G E+   G+                R         G+   
Sbjct: 52  FVCTPTDPEADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110

Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +             P      D    P+  +  + D       P          VV + +
Sbjct: 111 ELREQADGWAFAAPPARFTPLDRADYPVLAAALRSDAIDPDAEPCAVDNGAPWLVVRLTS 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             A   +  D                  ++   +   A         +     G G   A
Sbjct: 171 AEACVGLAPDPAALGALVHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228

Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            GSA  A         +      T R  +     G + + + D+  +++ G      +G 
Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRDGRIAVRYDDDGTIWIGGHVVTVVDGT 288

Query: 279 L 279
            
Sbjct: 289 F 289


>gi|193077841|gb|ABO12717.2| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978]
          Length = 289

 Score = 44.8 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 86/286 (30%), Gaps = 43/286 (15%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPAIDSQADYQVRIFTP-QSEL 72

Query: 75  QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
              G+        ++     + K      +   G++    N    IS ++ +P +     
Sbjct: 73  PFAGHPTIGTAYALLEAGLIKAKEGRLVQQCAAGLVTLTVNDSNHISFELPKPKITP--- 129

Query: 131 PLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAI---FFVEDDLYHYDLASFGNL 186
                 D +  ++   I         N  +V +G    +      E  L      +    
Sbjct: 130 -----LDALQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLNALKQ 184

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLR-----TWERGVGLTAACGSAACASVVASGCLHK 241
            +     +          ++             +          G+ + AS +    +  
Sbjct: 185 FSLDMKVTGSTIYGFYEESNEHKRIEVRSFAPAYGVNEDPVCGSGNGSVASFIRYHGILP 244

Query: 242 TNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               V +   G      G L +E H +  + ++G A    +G + +
Sbjct: 245 AQNDVVLSSQGQALGREGQLQLELHQD-KILVSGAAVTCIDGTIKL 289


>gi|196014074|ref|XP_002116897.1| hypothetical protein TRIADDRAFT_60898 [Trichoplax adhaerens]
 gi|190580615|gb|EDV20697.1| hypothetical protein TRIADDRAFT_60898 [Trichoplax adhaerens]
          Length = 298

 Score = 44.8 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 84/289 (29%), Gaps = 39/289 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V+D     DN+T   +  ++ + N      +L         +  +R      +E+  CG
Sbjct: 24  VVLDA----DNLTEKDMKNIAREMNNSATGYVL----TSQRANFRLRYFTPSDAEITFCG 75

Query: 79  NGMRCVV-------RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           +     +       RF   +   K +  E   G++  + +  G   +    P+      P
Sbjct: 76  HVTLATLATIAKEKRFGADQGIVKQYDIEINAGLVKGEIDWSGKEPIISFFPLSINLD-P 134

Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP 191
           L   F+           ++ +    P ++       ++F    L    L           
Sbjct: 135 L--PFNHAQLAEALAINLDAIDQSKPILME-KTNRYVYFAIKSL--QQLKELNINQKTAK 189

Query: 192 MFSEGVNLSIARVTSLESLDLRTWER--------GVGLTAACGSAACASVVASGCLHKTN 243
           + +E  N+ +    +   +D  +           G+      GS+               
Sbjct: 190 VHAEQHNIILYCALTPHGVDENSHAHSRVFGPLIGIAEDPVTGSSQGPLTAYMVRNGMIP 249

Query: 244 RA-VSVKMLGGG---------LLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           +    V    G          + I   D   V ++G A   +   + I 
Sbjct: 250 QPLAKVNTEQGDFVGRPGRTTVYILRRDPIEVKVSGPAFHVFSADIQIP 298


>gi|241895470|ref|ZP_04782766.1| possible phenazine biosynthesis protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241871444|gb|EER75195.1| possible phenazine biosynthesis protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 287

 Score = 44.8 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 73/244 (29%), Gaps = 21/244 (8%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106
            +    ++  D  +RI     +E+   G+ M      +          +    E  +G++
Sbjct: 52  FVCTPTNSQADYRLRIFTP-QNELPFAGHPMIGSAYAVLKSGLIPKHGQYLVQECQQGLV 110

Query: 107 VAKENRDGSI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
                  G           P+   ++   +++      +      ++   +     +S  
Sbjct: 111 RIDVTDAGLFLTLPESKKSPLQAEQVKAFSKALGVSASEIHLAATIDVGAVWYTLQLSSA 170

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223
                   + +L    +A     +     + E    +   V S    +      G     
Sbjct: 171 EQVLALQPDMNLLSQAIAEGVTGVTVFGQYPENSQTNF-EVRSFAPNE------GADEDP 223

Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEG 277
            CGS      V        + +  V   G      G + +++ D+N + + G A+   +G
Sbjct: 224 VCGSGNGCVAVMVRDHQLLSSSDYVASQGSCLGRDGYVSVKFSDDNQILLGGFAEICIDG 283

Query: 278 KLDI 281
           +L I
Sbjct: 284 QLSI 287


>gi|297843128|ref|XP_002889445.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335287|gb|EFH65704.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 283

 Score = 44.4 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 67/244 (27%), Gaps = 34/244 (13%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVA 108
            +           +R       EV  CG+        L S     S T  F+T+ G L A
Sbjct: 57  FLTPIIGDFPRFRLRWFTPVA-EVDLCGHATLASAHVLFSTGLIDSETVKFDTLSGALTA 115

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           K                    I      D      F +  ++         ++      +
Sbjct: 116 KHL-----------------KIDDEIELDFPLVPTFEVNYIDDDLSLFSKALNGATIVDV 158

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSI----------ARVTSLESLDLRTWERG 218
              + D+    L+S+  ++   P   E                A  T            G
Sbjct: 159 KATKKDI-LVVLSSWEAVIELQPRLDEISKCPCEGMMVSAAASAESTYDFCSRYFAPRFG 217

Query: 219 VGLTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEW 275
           +      GSA CA     S  ++K +         GG L +    +   V + G+A    
Sbjct: 218 INEDPVTGSAHCALAHYWSLKMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAVTVM 277

Query: 276 EGKL 279
           EG +
Sbjct: 278 EGYV 281


>gi|126642335|ref|YP_001085319.1| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978]
          Length = 264

 Score = 44.4 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 29/250 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGN----GMRCVVRFLTSRMKRKSFTFETIRGIL 106
            +    D+  D  +RI     SE+   G+        ++     + K      +   G++
Sbjct: 25  FVLPAIDSQADYQVRIFTP-QSELPFAGHPTIGTAYALLEAGLIKAKEGRLVQQCAAGLV 83

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNP 165
               N    IS ++ +P +           D +  ++   I         N  +V +G  
Sbjct: 84  TLTVNDSNHISFELPKPKITP--------LDALQTEKLAEILKCKINTQWNAALVDVGAR 135

Query: 166 HAI---FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR-----TWER 217
             +      E  L      +     +     +          ++             +  
Sbjct: 136 WVVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIYGFYEESNEHKRIEVRSFAPAYGV 195

Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEA 271
                   G+ + AS +    +      V +   G      G L +E H +  + ++G A
Sbjct: 196 NEDPVCGSGNGSVASFIRYHGILPAQNDVVLSSQGQALGREGQLQLELHQD-KILVSGAA 254

Query: 272 KKEWEGKLDI 281
               +G + +
Sbjct: 255 VTCIDGTIKL 264


>gi|255019173|ref|ZP_05291299.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515]
          Length = 72

 Score = 44.0 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 4  SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQI 49
          + + F K+ G  N   ++D  G    + +    +D    L   ++     D I
Sbjct: 2  ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGI 54


>gi|149689924|ref|XP_001503650.1| PREDICTED: similar to Phenazine biosynthesis-like domain-containing
           protein (MAWD-binding protein) (Unknown protein 32 from
           2D-page of liver tissue) [Equus caballus]
          Length = 288

 Score = 44.0 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 63/228 (27%), Gaps = 16/228 (7%)

Query: 62  AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +R       EV  CG        V F   +    + TF T+ G L AK   DG +   
Sbjct: 65  FGLRWFTPAC-EVPLCGHATLASAAVLFHKIKNVNSTLTFVTLSGELRAKREEDGIVLDF 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              P        +         D            R   V      +  F     +   +
Sbjct: 124 PLYPAHPQDFHEVEDLIKTAIGDTLIQDICYSPDTRKLLVRLSDTYNRSFLENLKVNTQN 183

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG----SAACASVVA 235
           L    N         +G+ L++      ++     + R             + +  +V++
Sbjct: 184 LLQVENTGKV-----KGLILTLKGDPDGQAQAFDFYSRYFAPWLGVAEDPVTGSAHTVLS 238

Query: 236 SGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           S    +  +           GG L I  H +  V + G      EG L
Sbjct: 239 SYWSQQLGKKNMHACQCSCRGGELEISLHPDGRVDIRGSVAIVLEGTL 286


>gi|254251771|ref|ZP_04945089.1| hypothetical protein BDAG_00968 [Burkholderia dolosa AUO158]
 gi|124894380|gb|EAY68260.1| hypothetical protein BDAG_00968 [Burkholderia dolosa AUO158]
          Length = 293

 Score = 44.0 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 13/240 (5%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILV 107
            +    D   D  +RI    G    +    +     F+ S  + ++      +   G +V
Sbjct: 52  FVCTPTDPEADYRVRIFTPGGELPFAGHPTLGTAHAFVESGARPRTPGRLIQQCGVGRVV 111

Query: 108 AKENRDGSIS--VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
            +E  DG            LD    P   +  + D       P          VV + + 
Sbjct: 112 LREQPDGWAFAAPPARFTPLDRADYPALAAALRCDAIDPDAEPCAVDNGAPWLVVRLTSA 171

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
            A   +  D    +  +          ++   +   A         +     G+G     
Sbjct: 172 DACIGLAPDPAALEAITHRYGTHGVAAYAPHPDGGPATF--EIRCLMTGGGFGIGEDPVT 229

Query: 226 GSAACASVVASGCLHKTNRAV-SVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           GSA  A         +      +V+        G + + + D+   ++ G A    +G  
Sbjct: 230 GSANAALAGLLVRQQRRPGPSYTVRQGTAIGRDGRVFVRYDDDGTTWIGGRAVTVVDGTF 289


>gi|255559496|ref|XP_002520768.1| phenazine biosynthesis protein, putative [Ricinus communis]
 gi|223540153|gb|EEF41730.1| phenazine biosynthesis protein, putative [Ricinus communis]
          Length = 489

 Score = 44.0 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 62/232 (26%), Gaps = 16/232 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +R       EV+ CG+        + S     S   E      +    +   IS    
Sbjct: 258 FRLRWFTPVA-EVKLCGHATLAASHTIFSNGLVNSDIIEFDTLSGILTAKKVSEISKTDV 316

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
             I + +   L    +            +         ++  +   I         + + 
Sbjct: 317 SSIQNGEANELFL-IELNFPTVLSTEFNSVDLAPISKALNGASIIDIRRTTTADDLFVVL 375

Query: 182 -SFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTAACGSAAC 230
            S   +    P F + +       I    +        + R      G+     CGSA C
Sbjct: 376 PSAKAVSELQPQFDDILKCPGRGIIVSGVAPPESGFDFYSRFFCPKYGINEDPVCGSAHC 435

Query: 231 ASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
           A        L K +          G L I   + N  V + G+A    EG L
Sbjct: 436 ALAPYWGKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLRGKAVTVMEGSL 487


>gi|149910690|ref|ZP_01899326.1| predicted epimerase [Moritella sp. PE36]
 gi|149806229|gb|EDM66206.1| predicted epimerase [Moritella sp. PE36]
          Length = 267

 Score = 44.0 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 66/227 (29%), Gaps = 18/227 (7%)

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSI 116
            D  +R    +  EV  CG+G   +   L  +      +   FET+ G L          
Sbjct: 54  NDFNLRWFTPE-VEVNLCGHGTLAMAHILKQKGLVAIGEGIVFETLSGPLEVTVGEHDID 112

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
            +            P A        +   +  +          V  G  + I    +++ 
Sbjct: 113 MLF-----------PTAELEFDTLVNTVLLELLGLKLSDVVSYVQFGPKYLIEIRNEEIL 161

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA- 235
                +F  L             S        S     W  G+      GSA CA  V  
Sbjct: 162 RSLSPNFDGLNELEGRGVVVTAKSDFSHVDFVSRHFAPW-VGINEDPVTGSAHCALAVYW 220

Query: 236 SGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           +  L+K           GG + +E   N  V +TG A    EG + +
Sbjct: 221 AEKLNKVALKGFQASKRGGFVGVELMPNKKVKLTGSAITVIEGVIHV 267


>gi|239502909|ref|ZP_04662219.1| hypothetical protein AbauAB_11404 [Acinetobacter baumannii AB900]
          Length = 289

 Score = 43.6 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 87/279 (31%), Gaps = 29/279 (10%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72

Query: 75  QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
              G+        ++     + K      +   G++    N    IS ++ +P +     
Sbjct: 73  PFAGHPTIGTAYALLEAGLVKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132

Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                  ++ + +                 V+   N  A+   + DL      S    + 
Sbjct: 133 LQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAKAVLASQPDLNALKQFSLEMKVT 192

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
              ++      +  +   + S     +          G+ + AS +    +      V +
Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVNEDPVCGSGNGSVASFIRYHGILPAQNDVVL 251

Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              G      G L +E H +  + + G A    +G + +
Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289


>gi|260776098|ref|ZP_05884993.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607321|gb|EEX33586.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 232

 Score = 43.6 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 73/238 (30%), Gaps = 42/238 (17%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSIS 117
           D  +R    +  EV+ CG+G   V   L  + K     S TF T+ G+L  K        
Sbjct: 20  DMRLRWFTPE-VEVKLCGHGTLAVAHVLKQQGKIATGDSITFNTLSGLLSVKVLSS---- 74

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174
                              D    +  +    +   L     + +     + + + D   
Sbjct: 75  ---------------TYELDFPAPELEYNQHCSEERLN---ALGLSEQQVVSYCQFDSKE 116

Query: 175 ----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGS 227
                    +       +          +  A+ T   S  +  +     GV      GS
Sbjct: 117 LFELTNEQAVHDLSPDFSSLIRQPGRGIIVTAQSTQSNSDIISRYFAPWVGVNEDPVTGS 176

Query: 228 AACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A CA  +A     K ++ V         GG L IE  ++  V ++G A    +G L I
Sbjct: 177 AHCA--LAEFWAGKIDKPVLTAYQASSRGGYLDIERVESGRVTLSGSAVIALKGTLFI 232


>gi|323496470|ref|ZP_08101528.1| putative epimerase [Vibrio sinaloensis DSM 21326]
 gi|323318747|gb|EGA71700.1| putative epimerase [Vibrio sinaloensis DSM 21326]
          Length = 266

 Score = 43.6 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 65/235 (27%), Gaps = 32/235 (13%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118
           + D  +R    +  EV+ CG+G    V+ +               G  V      G +  
Sbjct: 52  TSDMRLRWFTPE-IEVKLCGHGTLATVQIMAECG-------LINLGESVCFNTLSGPLHA 103

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---- 174
                        L  S  ++D    H+       L     + +     + +   D    
Sbjct: 104 T------------LTHSGIELDFPIAHLNSAQQPDLDLVQALCLTPDDIVSYHTFDNKQL 151

Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSA 228
              +    L                  +  A+ +  E   +  +     GV      GSA
Sbjct: 152 IEVISEQVLNDLSPNFDAMRALPGRGVVITAQSSQQEYDVVSRYFAPWVGVNEDPVTGSA 211

Query: 229 ACASV--VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            CA     A+     T  A      GG +++       V ++G A     G + +
Sbjct: 212 HCALAPYWAAKLRRSTINAYQASNRGGEVMMTLQQGGRVTLSGSAVTVIRGNISV 266


>gi|15218739|ref|NP_171820.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis
           thaliana]
 gi|12083232|gb|AAG48775.1|AF332412_1 unknown protein [Arabidopsis thaliana]
 gi|3850584|gb|AAC72124.1| ESTs gb|H37641 and gb|AA651422 come from this gene [Arabidopsis
           thaliana]
 gi|332189424|gb|AEE27545.1| Phenazine biosynthesis PhzC/PhzF protein [Arabidopsis thaliana]
          Length = 286

 Score = 43.6 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 62/241 (25%), Gaps = 23/241 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +           +R       EV  CG+        L S     S T E      +   
Sbjct: 55  FLTPIIGDLPRFRLRWFTPVA-EVDLCGHATLASAHVLFSTGLVGSETVEFDTLSGILTA 113

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
               +                 +   D      + +  ++         ++      +  
Sbjct: 114 KHLKNDDDGEES----------SIELDFPVVPTYEVNYIDDDLSLFSKALNGATILDVKA 163

Query: 171 VEDDL------YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW---ERGVGL 221
            + DL      +   +     L        EG+ ++ A            +     G+  
Sbjct: 164 TKKDLLVVLSSWEAVIDLKPRLDEISKCPCEGMMVTAAASDGSTYDFCSRYFAPRFGINE 223

Query: 222 TAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
               GSA CA     S  ++K +         GG L +    +   V + G+A    EG 
Sbjct: 224 DPVTGSAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAVTVMEGY 283

Query: 279 L 279
           +
Sbjct: 284 V 284


>gi|255559494|ref|XP_002520767.1| phenazine biosynthesis protein, putative [Ricinus communis]
 gi|223540152|gb|EEF41729.1| phenazine biosynthesis protein, putative [Ricinus communis]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 66/239 (27%), Gaps = 17/239 (7%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRD 113
             ++    +R      SEV+ CG+        L S     S   E +   GIL AK   +
Sbjct: 62  NSSNPRFHLRWFTP-VSEVELCGHATLAASHALFSNGLLNSDIIEFVTLSGILTAKRIPE 120

Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
            S +      I   K        D            +   +      +            
Sbjct: 121 TSKTDGSSTQIGKTKE-DFLIELDFPSNQTTEFNAFDLDLISKALNGASIIDVKRTTATS 179

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTA 223
           D     L S   +    P   E +       I    +          R      G+    
Sbjct: 180 DDLLVVLPSARAVTELQPQIDEILQCPVGGIIVTGVAPSESGFDFVSRYFAPKFGINEDP 239

Query: 224 ACGSA-ACASVVASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279
             GSA  C +   S  L K++         GG L I + +    V + G+A    EG L
Sbjct: 240 VTGSAHCCLAPYWSKKLGKSDLMAYQASARGGILNIHFDEQKQRVLLRGKAVTVMEGSL 298


>gi|222424459|dbj|BAH20185.1| AT1G03210 [Arabidopsis thaliana]
          Length = 286

 Score = 43.2 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 62/241 (25%), Gaps = 23/241 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +           +R       EV  CG+        L S     S T E      +   
Sbjct: 55  FLTPIIGDLPRFRLRWFTPVA-EVDLCGHATLASAHVLFSTGLVGSETVEFDTLSGILTA 113

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
               +                 +   D      + +  ++         ++      +  
Sbjct: 114 KHLKNDDDGEES----------SIELDFPVVPTYEVNYIDDDLSLFSKALNGTTILDVKA 163

Query: 171 VEDDL------YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW---ERGVGL 221
            + DL      +   +     L        EG+ ++ A            +     G+  
Sbjct: 164 TKKDLLVVLSSWEAVIDLKPRLDEISKCPCEGMMVTAAASDGSTYDFCSRYFAPRFGINE 223

Query: 222 TAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278
               GSA CA     S  ++K +         GG L +    +   V + G+A    EG 
Sbjct: 224 DPVTGSAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAVTVMEGY 283

Query: 279 L 279
           +
Sbjct: 284 V 284


>gi|116786060|gb|ABK23955.1| unknown [Picea sitchensis]
          Length = 307

 Score = 43.2 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 63/235 (26%), Gaps = 15/235 (6%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
           D + +  +R       EV  CG+       FL S    K                +    
Sbjct: 73  DDAEEFDLRWFTP-LVEVDLCGHATLASAHFLFS-AFVKCNRVLFHTKSGTLTATKVERF 130

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVED 173
           + +     L  K        +      F    +    L N      V      A      
Sbjct: 131 NQNESATYLGRKNERFVIELNFPQVSVFDCVSMEIPLLSNTLRGLAVESVKKTACNDFIV 190

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGS 227
           +L   +L           +        I    + +      + R      GV     CGS
Sbjct: 191 ELASGELVE-NLQPEFDEIQRCSARGIIVTGLAPKQSGFDFFSRFFCPKLGVNEDPVCGS 249

Query: 228 AACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279
           A CA     +  L KT          GG L+++  ++   V + GEA     G L
Sbjct: 250 AHCALAPYWAKKLGKTELVAYQASKRGGKLVLQVVEDPQSVILQGEAVTVMLGSL 304


>gi|57524661|ref|NP_001003759.1| MAWD binding protein-like [Danio rerio]
 gi|50926029|gb|AAH79517.1| Zgc:101129 [Danio rerio]
          Length = 286

 Score = 43.2 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 65/231 (28%), Gaps = 9/231 (3%)

Query: 57  DASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +     +R      +E+  CG        V F   +       FET+ G L  +++ D 
Sbjct: 59  SSGSRFGLRWFTP-KTEIALCGHATLASAAVLFYLKKNANPVVVFETMSGELYVRQHEDS 117

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I               +      +  D           LR   +    +     F    
Sbjct: 118 IIMDFPLNTPQPQDQRKIKGFLKAVVGDLPIEDVCYSPALRWLMIRLADSCDRSKFTSLS 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
               DL           +         A+              GV     CGSA   +++
Sbjct: 178 PVAEDLLKSETTGEIKSVIVTIKGAPNAQPGYDFYSRFFAPWYGVAEDPVCGSAH--TIL 235

Query: 235 ASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           A     K N+           GG L +E  D+  V ++G A+   +G L +
Sbjct: 236 AGYWSEKLNKKKMLAYQCSSRGGELELEVRDDGRVNISGRAQIILQGTLKV 286


>gi|118474285|ref|YP_892632.1| hypothetical protein CFF8240_1498 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413511|gb|ABK81931.1| protein YddE [Campylobacter fetus subsp. fetus 82-40]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 64/256 (25%), Gaps = 30/256 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I   +DAS D ++R      SEV  CG+            +   S       G      
Sbjct: 50  FILSPKDASHDVWVRFFTP-TSEVPICGHATIAAHYARAIELGLDSTKVVQKTGAGNLLV 108

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHA 167
           + +     +    ++    I +   F      +         + L  + P  ++      
Sbjct: 109 DINRC--GNDYSIVMTQGEIKIGEPFSWQIVQKLTEALGIKSDDLNSKCPVCIASTGHSK 166

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGL 221
           +    +             L        G N            ++    R      G+  
Sbjct: 167 VMIAINLNSVLHSLKPNFELLISLSKEIGCNGYYVFTLDQN-AEILVHGRMFAPAIGINE 225

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVK------MLG------GGLLIEWHDNNH----V 265
               G+A                +  ++      M G      G + +           V
Sbjct: 226 DPVTGNANGPLGAYLVHYELFGNS-DLRSFKFKAMQGEAIGRTGVMEVNVTKEGTRPTLV 284

Query: 266 FMTGEAKKEWEGKLDI 281
            +TG A   +  +L++
Sbjct: 285 QITGRAVIVFSAELEV 300


>gi|217032382|ref|ZP_03437877.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128]
 gi|216945949|gb|EEC24565.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128]
          Length = 124

 Score = 42.8 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234
               L S   L  +        N++IA + + E++ L+T+ERGV   T ACG+   A  +
Sbjct: 10  NKEWLNSLNTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFI 69

Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274
           A+   + T +  ++       L +   ++  +F  G  +  
Sbjct: 70  AARIFYNTPKKAALIPKSNESLELSLKNDG-IFYKGAVRYI 109


>gi|169795320|ref|YP_001713113.1| putative phenazine biosynthesis-like protein [Acinetobacter
           baumannii AYE]
 gi|213158694|ref|YP_002319992.1| phenazine biosynthesis protein PhzF family [Acinetobacter baumannii
           AB0057]
 gi|215482853|ref|YP_002325056.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii
           AB307-0294]
 gi|301346776|ref|ZP_07227517.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB056]
 gi|301513208|ref|ZP_07238445.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB058]
 gi|301595950|ref|ZP_07240958.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB059]
 gi|332850430|ref|ZP_08432750.1| phenazine biosynthesis protein, PhzF family [Acinetobacter
           baumannii 6013150]
 gi|332871880|ref|ZP_08440292.1| phenazine biosynthesis protein, PhzF family [Acinetobacter
           baumannii 6013113]
 gi|169148247|emb|CAM86110.1| conserved hypothetical protein; putative Phenazine
           biosynthesis-like protein [Acinetobacter baumannii AYE]
 gi|213057854|gb|ACJ42756.1| phenazine biosynthesis protein PhzF family [Acinetobacter baumannii
           AB0057]
 gi|213985698|gb|ACJ55997.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii
           AB307-0294]
 gi|332730701|gb|EGJ62012.1| phenazine biosynthesis protein, PhzF family [Acinetobacter
           baumannii 6013150]
 gi|332731094|gb|EGJ62395.1| phenazine biosynthesis protein, PhzF family [Acinetobacter
           baumannii 6013113]
          Length = 289

 Score = 42.5 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 29/279 (10%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72

Query: 75  QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
              G+        ++     + K      +   G++    N    IS ++ +P +     
Sbjct: 73  PFAGHPTIGTAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132

Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                  +  + +                 V+   N  A+   + DL      S    + 
Sbjct: 133 LQTEKLAEFLKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLNALKQFSLDMKVT 192

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
              ++      +  +   + S     +          G+ + AS +    +      V +
Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVYEDPVCGSGNGSVASFIRYHGILPAQNDVVL 251

Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              G      G L +E H +  + + G A    +G + +
Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289


>gi|196014380|ref|XP_002117049.1| hypothetical protein TRIADDRAFT_61085 [Trichoplax adhaerens]
 gi|190580271|gb|EDV20355.1| hypothetical protein TRIADDRAFT_61085 [Trichoplax adhaerens]
          Length = 298

 Score = 42.5 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 81/290 (27%), Gaps = 41/290 (14%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V D     DN+T   +  ++ + N      +L         D  +R      +E+  CG
Sbjct: 24  VVFDA----DNLTDKDMKNIAREMNISETGYVL----TSQRADFRLRYFTPSDAEITFCG 75

Query: 79  NGMRCVVRFLTSR-------MKRKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLI 130
           +     +  +             K +  E   G+   + +       +    P ++   +
Sbjct: 76  HVTLATLAMIAREKRFGADQGIVKQYNIEINAGLFKGEIDWSGNEPIISFFPPPINLDPV 135

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           P     +           ++ +    P ++   N   ++F    L    L          
Sbjct: 136 PF----NHAQLAEALAINLDIIDQSKPILIERTNR-YVYFAIKSLQE--LKELNVNQETA 188

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER--------GVGLTAACGSAACASVVASGCLHKT 242
             ++E  N+ +   ++   +D              G+      GS+              
Sbjct: 189 KAYAEQHNIILYCASTPHGVDENNHAHSRVFAPLVGIAEDPVTGSSQGPLTAYMVQNGMV 248

Query: 243 NRAV-SVKMLGGG-------LLIEWHDNN--HVFMTGEAKKEWEGKLDIK 282
            +++  V    G          +     +   V ++G A   +   + I 
Sbjct: 249 PQSLSKVNTEQGDFVGRPGRATVYILGRDPIEVKVSGPAFHVFSADMQIP 298


>gi|225572940|ref|ZP_03781695.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039698|gb|EEG49944.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM
          10507]
          Length = 173

 Score = 42.5 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 1  MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59
          M    +  ++ +G G   L++D     + +    +  +         D ++        +
Sbjct: 30 MCDHRIKMSRYQGQGTDCLILDPNQNQELLAGKKVELICRRSLGIGGDSVLY--GPILEN 87

Query: 60 VDAFIRIINCD 70
            A ++I   +
Sbjct: 88 GKARMKIFQPE 98


>gi|260554432|ref|ZP_05826653.1| phenazine biosynthesis protein phzF [Acinetobacter baumannii ATCC
           19606]
 gi|260410974|gb|EEX04271.1| phenazine biosynthesis protein phzF [Acinetobacter baumannii ATCC
           19606]
          Length = 289

 Score = 42.5 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 87/279 (31%), Gaps = 29/279 (10%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72

Query: 75  QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
              G+        ++     + K      +   G++    N    IS ++ +P +     
Sbjct: 73  PFAGHPTIGTAYALLEAGLVKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132

Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
                  ++ + +                 V+   N  A+   + DL      S    + 
Sbjct: 133 LQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAKAVLASQPDLNALKQFSLDMKVT 192

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
              ++      +  +   + S     +          G+ + AS +    +      V +
Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVYEDPVCGSGNGSVASFIRYHGILPAQNDVVL 251

Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              G      G L +E H +  + + G A    +G + +
Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289


>gi|68473711|ref|XP_719180.1| hypothetical protein CaO19.5620 [Candida albicans SC5314]
 gi|46440986|gb|EAL00287.1| hypothetical protein CaO19.5620 [Candida albicans SC5314]
          Length = 309

 Score = 42.5 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 47/270 (17%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILV 107
            I   + +  D  IRI    G+E+   G+        L    K K           G  +
Sbjct: 48  FILTPKSSIADYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKPNDNGQIIQECGAGL 107

Query: 108 AKENRDGSISVDMGEPILDWKLIPLAR----------SFDKMDRDRFHIGPVNHLFLRNP 157
            K + + + + +      +   +P               D    +           +  P
Sbjct: 108 VKISVEKTPNNNNNNNNNNSNELPFLLSFELPYFKFHEIDDKVIEELQHSWNGTNIIGKP 167

Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE- 216
            ++  G   A+F +       DL      + +  + +    + +    +     +     
Sbjct: 168 VLIDAGPKWAVFQLGSGKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNI 227

Query: 217 ---RGVGLTAACGSAACASVVAS--------------GCLHKT---NRAVSVKM-----L 251
               GV    ACGS + A                       K    +  + VK+      
Sbjct: 228 APAVGVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLSTK 287

Query: 252 GGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            G L I           G A   +EG   I
Sbjct: 288 NGDLSIHVG--------GHAITCFEGTYSI 309


>gi|253584228|ref|ZP_04861426.1| phenazine biosynthesis protein [Fusobacterium varium ATCC 27725]
 gi|251834800|gb|EES63363.1| phenazine biosynthesis protein [Fusobacterium varium ATCC 27725]
          Length = 301

 Score = 42.5 bits (98), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 62/256 (24%), Gaps = 30/256 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILV 107
            I        D  +R       EV  CG+        +      K       +T  GIL 
Sbjct: 51  FIFSSDSQEYDVHVRFFTPLK-EVPICGHATIAAHYVIALENNLKEKTCIRQKTGAGILP 109

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGN 164
            +    G+        ++    +      +  D  R         N L    P  +    
Sbjct: 110 VEIEPLGN----SYNIVMTQGKVEFGNIIEGNDLGRLVSALGIDNNDLITEAPVQIVSTG 165

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------G 218
              +     D       +       +       N            D+    R      G
Sbjct: 166 HSKVMIGIKDYQQLHNLTPDMRELNNLSEKINCNGYFVFTFDSNEADILIKGRMFAPAIG 225

Query: 219 VGLTAACGS--AACASVVASGCLHKTNRAVSVKMLGG---------GLLIEWHDNNHVFM 267
           +      G+      + +    L + +  +      G          + +   +   V +
Sbjct: 226 IEEDPVTGNANGPVGAYIVKYKLAEFDDNLKFSAKQGMSIDREGKINVNVSIENGEPVKV 285

Query: 268 --TGEAKKEWEGKLDI 281
             +G A   ++ ++++
Sbjct: 286 QVSGTATVVFKTEIEL 301


>gi|134101372|ref|YP_001107033.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009568|ref|ZP_06567541.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913995|emb|CAM04108.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 236

 Score = 42.5 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 58/242 (23%), Gaps = 23/242 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVA 108
            +        D  +RI   DG E+   G+                R+        G  + 
Sbjct: 7   FVLPPTTPEADYRLRIFTPDG-ELPFAGHPTLGSAHAWLENGGTPRRDDRVVQECGAGLV 65

Query: 109 KENRDGSISVDMGEPIL---DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGN 164
           + +R   +      P +     +   L          R  +     +     + V  +  
Sbjct: 66  EVHRGEGVLSFAAPPTIRDGALEQEFLDEVVTAFGISRDQVLDHQWVDNGPGWAVVRLAT 125

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
              +  +E DL     A  G + A          L                  GV     
Sbjct: 126 AQEVLALEPDLSRIPTAMVGAVGAYPEGSPFEFELRTFAP-----------GVGVAEDPV 174

Query: 225 CGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           CGS   +                V         G + I    +  V++ G       G +
Sbjct: 175 CGSMNASVGQWLTRTGAAPARYRVSQGARLGRAGDITITADQDGAVWVGGATATRIRGTI 234

Query: 280 DI 281
           ++
Sbjct: 235 NL 236


>gi|255635872|gb|ACU18283.1| unknown [Glycine max]
          Length = 197

 Score = 42.5 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 218 GVGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274
           GV     CG A CA     S  L K +         GG L +   + N  V + G+A K 
Sbjct: 131 GVNEDPVCGGAHCALAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKV 190

Query: 275 WEG 277
            EG
Sbjct: 191 MEG 193


>gi|7271069|emb|CAB77656.1| hypothetical protein [Candida albicans]
          Length = 302

 Score = 42.5 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 69/260 (26%), Gaps = 34/260 (13%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I   + +     IRI    G+E+   G+        L    K K        G ++ + 
Sbjct: 48  FILTPKSSIAXYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQIIQEC 103

Query: 111 NRDGSISVDMGEPILDWKLIPLAR----------SFDKMDRDRFHIGPVNHLFLRNPFVV 160
                       P  +   +P               D    +           +  P ++
Sbjct: 104 GAGLVKISVEKTPNNNSNELPFLLSFELPYFKFHEIDDKVIEELQHSWNGTNIIGKPVLI 163

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE---- 216
             G   A+F +       DL      + +  + +    + +    +     +        
Sbjct: 164 DAGPKWAVFQLGSGKEVLDLNXDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPA 223

Query: 217 RGVGLTAACGSAACASVVAS--------------GCLHK-TNRAVSVKMLGGGLLIEWHD 261
            GV    ACGS + A                       K   R   +++    L  + + 
Sbjct: 224 VGVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLTTK-NG 282

Query: 262 NNHVFMTGEAKKEWEGKLDI 281
           +  + + G A   +EG   I
Sbjct: 283 DLSIHVGGHAITCFEGTYSI 302


>gi|169632971|ref|YP_001706707.1| hypothetical protein ABSDF1228 [Acinetobacter baumannii SDF]
 gi|169151763|emb|CAP00576.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 289

 Score = 42.5 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 29/279 (10%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPAIDSQADYQVRIFTP-QSEL 72

Query: 75  QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130
              G+        ++     + K      +   G++    N    IS ++ +P +     
Sbjct: 73  PFAGHPTIGTAYALLEAGLVKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132

Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
              +   ++ + +                 V+   N  A+   + DL      S    + 
Sbjct: 133 LQTQKLAEILKCKINTQWNAALVDVGARWVVLQAVNAKAVLASQPDLNALKQFSLEMKVT 192

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248
              ++      +  +   + S     +          G+ + AS +    +      V +
Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVNEDPVCGSGNGSVASFIRYHSILPAQNDVML 251

Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
              G      G L +E H +  + + G A    +G + +
Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289


>gi|226306081|ref|YP_002766041.1| phenazine biosynthesis protein [Rhodococcus erythropolis PR4]
 gi|226185198|dbj|BAH33302.1| putative phenazine biosynthesis protein [Rhodococcus erythropolis
           PR4]
          Length = 289

 Score = 42.5 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 15/228 (6%)

Query: 63  FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
            IR  +    EV  CG+        LT R    +FTFET  G +      D         
Sbjct: 65  RIRYFSPIA-EVPFCGHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGRSTATF 123

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDLYHYDLA 181
             ++  + P+  +          +            +   GN H  +   +   +     
Sbjct: 124 ISVEPSVSPIDHAVLTALLGLIGVDSSALDARYPAMLSYAGNTHPIVVLRDQSTFDEFTF 183

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241
               +            ++I       + + R       +     + + A+         
Sbjct: 184 DPVAMRTLMDAQGWAGTVTILHPLDDNTFEARNLFPVGNIVEDPATGSAAASTGGYLRKL 243

Query: 242 ----TNRAVSVKMLGGG-------LLIEWHDNNHVFMTGEAKKEWEGK 278
               T R +++    G        L ++   +  + +TG A    +G+
Sbjct: 244 EPAATPRRITIHQ--GRHVGRPSVLEVDIPVDGGISVTGTAVPVVDGQ 289


>gi|323438768|gb|EGA96507.1| hypothetical protein SAO11_2378 [Staphylococcus aureus O11]
 gi|323441648|gb|EGA99295.1| hypothetical protein SAO46_2424 [Staphylococcus aureus O46]
          Length = 257

 Score = 42.1 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 68/259 (26%), Gaps = 24/259 (9%)

Query: 32  SDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           +   N L    +   +Q+  I   Q D   D  + +     S  + CGN     +  L  
Sbjct: 15  ASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVM-----SGNEFCGNATMSYIHHLQE 69

Query: 91  RMKRKSFTFETI-RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
               K   F+    G     +           +     +++P   +          I   
Sbjct: 70  SHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYE 129

Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
            ++    P                      + ++      +  +     +          
Sbjct: 130 TYVHYVIPVKQVTTEIQH-----------LVETYVREQQWNHKYKTVGMMLFDEQRQFLQ 178

Query: 210 LDLRTWE-RGVGLTAACGSAACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NN 263
             +   E + +    +CGS   +  +  +   +   +  +V   GG +L+          
Sbjct: 179 PLIYIPEIQSLIWENSCGSGTASIGIFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGY 238

Query: 264 HVFMTGEAKKEWEGKLDIK 282
              + G+      GK  I+
Sbjct: 239 QTSIKGQVTTVATGKAYIE 257


>gi|196014378|ref|XP_002117048.1| hypothetical protein TRIADDRAFT_61084 [Trichoplax adhaerens]
 gi|190580270|gb|EDV20354.1| hypothetical protein TRIADDRAFT_61084 [Trichoplax adhaerens]
          Length = 297

 Score = 42.1 bits (97), Expect = 0.092,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 40/289 (13%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78
           +V D     DN+T   +  ++ + NT     +L         D  +R      +E+  CG
Sbjct: 24  VVFDA----DNLTDKDMKNIAREMNTSTTGYVL----TSQRADFRLRYFTPSDAEITFCG 75

Query: 79  NGMRCVVRFLTSR-------MKRKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLI 130
           +     +  +             K +  E   G+   + +       +    P ++   +
Sbjct: 76  HVTLATLAMIAREKRFGADQGIVKQYNIEINAGLFKGEIDWSGNEPIISFFPPPINLDPV 135

Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
           P     +           ++ +    P ++   N   ++F    L    L          
Sbjct: 136 PF----NHAQLAEALAINLDIIDQSKPILIERTNR-YVYFAIKSLQE--LKELNVNQETA 188

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER-------GVGLTAACGSAACASVVASGCLHKTN 243
             ++E  N+ +   ++   +D             G+      GS+               
Sbjct: 189 KAYAEQHNIILYCASTPHGVDENNHAHSRVFAPVGIAEDPVTGSSQGPLTAYMVQNGMVP 248

Query: 244 RAV-SVKMLGGG-------LLIEWHDNN--HVFMTGEAKKEWEGKLDIK 282
           +++  V    G          +     +   V ++G A   +   + I 
Sbjct: 249 QSLSKVNTEQGDFVGRPGRATVYILGRDPIEVKVSGPAFHVFSADMQIP 297


>gi|238883037|gb|EEQ46675.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 305

 Score = 42.1 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 29/259 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRG- 104
            I   + +  D  IRI    G+E+   G+        L    K K         E   G 
Sbjct: 48  FILTPKSSIADYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKPNDNGQIIQECGAGL 107

Query: 105 -ILVAKENRDGSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             +  ++  + + +     P L    +P  +    D    +           +  P ++ 
Sbjct: 108 VKISVEKTPNNNNNNSNELPFLLSFQLPYFKFHEIDDKVIEELQHSWNGTNIIGKPVLID 167

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE----R 217
            G   A+F +       DL      + +  + +    + +    +     +         
Sbjct: 168 AGPKWAVFQLGSGKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPAV 227

Query: 218 GVGLTAACGSAACASVVAS--------------GCLHK-TNRAVSVKMLGGGLLIEWHDN 262
           GV    ACGS + A                       K   R   +++    L  + + +
Sbjct: 228 GVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLTTK-NGD 286

Query: 263 NHVFMTGEAKKEWEGKLDI 281
             + + G A   +EG   I
Sbjct: 287 LSIHVGGHAITCFEGTYSI 305


>gi|282899896|ref|ZP_06307857.1| Phenazine biosynthesis PhzC/PhzF protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195166|gb|EFA70102.1| Phenazine biosynthesis PhzC/PhzF protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 267

 Score = 42.1 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 34/238 (14%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV 107
            +    D      +R       EV  CG+        L S       ++  F T  G+L+
Sbjct: 52  FLLPENDG---FNLRWFTPTT-EVPLCGHATLASAHVLWSEGYLSPEQTARFYTKSGLLI 107

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           AK+  D              + +PL      +      +           ++V + +P  
Sbjct: 108 AKKQDDWIELDFPVNHSQIVEPLPLLNEVLGVGYKSVSLN-------SLGYLVELASPQL 160

Query: 168 IFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           +  ++ DL    L       + +   +  + V+   A    ++   +             
Sbjct: 161 VRQIQPDLPQMRLLPVRNVIVTSTGDLEYDFVSRFFAPGFGIDEDPV------------- 207

Query: 226 GSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            + A    +A    HK  +           GG L + +   N V ++G+A     G+L
Sbjct: 208 -TGAAHCCLAPFWRHKLQKDTFLAYQASQRGGILKVTYSGGNRVLLSGQAITIIRGEL 264


>gi|197100731|ref|NP_001124957.1| phenazine biosynthesis-like domain-containing protein [Pongo
           abelii]
 gi|75042410|sp|Q5RDZ1|PBLD_PONAB RecName: Full=Phenazine biosynthesis-like domain-containing protein
 gi|55726496|emb|CAH90016.1| hypothetical protein [Pongo abelii]
          Length = 288

 Score = 42.1 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 63/226 (27%), Gaps = 8/226 (3%)

Query: 62  AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +R      SEV  CG        V F   +      TF T+ G L A+   DG I   
Sbjct: 65  FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMTSMLTFVTLSGELRARRAEDGIILDF 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYH 177
              P        +         +            R     +  + +   +  ++ +  +
Sbjct: 124 PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTRKLLIRLSDVYDRSFLENLKVNTEN 183

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
                    +    +  +G      +     S     W   V      GSA A  S   S
Sbjct: 184 LLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VAVAEDPVTGSAHAVLSSYWS 242

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L K           GG L I    +  V +TG A    EG L +
Sbjct: 243 QHLGKKEMHAFQCSRRGGELGISLRPDGRVDITGSAAVVLEGTLTV 288


>gi|321459854|gb|EFX70903.1| hypothetical protein DAPPUDRAFT_217034 [Daphnia pulex]
          Length = 288

 Score = 42.1 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 86/270 (31%), Gaps = 25/270 (9%)

Query: 27  HDNITSDAINALSTDDNTHFDQIMLIHDFQ--DASVDAFIRIINCDGSEVQSCGNGMRCV 84
            +++  +    ++ + N      + I + +  + S    +R       EV  CG+     
Sbjct: 30  ENDLPENLKRKIAAEMNLSETAFVTIENGETFEKSSKFALRWFTP-THEVDLCGHATLAT 88

Query: 85  VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144
              +  ++  K    E      + K  ++   S+ +  P+           ++  +    
Sbjct: 89  AAIIFHKLGNKEKAIEFNTLSGILKAIQENDSSITLDFPLNPSS------PYEAQNLKDI 142

Query: 145 HIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
                N+  +++    S      +     +   DL   +  +   L  +     +GV ++
Sbjct: 143 IRVVANNFEIQDVQHCSTTQKLLLRLADKYKRKDLEDLNPLTQELLTCESSGVVKGVIVT 202

Query: 201 IARVTSLESLDLRTWER---GVGLTAACGSAACASVVASGCLHKTNRAVSVKML-----G 252
           +    +        +     G+     CGS   A  V +    K       +       G
Sbjct: 203 LQGNENEGYDFYSRYFAPWVGIPEDPVCGS---AHTVLAAYWEKVYNKDQFRARQCSKRG 259

Query: 253 GGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           G L I+      V +TG+     EGK+ IK
Sbjct: 260 GDLNIKII-GQRVKLTGQVAHVLEGKIRIK 288


>gi|302752339|gb|ADL66516.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
          Length = 257

 Score = 42.1 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 67/259 (25%), Gaps = 24/259 (9%)

Query: 32  SDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90
           +   N L    +   +Q+  I   Q D   D  + +     S  + CGN     +  L  
Sbjct: 15  ASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVM-----SGNEFCGNATMSYIHHLQE 69

Query: 91  RMKRKSFTFETI-RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
               K   F+    G     +           +     +++P   +          I   
Sbjct: 70  SHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYE 129

Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
            ++    P                      + +F         +     +          
Sbjct: 130 TYVHYVIPVKQVTTEIQH-----------LVEAFVREQQWSHKYKTVGMMLFDEQRQFLQ 178

Query: 210 LDLRTWE-RGVGLTAACGSA-ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD----NN 263
             +   E + +    +CGS  A   V  +   +   +  +V   GG +L+          
Sbjct: 179 PLIYIPEIQSLIWENSCGSGTASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGY 238

Query: 264 HVFMTGEAKKEWEGKLDIK 282
              + G+      GK  I+
Sbjct: 239 QTSIKGQVTTVATGKAYIE 257


>gi|15603368|ref|NP_246442.1| hypothetical protein PM1503 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|18202816|sp|Q9CKV2|Y1503_PASMU RecName: Full=Uncharacterized isomerase PM1503
 gi|12721889|gb|AAK03587.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 289

 Score = 41.7 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 72/270 (26%), Gaps = 26/270 (9%)

Query: 26  CHDNITSDAINALSTDDNTHFDQI---MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82
             D +T   +  ++   N     +   + +H   ++S    +RI   D     +    + 
Sbjct: 28  QADGLTDQQMQLIARQFN-----LSETVFVHQTTESSAVRKLRIFTPDYELPFAGHPTIG 82

Query: 83  CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142
                       +++  +T  G++                  ++          D     
Sbjct: 83  AAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQNHIDVEV--------IDDNLPQ 134

Query: 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA 202
              +  ++   +     ++ G+   +  +   L           L +  +    + L   
Sbjct: 135 YTQLLGLSESDIAQIAWINTGSRQLLIQL-TSLNALKTCQIHPALFQQIVKQSALYLWFV 193

Query: 203 RVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-------L 255
                           V      GSAA            T     +    G        L
Sbjct: 194 EQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIYQ--GDEIQRPNRL 251

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285
            ++  ++  +++ G+      G+L + +G+
Sbjct: 252 TLQVDESETIYVGGKVIAVGCGELFVPSGE 281


>gi|229491382|ref|ZP_04385206.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus
           erythropolis SK121]
 gi|229321667|gb|EEN87464.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus
           erythropolis SK121]
          Length = 329

 Score = 41.7 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 82/273 (30%), Gaps = 21/273 (7%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV-DAFIRIINCDGSEVQSC 77
           +V+D RG    +    + +++ +     +   LI      +   + IR  +    EV  C
Sbjct: 65  VVLDARG----LDDSELQSVAAEIGY-AETAFLIEPALGGNPRHSRIRYFSPIA-EVPFC 118

Query: 78  GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137
           G+        LT R    +FTFET  G +      D   +       ++  + P+  +  
Sbjct: 119 GHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGTSTATFTSVEPSVSPIDHAVL 178

Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196
                   +            +   GN H  +   +   +         +          
Sbjct: 179 TALLGLIGVDSSALDARYPAMLSYAGNTHPIVVLRDQSTFDEFTFDPSAMRTLMDAQGWA 238

Query: 197 VNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK----TNRAVSVKMLG 252
             ++I       + + R       +     + + A+             T R +++    
Sbjct: 239 GTVTILHPLDDNTFEARNLFPVGNIVEDPATGSAAASTGGYLRKLEPAATPRRITIHQ-- 296

Query: 253 GG-------LLIEWHDNNHVFMTGEAKKEWEGK 278
           G        L +E   +  + +TG A    +G+
Sbjct: 297 GRHVGRPSVLAVEIPVDGGISVTGTAVPVVDGQ 329


>gi|301172750|ref|NP_002449.2| mucin-5B precursor [Homo sapiens]
 gi|308153579|sp|Q9HC84|MUC5B_HUMAN RecName: Full=Mucin-5B; Short=MUC-5B; AltName: Full=Cervical mucin;
           AltName: Full=High molecular weight salivary mucin MG1;
           AltName: Full=Mucin-5 subtype B, tracheobronchial;
           AltName: Full=Sublingual gland mucin; Flags: Precursor
          Length = 5762

 Score = 41.7 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 40/199 (20%), Gaps = 23/199 (11%)

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            C               +  S   +T      A+   D  +      P      I  +  
Sbjct: 320 RCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGC 379

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                    H G             S        +   DL                    
Sbjct: 380 LPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 423

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248
             ++      S     L           +  C  ++   +        T+       V++
Sbjct: 424 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTL 483

Query: 249 KMLGGGLLIEWHDNNHVFM 267
            + GG   I    +  VF+
Sbjct: 484 SLDGGDTAIRVQADGGVFL 502


>gi|114052683|ref|NP_001039351.1| phenazine biosynthesis-like domain-containing protein [Bos taurus]
 gi|110279047|sp|Q2HJF4|PBLD_BOVIN RecName: Full=Phenazine biosynthesis-like domain-containing protein
 gi|88682907|gb|AAI05466.1| Phenazine biosynthesis-like protein domain containing [Bos taurus]
 gi|296472115|gb|DAA14230.1| phenazine biosynthesis-like domain-containing protein [Bos taurus]
          Length = 288

 Score = 41.7 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 63/224 (28%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +R      +EV  CG        V F   +    + TF T+ G L A++  DG +   
Sbjct: 65  FGLRWFTP-QNEVPLCGHATLASAAVLFHKIKNVHSTLTFVTMSGELKARKEEDGIVLDL 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              P    KL  +         D            +   V      +  F     +   +
Sbjct: 124 PLYPAHPQKLHEVEDLIKTAIGDTLVQDVRYSPDTKKLLVRLSDTYNRSFLESLTVNTEN 183

Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
           L             +  +G      +     S     W  GV      GSA    S   S
Sbjct: 184 LLQVETTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-YGVAEDPVTGSAHTVLSSYWS 242

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K +         GG L I    +  V + G A    EG L
Sbjct: 243 EQLGKKDLHAFQCSNRGGELTISLRSDGRVDIKGGAALVLEGTL 286


>gi|296086727|emb|CBI32362.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score = 41.3 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 19/231 (8%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +R       EV  CG+       FL +    K    E I   G+L A++   G+ S  
Sbjct: 107 FRLRWFTPTT-EVNLCGHATLAAAHFLFTSSLMKGNMIEFITLSGVLTARKVMQGNKSDA 165

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +     + +    +   D                +     ++  +   I   E D     
Sbjct: 166 LKYENGEAQEH-FSVELDFPIVPMVEYNSAEVASISK--ALNGASVIDIKKTEGDDLFVV 222

Query: 180 LASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTAACGSAA 229
           L S   ++   P F +   L     I    +    +   + R      G+     CGSA 
Sbjct: 223 LPSGKTVVDIEPQFDDIQKLPGRGLIITGLAPPESEFDFFSRFFCPKLGIKEDPVCGSAH 282

Query: 230 CASV-VASGCLHKTNRAVSVKML-GGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           C+     S  L K +          G + I   + N  V + G+A    EG
Sbjct: 283 CSLAPYWSQKLGKCDLLAYAASPRSGRVDIHLDEQNQRVLLRGKAVTVMEG 333


>gi|225436978|ref|XP_002276977.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 303

 Score = 41.3 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 19/231 (8%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +R       EV  CG+       FL +    K    E I   G+L A++   G+ S  
Sbjct: 73  FRLRWFTPTT-EVNLCGHATLAAAHFLFTSSLMKGNMIEFITLSGVLTARKVMQGNKSDA 131

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
           +     + +    +   D                +     ++  +   I   E D     
Sbjct: 132 LKYENGEAQEH-FSVELDFPIVPMVEYNSAEVASISK--ALNGASVIDIKKTEGDDLFVV 188

Query: 180 LASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTAACGSAA 229
           L S   ++   P F +   L     I    +    +   + R      G+     CGSA 
Sbjct: 189 LPSGKTVVDIEPQFDDIQKLPGRGLIITGLAPPESEFDFFSRFFCPKLGIKEDPVCGSAH 248

Query: 230 CASV-VASGCLHKTNRAVSVKML-GGGLLIEWHD-NNHVFMTGEAKKEWEG 277
           C+     S  L K +          G + I   + N  V + G+A    EG
Sbjct: 249 CSLAPYWSQKLGKCDLLAYAASPRSGRVDIHLDEQNQRVLLRGKAVTVMEG 299


>gi|239626193|ref|ZP_04669224.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520423|gb|EEQ60289.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 284

 Score = 41.3 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 14/193 (7%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112
            +    D  +      G EV  CG+              + +  +T ET  GIL      
Sbjct: 51  SESGRADLKLEYFTPTG-EVPLCGHATVGTFVVLRHLHMLDKPCYTIETKSGILRVTAGE 109

Query: 113 DGSISVDMGEPILD--WKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           DG I ++   P        + L R F  D +  D         L      + S      +
Sbjct: 110 DGLILMEQNAPRFYETLDKVDLQRCFCPDIIADDMPVQIVSTGLKDILVPISSPAALGDM 169

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
                ++           +    +  E   L+           L     G+   +A G++
Sbjct: 170 IPDFAEVSRLSREKDCVGVHAFSLMKEAGELTAVC---RNFAPLY----GINEESATGTS 222

Query: 229 ACASVVASGCLHK 241
            CA          
Sbjct: 223 NCALACYLYQYGL 235


>gi|163839671|ref|YP_001624076.1| MFS transporter [Renibacterium salmoninarum ATCC 33209]
 gi|162953147|gb|ABY22662.1| MFS transporter [Renibacterium salmoninarum ATCC 33209]
          Length = 737

 Score = 41.3 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 12/219 (5%)

Query: 64  IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123
           IR  +     V  CG+        L  R    S+ F+T  G +  + ++ G  S+     
Sbjct: 519 IRYFSPYAG-VPFCGHATVATAVALAERYGVGSYLFDTKSGEIKLETSQHGD-SITASFT 576

Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183
            ++ K   ++        +   +   +      P +   GNPH +  + +DL        
Sbjct: 577 SVEPKGTEISAEVLATLLELLGLTAADLRVDYPPRIAYAGNPHPVLVISEDLIFDSFEFD 636

Query: 184 GNLLAKHPMFSEGV-NLSIARVTSLESLDLRTWERGVGLT--AACGSAACASVVASGCLH 240
             L+ +          +++ R+ + ++ + R       +T   A GSAA +       L 
Sbjct: 637 PALIRQLMDQQGWPGTITVLRLLNAQTFEARNLFPVGVITEDPATGSAAASVGAYLRALG 696

Query: 241 KTNRAVSVKMLGGG-------LLIEWHDNNHVFMTGEAK 272
                  V++  G        L ++  ++  + +TG A 
Sbjct: 697 LVQTPTQVQIQQGRHVGRPSILEVDIPEHGGITVTGSAT 735


>gi|257463928|ref|ZP_05628313.1| hypothetical protein FuD12_08764 [Fusobacterium sp. D12]
          Length = 255

 Score = 41.3 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 32/259 (12%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82
            R  +  ++      L    N + +Q+  I            + +   G E   CGN  R
Sbjct: 23  NRENYAEVS----RYLMEYGNVYCEQVGFIEG----------QHLQMMGGE--FCGNASR 66

Query: 83  CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142
               +L  +        E  +     +    G             K           +  
Sbjct: 67  SFAAYLAFQD-------EDFQKEKNYEITCSGYSKTLSVWVRQGEKEHQFLAKIAMPEIL 119

Query: 143 RFHIGP--VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
                   +    +    V   G  H I   +  +   ++        ++    E   L 
Sbjct: 120 SMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEIINVFQEYMEKEEY----EAFGLM 175

Query: 201 IARVTSLESL-DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259
                       ++          +C     A        ++  R  +++  GG L +  
Sbjct: 176 FFEKEKYRMTPYVQVKGISGVWEKSCAFGTTALGYYLREKYQMQR-ANIQQPGGYLEVSL 234

Query: 260 HDNNHVFMTGEAKKEWEGK 278
            +   VF+ G  K   EG+
Sbjct: 235 -EGEQVFIDGLVKIVAEGE 252


>gi|308176863|ref|YP_003916269.1| hypothetical protein AARI_10880 [Arthrobacter arilaitensis Re117]
 gi|307744326|emb|CBT75298.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
          Length = 265

 Score = 40.9 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 15/219 (6%)

Query: 37  ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS 96
            L   ++ H +Q+  I   +       + +   +      C N    +  +  +  +   
Sbjct: 28  RLLRAEHVHAEQVGFILPPRKPQAHTRLHMAGDE-----FCANATLSLAAWHAA-TRPGP 81

Query: 97  FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLR 155
              E +     A+++    +         +   IP  +S +          G V +    
Sbjct: 82  DRAELLIETSGARQSLHCRVEPSEAGYRCELS-IPWPQSIEPYKVPGIERAGLVRYPGAV 140

Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215
           +      G+   +      L     A     +    ++       +A + S+ +L    W
Sbjct: 141 HLVAEGDGSDPLLRERAQQLAVELGAREAVCVVGIMLYDRHRQ-ELAPLVSVPALGSMIW 199

Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG 254
           E       +CGS   A       +  T    SVK  GG 
Sbjct: 200 EG------SCGSGTAAVGAYLAAVTGTPINASVKQPGGT 232


>gi|55378542|ref|YP_136392.1| diaminopimelate epimerase [Haloarcula marismortui ATCC 43049]
 gi|55231267|gb|AAV46686.1| diaminopimelate epimerase [Haloarcula marismortui ATCC 43049]
          Length = 303

 Score = 40.9 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 74/249 (29%), Gaps = 20/249 (8%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAK 109
            +   +DA  D  +R  +      Q+    +           +    +T  T RG +  +
Sbjct: 50  FVLPAEDA--DRRLRCFSPTKELAQAETAAVAAHAALYERGEIDDSEWTVATARGDVAVE 107

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSM---GN 164
             ++G + V+ G   +    IP +   D +  +         +   +      S      
Sbjct: 108 TKQNGMVWVEQGRADITEVDIPYSDVADALGLNAATLKDVGADLPLVTAGVGESWLMVPV 167

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE---RGVGL 221
            +        +    + S  + +    ++    +   A  T   +   R +    R    
Sbjct: 168 NYFEHLSGLTMDVAAVDSLCDRVDAAGVYPFTFDTVGADATRRSTFHGRAFRVGSRAEEP 227

Query: 222 TAACGSAACASVVASGCLHKTNRAVS-VKMLGGGL-----LIEWHDNN-HVFMTGEAKKE 274
             A  S ACA+ V        +  +  +   GG        +    +   V++ G A   
Sbjct: 228 VTATASGACAAFV--RRYGALDDTIEQIIAEGGHFRDRPGTVSVDTDGTEVWVGGRAVTA 285

Query: 275 WEGKLDIKT 283
            +G + +  
Sbjct: 286 LDGTVTVPA 294


>gi|229161960|ref|ZP_04289937.1| Phenazine biosynthesis protein phzF [Bacillus cereus R309803]
 gi|228621567|gb|EEK78416.1| Phenazine biosynthesis protein phzF [Bacillus cereus R309803]
          Length = 298

 Score = 40.5 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 48/198 (24%), Gaps = 15/198 (7%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D  I        EV  CG+        L    K     +       V       
Sbjct: 64  SESEVADYKIEYFTP-KEEVDLCGHATIGSFAILMHLNKLFKSRYTIETNSGVLTITIKD 122

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + +I      D  D +                +VS G    +  ++ +
Sbjct: 123 DIIFMEQNEPIFYDVISPNEFIDCFDIEDIEN-------TYPIQIVSTGLKDILIPIKSE 175

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSAAC 230
                L +      K    S+  N+    + +     +              AA G++  
Sbjct: 176 ---TQLHTLQPNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLYDINEEAATGTSNS 232

Query: 231 ASVVASGCLHKTNRAVSV 248
           A        H   + V V
Sbjct: 233 ALACYLYEQHYLQKEVYV 250


>gi|171317643|ref|ZP_02906828.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria
           MEX-5]
 gi|171097171|gb|EDT42021.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria
           MEX-5]
          Length = 293

 Score = 40.5 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 59/241 (24%), Gaps = 15/241 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
            +    D   D  +RI    G E+   G+                R         G+   
Sbjct: 52  FVCTPTDPQADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110

Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +             P      D    P+  +  + D       P          VV + +
Sbjct: 111 ELREQADGWAFAAPPARFTPLDRADYPVLAAALRSDAIDPDAEPCAVDNGAPWLVVRLTS 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             A   +  D       +          ++   +   A         +     G G   A
Sbjct: 171 ADACIGLAPDPAALAALTHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228

Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
            GSA  A         +      T R  +     G + + + D+  +++ G      +G 
Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRDGRIAVRYGDDGTIWIGGHVVTVVDGT 288

Query: 279 L 279
            
Sbjct: 289 F 289


>gi|269960320|ref|ZP_06174694.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834931|gb|EEZ89016.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 299

 Score = 40.5 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 22/228 (9%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDGS-- 115
           D  +R       EV  CG+G     + L  +   K   +  F+T+ G L AK N      
Sbjct: 87  DMRLRWFTP-KVEVALCGHGTLATAQILKEQGFAKVGDTIAFQTLSGELHAKVNESTIEL 145

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
                   +   + I L                 +         + + N   +  +E + 
Sbjct: 146 DFPATQFEMDVEQDIALLAGLGLKAEQVVSYAQFDSKG-----FIEVDNEKTVLELEPNF 200

Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVV 234
               L +           S   +L          +       GV      GSA CA +  
Sbjct: 201 DA--LKNIQGRGVVVTAQSNSPDLDFISRYFAPWV-------GVNEDPVTGSAHCALTQF 251

Query: 235 ASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            S  L +   RA      GG L  E  +N  + + G AK    GKL +
Sbjct: 252 WSQKLGQNQFRAYQASARGGHLQTELLENGRIKLIGSAKTVISGKLKV 299


>gi|51491893|ref|NP_612539.2| phenazine biosynthesis-like domain-containing protein [Rattus
           norvegicus]
 gi|81884389|sp|Q68G31|PBLD_RAT RecName: Full=Phenazine biosynthesis-like domain-containing protein
 gi|51261154|gb|AAH78735.1| Phenazine biosynthesis-like protein domain containing [Rattus
           norvegicus]
 gi|149043908|gb|EDL97359.1| rCG60889, isoform CRA_a [Rattus norvegicus]
          Length = 288

 Score = 40.5 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 64/224 (28%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119
             +R      SEV  CG+        L  ++K    + TF T+ G L A+   DG +   
Sbjct: 65  FGLRWFTP-VSEVPLCGHATMASAAVLFHKIKNVNSTLTFVTLSGELKARRAEDGIVLDF 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177
              P        +         D            R   V      +   +  ++ +   
Sbjct: 124 PLYPTFPQDFHEVKDLIKAAIGDTTVQDIQYSPDTRKLLVRLSDSYDRSFLESLKVNTEP 183

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
                    +    +  +G +          S     W  GV      GSA    S   S
Sbjct: 184 LPGIEKTGKVKGLILTVKGESGGQTTPYDFYSRYFAPW-VGVPEDPVTGSAHTVLSSYWS 242

Query: 237 GCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K   RA      GG L I    +  V M G A    EG L
Sbjct: 243 QQLGKKEMRAFQCSCRGGELDISLRPDGRVDMKGGAAVVLEGML 286


>gi|150018319|ref|YP_001310573.1| hypothetical protein Cbei_3494 [Clostridium beijerinckii NCIMB
           8052]
 gi|149904784|gb|ABR35617.1| phenazine biosynthesis protein PhzF family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 303

 Score = 40.5 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 67/253 (26%), Gaps = 28/253 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I     +  D  +R      SEV  CG+             + ++       G  +   
Sbjct: 51  FILSSNSSEYDVQVRFFTP-TSEVPICGHATIAAHYVRAIENELETSRIYHKTGAGILPV 109

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDR----FHIGPVNHLFLRNPFVVSMGNPH 166
           +       +  + I+    I      D ++++       I   + L      +VS G   
Sbjct: 110 DIIK--ENNDYKIIMTQGKIEFREIIDGINKEELLKVLKIKESDLLDDYKIQIVSTG-HS 166

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVG 220
            +      +   +                  N      T  +  D+    R      G+ 
Sbjct: 167 KVMIGIKSIETLNTLQPDYNALSKLSEVIKCNGYYIFTTDSKESDILIHGRMFAPSIGIN 226

Query: 221 LTAACGSAACASVVASGCLHKTNRAVS-----------VKMLG-GGLLIEWHDNNHVF-- 266
                G+A     V     +      S           +   G   + ++  DN  V   
Sbjct: 227 EDPVTGNANGPLGVYLVHHNLVKHNNSLFRFKAKQGEAINRPGIIEVEVKIEDNEPVEAK 286

Query: 267 MTGEAKKEWEGKL 279
           ++G A   ++ +L
Sbjct: 287 VSGNAVIIFKSEL 299


>gi|317061454|ref|ZP_07925939.1| diaminopimelate epimerase [Fusobacterium sp. D12]
 gi|313687130|gb|EFS23965.1| diaminopimelate epimerase [Fusobacterium sp. D12]
          Length = 269

 Score = 40.5 bits (93), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 32/259 (12%)

Query: 23  MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82
            R  +  ++      L    N + +Q+  I            + +   G E   CGN  R
Sbjct: 37  NRENYAEVS----RYLMEYGNVYCEQVGFIEG----------QHLQMMGGE--FCGNASR 80

Query: 83  CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142
               +L  +        E  +     +    G             K           +  
Sbjct: 81  SFAAYLAFQD-------EDFQKEKNYEITCSGYSKTLSVWVRQGEKEHQFLAKIAMPEIL 133

Query: 143 RFHIGP--VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
                   +    +    V   G  H I   +  +   ++        ++    E   L 
Sbjct: 134 SMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEIINVFQEYMEKEEY----EAFGLM 189

Query: 201 IARVTSLESL-DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259
                       ++          +C     A        ++  R  +++  GG L +  
Sbjct: 190 FFEKEKYRMTPYVQVKGISGVWEKSCAFGTTALGYYLREKYQMQR-ANIQQPGGYLEVSL 248

Query: 260 HDNNHVFMTGEAKKEWEGK 278
            +   VF+ G  K   EG+
Sbjct: 249 -EGEQVFIDGLVKIVAEGE 266


>gi|256061434|ref|ZP_05451578.1| PhzF family phenazine biosynthesis protein [Brucella neotomae 5K33]
 gi|261325442|ref|ZP_05964639.1| phenazine biosynthesis protein PhzF [Brucella neotomae 5K33]
 gi|261301422|gb|EEY04919.1| phenazine biosynthesis protein PhzF [Brucella neotomae 5K33]
          Length = 308

 Score = 40.5 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 81/292 (27%), Gaps = 41/292 (14%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQI---MLIHDFQDASVDAFIRIINCDGSEVQ 75
           +V D     + +T   + A++ + N     +   + IH   + + +A +RI         
Sbjct: 29  IVHDC----EGLTDACMQAIAREFN-----LSETVFIHAPANPAHEASVRIFTPAYELPF 79

Query: 76  SC----GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131
           +     G  +    R  T     +  T E   GI+        + +    +     + + 
Sbjct: 80  AGHPTVGAAVSLARRQKTGDETDRLVTLEEKVGIVRCGVILGENSAFAEFDLPRLPEQVD 139

Query: 132 LARSFDKM-------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184
           +    ++          +      V  ++      + +   + I   +  +    ++   
Sbjct: 140 VKIEREEAAAAIGLGTHEIGFENHVPGVWSAGTPCLLVPVHNLIAAAKVSIDPVYVSESL 199

Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--- 241
             +   P+             S     +      V    A GSA  A         K   
Sbjct: 200 PHVGGRPLPIYVYCRETILFDSHFHARMFVIGANVYEDPATGSAVAAFAGMIQQNDKPVD 259

Query: 242 ------------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                         R   +++    L +         + G A K  EG+L +
Sbjct: 260 GSSQWWIEQGMEMGRPSRIRL---ELDVSKQKLVSARIGGPAVKIAEGRLFV 308


>gi|260789391|ref|XP_002589730.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae]
 gi|229274912|gb|EEN45741.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae]
          Length = 293

 Score = 40.5 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 218 GVGLTAACGSA-ACASVVASGCLHKTNRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEW 275
           GV     CGSA    +   +  L KT+  V      GG L +    +  V + G+A    
Sbjct: 228 GVAEDPVCGSAHTVLASYWAKELGKTDFYVRQCSPRGGDLKVWLRGDGRVEVAGKATVVL 287

Query: 276 EGKLDI 281
            GK+ I
Sbjct: 288 NGKIKI 293


>gi|189053892|dbj|BAG35205.1| unnamed protein product [Homo sapiens]
          Length = 255

 Score = 40.5 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +R      SEV  CG+        L  ++K  + T   +   G L A+   DG +   
Sbjct: 32  FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDL 90

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              P        +         +            +   V      +  F     +   +
Sbjct: 91  PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTEN 150

Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
           L    N        +  +G      +     S     W  GV      GSA A  S   S
Sbjct: 151 LLQVENTGKVKGLILTLKGEPCGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 209

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K           GG L I    +  V + G A    EG L
Sbjct: 210 RHLGKKEMHAFQCSRRGGELGIFLRPDGRVDIRGGAAVVLEGTL 253


>gi|291301784|ref|YP_003513062.1| phenazine biosynthesis protein PhzF family [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571004|gb|ADD43969.1| phenazine biosynthesis protein PhzF family [Stackebrandtia
           nassauensis DSM 44728]
          Length = 280

 Score = 40.5 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 23/239 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGIL 106
            +    D   D  +RI    G E++  G+              +         E   G++
Sbjct: 51  FVLSPNDPEADYRLRIFTP-GLELEFAGHPTLGSAHAWLENGGKPKRAGRIVQECAAGLV 109

Query: 107 VAKENRDG-SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGN 164
             ++   G S +      + + +   LA   D    +R  +     +     + V  +G+
Sbjct: 110 ELRQGEGGLSFAAPPRRRVGELEAEHLAAIVDAFGIEREAVVSHQWVDNGPGWAVIRLGS 169

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
              +  +E D   +  A  G +            L      S           GV     
Sbjct: 170 AEEVLALEPDFSRFPTAMVGAVGEYPKGSEFAYELRTFAPAS-----------GVFEDPV 218

Query: 225 CGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           CGS   +         +   A  V         G + I   ++  V++ G     + G 
Sbjct: 219 CGSMNASVAQWLTGAGEMPAAYKVSQGARLGRRGEVAIAVEEDGTVWVGGATTTCFRGT 277


>gi|294777153|ref|ZP_06742610.1| conserved domain protein [Bacteroides vulgatus PC510]
 gi|294449022|gb|EFG17565.1| conserved domain protein [Bacteroides vulgatus PC510]
          Length = 111

 Score = 40.5 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113
           + A  D  + I N DGSEV  CGN  RC+ +++      ++K+ T ET+ GI V K + +
Sbjct: 4   KSAKADFSMHIFNADGSEVMMCGNASRCIGKYVYDNKLTQKKAITQETLSGIKVLKLHTE 63

Query: 114 G 114
            
Sbjct: 64  N 64


>gi|296220550|ref|XP_002756354.1| PREDICTED: phenazine biosynthesis-like domain-containing
           protein-like [Callithrix jacchus]
          Length = 288

 Score = 40.1 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
             +R      SEV  CG        V F   +      +F T+ G L A+   D  I   
Sbjct: 65  FGLRWFTP-ASEVPLCGHATLASAAVLFYKIKNMNSMLSFVTLSGELKARREEDDIILDL 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177
              P        +         +            +N  V      +   +  ++ +  +
Sbjct: 124 PLYPAHPQNFHEVEDLIKTTIGNTLVQDVCYSPDTQNLLVRLSDAYDRSFLENLKVNTEN 183

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
                    +    +  +G      +     S     W  GV      GSA A  S   S
Sbjct: 184 LTQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 242

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K           GG L I    +  V + G A    EG L
Sbjct: 243 QHLGKKEMHAFQCSRRGGELGISLRPDGRVDIRGGAAIVLEGTL 286


>gi|15896687|ref|NP_350036.1| hypothetical protein CA_C3446 [Clostridium acetobutylicum ATCC 824]
 gi|18202320|sp|P58293|Y3446_CLOAB RecName: Full=Uncharacterized isomerase CA_C3446
 gi|15026537|gb|AAK81376.1|AE007842_4 Predicted epimerase, PhzC/PhzF homolog [Clostridium acetobutylicum
           ATCC 824]
 gi|325510851|gb|ADZ22487.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
          Length = 302

 Score = 40.1 bits (92), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 66/253 (26%), Gaps = 28/253 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I   +D   DA++R      SEV  CG+               ++       G  +   
Sbjct: 51  FIFSSKDERYDAWVRFFTP-TSEVPICGHATIAAHYARAIENNLETSRVYHKTGAGILPV 109

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF----HIGPVNHLFLRNPFVVSMGNPH 166
           +       D  + I+    I      D   +++     +I   + L      +VS G   
Sbjct: 110 DVIKE--NDDYKIIMTQGKIEFGSVIDGEKKEKLLRALNIEKSDLLENYKIQIVSTG-HS 166

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--------G 218
            +      L   +       +          N       + E  D+    R         
Sbjct: 167 KVMIGIKSLKTLNKLQPNYDVLSKLSKIIKCNGYYVFAVTSEDSDILIHGRMFAPAIGIN 226

Query: 219 VGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGG---------LLIEWHDNNHVF-- 266
                   +    + +    L   + ++   K   G          + +       V   
Sbjct: 227 EDPVTGNANGPLGAYLVHHKLACYDNSIFKFKAKQGEAIGRQGIIEVEVRVDKEEPVEVK 286

Query: 267 MTGEAKKEWEGKL 279
           ++G A   ++ +L
Sbjct: 287 ISGNAVVVFKSEL 299


>gi|282897634|ref|ZP_06305634.1| Phenazine biosynthesis PhzC/PhzF protein [Raphidiopsis brookii D9]
 gi|281197557|gb|EFA72453.1| Phenazine biosynthesis PhzC/PhzF protein [Raphidiopsis brookii D9]
          Length = 263

 Score = 40.1 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 34/233 (14%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV 107
            +    D      +R       EV  CG+        L S       +   F T  G+L+
Sbjct: 52  FLLPENDG---FNLRWFTPTT-EVPLCGHATLASAHVLWSEGYLSPEQKARFYTKSGLLI 107

Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167
           AK+  D    +++  P+   +++        +  +   +G  +       ++V + +P  
Sbjct: 108 AKKQDD---WIELDFPVNHSQIV----EPPPLLNEVLGVGYKSVSLNSLGYLVELASPQL 160

Query: 168 IFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
           +  ++ D     L       + +   +  + ++   A    ++   +             
Sbjct: 161 VRQIQPDFQQMRLLPVKSMIVTSTGDLEYDFISRFFAPGFGIDEDPV------------- 207

Query: 226 GSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274
            + A    +A    +K  +           GG L + +   N VF++G+A   
Sbjct: 208 -TGAAHCCLAPFWRYKLQKDTFLAYQASQRGGILRVTYSGGNRVFLSGQAITV 259


>gi|296171783|ref|ZP_06852918.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295893973|gb|EFG73739.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 41

 Score = 40.1 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 5  MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTH 45
          M+ FAK  G  N  LV+   G   ++ +  + AL        
Sbjct: 1  MI-FAKGHGTENDFLVLPDAGAALDLGAARVAALCDRRRGVG 41


>gi|229097693|ref|ZP_04228648.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-29]
 gi|229116701|ref|ZP_04246085.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-3]
 gi|228666533|gb|EEL21991.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-3]
 gi|228685638|gb|EEL39561.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-29]
          Length = 298

 Score = 39.8 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 39/194 (20%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D  I        EV  CG+        L    K     +       V       
Sbjct: 64  SESEIADYKIEYFTP-KEEVDLCGHATIGSFTILMHLNKLFKNRYTIETNSGVLTITIKE 122

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + +I      D  D           +       + +            
Sbjct: 123 DIIFMEQNEPIFYDVISPNEFIDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHTMQ 182

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 183 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 236

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 237 YLYKQHYLQKEVYV 250


>gi|77460003|ref|YP_349510.1| diaminopimelate epimerase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384006|gb|ABA75519.1| putative epimerase [Pseudomonas fluorescens Pf0-1]
          Length = 330

 Score = 39.8 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 98/317 (30%), Gaps = 62/317 (19%)

Query: 5   MVDFAKMEGIGNKILVIDMR-----------------GCHDNITSDAINALST----DDN 43
           M  F   +  GN   V+  R                       ++ AI            
Sbjct: 1   MTQF--YDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRP 58

Query: 44  THF-----DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF- 97
                   D ++ I  FQ A     + I+N DG+  +  GNG+    R L  +       
Sbjct: 59  VGSKSHRSDGLL-IGPFQSAPP-FDLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEG 116

Query: 98  ---TFETIRGILV---------AKENRDGSISVDMGEPILDWKLIPLAR----SFDKMDR 141
                   +             A+        +D+G+P      +         F+ ++ 
Sbjct: 117 ATLRVHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAVGALGVEPVPFNGVEV 176

Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL--------------YHYDLASFGNLL 187
           +R            +   V +GNPH +  V+D++                    ++    
Sbjct: 177 NRVRPLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPT 236

Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AV 246
                   GVNL  A     + +  R +ERG G TA+ G++A A   A+  +   +   V
Sbjct: 237 GAGQPCPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEV 296

Query: 247 SVKMLGGGLLIEWHDNN 263
            V M GG   I   + +
Sbjct: 297 QVLMPGGTAPILLEERD 313


>gi|260914715|ref|ZP_05921180.1| phenazine biosynthesis PhzC/PhzF protein [Pasteurella dagmatis ATCC
           43325]
 gi|260631219|gb|EEX49405.1| phenazine biosynthesis PhzC/PhzF protein [Pasteurella dagmatis ATCC
           43325]
          Length = 284

 Score = 39.8 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 67/268 (25%), Gaps = 26/268 (9%)

Query: 26  CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85
             D +    +  ++   N    +++ +H  +  S    +RI   D     +    +    
Sbjct: 29  QADGLNDLQMQLIARQFNL--SEVVFVHQAEQLSAVKKLRIFTPDYELPFAGHPTIGASF 86

Query: 86  RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145
                      +  +T  G++     +   I     +       I   +    +      
Sbjct: 87  VLHRQLGLPDQYVLQTNAGLIEIYHQQKQIIFGLNTDI-----QIQTIKDDPLLYAKLLG 141

Query: 146 IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205
           + P +   +     V+ G+   +      L          +           +       
Sbjct: 142 LQPADIAQIAW---VNTGSQQLLIQ----LNSASAIKTCQIDTALFHQLVQQSALYVWFE 194

Query: 206 SLESLDLRTW---ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-------L 255
                 +R +      V      GSAA            T     +    G        L
Sbjct: 195 EHNQAKVRLFFGSNGAVVEDPGTGSAAANLGGLCIKNGLTPLNWKITQ--GDEIQRPNRL 252

Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
            +   ++  +++ GE      G+  + +
Sbjct: 253 TLSVDESETIYVGGEVIAVGNGEFFVPS 280


>gi|23308971|ref|NP_601940.2| epimerase [Corynebacterium glutamicum ATCC 13032]
 gi|62391581|ref|YP_226983.1| epimerase, PhzC/PhzF-like protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21325517|dbj|BAC00139.1| Predicted epimerase, PhzC/PhzF homolog [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326923|emb|CAF20767.1| Predicted epimerase, PhzC/PhzF homolog [Corynebacterium glutamicum
           ATCC 13032]
          Length = 280

 Score = 39.8 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 78/277 (28%), Gaps = 39/277 (14%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           ++ D     D+++++ +  ++   N      +     +        D  +RI    G   
Sbjct: 27  VIADA----DDLSAEQMARIARWTN------LSETTFLLKPTQEGADYRVRIFTPTGELP 76

Query: 75  QSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134
            +    +     F     ++ +   +     LVA    DG  S    +     K  PL  
Sbjct: 77  FAGHPTLGTAHVFRELHGEQGTQLVQECVAGLVAVRAIDGPASGLAFQAPPTLKDGPLDA 136

Query: 135 SFDKMDRD------RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188
           S      +       F              VV + +   +  +E D   +     G + A
Sbjct: 137 SDLDAACEALGISPDFIRAHQWVDNGPGWAVVELPSAQHVLDLEPDFSAHPTLKLGVIGA 196

Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN----- 243
                                  +R + +G+G     GS   +         +       
Sbjct: 197 YPEGAPHAFE-------------VRAFAQGIGEDPVTGSLNASIAQWLHRDGRAGEGYLA 243

Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
              +     G + I   +++ +++ G     ++G  +
Sbjct: 244 SQGTAIGRAGEIHISI-ESHAIWVGGSVTTIFQGTAE 279


>gi|298248633|ref|ZP_06972438.1| phenazine biosynthesis protein PhzF family [Ktedonobacter racemifer
           DSM 44963]
 gi|297551292|gb|EFH85158.1| phenazine biosynthesis protein PhzF family [Ktedonobacter racemifer
           DSM 44963]
          Length = 305

 Score = 39.8 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 70/283 (24%), Gaps = 33/283 (11%)

Query: 26  CHDNITSDAINALSTDDNTHFDQ--IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRC 83
              +++ + +  ++ + N    Q     +        D  +R     G EV   G+    
Sbjct: 29  NAQDLSQETMQRIAREFN----QSETTFLLPPTRQETDWRLRSFTPVGIEVGGAGHNALG 84

Query: 84  VVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL---ARSF 136
              +L    + K       F+   G  V                      I +   A SF
Sbjct: 85  AWWWLAEAGQLKLSGPRTVFQQEIGEQVLAVEVL--AEKREEGAPWQPTTISMRQTAPSF 142

Query: 137 DKMDRDRFHIGPVNHLFLRNPFV------VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
             +  D   +     L   + FV      V       +            A         
Sbjct: 143 GAIHTDPAALAAALGLESSDLFVEGLPAQVVSTGATHMMVPVQSREAISRAQPDAKRLYQ 202

Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLT------AACGSAACASVVASGCLHKTNR 244
            + S G                  + R    T       A G+AA           +   
Sbjct: 203 HLRSVGGQGCYLFSLDTVDPLAAAYTRFFNPTEGIVEDPATGTAAGPLACYLAKYGRIGS 262

Query: 245 AVSVKMLGG-GL----LIEWH-DNNHVFMTGEAKKEWEGKLDI 281
            V++ +  G  L     IE     + V + G      EG L +
Sbjct: 263 WVTITIEQGYDLARPSRIEIRLHGDEVSICGSGVTVAEGVLRL 305


>gi|62177133|ref|NP_071412.2| phenazine biosynthesis-like domain-containing protein isoform a
           [Homo sapiens]
 gi|17380331|sp|P30039|PBLD_HUMAN RecName: Full=Phenazine biosynthesis-like domain-containing
           protein; AltName: Full=MAWD-binding protein; AltName:
           Full=Unknown protein 32 from 2D-page of liver tissue
 gi|16307296|gb|AAH09738.1| Phenazine biosynthesis-like protein domain containing [Homo
           sapiens]
 gi|119574659|gb|EAW54274.1| MAWD binding protein, isoform CRA_b [Homo sapiens]
 gi|119574660|gb|EAW54275.1| MAWD binding protein, isoform CRA_b [Homo sapiens]
 gi|119574661|gb|EAW54276.1| MAWD binding protein, isoform CRA_b [Homo sapiens]
 gi|261860514|dbj|BAI46779.1| phenazine biosynthesis-like protein domain containing protein
           [synthetic construct]
          Length = 288

 Score = 39.8 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +R      SEV  CG+        L  ++K  + T   +   G L A+   DG +   
Sbjct: 65  FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDL 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              P        +         +            +   V      +  F     +   +
Sbjct: 124 PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTEN 183

Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
           L    N        +  +G      +     S     W  GV      GSA A  S   S
Sbjct: 184 LLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 242

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K           GG L I    +  V + G A    EG L
Sbjct: 243 QHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTL 286


>gi|10800086|dbj|BAB16606.1| MAWD binding protein [Homo sapiens]
 gi|119574663|gb|EAW54278.1| MAWD binding protein, isoform CRA_d [Homo sapiens]
          Length = 255

 Score = 39.8 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +R      SEV  CG+        L  ++K  + T   +   G L A+   DG +   
Sbjct: 32  FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDL 90

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              P        +         +            +   V      +  F     +   +
Sbjct: 91  PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTEN 150

Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236
           L    N        +  +G      +     S     W  GV      GSA A  S   S
Sbjct: 151 LLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 209

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K           GG L I    +  V + G A    EG L
Sbjct: 210 QHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTL 253


>gi|284048874|ref|YP_003399213.1| hypothetical protein Acfer_1540 [Acidaminococcus fermentans DSM
           20731]
 gi|283953095|gb|ADB47898.1| conserved hypothetical protein [Acidaminococcus fermentans DSM
           20731]
          Length = 271

 Score = 39.8 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 32/243 (13%)

Query: 48  QIMLIHDFQDASVDAFIRIINCDGSE--VQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRG 104
           Q++ +H   + +    I+           + CGN  R            K   F+ T  G
Sbjct: 33  QLLTLHPSVEQAGCLSIKEGQPQVEMMGGEFCGNATRSAGACALYFNGEKEGEFQVTCSG 92

Query: 105 ILVAKENRDGSISVDMG------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158
             V    R   +  ++        P L  K I L+   + ++                  
Sbjct: 93  CPVPLPVRAKKVRENLYEASVQLPPPLSMKKIRLSYERESVECQE--------------- 137

Query: 159 VVSMGNPHAIFF--VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-LRTW 215
           VV  G  H ++F    D++    L              E   L +  +++L+ +  +   
Sbjct: 138 VVFPGITHYVYFTLNVDEVDQDQLFYSLQREISRGEEPEAYGLMLVEMSTLKVIPIVYVS 197

Query: 216 ERGVGL-TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIE--WHDNNHVFMT--GE 270
             G      +CGS + A   A     K + A +++  GG + IE  W     V +T  G 
Sbjct: 198 ATGTLYHENSCGSGSAAVAAALTQRQKRSLAATLQEPGGRIDIETDWQAEKLVSITIGGP 257

Query: 271 AKK 273
            + 
Sbjct: 258 VRL 260


>gi|284164613|ref|YP_003402892.1| phenazine biosynthesis protein PhzF family [Haloterrigena
           turkmenica DSM 5511]
 gi|284014268|gb|ADB60219.1| phenazine biosynthesis protein PhzF family [Haloterrigena
           turkmenica DSM 5511]
          Length = 299

 Score = 39.4 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 62/249 (24%), Gaps = 20/249 (8%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK 109
            +   + A  D  IR       EV  CG+        L     +  ++  ET  G L  +
Sbjct: 50  FLRPSETA--DYRIRYFTP-TQEVDLCGHATIGSFAHLRDEGLEAGTYALETNVGELEIE 106

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            + DG++ +   EP +    +   R  D +  D   +   +           +    A  
Sbjct: 107 VDSDGTVWMTQDEPRIREVDVGYDRVADALGVDAAALEGASDDIPLAVSSTGLPFLIAPI 166

Query: 170 FVEDDL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
               DL        A                        S     +     GV      G
Sbjct: 167 TYLSDLGSAEPDMRAIEELTDEVDATGVYCFTFDALGRESTLHGRMFAPGAGVPEDPVTG 226

Query: 227 SAACASVVASGCLHKTNRAV----------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276
           +A+ A           +              V   G    +       V + G      +
Sbjct: 227 TASGAVGAYLDRFGAFDDDFPEELRLEQGHYVDRPG---QVRVRIGEDVRVGGRGVTVLD 283

Query: 277 GKLDIKTGK 285
           G L +   +
Sbjct: 284 GSLAVPEDE 292


>gi|4263517|gb|AAD15343.1| similar to PHZF, catalyzing the hydroxylation of
           phenazine-1-carboxylic acid to
           2-hydroxy-phenazine-1-carboxylic acid [Arabidopsis
           thaliana]
 gi|7269771|emb|CAB77771.1| putative protein [Arabidopsis thaliana]
 gi|51972158|gb|AAU15183.1| At4g02860 [Arabidopsis thaliana]
          Length = 294

 Score = 39.4 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 17/242 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +           +R       EV  CG+        L S     S   E +    +   
Sbjct: 55  FLIPITGFQARFSLRWFTPLA-EVDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILT- 112

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                +S        + K        +        +   +         ++      I  
Sbjct: 113 --AKRVSDTSELSDGEVKGGTFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKA 170

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVG 220
              +     L S  ++    P   + +       I             + R      GV 
Sbjct: 171 TATNNILVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVD 230

Query: 221 LTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               CGSA CA     S  ++K +          G + I    +   V + G+A    EG
Sbjct: 231 EDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEG 290

Query: 278 KL 279
            +
Sbjct: 291 HV 292


>gi|311746863|ref|ZP_07720648.1| phenazine biosynthesis protein PhzF family protein [Algoriphagus
           sp. PR1]
 gi|126578549|gb|EAZ82713.1| phenazine biosynthesis protein PhzF family protein [Algoriphagus
           sp. PR1]
          Length = 264

 Score = 39.4 bits (90), Expect = 0.60,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAK 109
            +   +D      +R       E+  CG+        +          T          +
Sbjct: 49  FVEKTKDTGY-FGLRWFTP-TLEIDLCGHATLASSFHMLQSGWATPGDTIHFQTKSGELR 106

Query: 110 ENRDGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
              DG              LIP           D F    +    LR  +++ + +  A+
Sbjct: 107 VKSDGEWLEMDFP------LIPTFEEEHPYFKDDFFGEKVIQISQLRKNWIIELEDFEAV 160

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228
             V  DL      S   ++            S     ++          GV      G A
Sbjct: 161 TRVIPDLPTIAANSEEGIIITAKGKEPFDIYSRFFGPNV----------GVDEDPVTGFA 210

Query: 229 ACASVVASG-CLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
            CA +        K           GG L +E HD+  V + G+A    EG +D
Sbjct: 211 HCALMDYWYQKTGKFKIKAFQASKRGGVLHLEKHDD-RVILRGQAVHVLEGTID 263


>gi|37526184|ref|NP_929528.1| hypothetical protein plu2271 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785614|emb|CAE14564.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 292

 Score = 39.4 bits (90), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 63/247 (25%), Gaps = 20/247 (8%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGIL 106
            I   ++   D  +RI    GSE+   G+        L      + +      E   G++
Sbjct: 50  FILPAENPLADYRVRIFTP-GSELPFAGHPTIGTAHALLEAGLIQAREGRIVQECGAGLI 108

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI------GPVNHLFLRNPFVV 160
                        +   + +  + PL+                    P          V 
Sbjct: 109 TLNVTERDEGQKLITFELPEPTITPLSSEQIDRLESILDCPLDRALTPALIDVGARWIVA 168

Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
                 A+   + D  +  L      +    +   G     A           +      
Sbjct: 169 HTTGAEAVLATKPD--YARLLEHDTQMNITGVCLYGAYHEGAEADIEVRSFAPSCGVNED 226

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKE 274
                G+ + A+ +    +   +  +     G      G + +  H +  +F+ G A   
Sbjct: 227 PVCGSGNGSVAAFMRHHKVAMIDDKIVHSSQGKKLGRQGSVWLS-HSDGKIFVGGSAVTC 285

Query: 275 WEGKLDI 281
             G + I
Sbjct: 286 INGTITI 292


>gi|257469861|ref|ZP_05633953.1| hypothetical protein FulcA4_11006 [Fusobacterium ulcerans ATCC
           49185]
 gi|317064090|ref|ZP_07928575.1| phenazine biosynthesis protein PhzF family [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689766|gb|EFS26601.1| phenazine biosynthesis protein PhzF family [Fusobacterium ulcerans
           ATCC 49185]
          Length = 302

 Score = 39.4 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 68/258 (26%), Gaps = 33/258 (12%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILV 107
            I        D  +R       EV  CG+        +      K       +T  GIL 
Sbjct: 51  FIFSSDSKEYDVHVRFFTPLR-EVPICGHATIAAHYVIALENNFKEKTCIRQKTGAGILP 109

Query: 108 AKENRDGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
            +     +  +V M +  +++  I   ++ D++          + L    P  +      
Sbjct: 110 VEIEPIDNSYNVIMTQGKVEFGDIINGKNLDRLVSALGI--DNDDLITAAPVQIVSTGHS 167

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVG 220
            +     D                       N         +  D+    R      G+ 
Sbjct: 168 KVMIGIKDYKQLHNLRPDMKELNKLSDIINCNGYFVFTFDSKEKDILLKGRMFAPAIGIE 227

Query: 221 LTAACGSAACASVVASGCLHKT-----------------NRAVSVKMLGGGLLIEWHDNN 263
                G+A           +                   +R  ++ +    + IE  +  
Sbjct: 228 EDPVTGNANGPVGAYIVKYNLVKIENDNLKFSAKQGMSIDREGTINV---NVHIENSEPV 284

Query: 264 HVFMTGEAKKEWEGKLDI 281
            V ++G A   ++ ++++
Sbjct: 285 KVQVSGTATVVFKTEIEL 302


>gi|239618454|ref|YP_002941776.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF
           19.5.1]
 gi|239507285|gb|ACR80772.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF
           19.5.1]
          Length = 278

 Score = 39.4 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 64/221 (28%), Gaps = 14/221 (6%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDM 120
             +R       EV  CG+        L S    +    F+T+ GI  A+   D   SV +
Sbjct: 64  FELRWFTP-QVEVPLCGHATLATAWILFSEYGCRGKIRFKTLSGIHEAELVSD---SVRL 119

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
             P      +P+ +   ++     ++            +V       I  ++ D      
Sbjct: 120 NFPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAK-LLVEFEQASIIRELKPDFKRLLS 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-VASGCL 239
                 +      + G +                   G+      GSA           L
Sbjct: 179 LKTNYEIRGLIATARGNDGYDIVSRYFAPWV------GIDEDPVTGSAHTVLGPFWMERL 232

Query: 240 HKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
            K           GG LL+E    + V++TG A    +G L
Sbjct: 233 GKKKMQAYQASERGGELLLEITGGDRVYITGNAVTILKGTL 273


>gi|324327647|gb|ADY22907.1| phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 286

 Score = 39.4 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 52  SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 110

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + +I      D  D           +       + +            
Sbjct: 111 DIIFMEQNKPIFYDVISPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKSETRLHTLQ 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 171 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 224

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 225 YLYEQHNLQKEVYV 238


>gi|290561347|gb|ADD38074.1| Phenazine biosynthesis-like domain-containing protein
           [Lepeophtheirus salmonis]
          Length = 242

 Score = 39.4 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           GNP A+  ++ D+         + +      +  +  ++    S     +R W       
Sbjct: 19  GNPAAVVLLKSDIEDSFKQKIASEIKLSE-TAFVLCKNVNDFVSENEFYIR-WFTPSNEV 76

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFM 267
             CG A  AS        K    +S + +GG  L +E  ++ ++ M
Sbjct: 77  PLCGHATLASAAVLFYRKKNKNKLSFETMGGDELHVELENDGYISM 122


>gi|119622833|gb|EAX02428.1| hCG1778314, isoform CRA_a [Homo sapiens]
          Length = 1323

 Score = 39.4 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 40/199 (20%), Gaps = 23/199 (11%)

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            C               +  S   +T      A+   D  +      P      I  +  
Sbjct: 320 RCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGC 379

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                    H G             S        +   DL                    
Sbjct: 380 LPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 423

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248
             ++      S     L           +  C  ++   +        T+       V++
Sbjct: 424 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTL 483

Query: 249 KMLGGGLLIEWHDNNHVFM 267
            + GG   I    +  VF+
Sbjct: 484 SLDGGDTAIRVQADGGVFL 502


>gi|29833535|ref|NP_828169.1| phenazine biosynthesis protein [Streptomyces avermitilis MA-4680]
 gi|29610658|dbj|BAC74704.1| putative phenazine biosynthesis protein [Streptomyces avermitilis
           MA-4680]
          Length = 272

 Score = 39.4 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDG 114
           +    D  +R       EV  CG+          TS        F T  G+L+A    DG
Sbjct: 55  EGGEADWALRWFTPAT-EVAMCGHATLATAHVLHTSGTHEGPVRFATRSGVLIATPREDG 113

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
           SI++D     L    IP   + + +  +       +        ++ + +   +  +  D
Sbjct: 114 SITLDFPTAPLTPVEIPEGVA-EALGAEPLT--ACDTGPNVGDLLIELADEKTVRGLAPD 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV- 233
           L      S   ++A                             G+      GSA  A   
Sbjct: 171 LRALARYSERGIIATARAEDPAQGHDFVS-------RCFFPNVGIDEDPVTGSAHTALAP 223

Query: 234 VASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             S  L + +   +      G +  E  D+  + +TG A    +G+L
Sbjct: 224 FWSQRLGRPDLTGLQASPRSGHVRTELRDDRTL-LTGRAVTVIDGEL 269


>gi|255019199|ref|ZP_05291325.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515]
          Length = 53

 Score = 39.4 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 214 TWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIE 258
           T+ERGVG T ACG+A  A  +    L K      ++V   GG + + 
Sbjct: 1   TFERGVGFTNACGTAMSACSLIKKILDKDTFETPLNVYNDGGRVQVT 47


>gi|299537179|ref|ZP_07050482.1| hypothetical protein BFZC1_14223 [Lysinibacillus fusiformis ZC1]
 gi|298727420|gb|EFI67992.1| hypothetical protein BFZC1_14223 [Lysinibacillus fusiformis ZC1]
          Length = 264

 Score = 39.4 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 25/232 (10%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR 112
           +   VD  ++    +  E+  CG+G       L  +    K  + TF T  G L AK   
Sbjct: 52  EKKQVDFSLKWFTPNK-EIPICGHGTLASAFVLWQQGIVPKEHTITFHTASGPLHAKWQH 110

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           +         PI +    P A   D +      +G          ++V +GN   I   E
Sbjct: 111 ERVEIAIKTYPIAEM-ECPSALE-DWLGCKPIFVG-----RTELDYIVEVGNEDQITQFE 163

Query: 173 DD---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229
            +   +  + +              + V+   +    ++   +     G      C    
Sbjct: 164 PNFFAMKQFPVRGICLTSQSKEEGIDIVSRFFSPAQGIDEDHVNGSSHGALGPYWC---- 219

Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
                        ++   +   GG L +    +N V + G A    +G+L+I
Sbjct: 220 ----EKLSKQQLVSK--QLSKRGGVLYVT-PHHNKVLIAGAAVTVLQGELNI 264


>gi|283781289|ref|YP_003372044.1| phenazine biosynthesis protein PhzF family [Pirellula staleyi DSM
           6068]
 gi|283439742|gb|ADB18184.1| phenazine biosynthesis protein PhzF family [Pirellula staleyi DSM
           6068]
          Length = 276

 Score = 39.4 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 67/229 (29%), Gaps = 23/229 (10%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDGS 115
                +R       EV  CG+       +L      +     TF T  G L+A   R   
Sbjct: 54  GDHFELRWFTP-AIEVDLCGHATLAAAHYLWEIAAAETGLPITFSTRSGRLIA-APRGER 111

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175
           I +D        + +P         R+   + PV     R  ++V +     +     + 
Sbjct: 112 IELDFPLIEQAPQQLPEEL------REALGVAPVYTGKGRFDWLVEVATEREVLEACPNF 165

Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                A     +       S+G N       S           G+      GSA C   +
Sbjct: 166 DRLGKAEGRGFILTAKASNSQGTNSPKYDFLSRFFAPAA----GINEDPVTGSAHCC--L 219

Query: 235 ASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
           A     K  +           GG + +E   +  V + G A   + G+L
Sbjct: 220 AGYWASKLGKPSMLGYQASQRGGEVAVEVRGD-RVLLGGAAITIFTGQL 267


>gi|84498557|ref|ZP_00997320.1| Phenazine biosynthesis PhzC/PhzF protein [Janibacter sp. HTCC2649]
 gi|84381090|gb|EAP96975.1| Phenazine biosynthesis PhzC/PhzF protein [Janibacter sp. HTCC2649]
          Length = 279

 Score = 39.0 bits (89), Expect = 0.74,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 64/240 (26%), Gaps = 17/240 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +    D   D  +RI    G    +    +     +L +    +        G  +   
Sbjct: 48  FLSAPTDPGADYRVRIWTIGGELPFAGHPTIGSAHAWLEAGGVPRGEAVIQECGAGLVTV 107

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKM----DRDRFHIGPVNHLFLRNPFVVSMGNPH 166
            R          P+     +        +      +   +             V +G+  
Sbjct: 108 RRSPR-LGFAAPPMTRSGEVDAELRARIVRALAIDESAVVDMAWADNGPGWVGVDLGSAQ 166

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
           A+  V  D+  +       +   +   +  +         +E        R  G     G
Sbjct: 167 AVLDVVPDIAAFADLKVTVIGRHNEARATELGA------DVEVRAFYADGRDFGEDPVTG 220

Query: 227 SAACASVVASGCLH-----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           SA  A                 R  SV    G + IE   +  V+++G+A    EG +D+
Sbjct: 221 SANAALAQWLIGTGALPDSYVARQGSVIGREGRVHIE-AADGEVWVSGDAVTRVEGSVDL 279


>gi|79461947|ref|NP_192195.2| catalytic [Arabidopsis thaliana]
 gi|332656839|gb|AEE82239.1| Phenazine biosynthesis PhzC/PhzF protein [Arabidopsis thaliana]
          Length = 313

 Score = 39.0 bits (89), Expect = 0.76,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 17/242 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +           +R       EV  CG+        L S     S   E +    +   
Sbjct: 74  FLIPITGFQARFSLRWFTPLA-EVDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILT- 131

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                +S        + K        +        +   +         ++      I  
Sbjct: 132 --AKRVSDTSELSDGEVKGGTFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKA 189

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVG 220
              +     L S  ++    P   + +       I             + R      GV 
Sbjct: 190 TATNNILVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVD 249

Query: 221 LTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               CGSA CA     S  ++K +          G + I    +   V + G+A    EG
Sbjct: 250 EDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEG 309

Query: 278 KL 279
            +
Sbjct: 310 HV 311


>gi|220905239|ref|YP_002480551.1| hypothetical protein Ddes_1977 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869538|gb|ACL49873.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 283

 Score = 39.0 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIE-WHDNNHVF--MTGEAKKEWE 276
           L +ACGS A A  ++    +   +  S+   GG  L +  + ++      + G      +
Sbjct: 215 LESACGSGALALALSRAKSNG-GKHFSIMQPGGSPLEVRLFSEDGTAMAGINGPVALVAD 273

Query: 277 GKLDIKTG 284
           G++ +  G
Sbjct: 274 GQVWLPGG 281


>gi|4038587|emb|CAA06167.1| mucin [Homo sapiens]
          Length = 1283

 Score = 39.0 bits (89), Expect = 0.77,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 40/199 (20%), Gaps = 23/199 (11%)

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            C               +  S   +T      A+   D  +      P      I  +  
Sbjct: 281 RCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGC 340

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                    H G             S        +   DL                    
Sbjct: 341 LPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 384

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248
             ++      S     L           +  C  ++   +        T+       V++
Sbjct: 385 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTL 444

Query: 249 KMLGGGLLIEWHDNNHVFM 267
            + GG   I    +  VF+
Sbjct: 445 SLDGGDTAIRVQADGGVFL 463


>gi|169840488|ref|ZP_02873676.1| hypothetical protein cdivTM_25664 [candidate division TM7
          single-cell isolate TM7a]
          Length = 28

 Score = 39.0 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 8/14 (57%)

Query: 5  MVDFAKMEGIGNKI 18
          M+ F K +G GN  
Sbjct: 1  MLKFEKYQGAGNDF 14


>gi|150864237|ref|XP_001382977.2| hypothetical protein PICST_55048 [Scheffersomyces stipitis CBS
           6054]
 gi|149385493|gb|ABN64948.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 296

 Score = 39.0 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 69/252 (27%), Gaps = 30/252 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGIL 106
            I    + + D  +RI     +E+   G+        L    + K        E   G++
Sbjct: 50  FILKPTEPTADYKVRIFTP-VNELPFAGHPTLGTCFSLLESGRIKPKNGLIIQECKAGLV 108

Query: 107 VAKENRDG-----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161
             +          ++ +    P   +   P+             +          P +V 
Sbjct: 109 SIRVENYDENDLSNVFLSFTLPYYKFS--PITEEAIAQTEVGLGLPAGAIAASTPPVLVD 166

Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW--ERGV 219
            G   AIF ++D     D+      +      +    L +       + ++R      G 
Sbjct: 167 DGPKWAIFQLKDAQAVLDVQIDFTKIGVVSEANGWSGLGLFGKHEDGTYEMRNLIPAEGS 226

Query: 220 GLTAACGSAACAS-VVASGCLH------------KTNRAVSVKMLGGGLLIEWHDNNHVF 266
               ACGS A A        L             K NR   +K+    L+        V 
Sbjct: 227 TEDPACGSGAGAVGAYVGAFLKEEVKSLNIKQGIKVNRDAKLKV---TLVTNAEGKLDVI 283

Query: 267 MTGEAKKEWEGK 278
           + G     + G 
Sbjct: 284 VGGNVVSVFNGT 295


>gi|229075198|ref|ZP_04208192.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-18]
 gi|228707975|gb|EEL60154.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-18]
          Length = 285

 Score = 39.0 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 39/194 (20%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D  I        EV  CG+        L    K     +       V       
Sbjct: 51  SESEIADYKIEYFTP-KEEVDLCGHATIGSFTILMHLNKLFKNRYTIETNSGVLTITIKE 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + +I      D  D           +       + +            
Sbjct: 110 DIIFMEQNEPIFYDVISPNEFIDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHTMQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKKISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 224 YLYEQHYLQKEVYV 237


>gi|257126696|ref|YP_003164810.1| phenazine biosynthesis protein PhzF family [Leptotrichia buccalis
           C-1013-b]
 gi|257050635|gb|ACV39819.1| phenazine biosynthesis protein PhzF family [Leptotrichia buccalis
           C-1013-b]
          Length = 280

 Score = 39.0 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 20/225 (8%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            ++   +R     G E+  CG+        + +  ++   T            NR     
Sbjct: 58  NAIHYKLRWFTPGG-EIDLCGHATLACAFVIMNYYEKNLKTVIFDTLSGKLTVNRKNGDL 116

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
            ++  P  D K + +         +     P      R+   V        F +  +L  
Sbjct: 117 YELDFPAYDLKKVEITDEM----IELIGKKPTEAYLGRDLMCVFDDEE---FILSANLDS 169

Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA------CGSAACA 231
             +     LL    + ++  N S+       +  +    R             CGS  C 
Sbjct: 170 EKIKKLDGLLLH--ITAQHSNYSLNSKIKNTTDKIDCISRSFAPKLNVYEDPVCGSGHCH 227

Query: 232 SVVASGCLHKTNRAVSVKM---LGGGLLIEWHDNNHVFMTGEAKK 273
                         ++        G L     +N  + M+G+A  
Sbjct: 228 IAPYWIK-KLQKENLTAYQASKRSGMLYCSLANNGRMKMSGKAAL 271


>gi|229103753|ref|ZP_04234433.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-28]
 gi|228679629|gb|EEL33826.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-28]
          Length = 298

 Score = 38.6 bits (88), Expect = 0.99,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 39/194 (20%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D  I        EV  CG+        L    K     +       V       
Sbjct: 64  SESEIADYKIEYFTP-KEEVDLCGHATIGSFTILMHLNKLFKNRYTIETNSGVLTITIKE 122

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + +I      D  D           +       + +            
Sbjct: 123 DIIFMEQNEPIFYDVISPNEFIDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHTMQ 182

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 183 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 236

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 237 YLYEQHYLQKEVYV 250


>gi|153832175|ref|ZP_01984842.1| phenazine biosynthesis PhzC/PhzF protein [Vibrio harveyi HY01]
 gi|148871486|gb|EDL70341.1| phenazine biosynthesis PhzC/PhzF protein [Vibrio harveyi HY01]
          Length = 266

 Score = 38.6 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 66/227 (29%), Gaps = 20/227 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +R       EV  CG+G     + L  +   K        G  +A +   G +   +
Sbjct: 54  DMRLRWFTP-KVEVALCGHGTLATAQILKEQGLAKV-------GDTIAFQTLSGELHAKV 105

Query: 121 GEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
            E  ++          D + D +      +    + +           +           
Sbjct: 106 NESTIELDFPSTQLEMDVEQDAELLAALGLKAEQVLSYVQFDSKGFIEVD------NEQT 159

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSAACA-SVVA 235
           +                  +  A+  S +   +  +     GV      GSA CA +   
Sbjct: 160 VLELAPNFDALKNIQGRGVVVTAQSNSPDLDFISRYFAPWVGVNEDPVTGSAHCALTQFW 219

Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           S  L +   RA      GG L  E  +N  + + G A     GKL +
Sbjct: 220 SQKLGQNQFRAYQASARGGHLQTELLENGRIKLIGSATTVISGKLKV 266


>gi|229044010|ref|ZP_04191699.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH676]
 gi|228725291|gb|EEL76559.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH676]
          Length = 287

 Score = 38.6 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I          + ++      D  D           +       + +     I      
Sbjct: 112 DIIFMEQNKPRFYDVVSPNEFIDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 226 YLYEQHYLQKEVYV 239


>gi|126699370|ref|YP_001088267.1| hypothetical protein CD1761 [Clostridium difficile 630]
 gi|115250807|emb|CAJ68631.1| putative phenazine biosynthesis PhzC/PhzF protein [Clostridium
           difficile]
          Length = 260

 Score = 38.6 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 20/228 (8%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               +  +R      +E+  CG+        +++ +       +        +  R+G++
Sbjct: 50  KGKGNYELRWFTP-KAEIDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNGNL 108

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
              +       +++P+         +     P +    R+  ++       I +      
Sbjct: 109 YEMIF-----PEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKP---N 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           +  L    + L           +  A+ ++ + +               GS+ C  +   
Sbjct: 161 YAQLRKLTDWL---------GIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYW 211

Query: 237 GCLHKTNRAVSVKM--LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                 ++ V+ ++   GG +  E   +N V ++GEA    +G + I 
Sbjct: 212 SEKLGKHKMVAAQLSNRGGIIQCEVLKDNTVKISGEAVLFMQGTIKID 259


>gi|183983517|ref|YP_001851808.1| hypothetical protein MMAR_3536 [Mycobacterium marinum M]
 gi|183176843|gb|ACC41953.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 280

 Score = 38.6 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 57/239 (23%), Gaps = 23/239 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVA 108
            +   +D +    +RI    G E+   G                   +       G  + 
Sbjct: 51  FVLPPEDPNAHYKLRIFTPGG-ELAFAGHPTLGSAHAWLEHRESPGCADRIVQECGAGLV 109

Query: 109 KENRDGSISVDMGEPIL---DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGN 164
           +  R   +      P+    D     L +        R  +     +     + V  +  
Sbjct: 110 QLRRHHGMLSFAAPPMRRTGDLDEAYLTQIVAAFGIARDQVLAHQWVDNGPGWAVVQLAT 169

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
              +  +E D      A  G + A          L                  GV     
Sbjct: 170 AQEVLDLEPDFSQMSSAMVGAIGAYPSGSEHAFELRTFAP-----------GVGVAEDPV 218

Query: 225 CGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278
           CGS                 + +V         G + I    +  V+++G     ++G 
Sbjct: 219 CGSMNAGVAQWLTSTGTAPLSYTVSQGARLARAGEISITTDADGVVWVSGATSTCFKGT 277


>gi|134296539|ref|YP_001120274.1| PhzF family phenazine biosynthesis protein [Burkholderia
           vietnamiensis G4]
 gi|134139696|gb|ABO55439.1| phenazine biosynthesis protein PhzF family [Burkholderia
           vietnamiensis G4]
          Length = 293

 Score = 38.6 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 60/243 (24%), Gaps = 11/243 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108
            +    D   D  +RI    G E+   G+                R         G+   
Sbjct: 52  FVCTPSDPQADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGRLIQQCGVGRV 110

Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164
           +             P      D    P   +  + D       P          VV + +
Sbjct: 111 ELREQPDGWAFAAPPARFTPLDRSDYPALAAALRSDAIDPDAEPCAVDNGAPWLVVRLTS 170

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             A   +  D       +          ++   +   A       +    +  G      
Sbjct: 171 ADACVGLAPDPAALAALTHRYGTHGLTAYAPHPDGGPATFEIRCLMSGGGFATGEDPVTG 230

Query: 225 CGSAACASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
             +AA A +++          T R  +     G + + + D+  +++ G      +G   
Sbjct: 231 SANAALAGLLSRQQRRPGASYTARQGTAIGRDGRIAVRYDDDGTIWIGGNVVTIVDGTFS 290

Query: 281 IKT 283
           +  
Sbjct: 291 LPA 293


>gi|30020353|ref|NP_831984.1| phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579]
 gi|229127663|ref|ZP_04256652.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-Cer4]
 gi|229144859|ref|ZP_04273256.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-ST24]
 gi|296502829|ref|YP_003664529.1| phenazine biosynthesis protein PhzF [Bacillus thuringiensis BMB171]
 gi|29895904|gb|AAP09185.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579]
 gi|228638581|gb|EEK95014.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-ST24]
 gi|228655740|gb|EEL11589.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-Cer4]
 gi|296323881|gb|ADH06809.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis BMB171]
          Length = 287

 Score = 38.6 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMYLNKLFRNRYTIETNSGVLTITIKD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I          + ++      D  D           +       + +     I      
Sbjct: 112 DIIFMEQNKPRFYDVVSPNEFIDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 226 YLYEQHYLQKEVYV 239


>gi|299769355|ref|YP_003731381.1| epimerase, PhzC/PhzF [Acinetobacter sp. DR1]
 gi|298699443|gb|ADI90008.1| epimerase, PhzC/PhzF [Acinetobacter sp. DR1]
          Length = 289

 Score = 38.6 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 71/249 (28%), Gaps = 27/249 (10%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106
            +    D+  D  +RI     SE+   G+        L        ++     +   G++
Sbjct: 50  FVLPATDSQADYQVRIFTP-QSELPFAGHPTIGTAYALLEAGLVTAQKGKVVQQCAAGLV 108

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
               +  G IS ++ +P +                    I         N  +V +G   
Sbjct: 109 TLTVSDSGHISFELPKPKITPLD-------AMHTEKLAEILKCEINTQWNATLVDVGARW 161

Query: 167 AI---FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWER--GVG 220
            +      E  L                  +              + +++R++    G+ 
Sbjct: 162 IVLQAVNAEAVLATQPDFVALKQHDLEMKVTGATVFGFYESNDEQKHIEVRSFGPACGIN 221

Query: 221 LTAACGS--AACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAK 272
               CGS   + AS +    +        +   G      G L +E H +  + + G A 
Sbjct: 222 EDPVCGSGNGSVASFIRHYGILPAQNDTVLSSQGQALGRDGQLQLELHQD-KILVGGTAV 280

Query: 273 KEWEGKLDI 281
              +G + +
Sbjct: 281 TCIDGTIKL 289


>gi|229030743|ref|ZP_04186771.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1271]
 gi|228730591|gb|EEL81543.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1271]
          Length = 298

 Score = 38.6 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 19/200 (9%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112
            +    D  I        EV  CG+            +++ +  +T ET  G  V     
Sbjct: 64  SESEVADYKIEYFTP-KEEVDLCGHATIGSFAILMHVNKLFKNCYTIETNSG--VLTITI 120

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
              +        + + +I      D  D                  +VS G    +  ++
Sbjct: 121 KDDVIFMEQNEPIFYDVISPNEFIDCFDIKDIDN-------TYPIQIVSTGLKDILVPIK 173

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSA 228
            +     L +      K    S+  N+    + +     +              AA G++
Sbjct: 174 SE---TQLHTLEPNFEKIKAISKYYNVVGMHLYTFNDNRIICRNFAPLYDINEEAATGTS 230

Query: 229 ACASVVASGCLHKTNRAVSV 248
             A        +   + V V
Sbjct: 231 NGALACYLYEQNYLQKEVYV 250


>gi|297687817|ref|XP_002821398.1| PREDICTED: mucin-5B-like, partial [Pongo abelii]
          Length = 2386

 Score = 38.6 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 38/187 (20%), Gaps = 23/187 (12%)

Query: 88  LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147
                +  S   +T      A+   D  +      P      +  +           H G
Sbjct: 331 NMQHHECGSPCEDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDVTHSGCLPLGQCPCTHSG 390

Query: 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207
                        S        +   DL                      ++      S 
Sbjct: 391 RTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPGTCSVQGGAHIST 434

Query: 208 ESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSVKMLGGGLLIEWH 260
               L           +  C   +   +        T+       V++ + GG   I   
Sbjct: 435 YDEKLYDLHGDCSYVLSKKCADGSFIVLAELRKCGLTDNENCLKAVTLSLDGGDTAIRVQ 494

Query: 261 DNNHVFM 267
            +  VF+
Sbjct: 495 ADGGVFL 501


>gi|47568247|ref|ZP_00238950.1| phenazine biosynthesis protein PhzF family [Bacillus cereus G9241]
 gi|47555075|gb|EAL13423.1| phenazine biosynthesis protein PhzF family [Bacillus cereus G9241]
          Length = 250

 Score = 38.6 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 39/194 (20%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 16  SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 74

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +   +        
Sbjct: 75  DIIFMEQNKPIFYDVVSPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKNETRLHTLQ 134

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 135 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 188

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 189 YLYEQHNLQKEVYV 202


>gi|325122850|gb|ADY82373.1| hypothetical protein BDGL_001787 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 289

 Score = 38.2 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 81/286 (28%), Gaps = 43/286 (15%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72

Query: 75  QSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
              G               +K K        G  +       S  +    P    K+ PL
Sbjct: 73  PFAGHPTIGTAYALLEAGLIKAKEGKLVQQCGAGLVTLTVSESSHISFELPK--PKITPL 130

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
                        I         N  +V +G    +      +    +       A    
Sbjct: 131 DA---MHTEKLAEILKCEINTQWNAALVDVGARWIVLQA---VNAEAVLDSQPDFAALKE 184

Query: 193 FSEGVNLS--IARVTSLESLDLRTWER-------GVGLTAACGS--AACASVVASGCLHK 241
               + ++          + + +  E        G+     CGS   + AS +    +  
Sbjct: 185 HDLEMKVTGATVFGFHENNDEQKHIEVRSFAPSCGINEDPVCGSGNGSVASFIRYYGILP 244

Query: 242 TNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               V V   G      G L +E + +  + + G A    +G + +
Sbjct: 245 AQNDVVVSSQGGAVGRDGQLQLELYQD-KILVGGTAFTCIDGTIKL 289


>gi|291404275|ref|XP_002718617.1| PREDICTED: MAWD binding protein [Oryctolagus cuniculus]
          Length = 288

 Score = 38.2 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 8/229 (3%)

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSI 116
           S    +R      SE+  CG+        L  ++     + TF T+ G L A    DG +
Sbjct: 62  SSHFGLRWFTP-ASEIPLCGHATLASAAVLFHKINNVNSTLTFVTLSGELRATRAEDGVV 120

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDD 174
                 P        +         D           +R   V      +   +  ++ +
Sbjct: 121 MDFPLYPAHPQDFHEVEALIKTAIGDTLVQDVRYSPDIRGLLVRLSDSYDRSFLENLKVN 180

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASV 233
             +         +    +  +G            S     W  GV      GSA    S 
Sbjct: 181 TSNLLQVENTGKVKGLILTLKGEPGGETHAFDFYSRYFAPW-YGVAEDPVTGSAHTVLSS 239

Query: 234 VASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             S  L K   RA      GG L +    +  V + G+A    EG L +
Sbjct: 240 YWSQQLGKKEMRAFQCSCRGGELKLSLCSDGRVDIRGDAAVVVEGTLSV 288


>gi|289582249|ref|YP_003480715.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC
           43099]
 gi|289531802|gb|ADD06153.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC
           43099]
          Length = 302

 Score = 38.2 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 72/247 (29%), Gaps = 13/247 (5%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS 115
               D  ++       EV  CG+        L     +  + T ET  G+L    + DG+
Sbjct: 56  SDEADYRVQYFTP-TQEVDLCGHATIGSFAHLHEEGLEPGTTTLETNVGVLDIDVSDDGT 114

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173
           + +    P +    +  AR+ + +  ++  +            V S G P  +  +    
Sbjct: 115 VWMTQNTPQVREVDLSYARAAEVLGVEQAALEGARDDIPLA--VSSTGLPFLVVPITYLS 172

Query: 174 ---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
              D      A                        S     +     G+      G+A+ 
Sbjct: 173 DLGDAAPDMAAVEELTDEFDAAGVYLFTFDALDRESTLHGRMFAPGAGIPEDPVTGTASG 232

Query: 231 ASVVASGCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKE-WEGKLDIKTGKWI 287
           A           +  +   +++  G   ++      V + G   +    G   +     I
Sbjct: 233 AVAAYLDHFGAFDDDLPEELRLEQGH-YVDRPGYVRVQLEGSTVRVGGRGVTTLDGSIVI 291

Query: 288 KKNEDDE 294
            K+++DE
Sbjct: 292 PKDDEDE 298



 Score = 36.3 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 197 VNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256
              +  + +      ++ +         CG A   S              +++   G L 
Sbjct: 48  SETAFLQASDEADYRVQYF-TPTQEVDLCGHATIGSFAHLHEEGLEPGTTTLETNVGVLD 106

Query: 257 IEWHDNNHVFMT 268
           I+  D+  V+MT
Sbjct: 107 IDVSDDGTVWMT 118


>gi|302563545|ref|NP_001180703.1| phenazine biosynthesis-like domain-containing protein [Macaca
           mulatta]
 gi|297301274|ref|XP_002805753.1| PREDICTED: phenazine biosynthesis-like domain-containing
           protein-like isoform 2 [Macaca mulatta]
          Length = 288

 Score = 38.2 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119
             +R      SEV  CG+        L  ++K  + T   +   G L A++  DG +   
Sbjct: 65  FGLRWFTP-ASEVPLCGHATLASAAVLFYKIKNMNSTLTFVTLSGELRARQAEDGIVLDL 123

Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179
              P+       +         +            R   +      +  F     +   +
Sbjct: 124 PLYPVYPQDFHEVEDLIKTAIGNTLVQDICYSPDTRKLLLRLSDTYNRSFLENLKVNTEN 183

Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRT--WERGVGLTAACGSA-ACASVVAS 236
           L    N      +          +  S +        W  GV      GSA A  S   S
Sbjct: 184 LLQVENTGKVKGLILTLKGEPGGQSQSFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 242

Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279
             L K           GG L I       V + G A    EG L
Sbjct: 243 QQLGKKEMHAFQCSQRGGELGISLRPAGRVDIRGGAAVVLEGTL 286


>gi|118618210|ref|YP_906542.1| hypothetical protein MUL_2768 [Mycobacterium ulcerans Agy99]
 gi|118570320|gb|ABL05071.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 280

 Score = 38.2 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 27/241 (11%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVA 108
            +   +D +    +RI    G E+   G                   +       G  + 
Sbjct: 51  FVLPPEDPNAHHKLRIFTPGG-ELAFAGHPTLGSAHAWLEHRESPGCADHIVQECGAGLV 109

Query: 109 KENRDGSISVDMGEPILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           +  R   +      P+     +       +  +F            V++       VV +
Sbjct: 110 QLRRHHGMLSFAAPPMRRTGDLDEAYRTQIVAAFGIARDQVLAHQWVDNGP--GWAVVQL 167

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
                +  +E D      A  G + A          L                  GV   
Sbjct: 168 ATAQEVLDLEPDFSQMSAAMVGAIGAYPSGSEHAFELRTFAP-----------GVGVAED 216

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEG 277
             CGS                 + +V         G + I    +  V+++G     ++G
Sbjct: 217 PVCGSMNAGVAQWLTSTGTAPLSYTVSQGARLARTGEISITTDPDGVVWVSGATSTCFKG 276

Query: 278 K 278
            
Sbjct: 277 T 277


>gi|212704355|ref|ZP_03312483.1| hypothetical protein DESPIG_02410 [Desulfovibrio piger ATCC 29098]
 gi|212672214|gb|EEB32697.1| hypothetical protein DESPIG_02410 [Desulfovibrio piger ATCC 29098]
          Length = 282

 Score = 38.2 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLIEWHDN--NHVFMTGEAKKEWEGKL 279
            ACGS A A  +         + + +   GG  L +   D+     F+ G       G++
Sbjct: 217 NACGSGALALALLLAAKG-NRKPLDIMQPGGSSLHVHIPDDEQGKAFIDGPVDLVARGRV 275

Query: 280 DIKTGKWIKKNE 291
                 W+   +
Sbjct: 276 ------WLPDAQ 281


>gi|42782163|ref|NP_979410.1| PhzF family phenazine biosynthesis protein [Bacillus cereus ATCC
           10987]
 gi|42738088|gb|AAS42018.1| phenazine biosynthesis protein PhzF family [Bacillus cereus ATCC
           10987]
          Length = 285

 Score = 38.2 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 47/198 (23%), Gaps = 15/198 (7%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D  I        EV  CG+        L    K     +       V       
Sbjct: 51  SESEIADYKIEYFTP-KEEVDLCGHATIGSFAILMHVNKLFKNRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + +I      D  D                  +VS G    +  ++ +
Sbjct: 110 DIIFMEQNEPIFYDVISPNEFIDCFDSKAIDN-------TYPIQIVSTGLKDILIPIKSE 162

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSAAC 230
                L +      K    S+  N+    + +     +              AA G++  
Sbjct: 163 ---TLLHTLQPNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLYDINEEAATGTSNG 219

Query: 231 ASVVASGCLHKTNRAVSV 248
           A        H   + V V
Sbjct: 220 ALACYLYEQHYLQKEVYV 237


>gi|156977830|ref|YP_001448736.1| epimerase [Vibrio harveyi ATCC BAA-1116]
 gi|156529424|gb|ABU74509.1| hypothetical protein VIBHAR_06618 [Vibrio harveyi ATCC BAA-1116]
          Length = 266

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 70/226 (30%), Gaps = 18/226 (7%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           D  +R       EV  CG+G     + L  +   K        G  +A +   G +   +
Sbjct: 54  DMRLRWFTP-KVEVALCGHGTLATAQILKEQGLAKV-------GDTIAFQTLSGELHAKV 105

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            E  ++          D              L L+   VVS     +  F+E D     +
Sbjct: 106 NESTIELDFPSTQLEMDVEQDATLLAA----LGLKAEQVVSYAQFDSKGFIEVD-SEQTV 160

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSAACA-SVVAS 236
                             +  A+  S     +  +     GV      GSA CA +   +
Sbjct: 161 LELEPNFDALKNIQGRGVVVTAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWA 220

Query: 237 GCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
             L +   RA      GG L  E  +N  + + G AK    GKL +
Sbjct: 221 QKLGQNQFRAYQASARGGHLQTELLENGRIKLIGSAKTVISGKLKV 266


>gi|228958533|ref|ZP_04120253.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801160|gb|EEM48057.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 287

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 19/200 (9%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112
            +    D           EV  CG+            +++ R  +T ET  G+L      
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNHYTIETNSGVLTITITD 111

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           D                 P+       +         +        +VS G    +  ++
Sbjct: 112 DIIFMEQNK---------PIFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIK 162

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSA 228
            ++    L +      K    S+  N+    + +     +              AA G++
Sbjct: 163 SEI---QLHALQPNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLYNINEEAATGTS 219

Query: 229 ACASVVASGCLHKTNRAVSV 248
             A        H   + V V
Sbjct: 220 NGALACYLYEQHYLQKEVYV 239


>gi|110596858|ref|ZP_01385148.1| Phenazine biosynthesis PhzC/PhzF protein [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341545|gb|EAT60005.1| Phenazine biosynthesis PhzC/PhzF protein [Chlorobium ferrooxidans
           DSM 13031]
          Length = 259

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 21/222 (9%)

Query: 62  AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121
             +R       E+  CG+        +   +                   + G +     
Sbjct: 57  FKLRWFTPVR-ELDLCGHATLAAAHVIFDIIGYSRQRITFETRSGDLFVQKRGELLEMDF 115

Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
                    PL   F ++  +     P+      +   +              +      
Sbjct: 116 PASP-----PLPCGFSEILAEALGKRPLEVWASDDYLALFDSEATL-----RAITPDYAM 165

Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-VASGCLH 240
                L    + + G ++                + G+      GSA C      +  L 
Sbjct: 166 LCELDLRGVIITAPGSDVDFVSR-------FFAPKFGIHEDPVTGSAHCTLAPYWANKLG 218

Query: 241 KTNRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
           K       V   GG +  E   +  V ++G A    E ++ +
Sbjct: 219 KHTLTAKQVSRRGGNIACEVKGD-RVLLSGSAVTVMETEITL 259


>gi|254586163|ref|XP_002498649.1| ZYRO0G15378p [Zygosaccharomyces rouxii]
 gi|238941543|emb|CAR29716.1| ZYRO0G15378p [Zygosaccharomyces rouxii]
          Length = 277

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 77/277 (27%), Gaps = 35/277 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +V+D       ++ D +  ++   N      +     +      + D  +RI     +E+
Sbjct: 22  VVLDA----QGLSEDQMQTVARWTN------LSETTFVLPPTHPNADYTLRIFTP-RTEL 70

Query: 75  QSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
              G            +  +K K+                DG +   +  P   +K I  
Sbjct: 71  PFAGHPTLGSAHALVESGLVKPKNGILVQQCAQGFVPIRVDGGVFT-LELPDAKFKEIS- 128

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
                 ++                P  V     +    +  D     LA     L     
Sbjct: 129 QEDISTLESILKCKLEAPAPVDVGPTFVIGRVENIETLLGLDPDLNRLAELERKLEV--- 185

Query: 193 FSEGVNLSIARVTSLESLDLRTW--ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250
                    A       +++RT+    GV     CGS   A  V   C         +  
Sbjct: 186 ---TGITLFADYPDSTDIEVRTFAPSSGVSEDPVCGSGNGALAVFRKCRGLLETPSYMAK 242

Query: 251 LG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
            G      G + I    N+ V + GE     +G+L++
Sbjct: 243 QGRKVGRDGRVYITV--NSVVRVGGECVTCLKGELNV 277


>gi|68006370|ref|NP_001018772.1| enhancer of RNA-mediated gene silencing [Schizosaccharomyces pombe
           972h-]
 gi|29839364|sp|Q8NIL3|AES1_SCHPO RecName: Full=Antisense-enhancing sequence 1; AltName: Full=AES
           factor 1
 gi|20873642|emb|CAD31747.1| enhancer of RNA-mediated gene silencing [Schizosaccharomyces pombe]
          Length = 296

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 64/198 (32%), Gaps = 7/198 (3%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGIL 106
            +        D  +RI   +  E+   G+        +               E + G++
Sbjct: 50  FVQKPTIDKADYRLRIFTPEC-ELSFAGHPTIGSCFAVVESGYCTPKNCKIIQECLAGLV 108

Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166
               + +      +   +  +K++  + +      +   I       +  P ++  G   
Sbjct: 109 ELTIDGEKDEDTWISFKLPYYKILQTSETAISEVENALGIPLNYSSQVSPPVLIDDGPKW 168

Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--GVGLTAA 224
            +  + +     +L      L++    ++ + +++      +S + R++     V    A
Sbjct: 169 LVIQLPNATDVLNLVPKFQSLSQVCKNNDWIGVTVFGELGKDSFESRSFAPLIHVNEDPA 228

Query: 225 CGSAACASVVASGCLHKT 242
           CGS A A  V  G   KT
Sbjct: 229 CGSGAGAVGVYIGSSQKT 246


>gi|229109706|ref|ZP_04239292.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-15]
 gi|228673747|gb|EEL29005.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-15]
          Length = 287

 Score = 37.8 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I          + ++      D  D           +       + +     I      
Sbjct: 112 DIIFMEQNKPRFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 226 YLYEQHYLQKEVYV 239


>gi|42566256|ref|NP_192194.2| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis
           thaliana]
 gi|51536516|gb|AAU05496.1| At4g02850 [Arabidopsis thaliana]
 gi|51972140|gb|AAU15174.1| At4g02850 [Arabidopsis thaliana]
 gi|332656838|gb|AEE82238.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis
           thaliana]
          Length = 306

 Score = 37.8 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 22/249 (8%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILV 107
           LI           +R       E+  CG+        + S        +  F T  GIL 
Sbjct: 58  LIPIPGSEPPRFLLRWFTAVA-EMDICGHATLASAHSIFSNSLVGSSDTVEFSTNSGILT 116

Query: 108 AKENRDGSISVDMGEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163
           AK       S       +++ +I      ++      +       V+    +   ++   
Sbjct: 117 AKRLS-DCDSKRSFLIEMNFPVITTCEYSSKDVSIFSKALNGATIVDVRETKTDRLIFKP 175

Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL----SIARVTSLESLDLRTWER-- 217
              A      D     L+S+ +++   P   + V       I    + +        R  
Sbjct: 176 LIGAFKTTSTDQIIVVLSSWESVIEFQPRVDDIVKCPGKVMIVTAAAPQGSPFDFCSRLF 235

Query: 218 ----GVGLTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGE 270
               G+   + CGSA C+     S  ++K +    +     G L + +  +   V +TG+
Sbjct: 236 APKLGLNEDSVCGSAHCSLAHYWSLKMNKCDFVAFAASQRSGTLKVHYDKEKQRVLLTGK 295

Query: 271 AKKEWEGKL 279
           A    +G +
Sbjct: 296 AVTVMKGSI 304


>gi|47229749|emb|CAG06945.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1285

 Score = 37.8 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 10/192 (5%)

Query: 16   NKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75
            N+ ++   +    + T+D    +   +     QI+++        +           E  
Sbjct: 1058 NEFII--TQHPLPHTTTDFWRMIWDHNA----QIIVMLPDNQGLAEDEFVYW-PSREEAM 1110

Query: 76   SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            +C      ++      +  +         IL A ++           P       PL+ +
Sbjct: 1111 NCITFTVTLISRDRLCLSNEEQII-IHDFILEATQDDYVLEVRHFQCPKWPNPDAPLSST 1169

Query: 136  FDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
            F+ +   +      +   +       VS G   A+  +   L +  +     +     + 
Sbjct: 1170 FELISVIKEEAMTRDGPTIVHDEYGAVSAGMFCALTTLSQQLENEGVVDIYQVAKMINLM 1229

Query: 194  SEGVNLSIARVT 205
              GV  +I +  
Sbjct: 1230 RPGVFTNIEQYH 1241


>gi|266619209|ref|ZP_06112144.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi
           DSM 13479]
 gi|288869260|gb|EFD01559.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi
           DSM 13479]
          Length = 317

 Score = 37.8 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 56/192 (29%), Gaps = 13/192 (6%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENR 112
            Q    D  +      G EV  CG+             ++K+  +T ET  GIL      
Sbjct: 82  SQSELADYKLEYFTPTG-EVPLCGHATIAAFVVLNYFGQLKKCEYTIETKSGILSIAVKD 140

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
            G I +    P    + + LA   D +                   +VS G    I  VE
Sbjct: 141 GGVIFMQQNTPEFY-ETLELADVVDCLG-----FNADTAPGNLPVQIVSTGLRDIIVPVE 194

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE----RGVGLTAACGSA 228
           + L    +      ++K       V +    +     L           G+   +A G++
Sbjct: 195 NPLVLETMVPDFAAVSKLSQKWNCVGIHAFSLVEDGKLTAVCRNFAPLYGIDEESATGTS 254

Query: 229 ACASVVASGCLH 240
            CA         
Sbjct: 255 CCALACYLYQYG 266


>gi|229157332|ref|ZP_04285410.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 4342]
 gi|228626059|gb|EEK82808.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 4342]
          Length = 286

 Score = 37.8 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 52  SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 110

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 111 DIIFMEQNKPIFYDVVSPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKSETRLHTLQ 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 171 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 224

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 225 YLYEQHNLQKEVYV 238


>gi|228986893|ref|ZP_04147020.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772842|gb|EEM21281.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 286

 Score = 37.8 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 52  SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 110

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 111 DIIFMEQNKPIFYDVVSPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKSETRLHTLQ 170

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 171 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 224

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 225 YLYEQHNLQKEVYV 238


>gi|4263518|gb|AAD15344.1| similar to PHZF, catalyzing the hydroxylation of
           phenazine-1-carboxylic acid to
           2-hydroxy-phenazine-1-carboxylic acid [Arabidopsis
           thaliana]
 gi|7269770|emb|CAB77770.1| putative protein [Arabidopsis thaliana]
          Length = 313

 Score = 37.8 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 218 GVGLTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274
           G+   + CGSA C+     S  ++K +    +     G L + +  +   V +TG+A   
Sbjct: 247 GLNEDSVCGSAHCSLAHYWSLKMNKCDFVAFAASQRSGTLKVHYDKEKQRVLLTGKAVTV 306

Query: 275 WEGKL 279
            +G +
Sbjct: 307 MKGSI 311


>gi|300173344|ref|YP_003772510.1| hypothetical protein LEGAS_1043 [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887723|emb|CBL91691.1| Uncharacterized isomerase [Leuconostoc gasicomitatum LMG 18811]
          Length = 283

 Score = 37.8 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFM 267
               +         CG A   +      L+K +    +++   G L IE   +  VFM
Sbjct: 57  FCLEYFTPTEEVPLCGHATIGTFAILNLLNKLSKNNYTIETKSGVLSIEVDPDGMVFM 114


>gi|297622131|ref|YP_003710268.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU
           86-1044]
 gi|297377432|gb|ADI39262.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU
           86-1044]
          Length = 284

 Score = 37.4 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 70/236 (29%), Gaps = 18/236 (7%)

Query: 56  QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKE 110
              + D  +R     G E++ CG+     +  +      K      F  ET  G++  + 
Sbjct: 53  PSETADFKLRYFTPTGDEIRFCGHATIGAMSAMEQDGWVKHGEKKKFRAETNAGVINLEI 112

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
           +          E   +  L P   S + +D       P+     R  + ++  +   +  
Sbjct: 113 DCTAGKPSFNFE-SPEVNLEPFTVSLEPLDFPDVIASPMIETGNRYLY-LAFKDLETLGG 170

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
           +  ++           L    +    +        +           GV      GS   
Sbjct: 171 LRPNMDEVK----QYCLEHEIVMICALTPFAIDPKNHVHARAFGPAVGVNEDPFTGSMQG 226

Query: 231 ASVVASGCLHKTNRAVS-VKMLGGGLL-----IEWHDNNHVF-MTGEAKKEWEGKL 279
                       N +++ +    G  L     ++   +++++ +  EA   ++ ++
Sbjct: 227 GLFGYCRETGLINPSLTSIYTEQGHFLGRPGYVKIDYDDNIYRLYAEATPVFKTEM 282


>gi|293609585|ref|ZP_06691887.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828037|gb|EFF86400.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 289

 Score = 37.4 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 81/286 (28%), Gaps = 43/286 (15%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +++D       +TS+ + A++   N      +     +    D+  D  +RI     SE+
Sbjct: 24  VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72

Query: 75  QSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132
              G               +K K        G  +       S  +    P    K+ PL
Sbjct: 73  PFAGHPTIGTAYALLEAGLIKAKEGKLVQQCGAGLVTLTVSESSHISFELPK--PKITPL 130

Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192
                        I         N  +V +G    +      +    +       A    
Sbjct: 131 DA---MHTEKLAEILKCEINTQWNAALVDVGARWIVLQA---VNAEAVLDSQPDFAALKE 184

Query: 193 FSEGVNLS--IARVTSLESLDLRTWER-------GVGLTAACGS--AACASVVASGCLHK 241
               + ++          + + +  E        G+     CGS   + AS +    +  
Sbjct: 185 HDLEMKVTGATVFGFHENNDEQKHIEVRSFAPSCGINEDPVCGSGNGSVASFIRYYGILP 244

Query: 242 TNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
               V +   G      G L +E + +  + + G A    +G + +
Sbjct: 245 AQNDVVLSSQGGAVGRDGQLQLELYQD-KILVGGTAVTCIDGTIKL 289


>gi|255100898|ref|ZP_05329875.1| hypothetical protein CdifQCD-6_08804 [Clostridium difficile
           QCD-63q42]
 gi|255306788|ref|ZP_05350959.1| hypothetical protein CdifA_09357 [Clostridium difficile ATCC 43255]
          Length = 260

 Score = 37.4 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 72/228 (31%), Gaps = 20/228 (8%)

Query: 57  DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116
               +  +R      +E+  CG+        +++ +       +        +  R+G++
Sbjct: 50  KGKGNYELRWFTP-KAEIDLCGHATLAAAYVISNFIDVNVKRIDFFTQSGKLEVTRNGNL 108

Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
              +       +++P+         +     P      R+  ++       I +      
Sbjct: 109 YEMIF-----PEIMPIEIELSPQQANLIGCVPSAVYSSRDLILLLNSEQEVINYKP---N 160

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236
           +  L    + L           +  A+ ++ + +               GS+ C  +   
Sbjct: 161 YAQLRKLTDWL---------GIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYW 211

Query: 237 GCLHKTNRAVSVKM--LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
                 ++ V+ ++   GG +  E   +N V ++GEA    +G + I 
Sbjct: 212 SEKLGKHKMVAAQLSNRGGIIQCEVLKDNTVKISGEAVLFMQGTIKID 259


>gi|229018451|ref|ZP_04175313.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1273]
 gi|229024707|ref|ZP_04181146.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1272]
 gi|228736550|gb|EEL87106.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1272]
 gi|228742803|gb|EEL92941.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1273]
          Length = 293

 Score = 37.4 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 39/194 (20%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 59  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 117

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +        + + ++      D  D           +       + +            
Sbjct: 118 DMIFMEQNKPIFYDVVSPNEFIDCFDIKAIDNTYPIQIVSTGLKDILIPIKSETRLHALQ 177

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           L    +           M     N +     +   L        +   AA G++  A   
Sbjct: 178 LNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 231

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 232 YLYEQHYLQKEVYV 245


>gi|126651765|ref|ZP_01723967.1| Phenazine biosynthesis protein phzF [Bacillus sp. B14905]
 gi|126591443|gb|EAZ85550.1| Phenazine biosynthesis protein phzF [Bacillus sp. B14905]
          Length = 284

 Score = 37.4 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 36/194 (18%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
                 D           EV  CG+        L    K     +       V       
Sbjct: 51  SASEMADYKFEYFTP-KEEVDLCGHATIGSFTILMHFNKLFKDRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I          + +I      D +D           +       + +            
Sbjct: 110 DIIFMEQNKPKFYDVISPNEFIDCIDSKAIDNQYPIQIVSTGLKDILIPIISETQLHALQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N       +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISEYYHVVGMHVYTFNDDRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 224 YLYEQHHLQKEVYV 237


>gi|145353583|ref|XP_001421089.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581325|gb|ABO99382.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 2146

 Score = 37.4 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 7/200 (3%)

Query: 31  TSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89
           TS+       + N ++D I + I +    S      + +   +    C +   C   F  
Sbjct: 473 TSNERKECRAETNANYDGIQISIVNAVSWSACCDACLADPACAVWNFCDDVSGCDGEFAY 532

Query: 90  SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149
                K F          A    DG   V         + +P        +   +   P+
Sbjct: 533 QTCVLKLFLVGGDPQKPPAIARGDGVPWVSGSLVDRIPEPVPSIEGCRVEENANYKGHPL 592

Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209
           N     +  VV           +    +  +         +  +         +  S E 
Sbjct: 593 NS---GSDLVVDSETECCAECKKMKKCNAWVFCASIDGCGNEYYDYKFGECWLKKLSKED 649

Query: 210 ---LDLRTWERGVGLTAACG 226
              + +  WERG  +T   G
Sbjct: 650 VETIPVPAWERGENVTWTSG 669


>gi|228939398|ref|ZP_04101988.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972277|ref|ZP_04132890.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978891|ref|ZP_04139258.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis Bt407]
 gi|228780848|gb|EEM29059.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis Bt407]
 gi|228787461|gb|EEM35427.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820293|gb|EEM66328.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939969|gb|AEA15865.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 336

 Score = 37.4 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 102 SESEIADYKFEYFTP-KEEVDLCGHATIGSFTILMHLNKNFKNRYTIETNSGVLTITIKD 160

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 161 DIIFMEQNKPIFYDVVSPNEFIDCFDIKDIDNNYPIQIVSTGLKDILIPIKSETQLHALQ 220

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           +     N +     +   L        +   AA G++  A   
Sbjct: 221 PNFEKIKEISKYYNVVGIHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 274

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 275 YLYEQHYLQKEVYV 288


>gi|218234344|ref|YP_002366964.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264]
 gi|218162301|gb|ACK62293.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264]
          Length = 287

 Score = 37.4 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITITD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +     I      
Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                    + V V
Sbjct: 226 YLYEQDYLKKEVYV 239


>gi|229190349|ref|ZP_04317350.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 10876]
 gi|228593133|gb|EEK50951.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 10876]
          Length = 285

 Score = 37.4 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 51  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIENKYPIQIVSTGLKDILIPIKSETQLHALQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 224 YLYEQHYLQKEVYV 237


>gi|20466358|gb|AAM20496.1| putative protein [Arabidopsis thaliana]
          Length = 294

 Score = 37.4 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 17/242 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            +           +R       EV  C +        L S     S   E +    +   
Sbjct: 55  FLIPITGFQARFSLRWFTPLA-EVDLCDHATLASAHCLFSNGLVDSDMVEFVTRSGILT- 112

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170
                +S        + K        +        +   +         ++      I  
Sbjct: 113 --AKRVSDTSELSDGEVKGGTFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKA 170

Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVG 220
              + +   L S  ++    P   + +       I             + R      GV 
Sbjct: 171 TATNNFLVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVD 230

Query: 221 LTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277
               CGSA CA     S  ++K +          G + I    +   V + G+A    EG
Sbjct: 231 EDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEG 290

Query: 278 KL 279
            +
Sbjct: 291 HV 292


>gi|184158813|ref|YP_001847152.1| epimerase PhzC/PhzF [Acinetobacter baumannii ACICU]
 gi|332875183|ref|ZP_08443016.1| phenazine biosynthesis protein, PhzF family [Acinetobacter
           baumannii 6014059]
 gi|183210407|gb|ACC57805.1| predicted epimerase, PhzC/PhzF [Acinetobacter baumannii ACICU]
 gi|322507374|gb|ADX02828.1| epimerase, PhzC/PhzF [Acinetobacter baumannii 1656-2]
 gi|323518728|gb|ADX93109.1| epimerase, PhzC/PhzF [Acinetobacter baumannii TCDC-AB0715]
 gi|332736627|gb|EGJ67621.1| phenazine biosynthesis protein, PhzF family [Acinetobacter
           baumannii 6014059]
          Length = 289

 Score = 37.4 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 19/245 (7%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106
            +    D+  D  +RI     SE+   G+        L        K      +   G++
Sbjct: 50  FVLPATDSHADYQVRIFTP-QSELPFAGHPTIGTAYALLEAGLVTAKGGKLVQQCGAGLV 108

Query: 107 VAKENRDGSISVDMGEPILDW-KLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGN 164
               +    IS ++ +P +     I   +  + +  +                 V+   N
Sbjct: 109 TLTVSDSKHISFELPQPKITPLDAIHTEKLVEILKCEINTQWNATLVDVGARWVVLQAVN 168

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
             A+   + D            +    +F    N    +   + S        G+     
Sbjct: 169 AEAVLATQPDFAALKQHDLEMKVTGATVFGFYENNDEQKHIEVRSFAPSC---GINEDPV 225

Query: 225 CGS--AACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWE 276
           CGS   + AS +    +      V     G      G L +E + +  + + G A    +
Sbjct: 226 CGSGNGSVASFIRYHGILPAQNDVVFSSQGQALGRDGQLKLELYQD-KILVGGTAVTCID 284

Query: 277 GKLDI 281
           G + +
Sbjct: 285 GSITL 289


>gi|304408425|ref|ZP_07390071.1| phenazine biosynthesis protein PhzF family [Paenibacillus
           curdlanolyticus YK9]
 gi|304342610|gb|EFM08458.1| phenazine biosynthesis protein PhzF family [Paenibacillus
           curdlanolyticus YK9]
          Length = 293

 Score = 37.4 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 60/246 (24%), Gaps = 21/246 (8%)

Query: 54  DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110
                  D  IR     G E+  CG+     +  L +R       + T ET  GIL  + 
Sbjct: 51  PLPSDRADWRIRFFTP-GHEISLCGHATMATIYALKTRGLLGDLTTLTIETKAGILSIQL 109

Query: 111 NRDG---SISVDMGEPILDW-----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           +       I++    P           +  A   D+ D                  +   
Sbjct: 110 DEREEGLFITMQQAAPQFASFNGSIAQLAYAMGIDQEDIATELPVVYGSTGTWTLIIPVK 169

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222
           G          +     +       + HP   E  +   A                    
Sbjct: 170 GLAACERMKPRNELFPSVLEEMPRASLHPFCLETYDP--AAHMHARHFSSPFSGTIEDPV 227

Query: 223 AACGSAACASVVASGCLHKTNR--AVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEW 275
               S    +  A       +    + V+        G + +   +   + + G A    
Sbjct: 228 TGTASGVMGAYYAKYIQQGQDALFQLRVEQGQEIGRDGRVDVTVANGTGITIRGNAVYVN 287

Query: 276 EGKLDI 281
           E ++ I
Sbjct: 288 EFEVSI 293


>gi|7513163|pir||JE0352 mucin MUC5B, tracheobronchial - human
 gi|3789927|gb|AAC67545.1| mucin [Homo sapiens]
          Length = 1321

 Score = 37.4 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 41/199 (20%), Gaps = 24/199 (12%)

Query: 76  SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            C          +  +      T         A+  +D  +      P      I  +  
Sbjct: 320 RCPELCPRTCTNMQHQNCGSPCTDTCSN-PQRAQLCKDHCVDRCFCPPGTVLDNITHSGC 378

Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195
                    H G             S        +   DL                    
Sbjct: 379 LPLGQCPCTHGGTRYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 422

Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248
             ++      S     L           +  C  ++   +   G    T+       V++
Sbjct: 423 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELGRCGLTDNENCLKAVTL 482

Query: 249 KMLGGGLLIEWHDNNHVFM 267
            + GG   I    +  VF+
Sbjct: 483 SLDGGDTAIRVQADGGVFL 501


>gi|290956209|ref|YP_003487391.1| long chain fatty acid-CoA ligase [Streptomyces scabiei 87.22]
 gi|260645735|emb|CBG68826.1| putative long chain fatty acid-CoA ligase [Streptomyces scabiei
           87.22]
          Length = 608

 Score = 37.1 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           C +AA A+           R +     G  + +   D+  +++ G     ++G L+
Sbjct: 390 CTAAATANPPERTRYGTVGRPI----PG--VSVHIADDGEIWLRGP--NVFQGYLN 437


>gi|209516128|ref|ZP_03264987.1| phenazine biosynthesis protein PhzF family [Burkholderia sp. H160]
 gi|209503412|gb|EEA03409.1| phenazine biosynthesis protein PhzF family [Burkholderia sp. H160]
          Length = 348

 Score = 37.1 bits (84), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 75/283 (26%), Gaps = 36/283 (12%)

Query: 19  LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74
           +V D     D + +  + A++   N      +     +    DA+ D  +RI    G   
Sbjct: 75  VVFDA----DALDTAQMQAIARWTN------LSETTFLLKPTDAAADYRVRIFTPGGELP 124

Query: 75  QSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133
            +    +        S    K         G+ + +           G          + 
Sbjct: 125 FAGHPTLGTAHALRESGYHPKQAGRLIQQCGVGLVELKALDGADSAHGAWAFAAPPARVT 184

Query: 134 RSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVED-------DLYHYDLASFGN 185
              +   +         +  F   P  V  G P  +  V+        +     LA   +
Sbjct: 185 PLAEHRYKALTTALRSQSIDFSAPPCAVDNGAPWLVVRVDSARTCLALEPDAAALAELVH 244

Query: 186 LLAKH---PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK- 241
            +  H          +             +     G G     GSA  A         + 
Sbjct: 245 SVDTHGVAVYGPHDADGPATFEV---RCLMAGSGFGTGEDPVTGSANAALAGLLNLQQRR 301

Query: 242 -----TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278
                T R  +V    G + + + D+ + +++ G +    +G 
Sbjct: 302 PGARYTARQGTVLGRAGDVSVHYDDSRDKIWIGGPSVTIVDGT 344


>gi|229150489|ref|ZP_04278705.1| Phenazine biosynthesis protein phzF [Bacillus cereus m1550]
 gi|228632982|gb|EEK89595.1| Phenazine biosynthesis protein phzF [Bacillus cereus m1550]
          Length = 287

 Score = 37.1 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESELADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITITD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +     I      
Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                    + V V
Sbjct: 226 YLYEQDYLKKEVYV 239


>gi|228952607|ref|ZP_04114683.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229079435|ref|ZP_04211976.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-2]
 gi|229178634|ref|ZP_04305998.1| Phenazine biosynthesis protein phzF [Bacillus cereus 172560W]
 gi|228604792|gb|EEK62249.1| Phenazine biosynthesis protein phzF [Bacillus cereus 172560W]
 gi|228703892|gb|EEL56337.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-2]
 gi|228807073|gb|EEM53616.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 285

 Score = 37.1 bits (84), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 51  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIENKYPIQIVSTGLKDILIPIKSETQLHALQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                    + V V
Sbjct: 224 YLYEQDYLKKEVYV 237


>gi|228928521|ref|ZP_04091560.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228831126|gb|EEM76724.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 285

 Score = 37.1 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 43/196 (21%), Gaps = 11/196 (5%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112
            +    D           EV  CG+            +++ R  +T ET  G+L      
Sbjct: 51  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109

Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172
           D            D   +      D  D           +       + +          
Sbjct: 110 DSIFMEQNNPIFYDA--VSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIKSETRLHA 167

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
             L    +           M     N       +   L        +   AA G++  A 
Sbjct: 168 LQLSFEKIKEISKYYNVVGMHLYTFNDDRIICRNFAPLY------DINEEAATGTSNGAL 221

Query: 233 VVASGCLHKTNRAVSV 248
                  H   + V V
Sbjct: 222 ACYLHEQHNLQKEVYV 237


>gi|255101113|ref|ZP_05330090.1| hypothetical protein CdifQCD-6_09919 [Clostridium difficile
           QCD-63q42]
          Length = 304

 Score = 37.1 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 66/281 (23%), Gaps = 25/281 (8%)

Query: 24  RGCHDNITSDAINALSTDDNTHFDQIML--IHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
               D ++   +  ++ + N      +   +      + D  IR      +EV  CG+  
Sbjct: 26  ITNADGLSESQMQKIARELNNSETAFIFNNLAKNHQENYDVHIRFFTP-TNEVPICGHAT 84

Query: 82  RCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141
                      +  + T     G  +   +     +            +P         R
Sbjct: 85  IAAHYVRAVENQFNNKTVFQKTGAGILPVDIIKKDNDYEIIMTQGKIEVPPPLQQTYQKR 144

Query: 142 DRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200
                G     +    P  +S      +     +L   +  S               N  
Sbjct: 145 LLNAFGILKKDIRTDCPIAISSTGHSKVMIGIKELSTLNSLSPNLYELSKISQEIKCNGH 204

Query: 201 IARVTSLESLDLRTWER------GVGLTAACGSAACASVVASGCLHKTNRAVS------- 247
                      L+   R      G+      G+A                  +       
Sbjct: 205 YIFTL-HNKETLQVHGRMFAPAIGISEDPVTGNANGPLGAYLVHYKVIPTPNTEFIFEAV 263

Query: 248 ----VKMLGGGL-LIEWHDNNHVF--MTGEAKKEWEGKLDI 281
               +K  G  L  +   DN  V   + G+A   +   ++I
Sbjct: 264 QGEAIKRKGKMLVKVIILDNKPVEVKIIGKAVIAFSTNIEI 304


>gi|183598974|ref|ZP_02960467.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827]
 gi|188021191|gb|EDU59231.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827]
          Length = 316

 Score = 37.1 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 9/198 (4%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSC-GNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109
           L+   Q+    A +   N +G       G             +     T ET  G + A 
Sbjct: 67  LLCKPQNPQATAGVIFFNNEGYLGMCGHGTIGLIASLAYLGTITVGEHTIETPVGDVQAT 126

Query: 110 ENRDGSISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
            + DGS+S+         K + +       +  D    G    L  ++P  +   N  A+
Sbjct: 127 LHPDGSVSIQNVYSYRYRKSVAVKVPDVGMVTGDIAWGGNWFFLVEQSPVEIHHRNTKAL 186

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL--RTWERGVGLTAACG 226
                 +    +           +    +  + ++  S   +      ++R       CG
Sbjct: 187 TETCLKIKAALVEQHIYGKDDQEIDHIELFAASSQADSQSFVLCPGGAYDRSP-----CG 241

Query: 227 SAACASVVASGCLHKTNR 244
           +   A +       K N 
Sbjct: 242 TGTSAKLACLAADGKLNE 259


>gi|255655939|ref|ZP_05401348.1| hypothetical protein CdifQCD-2_09619 [Clostridium difficile
           QCD-23m63]
 gi|296450639|ref|ZP_06892392.1| possible phenazine biosynthesis protein [Clostridium difficile
           NAP08]
 gi|296879243|ref|ZP_06903238.1| possible phenazine biosynthesis protein [Clostridium difficile
           NAP07]
 gi|296260483|gb|EFH07325.1| possible phenazine biosynthesis protein [Clostridium difficile
           NAP08]
 gi|296429786|gb|EFH15638.1| possible phenazine biosynthesis protein [Clostridium difficile
           NAP07]
          Length = 306

 Score = 36.7 bits (83), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 74/284 (26%), Gaps = 29/284 (10%)

Query: 24  RGCHDNITSDAINALSTDDNTHFDQIML--IHDFQDASVDAFIRIINCDGSEVQSCGNGM 81
               D ++   +  ++ + N      +   +      + D  IR      +EV  CG+  
Sbjct: 26  ITNADGLSESQMQKIARELNNSETAFIFNKLAKNHQENYDVHIRFFTP-TNEVPICGHAT 84

Query: 82  RCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141
                      +  + T     G  +   +       +  E I+    I ++    +  +
Sbjct: 85  IAAHYVRAVENQLNNKTVFQKTGAGILPVDIIKK--DNDYEIIMTQGKIEVSPPLQQTYQ 142

Query: 142 DRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVN 198
           +R           +    P  +S      +     +L   +  S               N
Sbjct: 143 ERLLNAFGILKEDIRTDCPIAISSTGHSKVMIGIKELSTLNSLSPNLYELSKISQEIKCN 202

Query: 199 LSIARVTSLESLDLRTWER------GVGLTAACGSAACASVVASGCLHKTNRAVS----- 247
                    +   L+   R      G+      G+A                  +     
Sbjct: 203 GYYIFTLHDKET-LQVHGRMFAPAIGISEDPVTGNANGPLGAYLVHYKVIPIPNTEFIFE 261

Query: 248 ------VKMLGGGL-LIEWHDNNHVF--MTGEAKKEWEGKLDIK 282
                 +K  G  L  +   DN  V   + G+A   +   ++I+
Sbjct: 262 AVQGEAIKRKGKMLVKVIISDNKPVEVKIIGKAVIAFSTNIEIE 305


>gi|229069793|ref|ZP_04203076.1| Phenazine biosynthesis protein phzF [Bacillus cereus F65185]
 gi|228713328|gb|EEL65220.1| Phenazine biosynthesis protein phzF [Bacillus cereus F65185]
          Length = 285

 Score = 36.7 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 51  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIENKYPIQMVSTGLKDILIPIKSETQLHALQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                    + V V
Sbjct: 224 YLYEQDYLKKEVYV 237


>gi|330447702|ref|ZP_08311350.1| phenazine biosynthesis-like domain-containing protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491893|dbj|GAA05847.1| phenazine biosynthesis-like domain-containing protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 269

 Score = 36.7 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 26/232 (11%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSIS 117
           D  +R      +EV+ CG+G   V   L  R + KS     F+T+ G L A  N   +I 
Sbjct: 54  DMTLRWFTP-KAEVKLCGHGTLAVAHVLKERGQVKSGDSVNFKTLSGTLTALINES-TIE 111

Query: 118 VDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
           +D   P+++   IP ++   D +  +  ++        +    V                
Sbjct: 112 LDFPSPVIEC-DIPQSQELLDNLGLEESNVRFFGGFETKVFIEVD--------------S 156

Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSAACASV 233
              L +                L   +  S E   +  +     GV      GSA CA  
Sbjct: 157 EETLLNIQPNFEAMKQRKGRGVLVTTQSKSNEFDFISRYFAPWVGVNEDPVTGSAHCALT 216

Query: 234 VA-SGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283
           V  S  L K +         GG +  E   N    + G A    +G + +  
Sbjct: 217 VYWSEKLGKLDFKGYQASERGGHVATELLSNGRTKLIGAAVTVIKGVMQVSA 268


>gi|228908030|ref|ZP_04071879.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL
           200]
 gi|228851627|gb|EEM96432.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL
           200]
          Length = 285

 Score = 36.7 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 51  SESEIADYKFEYFTP-KEEVDLCGHATIGSFTILMHLNKIFKNRYTIETNSGVLAITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDIKDIDNNYPIQIVSTGLKDILIPIKSETQLHTLQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 224 YLYEQHYLQKEVYV 237


>gi|170085727|ref|XP_001874087.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651639|gb|EDR15879.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 295

 Score = 36.7 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 65/247 (26%), Gaps = 23/247 (9%)

Query: 51  LIHDFQ-----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI 105
            I   Q     D +    IR    +G EV  CG+      + L S+  R S +       
Sbjct: 52  FIGPSQLSAENDTTAVYDIRYFAANGVEVSLCGHATLASAKVLFSQTGRASISVLQFHTP 111

Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165
                         +           L+    K               + N    S    
Sbjct: 112 SEGVVAAKKVDGGLVEIEFPTGTTTKLSEE-QKSRIIPLINKAFGREVVINYLGASGPPY 170

Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA-- 223
                +E D    +LA               +N      +S     +    R    T   
Sbjct: 171 EHALLIELD-EKENLAECKVDAEAFRDTGYIINTVTTASSSGNESFVS---RMFSPTMIP 226

Query: 224 -----ACGSAACASVVASGCLHKT--NRAVS---VKMLGGGLLIEWHD-NNHVFMTGEAK 272
                 CGSA C          +    +++    V + GG LL+ W +    + + GEA 
Sbjct: 227 GGEDPVCGSAHCVLTPYWYQKQRIASGKSIKAKQVSVRGGDLLLTWDEAAKSIKLVGEAI 286

Query: 273 KEWEGKL 279
               G L
Sbjct: 287 VIGVGHL 293


>gi|206971531|ref|ZP_03232481.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus
           AH1134]
 gi|206733516|gb|EDZ50688.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus
           AH1134]
          Length = 285

 Score = 36.3 bits (82), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 51  SESELADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIDNKYPIQIVSTGLKDILIPIKSETQLHALQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                    + V V
Sbjct: 224 YLYEQDYLKKEVYV 237


>gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977]
 gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family
           protein?) [Mycobacterium abscessus]
          Length = 226

 Score = 36.3 bits (82), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA-KKEWEGK 278
            +++A  S   A++ A+    + +  V+V + GG   +    +  V +TG A     EG 
Sbjct: 140 AVSSANVSGRPAALTAAEARGQLDDKVAVYLDGGQAELG-AASTIVDLTGPAPVIVREGP 198

Query: 279 L 279
           +
Sbjct: 199 I 199


>gi|303325526|ref|ZP_07355969.1| PE-PGRS family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863442|gb|EFL86373.1| PE-PGRS family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 287

 Score = 36.3 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMT---GEAKKEWE 276
           L ++CGS A A  ++        R  S+   GG  L +   +     +    G       
Sbjct: 219 LESSCGSGALALALSLSRAGG-RRDFSIMQPGGSALDVRLFNEGEERLAAVDGPVSLVAR 277

Query: 277 GKL 279
           G++
Sbjct: 278 GQV 280


>gi|221115133|ref|XP_002160657.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 663

 Score = 36.3 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 53/218 (24%), Gaps = 10/218 (4%)

Query: 17  KILVIDMRGCHDNITSDAINALSTDDNTHFDQ------IMLIHDFQDASVDAFIRIINCD 70
             + ++     +   +D       D+    D       + +++       DA I     +
Sbjct: 329 DFICLNFIDLPEGYDTDETRKFIRDNILGKDNRELAANVEVMNFLAKVGPDALINTFTVN 388

Query: 71  ---GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127
               SE   C      +   L         + +   G +        S  +   E  +  
Sbjct: 389 IKGNSETHLCNQLQDIIFSELNGMKLFTFISLKGSLGDVPTHHCFIVSGKMLDDENKIFL 448

Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY-HYDLASFGNL 186
             IP              +  VN             +   +   + ++     L      
Sbjct: 449 DYIPTFADKSHQYNVVLTMKAVNETEKIKFIESCNTDSTYVCKTKYEMTIMDFLRKTSKH 508

Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224
                ++  G + +      L   ++  +E      +A
Sbjct: 509 GITMELYKYGADGTALCAVDLTVDEVFRYEHLENPKSA 546


>gi|218897234|ref|YP_002445645.1| phenazine biosynthesis protein PhzF [Bacillus cereus G9842]
 gi|218544634|gb|ACK97028.1| phenazine biosynthesis protein PhzF [Bacillus cereus G9842]
          Length = 287

 Score = 36.3 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKIFKNRYTIETNSGVLTITITD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 226 YLYEQHYLQKEVYV 239


>gi|228920978|ref|ZP_04084315.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838672|gb|EEM83976.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 285

 Score = 36.3 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 51  SESELADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFTDCFDSKNIENKYPIQIVSTGLKDILIPIKSETQLHALQ 169

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223

Query: 235 ASGCLHKTNRAVSV 248
                    + V V
Sbjct: 224 YLYEQDYLKKEVYV 237


>gi|75761107|ref|ZP_00741102.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228900856|ref|ZP_04065071.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL
           4222]
 gi|74491399|gb|EAO54620.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228858782|gb|EEN03227.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL
           4222]
          Length = 287

 Score = 36.3 bits (82), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%)

Query: 55  FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114
            +    D           EV  CG+        L    K     +       V       
Sbjct: 53  SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKIFKNRYTIETNSGVLTITITD 111

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            I        + + ++      D  D           +       + +            
Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHALQ 171

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
                +           M     N +     +   L        +   AA G++  A   
Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225

Query: 235 ASGCLHKTNRAVSV 248
                H   + V V
Sbjct: 226 YLYEQHYLQKEVYV 239


>gi|326671568|ref|XP_001920779.3| PREDICTED: receptor-type tyrosine-protein phosphatase gamma [Danio
            rerio]
          Length = 1443

 Score = 36.3 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 10/191 (5%)

Query: 16   NKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75
            N+ ++   +    + T D    +   +     QI+++        +           E  
Sbjct: 1216 NEFII--TQHPLPHTTKDFWRMIWDHNA----QIIVMLPDNQGLAEDEFVYW-PSREEAM 1268

Query: 76   SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135
            +C       +                   IL A ++           P       P++ +
Sbjct: 1269 NC-EAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISST 1327

Query: 136  FDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193
            F+ ++  +      +   +       VS G   A+  +   L     A    +     + 
Sbjct: 1328 FELINVIKEEAMTRDGPTIVHDEFGAVSAGMFCALTTLSQQLESEGAAGVYQVAKMINLM 1387

Query: 194  SEGVNLSIARV 204
              GV   I + 
Sbjct: 1388 RPGVFTDIEQY 1398


>gi|239980197|ref|ZP_04702721.1| putative long chain fatty acid:CoA ligase [Streptomyces albus
           J1074]
 gi|291452051|ref|ZP_06591441.1| acyl-CoA synthetase [Streptomyces albus J1074]
 gi|291355000|gb|EFE81902.1| acyl-CoA synthetase [Streptomyces albus J1074]
          Length = 650

 Score = 36.3 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292
           + GG + I   D+  V + G     + G  D ++G+  +   D
Sbjct: 452 LPGGRVKI--ADDGEVLLGGG--HVFSGYWDAESGEITRGPVD 490


>gi|294655575|ref|XP_457731.2| DEHA2C01166p [Debaryomyces hansenii CBS767]
 gi|199430435|emb|CAG85759.2| DEHA2C01166p [Debaryomyces hansenii]
          Length = 297

 Score = 36.3 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 65/205 (31%), Gaps = 13/205 (6%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVA 108
            +    +   D  +RI     +E+   G      C     +  ++ KS       G  + 
Sbjct: 51  FVLKTTNKDADYKLRIFTP-KNELPFAGHPTIGSCFALIESGLIQPKSGKLIQECGAGLV 109

Query: 109 KENRDGSISVD------MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162
           + +  G +S+          P      I  +   +     +   G  +   + +P ++ +
Sbjct: 110 EISVGGDVSIPKNLILSFRLPYFHITPIDTSVHLELESALKISSGFCSK--IASPVLLDV 167

Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--GVG 220
           G       + + +   +L      +A+   F     + +       + + R++    GV 
Sbjct: 168 GPKWLTIQLVEGIDVINLEPNYTEIARLSNFYGWTGIEVFGKHEDGTYESRSFAPVIGVN 227

Query: 221 LTAACGSAACASVVASGCLHKTNRA 245
              ACGS A A  V    +   +  
Sbjct: 228 EDPACGSGAGALGVYLSSISAKDTK 252


>gi|328876777|gb|EGG25140.1| ubiquitin ligase E3 alpha [Dictyostelium fasciculatum]
          Length = 1884

 Score = 36.3 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 8/122 (6%)

Query: 176  YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
                +                 +   A     +  DL   +R   +   CGS  CAS + 
Sbjct: 1723 ELSTIQREDIEYFHIIPLPNNYDDIFACNIKCKRCDLVPSKRDQVVCLLCGSMVCASAMC 1782

Query: 236  SGCLHKTNRAVSVKML--GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293
                +     V+      GG + +     + + +T      ++G +      ++  + ++
Sbjct: 1783 CREQNG-EGEVTTHSRKCGGDIGVYVLVEHSIVLT-----FFDGCIGFIGSSYLDAHGEE 1836

Query: 294  EA 295
            +A
Sbjct: 1837 DA 1838


>gi|296110862|ref|YP_003621243.1| putative epimerase [Leuconostoc kimchii IMSNU 11154]
 gi|295832393|gb|ADG40274.1| putative epimerase [Leuconostoc kimchii IMSNU 11154]
          Length = 299

 Score = 36.3 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 67/253 (26%), Gaps = 25/253 (9%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVA 108
            I   +  + D  +R       EV  CG+                S T   ET  GIL  
Sbjct: 50  FICKSEKYNADMRVRFFTPTT-EVPICGHATIGAQYAYAVEHDLDSQTIQQETQIGILPV 108

Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
           +  ++      +          PL  ++         +   N L    P  ++      +
Sbjct: 109 EIIKEEDDYKIIMTQGEVSVEEPLKEAYVVSILKALKLN-KNDLIPEAPIAIASTGHSKV 167

Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLT 222
                     +       L K        N       +L +  L    R      G+   
Sbjct: 168 MIGISSNNTLNHLQPNFELLKEISKEINCNGFHVFTVNLGNDPL-IHGRVFAPISGINED 226

Query: 223 AACGSAACASVVASGCLHKT---NRAVSVK-MLG------GGLLIEWH-DNN---HVFMT 268
              G+A           +       ++    + G      G + +    +N     V +T
Sbjct: 227 PVTGNANGPLGAYLVKYNLVTTNGSSLEFNAVQGEAMNRTGKMGVHVDIENGAPVKVQIT 286

Query: 269 GEAKKEWEGKLDI 281
           G A   +  K+++
Sbjct: 287 GTANIAFRTKIEL 299


>gi|75908714|ref|YP_323010.1| Rieske (2Fe-2S) protein [Anabaena variabilis ATCC 29413]
 gi|75702439|gb|ABA22115.1| Rieske (2Fe-2S) region [Anabaena variabilis ATCC 29413]
          Length = 359

 Score = 35.9 bits (81), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 49/199 (24%), Gaps = 8/199 (4%)

Query: 60  VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119
            DA+   +     E    GN +RC                  +   L  K     ++   
Sbjct: 64  CDAYCPHMGAHLGEGTVEGNELRCAFHHWKFNADGICVEIPCLDEPLSLKLKTWPTVEKY 123

Query: 120 MGEPILDWKL----IPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVE 172
               I   ++    +P     +  D +           H  L     +       +  ++
Sbjct: 124 GIIWIWTGEIPRESVPFVPELEFQDYEAVLGSSFVINCHPHLIMLNAIDTQYFQGVQVLD 183

Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLS-IARVTSLESLDLRTWERGVGLTAACGSAACA 231
                 +L     + +K+      +    + R      +    +  G  +T   G+    
Sbjct: 184 IGFEKQELNQNAIIFSKYKRQYHDLPFKKVFRPLYKNPIYSICYWYGSTVTLTVGTDLRR 243

Query: 232 SVVASGCLHKTNRAVSVKM 250
             +           V V+ 
Sbjct: 244 CYLMLALRLIAGEQVEVQT 262


>gi|260683600|ref|YP_003214885.1| hypothetical protein CD196_1864 [Clostridium difficile CD196]
 gi|260687260|ref|YP_003218394.1| hypothetical protein CDR20291_1907 [Clostridium difficile R20291]
 gi|260209763|emb|CBA63561.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213277|emb|CBE04817.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 251

 Score = 35.9 bits (81), Expect = 7.2,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 62/248 (25%), Gaps = 27/248 (10%)

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
            + D  IR      +EV  CG+             +  + T     G  +   +      
Sbjct: 7   ENYDVHIRFFTP-TNEVPICGHATIAAHYVRAVENQFNNKTVFQKTGAGILPVDIIKK-- 63

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVEDD 174
            +  E I+    I ++    +  + R           +    P  +S      +     +
Sbjct: 64  DNDYEIIMTQGKIEVSPPLQQTYQKRLLNAFGILNEDIRTDCPIAISSTGHSKVMIGIKE 123

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGSA 228
           L   +  S               N             L+   R      G+      G+A
Sbjct: 124 LSTLNSLSPNLYELSKISQEIKCNGYYIFTL-HNKETLQVHGRMFAPAIGISEDPVTGNA 182

Query: 229 ACASVVASGCLHKTNRAVS-----------VKMLGGGL-LIEWHDNNHVF--MTGEAKKE 274
                             +           +K  G  L  +   DN  V   + G+A   
Sbjct: 183 NGPLGAYLVHYKVIPIPNTEFIFEAVQGEAIKRKGKMLVKVIISDNKPVEVKIIGKAVIA 242

Query: 275 WEGKLDIK 282
           +   ++I+
Sbjct: 243 FSTNIEIE 250


>gi|317486579|ref|ZP_07945400.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6]
 gi|316922179|gb|EFV43444.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6]
          Length = 291

 Score = 35.9 bits (81), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 213 RTWERGVGLTAA---CGSAACASVVASGCLHKTNRAVSVKMLGGG-LLI-----EWHDNN 263
             W RG G T A   CGS   A+ +    ++     +S+   GG  L +      +    
Sbjct: 197 FVWVRGTGTTYAETACGSGTLAASIVCQGVYGDGGELSLMQPGGEPLRVVPDGAAYPGGW 256

Query: 264 HVFMTGEAKKEWEGKLDIK 282
             ++ G  ++   G + ++
Sbjct: 257 AAWVGGPVRRIARGDVFVE 275


>gi|229170539|ref|ZP_04298187.1| Uncharacterized isomerase [Bacillus cereus AH621]
 gi|228612888|gb|EEK70065.1| Uncharacterized isomerase [Bacillus cereus AH621]
          Length = 306

 Score = 35.9 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 57/249 (22%), Gaps = 26/249 (10%)

Query: 51  LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110
            I    ++  D  IR       EV  CG+                +       G  +   
Sbjct: 55  FIFKSDNSESDVHIRFFTP-THEVPICGHATIAAHYARAVENSLNTVKVYHKTGAGILPV 113

Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHA 167
           +       +  + I+    I      + +  +          N L    P  +       
Sbjct: 114 DVINE--DNDYKIIMTQGSISFETVIEGVALENIFTAFNISENDLLEDCPVQIVSTGHSK 171

Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGL 221
           +     +    +  +    L          N       +    D+    R      G+  
Sbjct: 172 VMIGIKNSELLNQLNPNMDLLIKVSGLINCNGFYVFTMNAPDSDILIHGRMFAPAIGINE 231

Query: 222 TAACGSAACASVVASGCLHKTNRAVSVK----MLG------GGLLIEWH----DNNHVFM 267
               G+A                  ++     + G      G + ++      +   V +
Sbjct: 232 DPVTGNANGPLGAYLIHHRLVKHDNTLFSFKAVQGEAIKRAGIIDVQVKICNQEPEEVRI 291

Query: 268 TGEAKKEWE 276
            G A   ++
Sbjct: 292 AGNAVIVFK 300


>gi|82915046|ref|XP_728951.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485651|gb|EAA20516.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 3195

 Score = 35.9 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 49/180 (27%), Gaps = 8/180 (4%)

Query: 54   DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113
            + +    + F    + + + V  C +   C++             F +           +
Sbjct: 2256 NPKKIGTNCFNYNHDNNNNNVCQCVSSN-CMLEENKVCNGHFDNNFCSSCDNRNYYGIEN 2314

Query: 114  GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173
                 +   P  + K+I   R+        F+    N    +NP  V   +    F  + 
Sbjct: 2315 NLYYDEEYIPQENGKIIKTPRNPCNNKDQHFNNSVYN----QNPHNVDNTSNCRCFREQA 2370

Query: 174  DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---LDLRTWERGVGLTAACGSAAC 230
                 D         K    +   +    +     +    + + +E+       C + AC
Sbjct: 2371 QYSENDNNENFMKNGKMKYNNFNNDKCDIKNIHDNNKINNEQKFYEQNNSFQQKCSTCAC 2430


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.126    0.377 

Lambda     K      H
   0.267   0.0387    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,045,204,186
Number of Sequences: 14124377
Number of extensions: 86963082
Number of successful extensions: 235083
Number of sequences better than 10.0: 2278
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 225733
Number of HSP's gapped (non-prelim): 2352
length of query: 296
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 158
effective length of database: 2,893,629,604
effective search space: 457193477432
effective search space used: 457193477432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 80 (35.5 bits)