BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] gi|254040387|gb|ACT57183.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 296/296 (100%), Positives = 296/296 (100%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV Sbjct: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM Sbjct: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL Sbjct: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH Sbjct: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY Sbjct: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 >gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1] gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32] gi|166225757|sp|A4YBF7|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225759|sp|A1RPD2|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1] gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32] gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200] Length = 275 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ LIP + SMGNPH + VE D+ +A Sbjct: 121 VPILEPSLIPFKAK-----KPEKTYLLQTAQQTFLCGAASMGNPHCVLDVE-DVASAAVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A+ ++G++ + Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424] gi|229807504|sp|B2AGE5|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424] Length = 288 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 137/285 (48%), Gaps = 7/285 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T AL+ DQI+++ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI+N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VDMG Sbjct: 63 RIVNADGSEVEHCGNGARCFVRFVTEQGMTDKRSVRVEVMNGVITLTLQDDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L+ +P + G + VSMGNPHA+ V+ D+ ++ + Sbjct: 123 PELEPARVPFRAQGLPTHAEGADALYGLEVNGRTEWISAVSMGNPHAVQVVD-DVENFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ HP F VN +V ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284 + V V GG L I W V MTG A +EG +D+ Sbjct: 242 LLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDLAAL 286 >gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] gi|123535219|sp|Q2SQ64|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] Length = 276 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + + L+ FDQ++++ D Sbjct: 2 LIKFTKMHGLGNDFMVVDLISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ +K+ ET +GI+ N+DG ++VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKENRLTNKKNIRVETKKGIIELIVNKDGLVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + G + + VSMGNPH + V+ D+ + Sbjct: 122 APRLAPADIPFVAETQEAIYPIEVNGVMYEI-----SAVSMGNPHGVLVVD-DVNKAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP F E N+ +V LR +ERG G T ACG+ ACA+VVA Sbjct: 176 KLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAAVVAGRLRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V +K+ GG L I W H V MTG A + ++G++ I Sbjct: 236 LDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQVRI 276 >gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015] gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015] Length = 281 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 138/282 (48%), Gaps = 12/282 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +VID ++ D + ++ DQ++L+ + S D RI Sbjct: 5 FSKMHGLGNDFVVIDAIRQQVELSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRYRI 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSEV+ CGNG RC RF+ + S ET+ G + + + VDMG Sbjct: 65 YNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDMGV 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D +P + H L + VSMGNPHA+ +V+ ++ +A Sbjct: 125 PRFDPSALPFEADAEAA-----HYALDTAGQLLDIGAVSMGNPHAVLWVD-EIQEAPVAE 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN A+ S + LR +ERG G T ACG+ ACA+V K Sbjct: 179 LGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAVAVGIRQGKL 238 Query: 243 NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKT 283 +R V+V + GG L I W D+ + MTG+A +EG +D+ + Sbjct: 239 DREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLSS 280 >gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4] gi|166225756|sp|A3Q9P7|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4] Length = 279 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 95/279 (34%), Positives = 141/279 (50%), Gaps = 6/279 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ S+ + ++ T G + + RDGS++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+L+ IP + VSMGNPH + V+ D+ + D+ Sbjct: 121 IPVLEPSRIPFNAKK-AEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVD-DVANADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+LL KH F +GVN+ +V + LR +ERG T ACGS ACA+V K Sbjct: 179 RIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGK 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 R V V + GG L I W ++MTG A+ ++G++ Sbjct: 239 LARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277 >gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 276 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMILKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP+ ++ +I L SMGNPH + V+ ++ D+ + Sbjct: 123 PIFEPNKIPMKAK----QAEKTYILRAGDQTLFCG-AASMGNPHCVTVVD-NVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRLQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I W +FMTG A ++G+ ++ Sbjct: 237 DENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276 >gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010] gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010] Length = 281 Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 142/279 (50%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +VID +TS I LS DQ++L+ Q A D Sbjct: 1 MLKFSKMHGLGNDFVVIDAIEQTVELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + T ET G++ DGS++VDMG Sbjct: 61 YRIFNADGGEVAQCGNGARCFARFVRDKGLTTKDTIAVETASGLIYPTLQADGSVTVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +PI + IP ++ ++ + +SMGNPHA+ V+ D+ + Sbjct: 121 KPIFEPAKIPFQAE-----EATTYMLTIDEHGKKEIAALSMGNPHAVMLVD-DVTVASVL 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F E VN ++ +S+ LR +ERG G T+ACG+ ACA+VV+ Sbjct: 175 ELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAAVVSGIKRGL 234 Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 N V+V + GG L I W + V+MTG A+ ++G++ Sbjct: 235 LNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273 >gi|288957726|ref|YP_003448067.1| diaminopimelate epimerase [Azospirillum sp. B510] gi|288910034|dbj|BAI71523.1| diaminopimelate epimerase [Azospirillum sp. B510] Length = 283 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 103/284 (36%), Positives = 149/284 (52%), Gaps = 9/284 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 +F KM G+GN +VID R ++ + A++ DQ +++ DAF+R Sbjct: 4 EFLKMHGLGNDFVVIDARSEPYRPSAAEVRAIADRRIGVGCDQFIVLERTDAPGADAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG E +CGN RCV L R +F+T G+L A +G I+VDMG P L Sbjct: 64 IRNADGGEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHASRADNGRITVDMGPPRL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA D + + G P V+MGNPHA+FFV+ D L G Sbjct: 124 DWAAIPLAAPADTLRVETVAHGGF-----AAPVAVNMGNPHAVFFVD-DAEAVPLDEVGP 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP F E N+ A+V S ++ +R WERG G+T ACGS +CA++VA+ T+R Sbjct: 178 VFENHPAFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRK 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTGKWI 287 + + GG L IEW + + V MTG + G+L ++ +G+ + Sbjct: 238 ADIILDGGTLTIEWTEEDRVLMTGPVALAFSGRLSAELVSGELV 281 >gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [marine bacterium HP15] Length = 304 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 10/282 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + I L+ FDQ++++ VD Sbjct: 11 MLRFTKMHGLGNDFMVVDAISQPFRLRPEMIRELANRNFGIGFDQLLVVEPPGLPDVDFR 70 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF +K +T +G++ + R+G + V+MG Sbjct: 71 YRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGREGMVMVNMG 130 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP A DR + +SMGNPH + VE D+ + Sbjct: 131 VPEFNPPAIPFAA-----DRRKDVYTVDVDGQTVELSALSMGNPHGVLLVE-DVDQAPVE 184 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L +HP F N+ ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 185 TLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSGACAAVVAGCLRGL 244 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 + V V++ GG L+IEW V M G A +EG+L + Sbjct: 245 LDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRLP 286 >gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16] gi|123134519|sp|Q0KF42|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16] Length = 288 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 137/285 (48%), Gaps = 7/285 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T AL+ DQI+++ VD Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI+N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VDMG Sbjct: 63 RIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L+ +P + G + VVSMGNPHA+ V+ D+ ++ + Sbjct: 123 PELEPARVPFRAEGLPTRAEGADTLYGLEVNGRTEWISVVSMGNPHAVQVVD-DVENFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ H F VN +V ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284 + V V GG L I W V MTG A +EG +D+ Sbjct: 242 LLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDLAAL 286 >gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107] gi|229807488|sp|B3PEI8|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107] Length = 276 Score = 250 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID +T + I L+ DQ++L+ + +VD Sbjct: 3 IRFSKMHGLGNDFVVIDGISQTVRLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDGSEV++CGNG RC F+ R ++ ET GI+ + D +SVDMG Sbjct: 63 RIFNCDGSEVENCGNGARCFAVFVRERRLTGKRVIRVETAGGIIELRVQDDEQVSVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L + IP D+ + + VSMGNPHA+ V+ D+ + Sbjct: 123 PRLLPEKIPFVA-----DQQAVTYPLDVAGQVCSISAVSMGNPHAVMLVD-DVKSAPVGQ 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ HP F VN +V S + ++LR +ERG G T ACG+ ACA+VV Sbjct: 177 LGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTGRLRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L I W H V MTG A + G++ + Sbjct: 237 NDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276 >gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155] gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185] gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195] gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223] gi|304412535|ref|ZP_07394141.1| diaminopimelate epimerase [Shewanella baltica OS183] gi|307307194|ref|ZP_07586932.1| diaminopimelate epimerase [Shewanella baltica BA175] gi|166225754|sp|A3D9Q0|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225755|sp|A6WTF5|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082840|sp|A9L5F5|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767120|sp|B8E690|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155] gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185] gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195] gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223] gi|304349177|gb|EFM13589.1| diaminopimelate epimerase [Shewanella baltica OS183] gi|306910433|gb|EFN40864.1| diaminopimelate epimerase [Shewanella baltica BA175] gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678] Length = 275 Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGTEVEQCGNGARCFARFVRNKGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ IP + + SMGNPH + VE D+ +A Sbjct: 121 VPILEPSQIPFKAK-----KPEKTYLLQTPMQTFLCGAASMGNPHCVLDVE-DVASASVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L KH F GVN+ +V + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I W ++MTG A+ ++G++ + Sbjct: 235 LGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002] gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Lutiella nitroferrum 2002] Length = 276 Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID H ++T + I L FDQ++L+ + D Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQHVDLTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + + ET +G++V + DG+++VDMG Sbjct: 63 RIFNSDGSEVEQCGNGARCFARFVAEQGLSAKVAIRVETAKGVIVPQLLADGTVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + + + VVSMGNPHA+ V D+ + +A Sbjct: 123 PRFKPVEIPFVAA-----EEALTYPLDAAGRQCDISVVSMGNPHAVQVV-ADVDTFPVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F E VN ++ S E + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 LGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVAGIRRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V GG L I W V MTG A + G++ + Sbjct: 237 DHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276 >gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893] gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893] Length = 327 Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 135/283 (47%), Gaps = 10/283 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+D + + I L+ FDQ++++ VD Sbjct: 17 MLNFTKMHGLGNDFMVVDAISQPFRLRPEMIRELADRNFGIGFDQLLVVEPPGLPDVDFR 76 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF +K +T +G++ + R G ++VDMG Sbjct: 77 YRIFNSDGSEVEQCGNGARCFARFVRDQRLTNKKVIRVQTAKGVIELRVGRAGMVTVDMG 136 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ IP A DR + VSMGNPH + V+ D+ + Sbjct: 137 VPELNPPAIPFAA-----DRRKDVYTVELGGDTVELSAVSMGNPHGVLLVD-DVDTAPVG 190 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +G L HP F N+ ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 191 EYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSGACAAVVAGCLRGL 250 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283 + V V++ GG L+IEW V M G +EG+L + Sbjct: 251 LDNRVDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRLPA 293 >gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3] gi|166225758|sp|A0KS65|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3] Length = 275 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+LD IP + SMGNPH + VE D+ + ++A Sbjct: 121 VPVLDPSQIPFKAK-----KAEKTYLLQTPQQTFLCGAASMGNPHCVLDVE-DVANANVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A+ ++G++ + Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34] gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34] Length = 276 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGG 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP+ ++ +I L SMGNPH + V+ ++ D+ + Sbjct: 123 PIFEPSKIPMKAK----QAEKTYILRAGEQTLFCG-AASMGNPHCVTVVD-NVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVAIGRSQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG A ++G+ Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274 >gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4] gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7] gi|122944336|sp|Q0HQJ2|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123130815|sp|Q0HN95|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4] gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7] Length = 275 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+LD IP + SMGNPH + VE D+ + ++A Sbjct: 121 VPVLDPSQIPFKAK-----KAEKTYLLQTSQQTFLCGAASMGNPHCVLDVE-DVANANVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A+ ++G++ + Sbjct: 235 LDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40] gi|123396771|sp|Q21P78|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40] Length = 277 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 133/280 (47%), Gaps = 9/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN ++ID IT + L+ DQ++++ D Sbjct: 3 LRFTKMHGLGNDFVMIDAISQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV++CGNG RC F+ R + T ET G +V D ++VDMG Sbjct: 63 RIFNHDGSEVENCGNGARCFAVFVRQRGLTAKSVITVETAVGRMVLHVQEDDQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PIL IPLA G + VSMGNPHA++ V +D + + Sbjct: 123 PILSPADIPLAAPQQATSYTLPTQGAGDITIG----AVSMGNPHAVYCV-NDCKTAPVET 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN +V S ++LR +ERG G T ACG+ ACA+VVA Sbjct: 178 LGPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVAGRLQGLL 237 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++ V MTG A + G++ I Sbjct: 238 ENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQVKI 277 >gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8] gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8] Length = 308 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D + D I L+ FDQ++++ VD Sbjct: 12 LRFTKMHGLGNDFMVVDAISQPFRLAPDTIRELADRNFGIGFDQLLVVEPPGLPDVDFRY 71 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF ++ +T +G++ K RDG ++V+MG Sbjct: 72 RIFNADGSEVEQCGNGARCFARFVRDQRLTNKRVIRVQTAKGVIELKVGRDGLVAVNMGV 131 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IP A D+ + + +SMGNPH + V+ ++ + S Sbjct: 132 PELNPPAIPFAA-----DQRKDVYTVDVNGQTVELSAISMGNPHGVLVVD-NVDTAPVES 185 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L KHP F N+ +V LR +ERG G T ACGS ACA+VVA Sbjct: 186 LGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVAGCLRGLL 245 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 + V V++ GG L+IEW ++ V M G A +EG+L + Sbjct: 246 DSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRLP 286 >gi|24375790|ref|NP_719833.1| diaminopimelate epimerase [Shewanella oneidensis MR-1] gi|29839322|sp|Q8E9H5|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|24350738|gb|AAN57277.1|AE015863_6 diaminopimelate epimerase [Shewanella oneidensis MR-1] Length = 275 Score = 248 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIQFTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV++CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+L+ IP + SMGNPH + VE D+ + ++A Sbjct: 121 VPVLEPSQIPFKAK-----KAEKTYLLQTPQQTFLCGAASMGNPHCVLDVE-DVANANVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL KH F GVN+ +V + + LR +ERG T ACG+ ACA+VV K Sbjct: 175 EIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A+ ++G++ + Sbjct: 235 LDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275 >gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069] gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069] Length = 276 Score = 248 bits (632), Expect = 9e-64, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM+G+GN +V+D + I L+ FDQ++++ Q D Sbjct: 2 IMPFSKMQGLGNDFVVVDAISQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSE CGNG R V +++ + ++ T + A +G +++DMG Sbjct: 62 FRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRQLRLSTNTATMQATLEDNGLVTIDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L+ IPL + + VSMGNPH + V+ ++ + Sbjct: 122 KPRLEPAQIPL-----RFAEKQTLYSIDAGGISYKVGAVSMGNPHCVLKVD-NVEKAPVQ 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L++H F N ++ +++ LR +ERGVG T ACG+ ACA+VV + Sbjct: 176 TVGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVVARLQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 T+ V V + GG L I W VFM+G AK +EG+++I Sbjct: 236 TDDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQVEI 276 >gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9] gi|254767108|sp|C1D8Q0|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9] Length = 278 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 145/282 (51%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN V+D +T + I L FDQ++L+ QDA D Sbjct: 3 LKFTKMQGLGNDFAVLDGVRQTIRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFSY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC RF+ R+ ET RG++V + DG ++VDMG Sbjct: 63 RIFNCDGGEVEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + D + + G + VVSMGNPHA+ V+ D+ + + Sbjct: 123 PRFRPADIPFVAAEDAVIHELEVAG-----QILGVTVVSMGNPHAVQVVD-DVDTAPVTA 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG L+ H F VN ++ S ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 177 FGPLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAGIRRGLL 236 Query: 243 --NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V+ GG L I W + H V+MTG A +EG++ + Sbjct: 237 DADTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278 >gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301] gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017] Length = 275 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400] gi|123169125|sp|Q146W2|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400] Length = 287 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N+T + AL+ DQ++L+ A VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGT 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D + +P A + R+ R VVSMGNPHA+ V D+ + + Sbjct: 123 PVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVVG-DVEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + + M G A +EG++++ Sbjct: 242 LLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIELP 286 >gi|94499871|ref|ZP_01306407.1| diaminopimelate epimerase [Oceanobacter sp. RED65] gi|94428072|gb|EAT13046.1| diaminopimelate epimerase [Oceanobacter sp. RED65] Length = 278 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 6/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + LS FDQ++++ + VD Sbjct: 2 LLKFTKMHGLGNDFMVVDLVTQHFAFRPEFVRQLSDRQFGIGFDQLLIVEPPSNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ET GI+ +DG + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVHDVRLTAKNPIKVETSSGIIELNIEQDGDVVVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + ++ +R + + + + VSMGNPH + V+ D++ + Sbjct: 122 AARFSPSDLPF--NAEQAERYQVQVPLNDGNYTAEFGAVSMGNPHCVMVVD-DIHSELVN 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L H F + VN ++ + +DLR +ERG G T ACG+ ACA+V + Sbjct: 179 QLGPQLEGHEQFPKRVNAGFMQIKNRNEMDLRVYERGAGWTLACGTGACAAVAVAHKWGL 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W V M G + ++G+L + Sbjct: 239 VDDEVKVNLPGGALTIRWDGEGDVIMKGPVVRVFDGRLQV 278 >gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 274 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V K + D ++V+MGE Sbjct: 61 RIFNADGSEVGQCGNGARCFARFVRLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + H L VSMGNPH + V+ D+ + + Sbjct: 121 PIFEPSKIPFKA---VKAEKTYIMRAAEHTILCG--AVSMGNPHCVLQVD-DVETALVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 IGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W +N +FMTG A ++G + + Sbjct: 235 DENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDGFIHL 274 >gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989] gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989] Length = 282 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 144/288 (50%), Gaps = 13/288 (4%) Query: 1 MQSSM---VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ 56 M + M + F KM G+GN +V D ++T + I ++ DQ++++ Q Sbjct: 1 MAARMTTRLRFTKMHGLGNDFVVFDGINQDIDLTPERIRKIADRRFGIGCDQLLVVEVPQ 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114 D RI N DGSEV++CGNG RC +F+ + + + ET+ G+L +R G Sbjct: 61 HPENDFRYRIYNYDGSEVENCGNGARCFAKFVRDKKLTGKNTIRVETLGGVLTLHASRQG 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P+L IP ++ D + +SMGNPHA+ V+ + Sbjct: 121 DVTVDMGVPVLTPAEIPFNADSQAVNYDLALAD-----QTISISAISMGNPHAVTLVD-N 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + +G L+ H F VN V S ES+ LR +ERGVG T ACG+ ACA+VV Sbjct: 175 VDTAPIEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACAAVV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 A + V+ + GG L IEW H V MTG A ++G++ I Sbjct: 235 AGHLQGLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQVKI 282 >gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK] gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK] Length = 276 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 132/278 (47%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFMVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + + VVSMGNPH + V+ DL + + Sbjct: 123 PEFEPSKIPF-----RAKQTEKTYIMRVGERTIFCGVVSMGNPHCVTVVD-DLDLTGVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E VN +V S + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V V + GG L I W + ++MTG ++G++ Sbjct: 237 DENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274 >gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886] gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886] Length = 276 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ + FDQ++++ D D Sbjct: 3 IQFSKMHGLGNDFMVVDCVTQNAYFSPDMIRRLADRNTGVGFDQLLVVEPPYDPESDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N D SEV CGNG RC RF+ + + T G +V K + D ++V+MGE Sbjct: 63 RIFNADSSEVAQCGNGARCFARFVRMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI IP + + + VSMGNPH + V+ ++ +D+ Sbjct: 123 PIWAPAKIPF-----RANAEEKTYILRVEDTTLFVGAVSMGNPHCVTVVD-NVDTFDVEG 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E VN ++ S + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + +V+V + GG L I W H ++MTG A ++G++ + Sbjct: 237 DESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQITV 276 >gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134] gi|123626043|sp|Q476V3|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134] Length = 288 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 137/285 (48%), Gaps = 7/285 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T++ AL+ DQ++++ VD Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQKLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC VRF+T + ++S E + G++ DG ++VDMG Sbjct: 63 RIFNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVMNGVITLTLQDDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDR--DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L+ +P + + G + VSMGNPHA+ V+ D+ ++ + Sbjct: 123 PELEPARVPFRPDGLPVRTQGEDIAYGLEINGRTAWISPVSMGNPHAVQVVD-DVENFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284 + V V GG L I W V MTG A +EG +D+ Sbjct: 242 LLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDLAAL 286 >gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863] Length = 275 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2] gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2] Length = 275 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTATVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275 >gi|296161402|ref|ZP_06844209.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1] gi|295888388|gb|EFG68199.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1] Length = 295 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N+T + AL+ DQ++L+ A VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTVTLTMQENGEVLVDMGT 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D + +P A + R+ R VSMGNPHA+ V+ D+ + + Sbjct: 123 PVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVVD-DVEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + + V V GG L I W + + M G A +EG++++ Sbjct: 242 RLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIELP 286 >gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T] gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T] Length = 277 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 130/281 (46%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++T + A++ DQ++++ VD Sbjct: 3 LRFTKMHGLGNDFVVIDATRAPVDLTPARVKAIADRHFGVGCDQLLVVEPAARPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ET GI+ + DG ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDKGLTDKAEIRVETRSGIIAPRLRADGLVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L +P D + + G + VSMGNPHA+ V D+ + Sbjct: 123 PELAPAKVPFVSDSDAVVQPLQVGGDTVAI-----TAVSMGNPHAVQVV-ADVDAAPVVE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +H F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 QGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAGILRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 V V GG L I W V MTG A +EG++++ Sbjct: 237 ETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMELA 277 >gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72] gi|166224239|sp|A1K306|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72] Length = 277 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 131/281 (46%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++T + A++ DQ++++ VD Sbjct: 3 IRFTKMHGLGNDFVVIDATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET G++ DG +SVDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDKGLTDKREIRVETRAGVIAPALRPDGLVSVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IP D + + VSMGNPHA+ V D+ +A Sbjct: 123 PELSPARIPFVSDSDAWVQPLQLAEDTVAI-----TAVSMGNPHAVQVV-ADVDTAPVAR 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 QGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVAGIGRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 V V+ GG L I W V MTG A +EG+L++ Sbjct: 237 VSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELELP 277 >gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206] gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3] gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206] Length = 275 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + + + L VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89] gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1] gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638] gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11] gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA] gi|254039021|ref|ZP_04873072.1| diaminopimelate epimerase [Escherichia sp. 1_1_43] gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185] gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1] gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7] gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1] gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1] gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1] gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1] gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1] gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1] gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1] gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1] gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1] gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1] gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1] gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1] gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1] gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1] gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7] gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736] gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605] gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718] gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143] gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271] gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280] gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591] gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299] gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9] gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933] gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai] gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046] gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197] gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227] gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89] gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1] gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638] gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli] gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli] gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11] gi|226838712|gb|EEH70740.1| diaminopimelate epimerase [Escherichia sp. 1_1_43] gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA] gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15] gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185] gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1] gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1] gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1] gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1] gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1] gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1] gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1] gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1] gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1] gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1] gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1] gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7] gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1] gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1] gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1] gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1] gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7] gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1] gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3] gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101] gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520] gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482] gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120] gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263] gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489] gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007] gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509] gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2] gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1] gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3] gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253] gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167] gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227] gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736] gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605] gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718] gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143] gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271] gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280] gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591] gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299] gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9] Length = 275 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] Length = 275 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972] gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1] gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1] gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073] gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972] gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1] gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1] gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1] Length = 275 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + + + L VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345] gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345] Length = 278 Score = 245 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 S ++ F KM G+GN +V+D + + D I L+ FDQ++L+ D +D Sbjct: 2 SILIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG ++V+ Sbjct: 62 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L+ IP + + VSMGNPH + VE D+ D Sbjct: 122 MGIPALEPGKIPFTAK-----KVEKTYLLMASSGTYLCGAVSMGNPHCVIEVE-DVAATD 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G L H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 176 VDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVVVGILQ 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 K +R V V + GG L+I W ++MTG A+ ++G++ Sbjct: 236 GKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276 >gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325] gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325] Length = 279 Score = 245 bits (624), Expect = 8e-63, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 138/285 (48%), Gaps = 10/285 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M+ + F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 1 MKGQEMQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPD 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI N DGSEV CGNG RC RF+T + +K T T G ++ + + Sbjct: 61 QDFHYRIFNADGSEVAQCGNGARCFARFVTLKGLTDKKEITVSTQIGKMILNVLENEKVQ 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPI + IP ++ + + VVSMGNPH + V+ D+ Sbjct: 121 VNMGEPIWEPAKIPFVA-----NKFEKNYILRTDIQTVLCGVVSMGNPHCVVQVD-DIKT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 ANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVGI 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L IEW +FMTGEA ++G + + Sbjct: 235 MQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDGVIRL 279 >gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581] gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581] Length = 277 Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ + + I L+ FDQ++++ +D +D Sbjct: 2 LLQFTKMHGLGNDFMVVDLVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV++CGNG RC RF ++ ET G L DG +SVDMG Sbjct: 62 YRIYNADGSEVENCGNGARCFARFVLDQRLTHKREIHVETAGGPLTLVVGDDGRVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + +P D+ H V+ + S+GNPHA+ V+ D+ +A Sbjct: 122 KPRFAPQDLPFEADGDR----PLHDLEVDGQQISIGVA-SLGNPHAVLRVD-DVTTAPVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN +V S + LR +ERGVG T ACG+ ACA+V Sbjct: 176 TLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAAVACGIRQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I+W D ++ MTG A++ +EG++ I Sbjct: 236 LESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAI 276 >gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34] gi|166225747|sp|Q1LS37|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34] Length = 288 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 134/285 (47%), Gaps = 7/285 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T AL+ DQI+++ VD Sbjct: 3 LQFTKMHGAGNDFIVLDGIHQKLDLTDAQWRALANRHFGIGADQILIVEKSSRDDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDMGE 122 RI+N DG EV+ CGNG RC VRF+T R E + G++ K DG ++VDMGE Sbjct: 63 RIVNADGGEVEHCGNGARCFVRFVTDRGMTDKQSVRVEVMNGVITLKLQDDGQVTVDMGE 122 Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L +P + + G + VSMGNPHA+ V+ D+ + + Sbjct: 123 PELTPARVPFIADGLPTRAEAQDTLYGLEVNGRTEWISPVSMGNPHAVQIVD-DVEQFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ H F VN ++ ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 + V V GG L I W V MTG A +EG +D+ T Sbjct: 242 LLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLSTL 286 >gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9] gi|81614797|sp|Q6LLN5|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum SS9] Length = 276 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + AI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFMVVDCVTQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVWMKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP ++ +I V + VSMGNPH + V+ DL D+ + Sbjct: 123 PEFEPSKIPF----RAKQTEKTYIMRVGERTIFCGT-VSMGNPHCVTVVD-DLELTDVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E VN +V S + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACAAVAVGYLQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG ++G++ Sbjct: 237 DENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQI 274 >gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea sp. MED297] gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297] Length = 274 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 130/277 (46%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++++ I FDQ++L+ D Sbjct: 3 LKFTKMHGLGNDFMVIDGVTQAVELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV++CGNG RC RF ++ + ET G L + +G ++VDMG Sbjct: 63 RIFNADGSEVENCGNGARCFARFVLDNQLIQNTTIRVETAGGDLELRVEDNGEVTVDMGR 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D + +++GNPH + V+ D+ D+ Sbjct: 123 PRTRPDKIPFLA-----DDKAALYDINVLDETLSISAINVGNPHCVTRVD-DVLTADVER 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F + VN ++ ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 LGPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAVVAGVLNGWL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + VSV + GG L I W ++ MTG A + +EG + Sbjct: 237 DHTVSVTLPGGKLTIHWAGEGNILMTGPATRVYEGVI 273 >gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602] gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602] Length = 274 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + +P ++ +I + VVSMGNPH + V+ D+ ++ Sbjct: 121 PVFEPQQVPF----RAAKPEKTYILRAEERTVFCG-VVSMGNPHCVLQVD-DVLTAEVEV 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ ++ S ES+ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113] gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113] Length = 276 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +VID +T+ + ++ DQ++L+ ++D Sbjct: 3 IAFTKMQGLGNDFVVIDAFSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ R T +T GI+ + DG I+VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARFVRERKLTDKNTLRVQTAGGIIQLQLEPDGQITVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + G + VVS+GNPH + V + +A Sbjct: 123 PRFAPQQIPFKVDHEADYYSLELDGQQLEIG-----VVSLGNPHCVLRVPA-VDAAPVAH 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G LL HP F + VN+ A++ S L LR +ERG G T ACG+ ACA+VV Sbjct: 177 WGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIGKRRGWL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + V+M+G A+ +EG D+ Sbjct: 237 SGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276 >gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180] gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180] Length = 278 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 8/279 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +V D ++ + L+ DQI+L+ + D Sbjct: 3 LRFTKMQGLGNDFVVFDGVRQRVDLDAGFARLLADRRFGIGCDQILLVEPPRLPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + T G + DG + VDMG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVRDQGLTDKDEIPVGTAAGAIRLYLEPDGQVRVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + + D L + +SMGNPHA+ V+ D+ +A+ Sbjct: 123 PAFTPARIPFSVETETADATYPLEIEDRTLTIG---ALSMGNPHAVLIVD-DVESAPVAT 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ HP F VN ++ ++ LR ERG G T ACG+ ACA+VV+ + Sbjct: 179 LGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVVSGRRRGRL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + V V + GG L+IEW H V+MTG A +EG+++ Sbjct: 239 DERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEIE 277 >gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW] gi|254767118|sp|B6IP82|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW] Length = 291 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 109/277 (39%), Positives = 156/277 (56%), Gaps = 9/277 (3%) Query: 5 MVD-FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 MV F KM G+GN +V+D R +T+ A A++ DQI+L+ + + D Sbjct: 1 MVRRFLKMHGLGNDFVVLDARRDPLPLTTAAARAIADRHTGVGCDQIVLLEPPRHPAADL 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+RI+N DGSE +CGN RCV + R T ET G+L + DGS++VDMG Sbjct: 61 FMRILNPDGSESGACGNATRCVASLVADGSGRAEVTVETATGLLRCRLRADGSVTVDMGP 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 LDW IPLA + D + P L++ V MGNPHA+FFV+ D DLA+ Sbjct: 121 ARLDWTQIPLAAAHDTLRV------PAGAGPLQDACCVGMGNPHAVFFVD-DAEAVDLAT 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H +F + N+ +A+V + + + +R WERG G+T ACGS +CA++VA+ T Sbjct: 174 LGPVLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAARRGLT 233 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 RA +++ GG L IEWH + HV MTG + G+L Sbjct: 234 GRAAWIELDGGRLWIEWHGDGHVLMTGPVATAFTGEL 270 >gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913] gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913] Length = 276 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ + + + T G L +DG ++V+MG Sbjct: 62 YRIFNADGHEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IPL + VSMGNPH + V+ D+ ++ Sbjct: 122 HPNFEPSKIPLKATKR-----ELTYIIRAEEHTVFSGAVSMGNPHCVMEVD-DIETAQVS 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V +K Sbjct: 176 TLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAAMVIGFIQNK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L + W H V MTG A+ ++G++ + Sbjct: 236 LTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae NTUH-K2044] gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3] gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3] Length = 275 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 131/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275 >gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043] gi|122419111|sp|Q1QSV1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043] Length = 277 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 136/282 (48%), Gaps = 10/282 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ + ++ I L+ FDQ++L+ +D +D Sbjct: 2 LLHFTKMHGLGNDFVVIDLITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV++CGNG RC RF+ ++ ET G L + D I VDMG Sbjct: 62 YRIFNADGNEVENCGNGARCFARFVRDNRLTHKREIRVETQAGPLTLRVEDDERIRVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +++P D + VSMGNPHA+ V+ D+ +A Sbjct: 122 VPRFAPEVVPFDAPADAPA-----HCLEVDGETWDIGAVSMGNPHAVLRVD-DVAQAPVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ +HP F GVN+ +V S LR +ERG G T ACG+ ACA+V Sbjct: 176 RLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAAVAHGIRRGW 235 Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 V V + GG L + W + + MTG A +EG++ + Sbjct: 236 LESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIALP 277 >gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN] gi|229807509|sp|B2T1P5|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN] Length = 299 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N+T + AL+ DQ++L+ A VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ ++S + +G + +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGT 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D + +P A + + + R VVSMGNPHA+ V+ D+ + + Sbjct: 123 PVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + + M G A +EG++++ Sbjct: 242 LLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIELP 286 >gi|307823077|ref|ZP_07653307.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96] gi|307735852|gb|EFO06699.1| diaminopimelate epimerase [Methylobacter tundripaludum SV96] Length = 275 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +VID H ++T + I +S FDQ++LI +A+ D Sbjct: 1 MINFTKMHGLGNDFVVIDAINQHIDLTPEQIRLMSDRHFGIGFDQLLLIEKAVNANADFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + +T G L+ + + D I+V+MG Sbjct: 61 YRIFNADGGEVAQCGNGARCFARFVRDKKLSDKNEICVDTNSGQLLLRFDADNLITVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IPL + + + VSMGNPHA+ V D+ +A Sbjct: 121 IPRHAPAEIPLLAEEESRFYTVLV-----NETEKAFGAVSMGNPHAVIQV-TDVKTAPVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L H F E VN+ +V + + LR +ERG T ACGS ACA+VV + Sbjct: 175 ELGKALESHTFFPERVNVGFMQVVDRQHIKLRVYERGAAETLACGSGACAAVVIGIEHNL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VSV + GG L I W V MTG A +EG++ + Sbjct: 235 LDHTVSVDLPGGTLSINWLGRGEPVLMTGPAISVFEGQITL 275 >gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401] gi|161485855|ref|NP_709616.2| diaminopimelate epimerase [Shigella flexneri 2a str. 301] gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012] gi|122366275|sp|Q0SZ00|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401] gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012] gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T] gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74] gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70] gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671] gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71] gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71] gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6] gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218] gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227] gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304] Length = 274 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003] gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003] Length = 287 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 86/285 (30%), Positives = 138/285 (48%), Gaps = 9/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N++ + AL+ DQ++L+ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLSPAQVRALADRHFGVGADQLLLVEKPTVEGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ ++S + +G + +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + + +P A + R+ + R VVSMGNPHA+ V+ D+ + + Sbjct: 123 PVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W ++ + M G A ++G++++ Sbjct: 242 LLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIELA 286 >gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905] Length = 274 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7] gi|254767121|sp|B8GT89|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sp. HL-EbGR7] Length = 278 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 96/282 (34%), Positives = 139/282 (49%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH-DFQDASVDAF 63 + F+KM G+GN +VID +++ D + L+ DQ++L+ A+ D Sbjct: 3 IQFSKMHGLGNDFVVIDAIHQPVDLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC F+ R + ET GI+ + DG ++VDMG Sbjct: 63 YRIFNADGNEVEQCGNGARCFAVFVRERGLTAKDHIPVETAAGIIHLQVQPDGQVTVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP G + VSMGNPHA+ V+ ++ +A Sbjct: 123 PPRLKPWQIPFEAESAMTSYPLEVEGETYEIG-----AVSMGNPHAVLRVD-NVQTAPVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ HP F VN+ +V S + LR +ERGVG T ACG+ ACA+VV+ Sbjct: 177 RLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVSGRIQGL 236 Query: 242 TNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L+I W + V MTG A + + G +DI Sbjct: 237 LDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSIDI 278 >gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505] gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505] Length = 276 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ + + + T G L +DG ++V+MG Sbjct: 62 YRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IPL S VSMGNPH + V+ D+ + Sbjct: 122 HPNFEPSKIPLKASKR-----ELTYIIRTQEHTVFSGAVSMGNPHCVLEVD-DVTTAQVD 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V +K Sbjct: 176 ILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHMQNK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L + W H V MTG A+ ++G++ + Sbjct: 236 LSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82] Length = 274 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC F+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFACFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 DEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895] gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895] Length = 275 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ ++ + Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NIDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275 >gi|257453687|ref|ZP_05618974.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60] gi|257448921|gb|EEV23877.1| diaminopimelate epimerase [Enhydrobacter aerosaccus SK60] Length = 310 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 11/299 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ ++T + + L FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLHLTKELVALLGDRHLGIGFDQLLIVEPPSRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEVQ CGNG RC RF+ +R ++ ET GI+ + G + VDMG Sbjct: 62 YRIFNKDGSEVQQCGNGARCFARFVQARKLSFKQRIRVETASGIITLSTDDYGWVKVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP ++ + + +V +MGNPHA+ V+ D+ ++ Sbjct: 122 KPKFEPDEIPFTPKTITKVQNSYRLNVDGTPVTL--YVANMGNPHAVIKVD-DVLTAEVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 179 KLGKAIESHPAFPERVNVGFMQVMNNRHIRLRVYERGVGETQACGTGACAAVATGVREGW 238 Query: 242 TNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD---IKTGKWIKKNEDDEA 295 + V ++ + GG L I W + V+MTG A +EG + G +K + Sbjct: 239 LDEGVDIRAQLYGGSLAIRWQEGYPVYMTGPATFVYEGVFSPEGLMAGAGLKFAPAQSS 297 >gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M] gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M] Length = 300 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 10/289 (3%) Query: 3 SSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 S M + F KM G GN +V+D N+T + + AL+ DQ++L+ V Sbjct: 12 SVMKLKFTKMHGAGNDFVVLDGYTQALNLTPEQVRALADRHFGVGADQLLLVEKPTVDGV 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISV 118 D RI NCDG EV+ CGNG RC V+F+ ++S + G + +G + V Sbjct: 72 DFRYRIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQNGTITLTMQENGEVLV 131 Query: 119 DMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P+ + + +P A + R+ + R VVSMGNPHA+ V+ D+ Sbjct: 132 DMGSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVE 190 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 191 AFPVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAG 250 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W ++ + M G A ++G++++ Sbjct: 251 IRRGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIELA 299 >gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1] gi|122312761|sp|Q0ACL9|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1] Length = 279 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 12/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F KM+G+GN +VID + + I ++ DQ++L + + D Sbjct: 3 VRFTKMQGLGNDFVVIDAVRQPVEPSPEQIRHIADRRYGVGCDQVLLATPARRSQADFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 I N DGS+ + CGNG+RC+ RFL R R ETI G+ + DG ++VDM Sbjct: 63 LIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTVDM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+L+ IP + + G V L VSMGNPHA+ V+ D+ + Sbjct: 123 GAPVLEPPHIPFRAPSRAREYELEVEGQVVRLG-----AVSMGNPHAVLRVD-DVDSAPV 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + H F VN+ +V + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 177 ETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACAAVVSGRLRG 236 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 AV V + GG L+I W + HV+MTG A+ +EG++ + Sbjct: 237 WLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279 >gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7] gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7] Length = 276 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ + + + T G L +DG ++V+MG Sbjct: 62 YRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IPL S VSMGNPH + V+ D+ + Sbjct: 122 HPNFEPSKIPLKASKR-----ELTYIIRAEEHTVFSGAVSMGNPHCVIEVD-DITTAQVD 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V K Sbjct: 176 VLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQSK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + AV V + GG L I W H V MTG A+ ++G++ + Sbjct: 236 LSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276 >gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v] Length = 274 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101] gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101] Length = 274 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|163859105|ref|YP_001633403.1| diaminopimelate epimerase [Bordetella petrii DSM 12804] gi|163262833|emb|CAP45136.1| dapF [Bordetella petrii] Length = 304 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 140/294 (47%), Gaps = 14/294 (4%) Query: 5 MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 M+ +F KM G GN +V+D +IT + AL+ DQI+L+ D Sbjct: 7 MIWNFTKMHGAGNDFVVLDGVRQAIDITPERARALADRHFGIGADQILLVEPPTHPEADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + R E GILV E D ++VDM Sbjct: 67 RYRIFNADGSEVEHCGNGARCFVRFVHEQRLSSRNPLRAEIATGILVLDEGDDEQVTVDM 126 Query: 121 GEPILDWKLIPL--------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G D +P A+ D + + P V++ NPHA+ V+ Sbjct: 127 GVTRFDPAALPFDTAGLASAAQGSDTLWQLDLPDAPPGLPRSVQVSAVAISNPHAVQQVD 186 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +A+ G L+ +HP F+ VN +V S+ LR +ERG G T ACG+ ACA+ Sbjct: 187 -DVDAAPVAAIGPLIERHPRFARRVNAGFMQVLDRHSIRLRVYERGAGETLACGTGACAA 245 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 V A + V V GG L ++W+ H+ MTG A + G++DI + Sbjct: 246 VAAGIRRGLLDSPVRVHTRGGTLTVDWN-GEHLRMTGPATSVFTGQVDIDKLVF 298 >gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393] gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393] Length = 274 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPADTIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G +V D ++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMVLTVKEDDNVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+ D++ ++A Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTEIQTVLCGAVSMGNPHCVVQVD-DIHTANVAQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + + LR ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW H ++MTG A ++G + + Sbjct: 235 DNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDGVIYL 274 >gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1] gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1] Length = 276 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++ + I ++ DQ++L+ Q D Sbjct: 3 LKFTKMHGAGNDFVVLDGVRQSVALSPEQIRYIADRHFGIGCDQVLLVEKTQRDEADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET G++ + DG I+V+MG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDQNLTSKREIVVETKSGLISPRLEEDGRITVNMGL 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP D VVSMGNPHA+ V+ D+ +A+ Sbjct: 123 PIFDPAQIPFV-----SDSTEVIQPLQVGNESVQITVVSMGNPHAVQVVD-DVETAPVAT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN+ +V E + LR +ERG G T +CG+ ACA+VVA Sbjct: 177 QGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAAVVAGIRRKLL 236 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + + V MTG A +EG++++ Sbjct: 237 DNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276 >gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94] gi|229813249|sp|B2TUW5|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94] Length = 274 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ+++I D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVS+GNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSIGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 278 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 135/285 (47%), Gaps = 11/285 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M+ M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D Sbjct: 1 MEQ-MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPD 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+ + ++ T G +V D + Sbjct: 60 LDFHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP D +P + ++ VVSMGNPH + V+ D+ Sbjct: 120 VNMGEPNFDPSAVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVQT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 174 AAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 234 SQGLLAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDGFIHL 278 >gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J] gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA] gi|229813252|sp|B2UD25|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J] gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA] Length = 292 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 134/286 (46%), Gaps = 7/286 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 3 LHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 63 RIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P + D + VSMGNPHA+ V+ D + + Sbjct: 123 PVFEAARLPFLPEGLPTRTQGDDTQHALQINGRTEWLSTVSMGNPHAVQIVD-DTEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H +F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W + V MTG A +EG LD+ K Sbjct: 242 LLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDLDALK 287 >gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001] gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001] Length = 287 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N+T + AL+ DQ++L+ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVDGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ ++S + +G + +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGL 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + + +P A + R+ + R VVSMGNPHA+ V+ D+ + + Sbjct: 123 PVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVD-DVEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ +H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDN---NHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W N + M G A ++G++++ Sbjct: 242 LLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIELA 286 >gi|227357158|ref|ZP_03841527.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906] gi|227162690|gb|EEI47657.1| diaminopimelate epimerase [Proteus mirabilis ATCC 29906] Length = 274 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G + + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + I + L VVSMGNPH + VE D+ ++ S Sbjct: 121 PEFEPQKVPFRA---QKVEKTYIIRAMERTVLCG--VVSMGNPHCVIQVE-DIKTAEVES 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G++L +H F E N+ +V +L LR +ERG G T ACGS ACA+V Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V V + GG L IEW + ++MTG A ++G + + Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274 >gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae CIP 102761] Length = 276 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 141/278 (50%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + D + L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFMVVDAVTQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDDQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP + ++ +I + SMGNPH + V+ D+ D+ + Sbjct: 123 PIFDPAKIPFRAN----QAEKTYILRAGDQTVFCG-AASMGNPHCVTVVD-DVLTADVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN+ +V S + LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACAAVAIGRQQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + V+V + GG L I W+ N ++FMTG ++G++ Sbjct: 237 DEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQV 274 >gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 275 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ ++ + Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275 >gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220] gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220] Length = 274 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTATVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274 >gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187] gi|259595064|sp|C4LDU8|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187] Length = 276 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN +V+D ++ + L FDQ++L+ D +D Sbjct: 2 LIQFSKMHGLGNDFVVVDGVTQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121 RI N DGSEVQ CGNG RC RF+ + T+ G +V + + ++V+MG Sbjct: 62 YRIFNADGSEVQQCGNGARCFARFVRLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + ++ ++ V + VVSMGNPH + V + + Sbjct: 122 VPEFEPAKIPF----RALKAEKLYLLRVAEQTVMCG-VVSMGNPHCVIEV-PSVKDAPVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L F E +N+ V S ++LR +ERG G T ACG+ ACA+VV K Sbjct: 176 TLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAAVVVGIQQEK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W+ V+MTG A+ ++G++++ Sbjct: 236 LKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276 >gi|89110210|ref|AP_003990.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. W3110] gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536] gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A] gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS] gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 EDL933] gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197] gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227] gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046] gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai] gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486] gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869] gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508] gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739] gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. DH10B] gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5] gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196] gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113] gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076] gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401] gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501] gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A] gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11] gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22] gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019] gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171] gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1] gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024] gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206] gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045] gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042] gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115] gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588] gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469] gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1] gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88] gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989] gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39] gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026] gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952] gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606] gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359] gi|256021447|ref|ZP_05435312.1| diaminopimelate epimerase [Shigella sp. D9] gi|256026156|ref|ZP_05440021.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B] gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str. 12009] gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str. 11368] gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str. 11128] gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000] gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966] gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615] gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412] gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354] gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088] gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302] gi|307140508|ref|ZP_07499864.1| diaminopimelate epimerase [Escherichia coli H736] gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W] gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617] gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70] gi|62288069|sp|P0A6K1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|62288070|sp|P0A6K2|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123147484|sp|Q0TAR6|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012034|sp|A7ZU14|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012035|sp|A8A6R7|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082833|sp|B1IW95|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724208|sp|B7MH73|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724209|sp|B7NTD3|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724210|sp|B7M611|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724211|sp|B7NFB1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724212|sp|B1LLY0|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724213|sp|B7LU47|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807507|sp|B5YY56|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807508|sp|B1XAH6|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767104|sp|B7L969|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259595053|sp|C4ZZ73|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110] gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr. MG1655] gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536] gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS] gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A] gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739] gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr. DH10B] gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5] gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196] gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113] gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076] gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401] gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486] gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501] gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869] gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508] gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A] gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11] gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22] gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019] gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171] gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1] gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206] gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045] gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042] gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115] gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588] gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989] gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469] gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1] gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88] gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39] gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026] gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82] gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952] gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)] gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606] gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)] gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359] gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str. 11368] gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str. 12009] gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str. 11128] gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1] gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042] gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615] gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088] gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412] gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354] gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034] gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302] gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W] gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146] gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617] gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407] gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70] gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C] gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W] gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1] gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431] gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112] gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83] gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212] gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327] gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B] gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89] gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687] gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905] gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61] gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14] gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010] gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68] gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli 1180] gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1] gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11] gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252] gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125] gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044] gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86] gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74] gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88] Length = 274 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125] gi|123587542|sp|Q3IEW3|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125] Length = 276 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + ++ D I L+ FDQ++++ +D Sbjct: 2 LVNFSKMHGLGNDFVVIDNITQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ + + T T G L +DG ++V+MG Sbjct: 62 YRIFNADGTEVEQCGNGARCFARFVRMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IPL + VSMGNPH + V+ D+ + Sbjct: 122 HPNFEPSKIPLKATKR-----ELTYIIRTEEHTVFSGAVSMGNPHCVLEVD-DITTAQVD 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F + N+ +V S E + LR WERGV T ACG+ ACA++V +K Sbjct: 176 ILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAAMVIGFIQNK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W+ H V MTG A+ ++G++ + Sbjct: 236 LISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276 >gi|295675164|ref|YP_003603688.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002] gi|295435007|gb|ADG14177.1| diaminopimelate epimerase [Burkholderia sp. CCGE1002] Length = 370 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 142/299 (47%), Gaps = 10/299 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T+ + AL+ DQ++L+ VD Sbjct: 62 LKFTKMHGAGNDFVVLDGYTQPLDLTTAQVRALANRHFGVGADQLLLVEKPTVEGVDFRY 121 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDMG Sbjct: 122 RIFNCDGGEVEHCGNGARCFVKFVRERGLTDQRSVRVQVQKGTITLTMQDNGEVIVDMGT 181 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D +L+P A + R+ + R VVSMGNPHA+ V+ D + + Sbjct: 182 PVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVVD-DAEAFPV 240 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + +H F + VN ++ + + LR +ERG G T ACG+ ACA+V A Sbjct: 241 LVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAVGAGIRRG 300 Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEAY 296 + V V GG L I W + M G A +EG++++ + + D + Sbjct: 301 LLDSPVLVHTHGGDLTITWDIAQPGAPLLMAGPAATVFEGEIEL-AEEASGASPDSSQH 358 >gi|237747500|ref|ZP_04577980.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS] gi|229378851|gb|EEO28942.1| diaminopimelate epimerase [Oxalobacter formigenes HOxBLS] Length = 287 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 136/286 (47%), Gaps = 11/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V D ++T++ ++ DQI+++ Q+ + D Sbjct: 3 LKFTKMHGAGNDFIVFDACTQKVDLTAEQFRFIADRRFGIGADQILIVEKPQNPATDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R RF+ + R ET GI+ + ++G+++V+MG+ Sbjct: 63 RIFNADGGEVEQCGNGARAFARFVTVFNMTDRNPVRVETKAGIIELRVEKNGNVTVNMGK 122 Query: 123 PILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P IP + + L +VSMGNPHA+ VE ++ Sbjct: 123 PEFSPDRIPFDASGLKGKPAGDDMIWPLALELPKGLQTIEVSLVSMGNPHAVQIVE-NVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G L+ H F N + + S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 KAPVGETGPLIENHARFPNRTNAGFMEIENRHSIKLRVFERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+VK GG L I W+ N H V MTG A + G++D+ Sbjct: 242 IRRKLLDSPVTVKARGGTLEITWNGNGHEVTMTGPAVIVFNGEIDL 287 >gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073] gi|29839329|sp|Q8FBN6|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972] Length = 274 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + + + L VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700] gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700] Length = 274 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPTETIKRLADRHRGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLSVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + IP ++ + + VSMGNPH + VE D+ ++ Sbjct: 121 PVWEPNKIPF-----IANKFEKNYILRTTVQTVLCGAVSMGNPHCVVQVE-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG A ++G + + Sbjct: 235 DNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVIYL 274 >gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551] gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum IPO1609] gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551] gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum IPO1609] Length = 307 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 135/291 (46%), Gaps = 8/291 (2%) Query: 2 QSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + +M + F KM G GN +V+D + T + A++ DQ++L+ Sbjct: 13 RPAMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPD 72 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++ Sbjct: 73 VDFRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVT 132 Query: 118 VDMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P+ + +P + + VSMGNPHA+ V+ D Sbjct: 133 VDMGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDRTAWLSTVSMGNPHAVQVVD-DT 191 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 192 EAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVA 251 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + V V GGGL I W V MTG A +EG LD+ K Sbjct: 252 GIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302 >gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB] gi|123628370|sp|Q47JN0|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB] Length = 276 Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D +++ + + L+ DQI+L+ +D Sbjct: 3 LKFSKMHGLGNDFVVLDGVRQSVSLSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ ++ ET+RGI+ + DG+++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDEGLTDKREIRVETMRGIISPRLEGDGNVTVDMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D VVSMGNPHA+ V+ + + Sbjct: 123 PRFLPAEIPFLAEDDV-----IIHLLDVADETLETSVVSMGNPHAVQVVD-SVDTAPVGE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ KHP F VN ++ ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 177 HGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVAGIRRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A + G++++ Sbjct: 237 DSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276 >gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 274 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G ++ DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + VE D+ ++ Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTEIQTVLCSAVSMGNPHCVVQVE-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L IEW H ++MTG A ++G + Sbjct: 235 DNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272 >gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166224237|sp|A0KFI1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 276 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++DF+KM G+GN +V+D +++ I L+ FDQ++L+ D +D Sbjct: 2 LIDFSKMHGLGNDFMVVDGVTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + T RG +V + + ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + VSMGNPH + V + +A Sbjct: 122 VPQFEPGKIPF-----RAQKAEKTYLLRAQEHTVMCGAVSMGNPHCVIEV-PSVADAPVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ +H F E VN+ + + + LR +ERGVG T ACG+ ACA+VV K Sbjct: 176 TLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAVVVGISQGK 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 236 LKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 >gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316] gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316] Length = 276 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 2 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 62 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 122 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVETAAVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 176 TLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W ++MTG A ++G + + Sbjct: 236 LAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 276 >gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF) (SP:P08885) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 275 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ ++ + Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275 >gi|197287149|ref|YP_002153021.1| diaminopimelate epimerase [Proteus mirabilis HI4320] gi|229813240|sp|B4F1X7|DAPF_PROMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|194684636|emb|CAR46550.1| diaminopimelate epimerase [Proteus mirabilis HI4320] Length = 274 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G + + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNKREIKVSTQSGRMTLHVMDNEDVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + I + L VVSMGNPH + VE D+ ++ S Sbjct: 121 PEFEPQKVPFRA---QKVEKTYIIRAMERTVLCG--VVSMGNPHCVIQVE-DIKTAEVES 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G++L +H F E N+ +V +L LR +ERG G T ACGS ACA+V Sbjct: 175 LGSVLEQHERFPERANIGFMQVVDRNTLHLRVFERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V V + GG L IEW + ++MTG A ++G + + Sbjct: 235 DRKVKVNLPGGSLSIEWKGTGNPLYMTGPAVHIYDGTIQL 274 >gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617] Length = 282 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 9 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G ++ +D + V+MGE Sbjct: 69 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP + ++ VVSMGNPH + V+ ++ + + Sbjct: 129 PNFEPQQIPF-----RANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQVD-NVKTAAVET 182 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 183 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 242 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H +FMTG A ++G + + Sbjct: 243 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 282 >gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4] gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4] Length = 286 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 S+++ F KM G+GN +V+D + + D I L+ FDQ++L+ D +D Sbjct: 10 STLIQFTKMHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLD 69 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV+ CGNG RC RF+ ++ + T G + + RDG ++V+ Sbjct: 70 FHYRIFNADGSEVEQCGNGARCFARFVRNKGLTHKHKIRVSTSSGKITLRLERDGKVTVN 129 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+L+ IP + + VSMGNPH + V+D + D Sbjct: 130 MGIPVLEPSKIPFTAK-----KVEKTYLLLASSGTYLCGAVSMGNPHCVIEVDD-VAAAD 183 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G L H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV Sbjct: 184 VDTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGIQQ 243 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 K +R V V + GG L+I W ++MTG A+ ++G++ Sbjct: 244 GKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284 >gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2] Length = 276 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + D I L+ FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFMVIDNVTQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+MG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL ++ + VSMGNPH + VE D+ + Sbjct: 123 PEFEPAKIPLKA-----NKQENTYILRVNDKTLFYGAVSMGNPHCVMEVE-DVDTAPVKE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ ++ F EGVN+ ++ + + LR +ERG G T ACGS ACA+V K Sbjct: 177 IGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIGQIQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++V MTG A ++G +++ Sbjct: 237 SKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276 >gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96] gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96] gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163] Length = 274 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G ++ +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPQQIPF-----RANKAENIYLMRAVEQTVMCGVVSMGNPHCVLQVD-NVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H +FMTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274 >gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a] gi|254767105|sp|B7MR29|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a] Length = 274 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNTDGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + + + L VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPFRAN---KVEKTYIMRAAEQTILCG--VVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043] gi|81643660|sp|Q6CZG8|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043] Length = 274 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + H L VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVETAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F + N+ +V +++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|293391245|ref|ZP_06635579.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951779|gb|EFE01898.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 274 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 137/278 (49%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAMTQNIYFPTETIKRLADRHRGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K+ T G ++ DG++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKNIAVSTQNGKMLLTVKEDGNVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + VE D+ ++ Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTEIQTVLCSAVSMGNPHCVVQVE-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L IEW H ++MTG A ++G + Sbjct: 235 DNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVV 272 >gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430] gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946] gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946] gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430] gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158] Length = 274 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G ++ +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PGFEPQQIPF-----RANKAENIYLMRAVEQTVMCGVVSMGNPHCVIQVD-NVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H +FMTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274 >gi|269137480|ref|YP_003294180.1| diaminopimelate epimerase [Edwardsiella tarda EIB202] gi|267983140|gb|ACY82969.1| diaminopimelate epimerase [Edwardsiella tarda EIB202] gi|304557553|gb|ADM40217.1| Diaminopimelate epimerase [Edwardsiella tarda FL6-60] Length = 274 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 128/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R+ T G + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVGEDDRVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + + VSMGNPH + VE D+ + Sbjct: 121 PQFEPGRIPFKAA-----KAEKTYILRVAQQTVLCGAVSMGNPHCVLQVE-DVSRAQVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMQVVERDHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + MTG A ++G + + Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274 >gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 275 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 85/281 (30%), Positives = 131/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGS+V CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSDVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 LAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275 >gi|207727618|ref|YP_002256012.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum MolK2] gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum MolK2] Length = 307 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 135/291 (46%), Gaps = 8/291 (2%) Query: 2 QSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + +M + F KM G GN +V+D + T + A++ DQ++L+ Sbjct: 13 RPAMKLHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPD 72 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++ Sbjct: 73 VDFRYRIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVT 132 Query: 118 VDMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P+ + +P + + VSMGNPHA+ V+ D Sbjct: 133 VDMGAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDRTAWLSTVSMGNPHAVQVVD-DA 191 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 192 EAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVA 251 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + V V GGGL I W V MTG A +EG LD+ K Sbjct: 252 GIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 302 >gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22] gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22] Length = 274 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 130/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F E N+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 AETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274 >gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213] gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213] gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 274 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I LS FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P + + + L VVSMGNPH + V+ D+ + Sbjct: 121 PIWEPSQVPFTAN-----KFEKNYILRTELQTVLCGVVSMGNPHCVLQVD-DVKTAPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+S +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACGTVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 235 DNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL 274 >gi|308188854|ref|YP_003932985.1| Diaminopimelate epimerase [Pantoea vagans C9-1] gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1] Length = 282 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 9 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V D + V+MGE Sbjct: 69 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNMGE 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VSMGNPH + VE + + Sbjct: 129 PNFEPQQVPF-----RANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SVKTAQVEL 182 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F + VN+ + + E + LR +ERG G T ACGS ACA+V Sbjct: 183 LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGVL 242 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++MTG A ++G + + Sbjct: 243 APKVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 282 >gi|254495752|ref|ZP_05108666.1| diaminopimelate epimerase [Legionella drancourtii LLAP12] gi|254355030|gb|EET13651.1| diaminopimelate epimerase [Legionella drancourtii LLAP12] Length = 308 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 4 SM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 +M + F KM G+GN +VID N+ I L+ + FDQ++LI +D Sbjct: 29 NMRIKFTKMHGLGNDFIVIDGINQSINLQPLQIAKLAQRNTGIGFDQLLLIERSTHTGID 88 Query: 62 AFIRIINCDGSEVQSCGNGMRC--VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV CGNG RC V + + T T + + N D S+ V+ Sbjct: 89 FNYRIFNADGQEVGQCGNGARCLAVFAKYYNLTHKNHLTVATTTTQMSLQINADNSVRVE 148 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L+ IPL+ + + + H +S+GNPHA+ V+ D+ Sbjct: 149 MGIPQLNPAAIPLSAEHQAAE----YQLELQHGQTATMHAISVGNPHAVLLVK-DVETAP 203 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G+ ++ HP F N+ ++ + + + LR +ERG G T ACGS A A+V Sbjct: 204 VPTLGHEISIHPRFPAQANVGFMQIINPQHIKLRVYERGCGETLACGSGAVAAVAIGRLY 263 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 H+ ++ V+V + GG L+I+W D + +TG A +EG+L Sbjct: 264 HRLDKQVTVSLPGGELIIDWPDFTAPITLTGPAVFVYEGQL 304 >gi|253690336|ref|YP_003019526.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259595059|sp|C6DHB7|DAPF_PECCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|251756914|gb|ACT14990.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 274 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + H L VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SANVRVSLPGGDLDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69] gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75] gi|254767103|sp|B7UNC6|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69] gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75] Length = 274 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431432|sp|P57962|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70] Length = 274 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G ++ DG I ++MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTA-----NKFEKNYILRTSIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVAVGVMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW +FMTG+A ++G + + Sbjct: 235 DSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274 >gi|242237690|ref|YP_002985871.1| diaminopimelate epimerase [Dickeya dadantii Ech703] gi|242129747|gb|ACS84049.1| diaminopimelate epimerase [Dickeya dadantii Ech703] Length = 274 Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + VVSMGNPH + VE ++ + + Sbjct: 121 PNFEPQQVPFRAA-----KSEKTYILRVAERTVMCGVVSMGNPHCVIQVE-NVDTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ + ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIINRNAIQLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V++ GG L I W N +FMTG A ++G + + Sbjct: 235 AADVNVRLPGGELNIHWDGPGNPLFMTGPATHVYDGFIHL 274 >gi|300714800|ref|YP_003739603.1| Diaminopimelate epimerase [Erwinia billingiae Eb661] gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661] Length = 274 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + ++ VVSMGNPH + V+ + + S Sbjct: 121 PNFDPQQVPF-----RANKAENLYLMRVAEQTIMCGVVSMGNPHCVLQVD-SVKTAAVES 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H ++MTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957] gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957] Length = 292 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 132/286 (46%), Gaps = 7/286 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 3 LHFTKMHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 63 RIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P + + VSMGNPHA+ V+ D + + Sbjct: 123 PVFEAARLPFVPDGLPTRVEGRDAQHALQVNGRTAWLSTVSMGNPHAVQVVD-DTEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + V V GGGL I W V MTG A +EG LD+ K Sbjct: 242 LLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287 >gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591] gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591] Length = 274 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 130/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + VVSMGNPH + VE ++ + Sbjct: 121 PNFEPQQVPF-----RAVKPEKTYILRAAERTVLCGVVSMGNPHCVLQVE-NVDSASVEE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 AADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDGFIHL 274 >gi|323143040|ref|ZP_08077745.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066] gi|322417181|gb|EFY07810.1| diaminopimelate epimerase [Succinatimonas hippei YIT 12066] Length = 277 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 144/282 (51%), Gaps = 10/282 (3%) Query: 5 MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 M+ F+KM G+GN +V+D + + I LS FDQ++L+ D VD Sbjct: 1 MILKFSKMHGLGNDFMVVDGVTQKIFFSPELIKRLSDRHFGVGFDQLLLVEPPYDPEVDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEVQ CGNG RC VRF+ ++ T+ G+L K N D S++V+M Sbjct: 61 HYRIFNADGSEVQMCGNGARCFVRFVVDHGLTNKRDIKVSTVSGVLRLKLNNDDSVTVNM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P LD + +P + G VSMGNPHA+ V+ D+ + Sbjct: 121 GVPQLDPEKLPFKAEAQSESYELCVKGFDAVTIG----AVSMGNPHAVINVK-DVKTAPV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ KH F E VN+ ++ + ++LR +ERG G T ACG+ ACA+VVA H Sbjct: 176 HELGSLVEKHERFPEKVNVGFSQKVNDHEINLRVFERGCGETLACGTGACAAVVAGIVQH 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I W N V M+G A +EG++ I Sbjct: 236 RLVSPVKVNLPGGSLNISWDGKNSPVMMSGPAVLVYEGQIVI 277 >gi|41237|emb|CAA31413.1| unnamed protein product [Escherichia coli K-12] Length = 275 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVTTANGRMVLTVTDDDLVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHWLIQVD-DVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVKRDDIRLRVYERGAGETQACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275 >gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1] gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1] Length = 276 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D I LS + FDQ++++ D +D Sbjct: 2 LLKFTKMHGLGNDFVVVDAVSRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC +F+ R ++ ET RG + + G ++VDMG Sbjct: 62 YRIYNSDGSEVEHCGNGARCFAKFVLDRELTNKRIINVETKRGAIQLRVLDGGLVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + +P +L VS+GNPHA+ V+ + +A Sbjct: 122 APSFEPQDLPFTAE-PCDVLYSIMAEDTEYLITP----VSVGNPHAVIKVDQLIDDE-VA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F VN+ +V + + ++LR +ERGVG T ACG+ ACA+VVA Sbjct: 176 KVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAAVVAGIKQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+ + GG L IEW + MTG A+K +EG++ + Sbjct: 236 LSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQIYL 276 >gi|229807518|sp|A4G980|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas arsenicoxydans] Length = 283 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 7/282 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +VID + T L+ DQ++++ Q A VD Sbjct: 3 IKFTKMHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R V+F+T + +++ ET+ G++ + +G I+VDMG Sbjct: 63 RIYNADGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 PIL + +P S + V+SMGNPHA+ V D H + Sbjct: 123 PILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVV-ADADHAPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 182 REDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+ GG L I W +N V +TG A +EG++++ Sbjct: 242 LLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283 >gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999] Length = 276 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 138/279 (49%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +V+F KM G+GN +V+D + + + I L+ FDQ++L+ D D Sbjct: 2 LVEFTKMHGLGNDFMVVDCITQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + + + T G ++ +DG ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +P+ + VS+GNPH + V+ D+ YD+ Sbjct: 122 RPRFAPDDVPMKA-----QKQENTYIIREADQTFFCGAVSLGNPHCVMVVD-DIDTYDVL 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F + VN+ ++ ++ LR +ERGVG T ACGS ACA+V K Sbjct: 176 GVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAIGQQQGK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V+V + GG L I W ++H + MTG A+ ++GK+ Sbjct: 236 LGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKI 274 >gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2] gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2] Length = 283 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 11/282 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++++ F+KM+G+GN +VID ++++ I + FDQ++++ + VD Sbjct: 2 TNLLKFSKMQGLGNDFMVIDGTQETITLSTEEIRFWANRYFGVGFDQLLMVENSAQGDVD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEVQ CGNG RC +F+ + + ET G++V G + V+ Sbjct: 62 FRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEIRVETASGMIVLYITDQGWVRVN 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +P + + G + VSMGNPHA+ V DL Sbjct: 122 MGAPNFLPEALPFDMPLESEQYELDVDGERFEIG-----AVSMGNPHAVLRV-ADLGAAP 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G + H +F E VN+ A + + LR +ERG T ACG+ ACA++V L Sbjct: 176 VAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAETLACGTGACAAMVVLRNL 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH--VFMTGEAKKEWEGKL 279 + + V+V + GG L IEW+ + V+MTG A +EG++ Sbjct: 236 GEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277 >gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122] Length = 276 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ + FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFVVVDCITQNVFFSPDLIRRLADRNTGIGFDQLLIVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DG EV+ CGNG RC RF+ + + T +G ++ D ++V+MG P Sbjct: 64 IFNSDGGEVEQCGNGARCFARFVRMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP R++ +I L VS+GNPH + VE +L + Sbjct: 124 EFEPSKIPFKAK----QREKTYILRAQDKTLFCG-AVSLGNPHVVTVVE-ELSDALIDEI 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G +L H F E VN +V S + LR +ERG G T ACG+ ACA+V + Sbjct: 178 GPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVAVGIAQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V+V + GG L I W + ++MTG A ++G+L Sbjct: 238 ENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQL 274 >gi|271502382|ref|YP_003335408.1| diaminopimelate epimerase [Dickeya dadantii Ech586] gi|270345937|gb|ACZ78702.1| diaminopimelate epimerase [Dickeya dadantii Ech586] Length = 274 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPDLIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTSKREINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + H L VVSMGNPH + V+ ++ + Sbjct: 121 PNFEPQQVPFRAA---KPEKTYILRAAEHTVLCG--VVSMGNPHCVLQVD-NVDTAPVEE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 QGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H +FMTG A ++G + + Sbjct: 235 AADVKVQLPGGELDIHWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15] Length = 292 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 131/286 (45%), Gaps = 7/286 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 3 LHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 63 RIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGIATLTMQPDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P + + VSMGNPHA+ V+ D + + Sbjct: 123 PVFEAARLPFVPDGLPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQVVD-DAQAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 REDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W V MTG A +EG LD+ K Sbjct: 242 LLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287 >gi|227114725|ref|ZP_03828381.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + H L VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVETAKVDT 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQVVDSHAVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + +V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SASVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|71278746|ref|YP_266845.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H] gi|123634292|sp|Q48AR8|DAPF_COLP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71144486|gb|AAZ24959.1| diaminopimelate epimerase [Colwellia psychrerythraea 34H] Length = 276 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN LV+D + ++ + I + FDQ++++ D +D Sbjct: 2 LVNFSKMHGLGNDFLVLDNVTQNVFLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC +F+ + + T G + RDG+ISV M Sbjct: 62 YRIYNADGSEVGQCGNGARCFAKFVRMKGLCNKHKIKVSTSTGKMNLHIERDGNISVTMP 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + K IP + + VSMGNPH + V+ + D+ Sbjct: 122 VPQFEPKKIPFTA-----QKTEGTYILRSESETVLCGAVSMGNPHCVVTVD-SVAEADVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G L+ H F E N+ + S + LR +ERG T ACGS ACA+VV K Sbjct: 176 SLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVVIGYMQKK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V++ GG L I W H V M+G A ++G++ I Sbjct: 236 LAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQISI 276 >gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102] gi|229813236|sp|B2J3A7|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102] Length = 279 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 138/281 (49%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + AI D ++ ++ D Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ F + S+ T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP + ++ + V+MGNPH I FVE D+ + Sbjct: 122 MGLPRLLAGEIPTTLA--PVEEKVISVPLEVAGKTWEVTCVNMGNPHCITFVE-DVAAIE 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L S G HP F + +N +V + L +R WERG G+T ACG+ ACAS+VA Sbjct: 179 LESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R +V++ GG L IEW + + V+MTG A++ + GKL Sbjct: 239 GKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279 >gi|170769865|ref|ZP_02904318.1| diaminopimelate epimerase [Escherichia albertii TW07627] gi|170121303|gb|EDS90234.1| diaminopimelate epimerase [Escherichia albertii TW07627] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ + FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLSVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274 >gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99] gi|229807512|sp|B2VI49|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V +D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPQQIPF-----RANKAENIYLMRAAEQTVMCGVVSMGNPHCVLQVD-NVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACAAVAVGIQQASL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W H ++MTG A ++G + + Sbjct: 235 AEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|294637957|ref|ZP_06716224.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685] gi|291088889|gb|EFE21450.1| diaminopimelate epimerase [Edwardsiella tarda ATCC 23685] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 128/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R+ T G + + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNGRMTLHVDDDERVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D IP + + VSMGNPH + VE D+ +A Sbjct: 121 PQFDPGRIPFKAA-----KAEKTYILRVAQQTVLCGAVSMGNPHCVLQVE-DVSQAQVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPALESHERFPERVNVGFMQVVDRGYIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W + M G A ++G + + Sbjct: 235 DEQVRVELPGGTLHICWQGPGTPLLMIGPATHVYDGFIHL 274 >gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-NVETAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274 >gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D] gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D] Length = 292 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 135/286 (47%), Gaps = 7/286 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 3 LHFTKMHGAGNDFVVLDGIQTPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 63 RIFNHDGGEVEHCGNGARCFVKFVTDRGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P +++ D + VSMGNPHA+ V+ D + + Sbjct: 123 PVFEAARLPFLPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIVD-DTEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H +F VN ++ S+ LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W V MTG A +EG LD+ K Sbjct: 242 VLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDLDALK 287 >gi|238918090|ref|YP_002931604.1| diaminopimelate epimerase, [Edwardsiella ictaluri 93-146] gi|259595054|sp|C5BBD4|DAPF_EDWI9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|238867658|gb|ACR67369.1| diaminopimelate epimerase, putative [Edwardsiella ictaluri 93-146] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 125/280 (44%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R+ T + D ++V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRIKGLTNRRDIRVSTQNSRMTLHVGEDDRVTVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + + VSMGNPH + VE D+ + Sbjct: 121 PQFEPGRIPFKAA-----KAEKTYILRVAQQTVLCGAVSMGNPHCVLQVE-DISRAQVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ +V + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPSLESHERFPERVNVGFMQVVERSHIRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + MTG A ++G + + Sbjct: 235 DEQVQVDLPGGTLHIRWPGPGTPLLMTGPAAHVYDGFIHL 274 >gi|157368431|ref|YP_001476420.1| diaminopimelate epimerase [Serratia proteamaculans 568] gi|167012038|sp|A8G852|DAPF_SERP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157320195|gb|ABV39292.1| Diaminopimelate epimerase [Serratia proteamaculans 568] Length = 274 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + + H L VVSMGNPH + V+ D+ + Sbjct: 121 PNFDPQTVPFRATKE---EKTYIMRAAEHTVLCG--VVSMGNPHCVLQVD-DVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W +FMTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274 >gi|329113599|ref|ZP_08242379.1| Diaminopimelate epimerase [Acetobacter pomorum DM001] gi|326697121|gb|EGE48782.1| Diaminopimelate epimerase [Acetobacter pomorum DM001] Length = 288 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 101/283 (35%), Positives = 140/283 (49%), Gaps = 15/283 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 S + F KM G+GN +++D RG H +T I AL+ DQ++ + Sbjct: 17 HSMLTSFRKMHGLGNDFVILDERGGHLPLTPARIAALAHRRRGIGCDQLVTLRPACAEGA 76 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D F+R N DGSE +CGN RCV + ++ +T G L A+ +G I+VDM Sbjct: 77 DVFVRFFNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDM 136 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L+W+ +PL D + +P SMGNPHA FF + + Sbjct: 137 GEPRLNWQDVPLVAEMDTLHL----------PLEGDPAAASMGNPHATFF----VEDFAR 182 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L P+F E N+ AR+ + L+ ERG G+T ACGS ACA+VV + Sbjct: 183 LSQGQALEHDPLFPERANIGFARIDGSARMRLKVHERGAGVTEACGSGACAAVVNAARRG 242 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 R V++ GG L IEW NNHV MTG A +EG +D+ Sbjct: 243 LVERVCEVELDGGILQIEWAPNNHVLMTGSATTAFEGTVDLAA 285 >gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT] gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT] Length = 290 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN +V+D ++ +D I L+ FDQ++L+ VD Sbjct: 15 LSFTKMQGIGNDFIVVDGYSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDFRY 74 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VR++ + ++ +T RGI++ + +G ++V+MGE Sbjct: 75 RIFNADGGEVEQCGNGARCFVRYVHDKSLTSKREIRVQTARGIILPRLEDNGLVTVNMGE 134 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P DR+ V SMGNPHA+ VE D+ + Sbjct: 135 PRFEPAEVPF-----IADREAMTYLLQVADQALEISVASMGNPHAVTVVE-DVDTAPVER 188 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA+V + Sbjct: 189 LGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASGIRRGLL 248 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 V V GG L+I W V+MTG A+ +EG +DI+ Sbjct: 249 QSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSIDIE 289 >gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB] gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB] Length = 274 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VSMGNPH + VE + + Sbjct: 121 PNFEPQQVPF-----RANKAENLYLLRVAEQTVMLGAVSMGNPHCVIQVE-SVKTAQVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F + VN+ + + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W ++MTG A ++G + + Sbjct: 235 APNVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 274 >gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17] gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17] Length = 328 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 10/284 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 ++ F KM G+GN +V+D + + I L+ FDQ++++ VD Sbjct: 34 GVLRFTKMHGLGNDFMVVDAISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDVDF 93 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF +K +T GI+ + +DG + VDM Sbjct: 94 RYRIFNADGSEVEQCGNGARCFARFVRDQRLTNKKVMRVQTAGGIIELRVGKDGLVKVDM 153 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L+ +P + + + N VVSMGNPH + + D+ + Sbjct: 154 GVPRLEPATVPFSAD-EFAPVYNLDVNGQNIEL----SVVSMGNPHGVILTD-DVDSAPV 207 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G LL KH F N+ ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 208 ATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAVVAGCLRG 267 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283 + V V++ GG L+IEW V M G +EG+L + Sbjct: 268 LLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRLPA 311 >gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163] gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163] Length = 274 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + H L VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVD-DVETAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ +++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACAAVAVGILQGSL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I+W H +FMTG A ++G + + Sbjct: 235 SAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274 >gi|238784733|ref|ZP_04628736.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970] gi|238714329|gb|EEQ06338.1| Diaminopimelate epimerase [Yersinia bercovieri ATCC 43970] Length = 274 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFDPQSVPF-----RATKAEKTYIFRAAEQTVLCGVVSMGNPHCVLQVD-DVAVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S +++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDNIRLRVYERGAGETQACGSGACAAVAVGIQQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V++ GG LLI W H ++MTG A ++G + + Sbjct: 235 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|320539386|ref|ZP_08039055.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson] gi|320030511|gb|EFW12521.1| diaminopimelate epimerase [Serratia symbiotica str. Tucson] Length = 274 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAITQNVYFSPELIRRLSDRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V + + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVQLKGLTNKCELRVSTQSGRMVLNVTGNDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + H L +VSMGNPH + V+ D+ +A Sbjct: 121 PNFDPQAVPFRA---TKAEKTYIMRAAEHTVLCG--IVSMGNPHCVLQVD-DVNTAKVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGSGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W +FMTG A ++G + + Sbjct: 235 SEEVRVELPGGSLHIRWKGPGSPLFMTGPATHVYDGFIHL 274 >gi|239993650|ref|ZP_04714174.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126] Length = 276 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I L+ FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+MG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL + ++ +I V L SMGNPH + V+ D+ ++A Sbjct: 123 PEFEPANIPLKAN----KQENTYILRVGESTLFIGSA-SMGNPHCVMEVD-DVDTANVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ KH F EGVN+ ++ + + LR +ERG G T ACGS ACA+V K Sbjct: 177 IGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 + V V + GG L I W ++V MTG A+ ++G +++ Sbjct: 237 GKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276 >gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c] gi|123170519|sp|Q15NG5|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c] Length = 276 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I+ L+ FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R T G +V RDG I+V+MGE Sbjct: 63 RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IPL + + + VSMGNPH + V+ D+ D+ Sbjct: 123 PIFEPAKIPLKAN-----KQENIYIIRENDHTFFCGAVSMGNPHCVLLVD-DVETADVEG 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F EG N+ ++ + + LR +ERGVG T ACGS ACA+V K Sbjct: 177 IGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 N+ V+V + GG L I W + MTG A+ ++G + + Sbjct: 237 NKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276 >gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae Length = 274 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G +V I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|90581047|ref|ZP_01236847.1| diaminopimelate epimerase [Vibrio angustum S14] gi|90437743|gb|EAS62934.1| diaminopimelate epimerase [Vibrio angustum S14] Length = 276 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+GN +V+D + + DAI L+ FDQ++++ D D Sbjct: 3 INFSKMHGLGNDFVVVDCVTQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF++ + + + T G ++ K D ++V+MG Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVSMKGLTNKYHISVSTKAGKMLLKLENDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP+ ++ +I L SMGNPH V DD+ D+ + Sbjct: 123 PIFEPNKIPMKAK----QAEKTYILRAGEQTLFCG-AASMGNPHC-VTVVDDVDTADVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V ++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVAIGRVQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L I W +FMTG A ++G+ Sbjct: 237 DENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQF 274 >gi|197103593|ref|YP_002128970.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1] gi|229813239|sp|B4RCE2|DAPF_PHEZH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|196477013|gb|ACG76541.1| diaminopimelate epimerase [Phenylobacterium zucineum HLK1] Length = 277 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 147/281 (52%), Gaps = 7/281 (2%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 M ++M F KM G+GN +V++ R T+ + A++ DQ++ + + Sbjct: 1 MSAAMGRPFLKMNGLGNDFVVVETRSAPFEPTAAQVRAIADRATGIGCDQLIAVDPAE-- 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 DA +R N DG EV +CGNG RCV L + ET G LVA + +SV Sbjct: 59 GADAHVRFWNADGEEVGACGNGTRCVGWLLMQSSGKDEAVIETRAGRLVATRAGERLVSV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+W IPLA D D + + P VSMGNPH +FFV D Sbjct: 119 DMGPPRLEWNEIPLAEPHDTRALDVVLY--HHADLMAPPGCVSMGNPHVVFFV-PDAEQA 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 A G + HP+F E VN+ A+V + + + LR WERG GLT ACG+ ACA++VA+ Sbjct: 176 PAAEAGPAIEGHPLFPEHVNVGFAQVKAPDRIRLRVWERGAGLTKACGTGACAAMVAASR 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R ++++ GG L +EW + HV MTG A +++G+L Sbjct: 236 RGLIGRHATMELDGGELFVEWRADGHVIMTGPAAVDFQGEL 276 >gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4] gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4] Length = 276 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F KM+G+GN +VID ++T+ + ++ DQ++L+ VD Sbjct: 3 VAFTKMQGLGNDFVVIDTISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + ++ +T G++ D ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARFVREQGLTGKERLQVQTAGGVIRLHLETDKQVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + D VSMGNPH + V + +A Sbjct: 123 PRFAPDEIPFKADHE-ADSYLLEFDKQRVEIG----AVSMGNPHCVLRVAA-IDAAPIAC 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G +L +HP F + VN+ V S + LR +ERG G T ACG+ ACA++V Sbjct: 177 WGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMVIGRRRGWL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W V+MTG A+ +EG +++ Sbjct: 237 SEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276 >gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 276 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I L+ FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + R T G +V RDG ++V+MGE Sbjct: 63 RIFNSDGSEVSQCGNGARCFARFVKMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNMGE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL + + + VSMGNPH + V+ D+ D+ Sbjct: 123 PEFEPSKIPLKAN-----KQENIYIIRENDHTFFCGAVSMGNPHCVLLVD-DIATTDVEG 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F EG N+ ++ + + LR +ERGVG T ACGS ACA+V K Sbjct: 177 IGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAVAVGQMQKKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 N+ V+V + GG L I W + MTG A+ ++G + + Sbjct: 237 NKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276 >gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031] gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031] Length = 274 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC +F+T + +K + +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFAQFVTLKGLTNKKDISVSAQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392165|sp|P0A1F2|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|60392166|sp|P0A1F3|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81599710|sp|Q5PKM6|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082839|sp|A9MY70|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813242|sp|B5EZS3|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813243|sp|B5FNU5|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813244|sp|B4TB37|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813245|sp|B4SZ51|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813246|sp|B5BIV6|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813247|sp|B4TNV9|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205373|gb|EFZ90347.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 274 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274 >gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20] gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP] gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655] gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII] gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021] gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW] gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127] gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047] gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116] gi|1169225|sp|P44859|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81336228|sp|Q4QME8|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate Epimerase At 1.7a gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex With An Irreversible Inhibitor Ll-Azidap gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex With An Irreversible Inhibitor Dl-Azidap gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20] gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP] gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655] gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII] gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21] gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW] gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127] gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866] gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047] gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116] Length = 274 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99] gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99] Length = 274 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 138/273 (50%), Gaps = 5/273 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++L+ D +D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG RC RF+ ++ ++ T G L + +DG+++V+MG P+L+ Sbjct: 61 DGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVLEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + + + VSMGNPH + VE D+ D+ G LL Sbjct: 121 SKIPFNAKRPEKTYLLQTDTAESKMQTFLCGAVSMGNPHCVLDVE-DIQAADVEGIGALL 179 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 +H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV K ++ V Sbjct: 180 TQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVGQLQGKLDKRVR 239 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V + GG L I W ++MTG A+ ++G++ Sbjct: 240 VDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQI 272 >gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179] gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179] Length = 274 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGITQSVYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + +K T +G +V N D ++ V+MGE Sbjct: 61 RIFNADGSEVEQCGNGARCFARFVRLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + + VVSMGNPH + VE D+ ++ Sbjct: 121 PIWEPAKVPF-----IANKFEKNYILRTDIQTVLCGVVSMGNPHCVLQVE-DVKTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F N+ +V + + + LR +ERG G T ACG+ ACA+V Sbjct: 175 LGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L+IEW ++MTG+A ++G + + Sbjct: 235 DNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274 >gi|293393892|ref|ZP_06638199.1| diaminopimelate epimerase [Serratia odorifera DSM 4582] gi|291423719|gb|EFE96941.1| diaminopimelate epimerase [Serratia odorifera DSM 4582] Length = 274 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +++D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMMVDAVTQNVYFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + H L VVSMGNPH + V+ D+ + Sbjct: 121 PNFDPQTVPFRAA---KAEKTYIMRAAEHTVLAG--VVSMGNPHCVLQVD-DVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSRDRIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W +FMTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHIRWKGPGTPLFMTGPATHVYDGFIHL 274 >gi|186474847|ref|YP_001856317.1| diaminopimelate epimerase [Burkholderia phymatum STM815] gi|229807493|sp|B2JJY4|DAPF_BURP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|184191306|gb|ACC69271.1| Diaminopimelate epimerase [Burkholderia phymatum STM815] Length = 286 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 138/284 (48%), Gaps = 8/284 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N+T + AL+ DQ++++ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F + ++S + +G++ +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDSRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P S + R+ + R VVSMGNPHA+ V+ D+ + + Sbjct: 123 PVFEPVQVPFDASGVEARREGNDTLYALEVNGETRWVSVVSMGNPHAVQVVD-DVEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ HP F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LVDGPVIETHPRFPQRVNAGFMQIVGRSEVKLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W+ + + M G A +EG++++ Sbjct: 242 LLDAPVKVHTHGGTLTITWNGESASSLMMAGPAATVFEGEIELA 285 >gi|326625664|gb|EGE32009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 275 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + + + ++ VVSMGNPH + V+ ++ + Sbjct: 121 EPNFEPAQVTF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275 >gi|148652161|ref|YP_001279254.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1] gi|172048462|sp|A5WCB3|DAPF_PSYWF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148571245|gb|ABQ93304.1| diaminopimelate epimerase [Psychrobacter sp. PRwf-1] Length = 293 Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 139/280 (49%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ + FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ +R ++ ET GIL + G + VDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP ++ +H+ +V +MGNPHA+ V+ D+ D+ Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKVD-DILTADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 179 KLGKAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREGW 238 Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + ++ GG LLI W V MTG +EG Sbjct: 239 LDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVF 278 >gi|238798589|ref|ZP_04642065.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969] gi|238717545|gb|EEQ09385.1| Diaminopimelate epimerase [Yersinia mollaretii ATCC 43969] Length = 278 Score = 238 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 65 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDEEVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + H L VVSMGNPH + V+ D+ ++A Sbjct: 125 PNFDPQSVPFRA---TKAEKTYIFRAAEHTVLCG--VVSMGNPHCVLQVD-DVSVANVAL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E++ LR +ERG G T ACGS ACA+V Sbjct: 179 LGPVLESHERFPERANIGFMQVVSRENIRLRVYERGAGETQACGSGACAAVAVGIQQELL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V++ GG LLI W H ++MTG A ++G + + Sbjct: 239 DEEVTVELPGGSLLISWKGPGHPLYMTGPATHVYDGFIHL 278 >gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 274 Score = 238 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + + + V L VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPAQVPFRAN---KAEKTYIMRAVEQTILCG--VVSMGNPHCVIQVD-NVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274 >gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21] gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21] Length = 274 Score = 238 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 144/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIQRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G ++ D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMILTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + ++ +I + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN----KFEKNYILRTDIQTVLCGT-VSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDGFITL 274 >gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1] gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1] Length = 274 Score = 238 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W +FMTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274 >gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305] gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305] Length = 274 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V +G + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQIPFTA-----NKFEKNYILRTSLQTVLCGVVSMGNPHCVLQVE-DIQTAPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 235 DSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDGFVKL 274 >gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301] gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942] gi|81561459|sp|Q5N013|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123556543|sp|Q31LW2|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301] gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942] Length = 280 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 8/282 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAF 63 + FAK G+GN +++D R +T + + + D ++ D Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPG-SGDSDYV 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC+ +F + + T G++V G ++VDMG Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 L IP + VSMGNPH I FVE D+ LA Sbjct: 122 PAYLKPVEIPTTLTG--TGDRVVEADLEVGDRPWKVTTVSMGNPHCITFVE-DVAAVPLA 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP+F + N V + L +R WERG G T ACG+ ACA++VA+ + Sbjct: 179 EIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLTGR 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 ++R +V++ GG L IEW ++ H+FMTG A K + G +++ Sbjct: 239 SDRQATVELPGGPLQIEWREDGHLFMTGPAVKVFSGSMELAA 280 >gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901] gi|259595063|sp|C5BUL6|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901] Length = 276 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 131/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN ++ID IT + L+ DQ++++ + D Sbjct: 3 LRFTKMHGLGNDFVMIDAISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV++CGNG RC + ET G+L D ++V+MG Sbjct: 63 RIFNNDGSEVENCGNGARCFAVFVRQRQLTAKSDIVVETAAGLLRLHVLDDNQVTVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+L IP ++ + + + VSMGNPHA+ V+ +L + + + Sbjct: 123 PVLAPAQIPFVTPHEQPEY-PLQLDNMEITI----SAVSMGNPHAVTLVD-NLASFPVKT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F VN + S + + LR +ERGVG T ACG+ ACA+VV+ Sbjct: 177 LGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAVVSGIVRGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W V MTG AK + G++ + Sbjct: 237 DTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276 >gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103] gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103] gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355] Length = 282 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 129/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 9 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFHY 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V D + V+MGE Sbjct: 69 RIFNADGSEVAQCGNGARCFARFVQLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNMGE 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VSMGNPH + VE + Sbjct: 129 PNFEPQQVPF-----RANKAENLYLLRVAEQTVMFGAVSMGNPHCVIQVE-STKTAQVEL 182 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ + S E + LR +ERG G T ACGS ACA+V Sbjct: 183 LGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 242 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A ++G + + Sbjct: 243 SQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDGFIHL 282 >gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2] gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2] Length = 276 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +V+F+KM G+GN +VID + I D I L+ FDQ++++ D +D Sbjct: 2 LVNFSKMHGLGNDFMVIDNVTQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ + T G + +DG +SV+MG Sbjct: 62 YRIFNSDGTEVEQCGNGARCFARFVRMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P L+ IP + + + +H VSMGNPH + V+ D+ + Sbjct: 122 QPKLEPHTIPFKAAKR---ENTYIFRAQDHTVFCG--AVSMGNPHCVVEVD-DITTAPVN 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL H F + N+ ++ S E + LR WERG G T ACG+ ACA+VV K Sbjct: 176 VLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGACAAVVVGILQKK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L + W H V MTG A+ ++G++ + Sbjct: 236 LAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276 >gi|253991594|ref|YP_003042950.1| diaminopimelate epimerase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638472|emb|CAR67094.1| diaminopimelate epimerase (ec 5.1.1.7) (dap epimerase) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783044|emb|CAQ86209.1| diaminopimelate epimerase [Photorhabdus asymbiotica] Length = 278 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ + FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + ++ T G +V D + V+MGE Sbjct: 65 RIFNSDGSEVAQCGNGARCFARFVRLKGLINKREIKVSTQSGRMVLSITNDDQVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + R VVSMGNPH + V D+ ++ Sbjct: 125 PEFEPHNIPF-----RALRAEKTYILRVIEKTVLCSVVSMGNPHCVIQV-ADVETAEVEI 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 179 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 238 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W N ++MTG A ++G + + Sbjct: 239 DSNVRVDLPGGSLFICWAGPGNPLYMTGPATHVYDGTIHL 278 >gi|262172885|ref|ZP_06040563.1| diaminopimelate epimerase [Vibrio mimicus MB-451] gi|261893961|gb|EEY39947.1| diaminopimelate epimerase [Vibrio mimicus MB-451] Length = 276 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKALYMTGPATHVYDGQI 274 >gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b] gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b] Length = 274 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VSMGNPH + VE ++ + + Sbjct: 121 PNFEPQHVPF-----RANKAENLYLLRVAEQTVMFGAVSMGNPHCVIQVE-NVKTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E VN+ V + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G + + Sbjct: 235 AEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274 >gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 275 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS F+Q++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + +P + ++ VVSMGNPH + V+ ++ + Sbjct: 121 EPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVE 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 TLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 LAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275 >gi|123440586|ref|YP_001004580.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225763|sp|A1JI90|DAPF_YERE8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|122087547|emb|CAL10328.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 274 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFEPQSVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473] gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473] Length = 278 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 135/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D +SV+MGE Sbjct: 65 RIFNADGSEVSQCGNGARCFARFVRIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + IP + + H L VVSMGNPH + V+ D+ ++ Sbjct: 125 PNFEPQAIPFKA---IKAEKTYILRAAEHTVLCG--VVSMGNPHCVLQVD-DVSAANVEL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACAAVAVGIQQALL 238 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W ++MTG A ++G + + Sbjct: 239 DEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDGFIHL 278 >gi|332977414|gb|EGK14191.1| diaminopimelate epimerase [Psychrobacter sp. 1501(2011)] Length = 293 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLELTEELIALLADRHMGIGFDQLLVVEPPMRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ +R ++ ET GIL + G + VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQARKLSFKQRIRVETKSGILTLTTDNYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP ++ +H+ +V +MGNPHA+ V+ D+ D+ Sbjct: 122 KPRFEPAEIPFTPKAITKIQNAYHLDVEGTPV--QLYVANMGNPHAVIKVD-DILTADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 179 KLGGAIESHPAFPEKVNVGFVQVMNQRHIRLRVYERGVGETQACGTGACAAVATGIREGW 238 Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + ++ GG LLI W V MTG +EG Sbjct: 239 LDEGEEIRAQLYGGSLLIRWSPGYSVMMTGPTAFVYEGVF 278 >gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1] gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1] Length = 274 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021] gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021] Length = 274 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|258543519|ref|YP_003188952.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01] gi|256634597|dbj|BAI00573.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01] gi|256637653|dbj|BAI03622.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-03] gi|256640707|dbj|BAI06669.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-07] gi|256643762|dbj|BAI09717.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-22] gi|256646817|dbj|BAI12765.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-26] gi|256649870|dbj|BAI15811.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-32] gi|256652860|dbj|BAI18794.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655914|dbj|BAI21841.1| diaminopimelate epimerase [Acetobacter pasteurianus IFO 3283-12] Length = 270 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 100/277 (36%), Positives = 140/277 (50%), Gaps = 15/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +++D R H ++T I AL+ DQ++ + D F+R Sbjct: 5 FRKMHGLGNDFVILDERNGHLSLTPARIAALAHRRRGIGCDQLVTLRPACAEGADVFVRF 64 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSE +CGN RCV + ++ +T G L A+ +G I+VDMGEP L+ Sbjct: 65 FNPDGSEAGACGNASRCVADLIWRETGNRTPVLQTRAGRLPARIEENGLITVDMGEPRLN 124 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ +PLA D + +P SMGNPHA FF + + S G+ Sbjct: 125 WQDVPLAAEMDTLHL----------PLEGDPAAASMGNPHATFF----VEDFVRLSQGHA 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+ AR+ + L+ ERG G+T ACGS ACA+VV + R Sbjct: 171 LEHDPLFPERANIGFARIDGPARMRLKVHERGAGVTEACGSGACAAVVNAARRGLIGRVC 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V++ GG L IEW NNHV MTG A +EG +D+ Sbjct: 231 EVELDGGVLRIEWAANNHVLMTGSATTAFEGTVDLAA 267 >gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 276 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F+KM G+GN +VID + + + I L+ FDQ++++ D D Sbjct: 3 VQFSKMHGLGNDFMVIDNVTQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + + R T G +V +DG ++V+MG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKQKGLINRNKIVVSTKAGKMVLYLEKDGQVTVNMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IPL + + SMGNPH + V+ D+ ++A Sbjct: 123 PEFEPANIPLKAN-----KQENTYILRVGESTLFIGAASMGNPHCVMEVD-DVDTANVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ KH FSEGVN+ ++ + + LR +ERG G T ACGS ACA+V K Sbjct: 177 IGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIGQIQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++V MTG A+ ++G +++ Sbjct: 237 SKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276 >gi|270264255|ref|ZP_06192522.1| diaminopimelate epimerase [Serratia odorifera 4Rx13] gi|270041904|gb|EFA15001.1| diaminopimelate epimerase [Serratia odorifera 4Rx13] Length = 274 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + + H L VVSMGNPH + V+ D+ + Sbjct: 121 PNFDPQAVPFRATKE---ERTYIMRAAEHTVLCG--VVSMGNPHCVLQVD-DVKTAKVEL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLEGHERFPERANIGFMQIVSREHIKLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++ GG L I W N +FMTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDGFIHL 274 >gi|283787514|ref|YP_003367379.1| diaminopimelate epimerase [Citrobacter rodentium ICC168] gi|282950968|emb|CBG90645.1| diaminopimelate epimerase [Citrobacter rodentium ICC168] Length = 274 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 132/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPSQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVLQVD-NVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGTGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 ADEVRVELTGGRLDIVWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|238763613|ref|ZP_04624573.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638] gi|238698091|gb|EEP90848.1| Diaminopimelate epimerase [Yersinia kristensenii ATCC 33638] Length = 274 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFDPQAVPFRA---TKAEKTYIFRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE] gi|166224259|sp|A5UDX5|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE] Length = 274 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VS+GNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSIGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846] Length = 274 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|332159816|ref|YP_004296393.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607641|emb|CBY29139.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664046|gb|ADZ40690.1| diaminopimelate epimerase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862563|emb|CBX72717.1| diaminopimelate epimerase [Yersinia enterocolitica W22703] Length = 274 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFEPQSVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAIGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 GEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|121587735|ref|ZP_01677496.1| diaminopimelate epimerase [Vibrio cholerae 2740-80] gi|121728312|ref|ZP_01681343.1| diaminopimelate epimerase [Vibrio cholerae V52] gi|147673333|ref|YP_001218293.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|153214851|ref|ZP_01949659.1| diaminopimelate epimerase [Vibrio cholerae 1587] gi|153803077|ref|ZP_01957663.1| diaminopimelate epimerase [Vibrio cholerae MZO-3] gi|153818937|ref|ZP_01971604.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457] gi|153830024|ref|ZP_01982691.1| diaminopimelate epimerase [Vibrio cholerae 623-39] gi|161582035|ref|NP_229784.2| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229508404|ref|ZP_04397908.1| diaminopimelate epimerase [Vibrio cholerae BX 330286] gi|229508915|ref|ZP_04398405.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|229515839|ref|ZP_04405297.1| diaminopimelate epimerase [Vibrio cholerae TMA 21] gi|229517029|ref|ZP_04406475.1| diaminopimelate epimerase [Vibrio cholerae RC9] gi|229520082|ref|ZP_04409510.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80] gi|229606677|ref|YP_002877325.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236] gi|255743921|ref|ZP_05417876.1| diaminopimelate epimerase [Vibrio cholera CIRS 101] gi|262151160|ref|ZP_06028299.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1] gi|262167029|ref|ZP_06034746.1| diaminopimelate epimerase [Vibrio cholerae RC27] gi|262190132|ref|ZP_06048418.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93] gi|21362496|sp|Q9KVL6|DAPF_VIBCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|172047519|sp|A5F4I6|DAPF_VIBC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121548034|gb|EAX58112.1| diaminopimelate epimerase [Vibrio cholerae 2740-80] gi|121629442|gb|EAX61871.1| diaminopimelate epimerase [Vibrio cholerae V52] gi|124115094|gb|EAY33914.1| diaminopimelate epimerase [Vibrio cholerae 1587] gi|124121396|gb|EAY40139.1| diaminopimelate epimerase [Vibrio cholerae MZO-3] gi|126510499|gb|EAZ73093.1| diaminopimelate epimerase [Vibrio cholerae NCTC 8457] gi|146315216|gb|ABQ19755.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|148874509|gb|EDL72644.1| diaminopimelate epimerase [Vibrio cholerae 623-39] gi|229342870|gb|EEO07860.1| diaminopimelate epimerase [Vibrio cholerae TM 11079-80] gi|229346092|gb|EEO11064.1| diaminopimelate epimerase [Vibrio cholerae RC9] gi|229347102|gb|EEO12063.1| diaminopimelate epimerase [Vibrio cholerae TMA 21] gi|229354032|gb|EEO18965.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|229354677|gb|EEO19599.1| diaminopimelate epimerase [Vibrio cholerae BX 330286] gi|229369332|gb|ACQ59755.1| diaminopimelate epimerase [Vibrio cholerae MJ-1236] gi|255738404|gb|EET93794.1| diaminopimelate epimerase [Vibrio cholera CIRS 101] gi|262024547|gb|EEY43231.1| diaminopimelate epimerase [Vibrio cholerae RC27] gi|262031054|gb|EEY49679.1| diaminopimelate epimerase [Vibrio cholerae INDRE 91/1] gi|262033986|gb|EEY52440.1| diaminopimelate epimerase [Vibrio cholerae CT 5369-93] Length = 276 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274 >gi|238789381|ref|ZP_04633167.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641] gi|238722524|gb|EEQ14178.1| Diaminopimelate epimerase [Yersinia frederiksenii ATCC 33641] Length = 274 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFDPQTVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPELESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp. lyrata] Length = 362 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 137/288 (47%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 ++ ++ F K G+GN +++D R + IT + L D ++ + Sbjct: 74 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + + SFT T G++V + DG + Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMG PIL + +P + V N VSMGNPH I F + Sbjct: 193 KVDMGTPILKAQDVPTKLPGN-KGEAVVQAELVVDGESWNVTCVSMGNPHCITFGKKGGP 251 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +L G +H MF N V S L +R WERG G T ACG+ ACA Sbjct: 252 NLKVDDLNLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWERGAGATLACGTGACA 311 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359 >gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827] gi|188020072|gb|EDU58112.1| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827] Length = 278 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 134/285 (47%), Gaps = 11/285 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M+ +M F+KM G+GN +V+D + + + I+ L+ FDQ++L+ D Sbjct: 1 MERNM-QFSKMHGLGNDFMVVDGVTQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPD 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D RI N DGSEV CGNG RC RF+ + ++ T G +V N + + Sbjct: 60 LDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMVLTINENDDVC 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEP + + +P + + VVSMGNPH + VE + Sbjct: 120 VNMGEPEFEPQKVPF-----RAIKAEKTYIIRALERTVLCGVVSMGNPHCVIQVE-SVKT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G +L H F E N+ + S + LR +ERG G T ACGS ACA+V Sbjct: 174 AEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACAAVAIGI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V V + GG L I W+ ++MTG A ++G + + Sbjct: 234 QQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278 >gi|297581833|ref|ZP_06943754.1| diaminopimelate epimerase [Vibrio cholerae RC385] gi|297533927|gb|EFH72767.1| diaminopimelate epimerase [Vibrio cholerae RC385] Length = 290 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 18 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 78 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 137 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I L VSMGNPH + V+ D+ + + Sbjct: 138 EFEPNKIPF----RAKQSEKTYILRAGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 191 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 192 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 251 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 252 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288 >gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont] Length = 274 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 129/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +PL + ++ VSMGNPH + VE + + + Sbjct: 121 PNFDPQQVPL-----RANKAENLYLQRVAEQTVMFGAVSMGNPHCVIQVE-SVKTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ V + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACGIQQGIL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G + + Sbjct: 235 AVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274 >gi|260428165|ref|ZP_05782144.1| diaminopimelate epimerase [Citreicella sp. SE45] gi|260422657|gb|EEX15908.1| diaminopimelate epimerase [Citreicella sp. SE45] Length = 279 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 101/289 (34%), Positives = 150/289 (51%), Gaps = 19/289 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G+GN +V+D R +T + A++ FDQ+ LI + D Sbjct: 8 SDTLPFMKMHGLGNDFVVLDGRAQTMRLTPSLVRAIADRHRGVGFDQLALIEP---GAGD 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A + N DGS +CGN RC+ R+L + R T T RG L+A++ G SV+MG Sbjct: 65 ARLTFYNADGSTAGACGNATRCIARYLMDKTGRDRLTLVTERGALLAEDAGAGLTSVNMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW IPLAR D ++ P MGNPH FFVE D DL Sbjct: 125 QPQLDWHEIPLAREMDTLEL----------PIDGAPTATGMGNPHCTFFVE-DAEAVDLT 173 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 SFG + HP++ E N+ +A + + + +R WERG GLT A GS++CA+ VA+ Sbjct: 174 SFGPVHEHHPLYPERTNVQVASIIGPDHIRMRVWERGAGLTLASGSSSCATAVAAARRGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R V++++ GG L ++W ++ V+MTG ++G + W++ Sbjct: 234 TGRKVTIELDGGTLQVDWREDG-VWMTGGTAHVFDGSF---SRAWLEAA 278 >gi|118591329|ref|ZP_01548727.1| diaminopimelate epimerase [Stappia aggregata IAM 12614] gi|118436001|gb|EAV42644.1| diaminopimelate epimerase [Stappia aggregata IAM 12614] Length = 303 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 123/296 (41%), Positives = 169/296 (57%), Gaps = 5/296 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M S F KM G+GN +V D R + +AI AL FDQ++ + Sbjct: 1 MASETRPFLKMNGLGNDFVVWDARENPLRLAPEAIAALGDRETGIGFDQMITVERS-SLG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-NRDGSISV 118 VDAF+RI N DGSEV +CGN RC+ R L + T ET G+L A + + S++V Sbjct: 60 VDAFMRIHNRDGSEVSACGNATRCIGRLLMEEAGKDLVTIETGAGLLHAFDADGPRSVTV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L W IPLA F IGP++ L P VV+MGNPHAIF+V+ D+ Y Sbjct: 120 DMGVPRLAWNEIPLAEEFADTRAIELQIGPIDDPILHTPAVVNMGNPHAIFWVD-DVEAY 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L G LL HP+F E N+S+A V + + ++ WERGVGLT ACG+AACA VA+ Sbjct: 179 ELERVGPLLEHHPIFPEYANISLAHVFDTDQIRVKVWERGVGLTLACGTAACAVGVAAAR 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 +T+R ++ + GG + IEW + +NHV M+G + E+EG++D+ T W K D Sbjct: 239 DGRTSRKTTIHLPGGPIGIEWRESDNHVLMSGLTEVEFEGEVDLDTLAWRKTAAGD 294 >gi|153822333|ref|ZP_01975000.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|153826286|ref|ZP_01978953.1| diaminopimelate epimerase [Vibrio cholerae MZO-2] gi|227080362|ref|YP_002808913.1| diaminopimelate epimerase [Vibrio cholerae M66-2] gi|254291935|ref|ZP_04962716.1| diaminopimelate epimerase [Vibrio cholerae AM-19226] gi|254851510|ref|ZP_05240860.1| diaminopimelate epimerase [Vibrio cholerae MO10] gi|298501106|ref|ZP_07010906.1| diaminopimelate epimerase [Vibrio cholerae MAK 757] gi|9654526|gb|AAF93303.1| diaminopimelate epimerase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520159|gb|EAZ77382.1| diaminopimelate epimerase [Vibrio cholerae B33] gi|149739954|gb|EDM54133.1| diaminopimelate epimerase [Vibrio cholerae MZO-2] gi|150422145|gb|EDN14111.1| diaminopimelate epimerase [Vibrio cholerae AM-19226] gi|227008250|gb|ACP04462.1| diaminopimelate epimerase [Vibrio cholerae M66-2] gi|227011872|gb|ACP08082.1| diaminopimelate epimerase [Vibrio cholerae O395] gi|254847215|gb|EET25629.1| diaminopimelate epimerase [Vibrio cholerae MO10] gi|297540140|gb|EFH76201.1| diaminopimelate epimerase [Vibrio cholerae MAK 757] Length = 290 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 18 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 78 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 137 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 138 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 191 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 192 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 251 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 252 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 288 >gi|262163684|ref|ZP_06031425.1| diaminopimelate epimerase [Vibrio mimicus VM223] gi|262027900|gb|EEY46564.1| diaminopimelate epimerase [Vibrio mimicus VM223] Length = 290 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 18 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 78 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 137 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I L VSMGNPH + V+ D+ + + Sbjct: 138 EFEPSKIPF----RAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVVD-DIRAAAVETL 191 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 192 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 251 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 252 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 288 >gi|229525022|ref|ZP_04414427.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426] gi|229338603|gb|EEO03620.1| diaminopimelate epimerase [Vibrio cholerae bv. albensis VL426] Length = 276 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 136/277 (49%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V V + GG L I W + ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEIHWQGPSKPLYMTGPATHIYDGQI 274 >gi|325266086|ref|ZP_08132772.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394] gi|324982724|gb|EGC18350.1| diaminopimelate epimerase [Kingella denitrificans ATCC 33394] Length = 283 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + + F+KM G+GN +VID + I A + FDQ++L+ VD Sbjct: 2 TTLKFSKMHGLGNDFMVIDGTRQTFRPDAAQIQAWADRHTGIGFDQLLLVEKTDTPDVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC V+F++ +++ ET RGI+ N +G I+V+M Sbjct: 62 RYRIFNADGGEVEQCGNGARCFVKFVSEHGLTDKRTIRVETARGIIEPSLNDNGLITVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P + +P + ++ VN L ++SMGNPHA+ VE D + Sbjct: 122 GQPQFAPQDVPFVLRSGEQAGEK-SYIVVNELDSAQMSLLSMGNPHAVMLVE-DTASAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G L HP F VN+ +V + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 AEWGAALQNHPRFPARVNVGFMQVVDAHHIRLRVFERGSGETQACGTGACAAVVSGVRWG 239 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V+MTG A +EG+L Sbjct: 240 LLAAGEDVRVSLPGGDLYIRWAEGEPVWMTGPAVTVFEGEL 280 >gi|144897540|emb|CAM74404.1| Diaminopimelate epimerase [Magnetospirillum gryphiswaldense MSR-1] Length = 280 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 102/274 (37%), Positives = 150/274 (54%), Gaps = 8/274 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D+R +T A++ DQ+++I + DA++ Sbjct: 8 PFLKMHGLGNDFVVVDVRRSGFVLTPAMARAIADRRTGLGCDQVVVIETARSGLSDAWMS 67 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DGS +CGN RCV L + ET G+L A+ D ++VDMG L Sbjct: 68 LWNADGSVTSACGNATRCVAWLLMQQAGSDHAVIETKAGLLDAEMRGDKLVAVDMGPARL 127 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPLA+ D + + L +P VSMGNPHA+FFV+ D+ DLA+ G Sbjct: 128 DWREIPLAKPVDTL------HMGIGIGSLTDPVGVSMGNPHAVFFVD-DVAAIDLAALGP 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L H +F E N+ +A+V + + + +R WERG G+T+ACG+ ACA++VA+ T R Sbjct: 181 VLEHHDLFPERANIEVAQVLAPDRIRMRVWERGTGITSACGTGACATLVAAARRGLTARK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + GG L IEW ++HV MTG EG+L Sbjct: 241 ADVVLDGGVLTIEWLPDDHVMMTGPVALVAEGRL 274 >gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003] gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003] Length = 277 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 98/275 (35%), Positives = 137/275 (49%), Gaps = 17/275 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R + +T AL FDQ+ +I + D + Sbjct: 11 LRFLKMHGLGNDFVVIDARSGENPVTPALARALGDRHRGVGFDQLAVILPAE--GADFTL 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ +CGN RCV + + + T T RG L A+ DG +SV+MG PI Sbjct: 69 EFWNSDGSKAGACGNATRCVSDLMMRDLGKDRVTLTTARGRLSAERRADGLVSVNMGAPI 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LD IP+A P+ +P V MGNPH +FFVE D D++ G Sbjct: 129 LDPAAIPVAAD------------PLALPLTGDPVAVGMGNPHCVFFVE-DAETADVSGLG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + HP+F E N+ A + + L +R WERG G+T ACGS CA+ VA+ T R Sbjct: 176 PKIEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAHLRGLTGR 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I+W ++ V+MTG + +L Sbjct: 236 RVIVDVDGGRLEIDWREDG-VWMTGPTALVFAAEL 269 >gi|15231841|ref|NP_190926.1| diaminopimelate epimerase family protein [Arabidopsis thaliana] gi|75263858|sp|Q9LFG2|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana] gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana] gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana] gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana] Length = 362 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 137/288 (47%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 ++ ++ F K G+GN +++D R + IT + L D ++ + Sbjct: 74 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 132 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + + SFT T G++V + DG + Sbjct: 133 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 192 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMG PIL + +P S + V N VSMGNPH I F + Sbjct: 193 KVDMGTPILKAQDVPTKLSGN-KGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 251 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +L G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 252 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 311 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 312 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 359 >gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 279 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 148/279 (53%), Gaps = 8/279 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN ++ID + AI+ + DQ++L++ Q A D + Sbjct: 4 INFVKMHGLGNDFILIDCLKNDLPKPQEFAIHYCNRRFGIGADQLLLLYPSQIA--DFKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMGEP 123 +I N DGSEV+ CGNG+RC +++ R E + K + G + VDMG+P Sbjct: 62 KIFNADGSEVEMCGNGIRCFAKYIWDRGLSNKDVLEVETLAGIIKPKKVGELVQVDMGKP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP+ D + + VSMGNPHA+ F++++ ++ + + Sbjct: 122 EFHPNKIPVDVEGDSAFDLMLEVSGWHARIN----CVSMGNPHAVIFLDEEPKNFAVTKY 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ HP+F + N+ A V + + +R WERG G T ACG+ ACA+ VA+ TN Sbjct: 178 GPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAMVKEFTN 237 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V+V +LGG LLIEW + HV+MTG A++ +EG + + Sbjct: 238 KKVTVHLLGGDLLIEWAADGHVYMTGPAQEVFEGVVKVP 276 >gi|238760179|ref|ZP_04621326.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236] gi|238701615|gb|EEP94185.1| Diaminopimelate epimerase [Yersinia aldovae ATCC 35236] Length = 274 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFDPQTVPFKA---IKAERTYIFRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 SEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT] gi|122945419|sp|Q0I572|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT] Length = 274 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 144/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + +K T +G ++ + D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVVLKGLTDKKEIAVSTAKGKMMLRVKDDDMVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + +K +++ + L VVSMGNPH + VE D+ H ++ Sbjct: 121 PIWEPNKIPF--NANKFEKNYIIRTDIQTLLCG---VVSMGNPHCVTQVE-DIQHANIEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTGEA ++G + + Sbjct: 235 DNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274 >gi|258622842|ref|ZP_05717859.1| diaminopimelate epimerase [Vibrio mimicus VM573] gi|258584903|gb|EEW09635.1| diaminopimelate epimerase [Vibrio mimicus VM573] Length = 276 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHVYDGQI 274 >gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541] gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541] Length = 278 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I FDQ++L+ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G + N + + V+MGE Sbjct: 65 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VVSMGNPH + VE + ++ Sbjct: 125 PEFEPQKVPF-----RAVKEEKTYIIRAQERTVLCGVVSMGNPHCVVQVE-SVQTAEVEV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ + S E + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACAAVAVGIGQGLL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 ++ V V + GG L I W ++MTG A ++G + I Sbjct: 239 SKRVRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278 >gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976] gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976] Length = 279 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 6 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPDLDFHY 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G ++ + + V+MGE Sbjct: 66 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMILTLKGEEKVRVNMGE 125 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 126 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DIKTAPVNE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 180 LGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 240 DSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDGFIKL 279 >gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H] gi|81557036|sp|Q5FQZ4|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H] Length = 257 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 100/274 (36%), Positives = 135/274 (49%), Gaps = 22/274 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R + + I L DQ++L+ A D + Sbjct: 3 LSFTKMHGLGNDFVVIDGRQNDPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADVHV 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 R N DGSE +CGN RCV +F+ T +T G L+ +VDMG P Sbjct: 63 RFFNPDGSEAGACGNASRCVAKFVGGA-----PTLQTAAG-LLPTAQDGDLFTVDMGTPR 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ +PL+R+ D + HL L + SMGNPHA F + + G Sbjct: 117 LDWQDVPLSRACDTL-----------HLPLHDAAACSMGNPHATLFG----DAFRAEALG 161 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L + P+F E N+ A++ S + LR WERG GLT ACGS ACA+VV + T R Sbjct: 162 PGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNAVRRGLTER 221 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V M GG L I W ++ HVFMTG A + G Sbjct: 222 TCTVTMDGGDLRITWREDGHVFMTGPAVTVFHGT 255 >gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 407 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 138/293 (47%), Gaps = 15/293 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 S +DF K +G+GN ++ID R ++S+A + D ++ DAS Sbjct: 116 SRTIDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASE 175 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D +R+ N DGSE + CGNG+RC+ RF++ M K + T+ G++ + DG ++V Sbjct: 176 DYSMRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKKYKVGTLAGLIQPEMRADGQVAV 235 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-------- 170 DMG PI + +P + D VSMGNPH I F Sbjct: 236 DMGMPIFEPSEVPTTLAA-TQDGKVVRAEMDVDGEKWLVNAVSMGNPHCITFGRAGGEAD 294 Query: 171 -VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 L + L+ G HP F N +V + + + WERG G T ACG+ A Sbjct: 295 GPGLKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACGTGA 354 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA+VVA + +R +V++ GG L IEW + + + MTG A+ + GK + Sbjct: 355 CATVVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGKYFL 407 >gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1] gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 7/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D +++ ++ DQ++++ + VD Sbjct: 3 IKFTKMHGAGNDFVVLDAINQSISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R V+F+T + +++ ET+ G++ + DG I+VDMG Sbjct: 63 RIYNADGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGVIEPRLEDDGQITVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 PIL +P + + VVSMGNPHA+ VE D + Sbjct: 123 PILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQVVE-DSEAAPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L+ +H F + VN +V ++LR +ERG G T ACG+ ACA+VVA Sbjct: 182 LSEGPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAVVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 + V+V+ GG L I W V MTG A +EG++++ Sbjct: 242 LLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIELP 284 >gi|33151302|ref|NP_872655.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP] gi|71153321|sp|Q7VPN0|DAPF_HAEDU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33147522|gb|AAP95044.1| diaminopimelate epimerase [Haemophilus ducreyi 35000HP] Length = 274 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF++ + + R T +G +V + ++ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVSLKGLINRSDMYVSTAKGKMVLTLVDEENVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + L VVSMGNPH + V+ D+ + Sbjct: 121 PIWEPAKIPF-----IANKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVD-DIEQATVHQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL KH F E N+ ++ + LR +ERGVG T ACGS ACA+V Sbjct: 175 LGALLEKHHRFPERANVGFMQIIDRHHIKLRVFERGVGETKACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW ++MTG A ++G + + Sbjct: 235 DANVQVSLPGGTLQIEWQGKGKPLYMTGTATHIYDGFIKL 274 >gi|149191482|ref|ZP_01869731.1| diaminopimelate epimerase [Vibrio shilonii AK1] gi|148834670|gb|EDL51658.1| diaminopimelate epimerase [Vibrio shilonii AK1] Length = 276 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPDLIRRLADRHTGVGFDQLLIVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + S + T +G +V K + ++V+MG+P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVQMKGLTNKYSVSVSTKKGKMVLKLEENDLVTVNMGQP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH + V+ D+ Sbjct: 124 EFEPNKIPFKAK----QKEKTYILRAGEHTLFCG-AVSMGNPHVVTVVD-STEEADVDRL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRHEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V+V + GG L I W H + MTG A ++G++ Sbjct: 238 ENVTVHLPGGDLKISWKGEGHPLTMTGPATHVFDGQI 274 >gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472] gi|81655424|sp|Q7NV18|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472] Length = 276 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID ++T + I L FDQ++L+ ++A D Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQTVSLTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC +F+ + + ET RG++ + DG VDMG Sbjct: 63 RIFNNDGGEVEQCGNGARCFAKFVRDQGLTGKSRIEVETARGVIAPEYLGDGLARVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P +P + + + + SMGNPHA+ V+ D+ +A Sbjct: 123 PRFRPADLPFLADAEALTYSLPLPEGRCEIGI-----ASMGNPHAVQRVD-DVDAAPVAE 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F + VN ++ + + LR +ERG G T ACG+ ACA+VV Sbjct: 177 VGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCGIRQGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V GG ++IEW V MTG A ++G++++ Sbjct: 237 DARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276 >gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131] gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131] Length = 278 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 129/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I FDQ++L+ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G + N + + V+MGE Sbjct: 65 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VVSMGNPH + VE ++ ++ Sbjct: 125 PDFEPQRVPF-----RAVKEEKTYIIRAQERTVLCGVVSMGNPHCVIQVE-SIHTAEVEV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ + S + + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACAAVAVGITQGLL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I W ++MTG A ++G + + Sbjct: 239 AKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278 >gi|298369275|ref|ZP_06980593.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314] gi|298283278|gb|EFI24765.1| diaminopimelate epimerase [Neisseria sp. oral taxon 014 str. F0314] Length = 282 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 139/284 (48%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID ++A S FDQ++L+ Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDGINQTFEPKEAPLSAWSDRFRGVGFDQLLLVERPSSEL 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV CGNG RC VRF+T + +K ET G++V + +G ++ Sbjct: 59 VDFRYRIFNADGGEVGQCGNGARCFVRFVTDKGLTDKKEILVETAGGVIVPRLLENGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP D D + L V+MGNPHA+ VE D Sbjct: 119 VNMGQPRFMPSEIPFVPDSG-EDSDALTHIILVGLESVPVSCVNMGNPHAVIIVE-DTET 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +G + H F E VN+ ++ + + LR +ERG G T ACG+ ACA+VVA Sbjct: 177 APVGQWGEAIESHEQFPERVNVGFMQIINRREIRLRVYERGTGETQACGTGACAAVVAGV 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + +V V + GG L I W V MTG A+ +EG+L Sbjct: 237 RLGLLDAGESVKVMLPGGDLFISWAPEGGVMMTGPAETVFEGEL 280 >gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|229807483|sp|B3GYL3|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 274 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 274 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|238793578|ref|ZP_04637202.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909] gi|238727168|gb|EEQ18698.1| Diaminopimelate epimerase [Yersinia intermedia ATCC 29909] Length = 274 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVTEDELVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + +P + + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PNFDPQTVPFRA---TKAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVSREQIRLRVYERGAGETQACGSGACAAVAVGIQQELL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEEVHVELPGGSLHISWKGPGHPLYMTGPATHVYDGFIHL 274 >gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Oceanospirillum sp. MED92] gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92] Length = 280 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 135/281 (48%), Gaps = 6/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +V F KM G+GN +V+D+ +T + L FDQ++++ + +D Sbjct: 2 LVRFTKMHGLGNDFMVLDLVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV++CGNG RC +F+ + + +T G + K + D + V+MG Sbjct: 62 YRIFNQDGSEVENCGNGARCFAKFVRDKRLTGKSEVVVQTANGQMTLKIHPDKRVEVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL +P + +SMGNPH + V+ + + Sbjct: 122 APILAPVDVPFQADQKATTYAIDVPLSQGDQQVELS-AISMGNPHGVLIVD-STENAPVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L H F N+ +V S ++LR +ERGVG T ACG+ ACA+VVA Sbjct: 180 TLGPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVAGKLRGV 239 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V+V + GG L IEWH + V MTG A +EG++ + Sbjct: 240 LDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQIFV 280 >gi|307132971|ref|YP_003884987.1| diaminopimelate epimerase [Dickeya dadantii 3937] gi|306530500|gb|ADN00431.1| diaminopimelate epimerase [Dickeya dadantii 3937] Length = 274 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 133/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDINVSTHNGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + H L VSMGNPH + V+ ++ + + Sbjct: 121 PNFEPQQVPFRAA---KPEKTYILRAAEHTVLCG--AVSMGNPHCVIQVD-NVDTAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLESHERFPERANVGFMQVVNSGLIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H +FMTG A ++G + + Sbjct: 235 AADVKVQLPGGELEIHWDGPGHPLFMTGPATHVYDGFMHL 274 >gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 274 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1] gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1] Length = 286 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 8/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC R++ + + +T+ G++ + + DG ++VDMG+ Sbjct: 63 VIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDMGQ 122 Query: 123 PILDWKLIPLARSF---DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+L+ L+P + + + + VSMGNPHA+ V+ D+ H Sbjct: 123 PVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAPVSMGNPHAVQLVD-DVDHAP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A++G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 VATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAGIRW 241 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L IEW D V MTG A+ +EG++++ Sbjct: 242 GLLDARVDVHTRGGRLTIEW-DGGAVRMTGPAEFVFEGQIEVP 283 >gi|255636095|gb|ACU18392.1| unknown [Glycine max] Length = 359 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + A+ + D ++ + + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPG-ISG 129 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F+ + R SFT T G+++ + DG++ Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171 VDMGEPIL +P + D V + + VSMGNPH + F Sbjct: 190 RVDMGEPILKASDVPTKLHAN-KDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L + WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator MP104C] gi|229807496|sp|B1I545|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator MP104C] Length = 278 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ G D+ + A D ++L+ A+ D Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPS--AAADLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGILVAKENRDGSISV 118 +R+ N DGSE + CGN +RCV + + + + T + + + ++ V Sbjct: 59 MRVFNPDGSEPEMCGNAIRCVALYARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+ IP+ + + G + + VSMGNPH + F DL Sbjct: 119 DMGRPRLERAEIPMRGPAGPVVGEVLDAGERSFM----VTAVSMGNPHCVVF-GADLDDA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +G LL HP F N+ V S + +R WERGVG T ACG+ ACA VA Sbjct: 174 GFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAVAGVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 +T R V V++ GG LLIEW D+ V+M+G A++ ++GK Sbjct: 234 TGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGKW 275 >gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate Epimerase Length = 274 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV GNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|325982879|ref|YP_004295281.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] gi|325532398|gb|ADZ27119.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] Length = 275 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +V+D N+ I L+ DQ++L+ + D Sbjct: 3 LKFTKMQGLGNDFVVVDGINQTVNLDRQQIRHLADRHFGIGCDQLLLVEKAE-GQADFRY 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VR++ + ET+ G++ + +G+I+V+MG+ Sbjct: 62 RIFNADGGEVEQCGNGARCFVRYVHDHGLTQNSEIRIETLSGVISPRLENNGNITVNMGK 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + + IP + +SMGNPHA+ V D+ +A+ Sbjct: 122 PIFEPERIPFIADQCALTYQLELPDSP-----VTICALSMGNPHAVRVV-TDIARAPVAT 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ +H F VN+ +V + LR +ERG G T ACG+ ACA+VVA L Sbjct: 176 EGALIEQHWRFPNKVNVGYLQVIDRNHIKLRVFERGAGETLACGTGACAAVVAGITLGLL 235 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V V GG L I W V+MTG A +EG++++ Sbjct: 236 DRQVVVSTQGGELTISWQGYGEPVWMTGPAVTVFEGEINL 275 >gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG] gi|166224260|sp|A5UHQ4|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG] Length = 274 Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM 30120] gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM 30120] Length = 278 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 127/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I FDQ++L+ D +D Sbjct: 5 LQFSKMHGLGNDFMVVDGVTQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G + N + + V+MGE Sbjct: 65 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + VVSMGNPH + V+ ++ ++ Sbjct: 125 PDFEPQNVPF-----RAVKAEKTYIIRAQERTVFAGVVSMGNPHCVVQVD-NVQTAEVEV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ V S + + LR +ERG G T ACGS ACA+V Sbjct: 179 LGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAAVAVGVGQGLL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W ++MTG A ++G + I Sbjct: 239 ANRVRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278 >gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202] gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202] Length = 274 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDGVTQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V +G + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQIPFTA-----NKFEKNYILRTSLQTVLCGVVSMGNPHCVLQVE-DIKTAPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 235 DSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDGFVTL 274 >gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa] gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa] Length = 281 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 139/283 (49%), Gaps = 9/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F K G+GN +++D R + IT + L D ++ D Sbjct: 1 LHFVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPG-INGTDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC RF+ K+ SF+ T G++V + DG + VD Sbjct: 60 MRIFNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEP+L +P + +K D V N VSMGNPH + F + + + Sbjct: 120 MGEPVLKAADVPTKLAANKNDA-VVKSELVVDGVTWNVTCVSMGNPHCVTFGDLQVDSLN 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA G H +F N +V S L +R WERG G T ACG+ ACA+VVA+ Sbjct: 179 LAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAAVLE 238 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 R +V + GG L IEW ++NHV+MTG A+ ++G + + Sbjct: 239 GNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281 >gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718] gi|81584626|sp|Q82U84|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718] Length = 275 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 130/280 (46%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++ I FDQ++++ ++ D Sbjct: 3 LKFTKMHGLGNDFIVIDAINQSVSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRY 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + T ET GI++ +G +SVDMG Sbjct: 62 RIFNADGGEVEQCGNGARCFARFVRDHDLTRKNTIRVETACGIIMPTVEENGEVSVDMGI 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D IP + VSMGNPHA+ V D+ + S Sbjct: 122 PRFDPARIPF-----ITQERALTYPLNVNDREIEISAVSMGNPHAVQIV-PDIDLAPVTS 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F E VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 176 EGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAVVSGISRGLL 235 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V V M GG L I W ++ V+MTG A +EG +D+ Sbjct: 236 DSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275 >gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae L20] gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|166224236|sp|A3N2H9|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 274 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810] Length = 274 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + + + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKNDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V +LGG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894] gi|166224257|sp|A7MQK2|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894] Length = 274 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + D I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V N D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + L+P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PVFEPSLVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVATAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E N+ +V + E + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W N +FMTG A ++G + + Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274 >gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110] gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110] Length = 286 Score = 235 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R + + +AI D ++ D + D Sbjct: 1 MEFTKYQGLGNDFILVDNRHNAIPLLSSKEAIKLCDRHFGIGADGVIFALPG-DENTDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF KS+ +T+ GI++ + DG + VD Sbjct: 60 MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEEDGQVKVD 119 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L K IP L + +K+ +G + + VSMGNPH I FV+ ++ Sbjct: 120 MGNPFLLAKEIPTTLTKGEEKVVNQFLEVGGQS----WSVTCVSMGNPHCITFVD-NVAT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G + H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 175 IPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + +N ++MTG A+ + G + Sbjct: 235 LTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVM 277 >gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1] gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1] Length = 274 Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTAN-----KFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS A A+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|261210167|ref|ZP_05924464.1| diaminopimelate epimerase [Vibrio sp. RC341] gi|260840707|gb|EEX67256.1| diaminopimelate epimerase [Vibrio sp. RC341] Length = 276 Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + VE D+ + + Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVE-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWQGPGKPLYMTGPATHIYDGQI 274 >gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881] gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881] Length = 282 Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 132/284 (46%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + F KM G+GN +VID + +D I L FDQ++++ + A Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSAD 62 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI+N DGSEV CGNG RC RF+ + ++ ET G + D ++ Sbjct: 63 ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKREIQVETAAGQMTLTVTDDEQVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P IP+ + V+ V +GNPH VE ++ + Sbjct: 123 VDMGAPRWAPDAIPMTAKAEAD-----SYFLVSGTQAWEVGAVGLGNPHCTLLVE-NVDN 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G LL H F E VN+ ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 177 APVESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + AV+V + GG L + + + MTG A ++G ++I Sbjct: 237 RRGWLDAAVTVHLPGGTLQVCYDGQGGIQMTGPASHVYDGAIEI 280 >gi|146313615|ref|YP_001178689.1| diaminopimelate epimerase [Enterobacter sp. 638] gi|167012036|sp|A4WG08|DAPF_ENT38 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145320491|gb|ABP62638.1| diaminopimelate epimerase [Enterobacter sp. 638] Length = 274 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 130/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDICVSTANGRMILSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + + VVSMGNPH + V+ D+ + Sbjct: 121 PNFEPSAVPF-----RAIKAEKTYIMRASEQTVLCGVVSMGNPHCVIQVD-DVDTAAVEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPIMESHERFPERANIGFMQVMKREHIRLRVYERGAGETRACGSGACAAVAVGISQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H +FMTG A ++G + + Sbjct: 235 AEEVRVELPGGRLDIAWKGPGHPLFMTGPAAHVYDGFIHL 274 >gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium] Length = 276 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 137/282 (48%), Gaps = 11/282 (3%) Query: 5 MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 M+ F KM+GIGN +V+D + I+ L+ FDQ+++I Q D Sbjct: 1 MIVPFTKMQGIGNDFMVVDAISQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSE CGNG R V +++ + ++ T + +G I+++M Sbjct: 61 HFRIFNADGSEAGHCGNGARAVAKYVRQKGLTWKRELRLSTNTATMNTVMEDNGLITINM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L+ + IPL + ++ + + VSMGNPH + VE D+ + Sbjct: 121 GKPRLEPEKIPL----RFAQQSETYMIDAEGIRYKIG-AVSMGNPHCVLQVE-DIDKAAV 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G +L+ H F N+ +V + LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 GKVGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVAGRLQK 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I W V+MTG AK +EG++D+ Sbjct: 235 ILDEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQIDV 276 >gi|83309314|ref|YP_419578.1| diaminopimelate epimerase [Magnetospirillum magneticum AMB-1] gi|82944155|dbj|BAE49019.1| Diaminopimelate epimerase [Magnetospirillum magneticum AMB-1] Length = 301 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 102/286 (35%), Positives = 150/286 (52%), Gaps = 13/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M F KM G+GN +V+D R ++T + + A+++ DQ++++ D Sbjct: 18 MSDRAWPFLKMHGLGNDFVVLDARARALDLTPERVRAIASRGTGVGCDQLVVMTQATDPC 77 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DA + I N DGSEV +CGN RCV L + F+T G+L A+ ++VD Sbjct: 78 ADATMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 137 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG LDW+ IPLA + D + ++ L +P VSMGNPHA+FFV+ D + Sbjct: 138 MGPARLDWREIPLAEAVDTL------HLGISAGPLADPVGVSMGNPHAVFFVD-DAEAVN 190 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACASVV 234 LA G L H +F E N+ +A+V + + +R WERG G+T ACG+ ACA++V Sbjct: 191 LAQLGRGLEHHALFPERANIEVAQVLTPPDAEMGRIRMRVWERGAGITMACGTGACATLV 250 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ + R + + GG L IEW + HV MTG + G LD Sbjct: 251 AAARRGLSPRKAEIILDGGTLTIEWLKDGHVLMTGPVAVAFTGTLD 296 >gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str. 301020] Length = 276 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDPHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + ++ R + N VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAGAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|261364272|ref|ZP_05977155.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996] gi|288567517|gb|EFC89077.1| diaminopimelate epimerase [Neisseria mucosa ATCC 25996] Length = 283 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 141/284 (49%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +V++ + +T+ FDQ++L+ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVVNGIAQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDA 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV+ CGNG RC RF+ + +K ET +G+++ K +G ++ Sbjct: 59 VDFRYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP D + L V+MGNPHA+ VE D+ Sbjct: 119 VNMGKPRFTSSEIPFV-PVPDEVEDALTHMVMVGLETVQVSCVNMGNPHAVIVVE-DVQT 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A +G + H F E VN+ ++ ES+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVAHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVAGV 236 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V V + GG L I W V MTG + +EG+L Sbjct: 237 RLGLLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280 >gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 279 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 6 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 66 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 125 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P + + + L VVSMGNPH + VE D+ + Sbjct: 126 PIWEPAQVPFTAN-----KFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|212633302|ref|YP_002309827.1| diaminopimelate epimerase [Shewanella piezotolerans WP3] gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3] Length = 269 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 10/273 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + D I L+ FDQ++L+ D +D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG ++V+MG P+L+ Sbjct: 61 DGSEVEQCGNGARCFARFVRNKGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPMLEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + + VSMGNPH + V+ D+ + D+ + G+ L Sbjct: 121 SKIPFNAK-----KVEKTYLLMASTGTYLCGAVSMGNPHCVIDVD-DVANTDVDTIGSEL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 +H F +GVN+ +V + + LR +ERG T ACG+ ACA+VV K R V Sbjct: 175 TQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKLERNVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V + GG L+I W ++MTG A+ ++G++ Sbjct: 235 VDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267 >gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 279 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 6 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 66 RIFNADGSEVAQCGNGARCFARFVTLKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 125 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 126 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max] Length = 359 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 139/291 (47%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + A+ + D ++ + + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVGADGVIFVLPG-ISG 129 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F+ + R SFT T G+++ + DG++ Sbjct: 130 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171 VDMGEPIL +P + D V + + VSMGNPH + F Sbjct: 190 RVDMGEPILKXXDVPTKLHAN-KDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L + WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|229527132|ref|ZP_04416526.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)] gi|229335363|gb|EEO00846.1| diaminopimelate epimerase [Vibrio cholerae 12129(1)] gi|327483027|gb|AEA77434.1| Diaminopimelate epimerase [Vibrio cholerae LMA3894-4] Length = 276 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVCVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274 >gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] Length = 309 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R R+S + ++G++ +G + VDMG Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDRRSVRVQVMKGLITLTLQDNGEVVVDMG 142 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P S + + + R VSMGNPHA+ V+ D+ Y Sbjct: 143 APVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DVEAYP 201 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 261 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 262 GLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLNA 309 >gi|304413631|ref|ZP_07395075.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1] gi|304283722|gb|EFL92116.1| diaminopimelate epimerase [Candidatus Regiella insecticola LSR1] Length = 278 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 5 MQFSKMHGLGNDFMVVDNVTQNVYFSPELIRRLANRHTGVGFDQMLVVEPPYDPKLDFHY 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RFL + +K T G + + D + V+MGE Sbjct: 65 RIFNADGSEVFQCGNGARCFARFLHLKGLTSKKIIHISTQTGRMSLEITGDEKVCVNMGE 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + IP VVS+GNPH + VE D+ ++A Sbjct: 125 PVFTPRQIPF-----CATTTEKTYILRTAGHTTLCGVVSIGNPHCVLQVE-DVATANVAL 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F + N+ ++ ++++LR ERGVG T ACGS ACA+V Sbjct: 179 LGPMLEYHERFPQRTNVGFMQIIDRKNINLRVHERGVGETQACGSGACAAVAIGIEQQLL 238 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V VK+ GG L I+W H ++MTG A ++G + + Sbjct: 239 DKNVDVKLPGGKLSIQWKGKGHPLYMTGSAVHIYDGYIHL 278 >gi|225075130|ref|ZP_03718329.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens NRL30031/H210] gi|224953614|gb|EEG34823.1| hypothetical protein NEIFLAOT_00129 [Neisseria flavescens NRL30031/H210] Length = 283 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +V++ + + + + FDQ +++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++ Sbjct: 59 VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D + L V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPRFMPSEIPFV-PAHGENEDALTHIVLVGLESVPVSCVNMGNPHAVILVD-DVET 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +G ++ H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVEHWGGVIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ +EG+L Sbjct: 237 RNGLLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280 >gi|262404863|ref|ZP_06081417.1| diaminopimelate epimerase [Vibrio sp. RC586] gi|262348947|gb|EEY98086.1| diaminopimelate epimerase [Vibrio sp. RC586] Length = 276 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHIYDGQI 274 >gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032] gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032] Length = 274 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V N D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKREIRVSTANGRMVLTVNEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + L+P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PVFEPSLVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVATAPVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F E N+ ++ + E + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACGAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W N +FMTG A ++G + + Sbjct: 235 AAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274 >gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414] gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414] Length = 279 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 135/281 (48%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN +++D R + AI D ++ ++ D Sbjct: 3 IEFTKYHGLGNDFILVDNRASSLPVLTPEQAIQLCDRHFGIGADGVIFALPGEN-GADYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ RF+ + S+ T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP + + VSMGNPH I FV D+ Sbjct: 122 MGLPRLLAGEIPTTLG--TAETKVINQPLEVAGQTWEVTCVSMGNPHCITFVS-DVAAIP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP F + +N +V S + + +R WERG G+T ACG+ ACAS+VA Sbjct: 179 LEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + + ++MTG A+K + G+L Sbjct: 239 GNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279 >gi|23015511|ref|ZP_00055285.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 284 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 101/286 (35%), Positives = 148/286 (51%), Gaps = 13/286 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M F KM G+GN +V+D R ++T + + A+++ DQ++++ D+ Sbjct: 1 MSERAWPFLKMHGLGNDFVVLDARAHAIDLTPERVRAIASRGTGVGCDQLVVMTQATDSC 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DA + I N DGSEV +CGN RCV L + F+T G+L A+ ++VD Sbjct: 61 ADAQMLIYNADGSEVAACGNASRCVAWLLMKEIAADKVVFQTKAGLLDAESRGPHQVAVD 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG LDW+ IPLA + D + + L +P VSMGNPHA+FFV+ D Sbjct: 121 MGPARLDWREIPLAEAMDTL------HLGITAGPLSDPVGVSMGNPHAVFFVD-DAEAVP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACASVV 234 LA G L H +F E N+ +A+V + + +R WER G+T ACG+ ACA++V Sbjct: 174 LAQLGRGLEHHALFPERANIEVAQVLSPPDADMGRIRMRVWERSAGITMACGTGACATLV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ + R + + GG L IEW + HV MTG + G LD Sbjct: 234 AAARRGLSPRKAEIILDGGSLTIEWLKDGHVLMTGPVAVAFTGVLD 279 >gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa] gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa] Length = 314 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 98/291 (33%), Positives = 141/291 (48%), Gaps = 14/291 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASV 60 S + F K G+GN +V+D R + A+ + D ++ + Sbjct: 26 SRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVKLCDRNFGIGADGVIFALPGVN-GT 84 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ KR+SFT T G++V + DG + Sbjct: 85 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGKRQSFTVHTGAGLIVPEIQEDGQV 144 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171 VDMGEP+L +P + +K D V N VSMGNPH + F Sbjct: 145 KVDMGEPVLKAANVPTKLASNKNDA-VVKSELVVDGVTWNVTCVSMGNPHCVTFGTKGGE 203 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + + +LA G H +F N +V S L +R WERG G T ACG+ ACA Sbjct: 204 DLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSHLKMRVWERGAGATLACGTGACA 263 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 264 TVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEVVFYGSVRL 314 >gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42] gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42] Length = 315 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+++ A +D Sbjct: 26 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILIVRPSPGAGIDFEY 85 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG +V+ CGNG RC R++ + + + +T+ G++ DG ++VDMG Sbjct: 86 VIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVDMGR 145 Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P L+ +P S + + VVSMGNPHA+ V+ D+ Sbjct: 146 PELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGNPHAVQLVD-DVD 204 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F + VN ++ + + LR +ERG G T ACG+ ACA+VVA Sbjct: 205 TAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAAVVAG 264 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 L + V V GG L I+W + VFMTG A +EG++DI Sbjct: 265 IRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 312 >gi|329117998|ref|ZP_08246711.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200] gi|327465886|gb|EGF12158.1| diaminopimelate epimerase [Neisseria bacilliformis ATCC BAA-1200] Length = 287 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62 +++ F KM G+GN VID + + I A FDQ++L+ D Sbjct: 2 AVLKFTKMHGLGNDFAVIDGISQPFDPAAAPIAAWADRHTGIGFDQLLLVEQPVSPEADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DG EV+ CGNG RC RF+ + ++ ET RGI+V K G ++VDM Sbjct: 62 RYRIFNADGGEVEQCGNGARCFARFVADKGLTDKREIVVETARGIIVPKLEEGGLVTVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L IP + D + + +V+MGNPHA+ V+ D + Sbjct: 122 GKPRLRPSEIPF-LPAEGAAEDALRHDIAANGAAVSVGLVNMGNPHAVLTVD-DTDAAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G L HP F E N+ +V + LR +ERGVG T ACG+ ACA+VV L Sbjct: 180 ATLGAALETHPQFPEKANIGFMQVLDPHRIRLRVFERGVGETQACGTGACAAVVHGVRLG 239 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ ++G + Sbjct: 240 LLAAGEPVEVSLPGGRLRISWREGGSVMMTGPAQTVFDGVI 280 >gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis] gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis] Length = 369 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 142/291 (48%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F K +G+GN +++D R + IT + L D ++ + Sbjct: 81 ESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLCDRNFGIGADGVIFAMPGTN-G 139 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + ++SFT T G++V + DG + Sbjct: 140 TDYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQSFTIHTGAGLIVPEIQEDGKV 199 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL +P R + N VSMGNPH + F ++ Sbjct: 200 KVDMGEPILKASDVP-TRLRENKGDAVVKAKLNIDGVTWNVTCVSMGNPHCVTFGSNENQ 258 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +LA G H +F N +V S L +R WERG G T ACG+ ACA Sbjct: 259 DLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKMRVWERGAGATLACGTGACA 318 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +VVA+ + R +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 319 TVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPAEAVFYGAVAL 369 >gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 279 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 6 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 66 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 125 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P + + + L VVSMGNPH + VE D+ + Sbjct: 126 PIWEPAQVPFTAN-----KFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|119503713|ref|ZP_01625795.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080] gi|119460221|gb|EAW41314.1| Diaminopimelate epimerase [marine gamma proteobacterium HTCC2080] Length = 279 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN +VID + ++++ I L+ DQ++++ D Sbjct: 3 VRFTKMHGAGNDFVVIDNVRQNLDLSASQIRRLANRQRGIGCDQVLIVGPPDSPDADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGNG RC RF+ + + + G++ DG I +MG Sbjct: 63 HIFNADGSEAGQCGNGARCFARFVREQRLSLKPKLRVQAPNGLMQLDTANDGRILAEMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI +P D+++ V+SMGNPHA+ VE ++ +AS Sbjct: 123 PIFTPSAVPF-----DTDKEQLEYTLTVSDTSLAMGVLSMGNPHAVIIVE-NVQTAPVAS 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F++ VN+ ++ S + + LR +ERG G T ACG+ ACA+VV + Sbjct: 177 LGETIEGHPKFTDRVNVGFMQILSRDEIKLRVFERGAGETLACGTGACAAVVHGIRKNLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N AV+V + GG L I W N +++G +EG +++ Sbjct: 237 NNAVTVHLPGGKLSITWEGNGTAAWLSGPTASVFEGTINL 276 >gi|258625071|ref|ZP_05719990.1| diaminopimelate epimerase [Vibrio mimicus VM603] gi|258582622|gb|EEW07452.1| diaminopimelate epimerase [Vibrio mimicus VM603] Length = 276 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCVTQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTINVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPSKIPF----RAKQSEKTYILRAGEQTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S E ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSREEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G++ Sbjct: 238 EQVRVHLPGGELEISWKGPGKPLYMTGPATHAYDGQI 274 >gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801] gi|226724207|sp|B7K1E7|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801] Length = 281 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 11/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F+K +G+GN ++ID R H + AI D ++ + A+ D Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF+ K++ +T+ G++ + G + VD Sbjct: 62 MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L K IP + + VSMGNPH I FV+ D++ D Sbjct: 122 MGTPYLLAKEIPTTLG--NSNDKVINHSLEVAGQTWLVTCVSMGNPHCITFVK-DVWGID 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ +R V++ GG L IEW + +N ++MTG A+ + G ++ Sbjct: 239 NQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTGIYNL 281 >gi|261379692|ref|ZP_05984265.1| diaminopimelate epimerase [Neisseria subflava NJ9703] gi|284797356|gb|EFC52703.1| diaminopimelate epimerase [Neisseria subflava NJ9703] Length = 283 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 138/284 (48%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +V++ + + + + FDQ +++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++ Sbjct: 59 VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETTKGIIVPKLLDNGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D + L V+MGNPHA+ V+ ++ Sbjct: 119 VNMGKPRFMPSEIPFV-PAHGENEDALTHIVLVGLESVPVSCVNMGNPHAVILVD-NVET 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +G + H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVEHWGGAIESHEQFPERVNVGFLQVEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ +EG+L Sbjct: 237 RNGLLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280 >gi|328541782|ref|YP_004301891.1| diaminopimelate epimerase [polymorphum gilvum SL003B-26A1] gi|326411534|gb|ADZ68597.1| Diaminopimelate epimerase [Polymorphum gilvum SL003B-26A1] Length = 304 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 123/295 (41%), Positives = 167/295 (56%), Gaps = 5/295 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M S+ F KM G+GN +V D R +++ + I AL FDQ++ + A Sbjct: 1 MASARRPFLKMNGLGNDFVVWDARAEALSLSPETIAALGNRSTGIGFDQMITVECSP-AG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-RDGSISV 118 DAF+RI NCDGS+V +CGN RCV R L R ET G+LVA+ ++V Sbjct: 60 ADAFMRIHNCDGSQVSACGNATRCVGRLLMEESGRPDANIETRAGLLVARATGDPRVVTV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L W IPLA F IGP++ L P VV+MGNPHAIF+V D+ Y Sbjct: 120 DMGVPRLRWDEIPLAEEFADTRAIELQIGPIDAPILHTPAVVNMGNPHAIFWVG-DVEAY 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G LL +HP+F EG N+S+A V + + + ++ WERG GLT ACG+AACA VA+ Sbjct: 179 DLGRIGPLLERHPIFPEGANISLAHVFAPDQIRVKVWERGAGLTRACGTAACAVAVAAAR 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 + R +V + GG L IEW + + HV MTG + E+EG++D+ T W + Sbjct: 239 DGRAGRRSTVHLPGGPLTIEWREGDGHVLMTGATEVEFEGEIDLDTLAWERTGPG 293 >gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY] gi|254767102|sp|B9MFT0|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY] Length = 292 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 137/288 (47%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + A +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG +V+ CGNG RC R++ + + + +T+ G++ DG ++VDMG Sbjct: 63 VIHNADGGQVEQCGNGARCFARYVRDKGLTAQDTIRVQTMAGVIAPHLTADGRVTVDMGR 122 Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P L+ +P S + + VVSMGNPHA+ V+ D+ Sbjct: 123 PELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGNPHAVQLVD-DVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F + VN ++ + + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 TAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 L + V V GG L I+W + VFMTG A +EG++DI Sbjct: 242 IRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEIDIP 289 >gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802] gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802] Length = 281 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 142/283 (50%), Gaps = 11/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F+K +G+GN ++ID R H + AI D ++ + A+ D Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGT-ANTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF+ K++ +T+ G++ + G + VD Sbjct: 62 MRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L K IP + + VSMGNPH I FV+ D++ D Sbjct: 122 MGTPYLLAKEIPTTLG--NSNDKVINHSLEVAGQTWLVTCVSMGNPHCITFVK-DVWGID 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 ++ +R V++ GG L IEW + NN ++MTG A+ + G ++ Sbjct: 239 NQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTGIYNL 281 >gi|254226602|ref|ZP_04920183.1| diaminopimelate epimerase [Vibrio cholerae V51] gi|125620874|gb|EAZ49227.1| diaminopimelate epimerase [Vibrio cholerae V51] Length = 285 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 10/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + +T T +G +V + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH + V+ D+ + + Sbjct: 124 EFEPNKIPF----RAKQSEKTYILRVGEHTLFCG-AVSMGNPHVVTVVD-DIRTAAVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 V V + GG L I W ++MTG A ++G Sbjct: 238 EQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDG 272 >gi|260774851|ref|ZP_05883753.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450] gi|260609276|gb|EEX35431.1| diaminopimelate epimerase [Vibrio coralliilyticus ATCC BAA-450] Length = 276 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ D ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILSIEEDDQVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I L VSMGNPH + V+ D D+ + Sbjct: 124 EFEPNKIPFKAK----QTEKTYILRAEEKTLFCG-AVSMGNPHVVTVVD-DTQTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLSRNEVNLRVYERGAGETQACGSGACGAVAVGIVQELLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V+V + GG L I W ++MTG A ++G+L Sbjct: 238 EKVTVNLPGGSLKISWQGPGKPLYMTGPATHVFDGQL 274 >gi|218767882|ref|YP_002342394.1| diaminopimelate epimerase [Neisseria meningitidis Z2491] gi|21362492|sp|Q9JV69|DAPF_NEIMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121051890|emb|CAM08196.1| putative diaminopimelate epimerase [Neisseria meningitidis Z2491] gi|319410129|emb|CBY90465.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis WUE 2594] Length = 283 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAQV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|329847627|ref|ZP_08262655.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19] gi|328842690|gb|EGF92259.1| diaminopimelate epimerase [Asticcacaulis biprosthecum C19] Length = 270 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 108/274 (39%), Positives = 158/274 (57%), Gaps = 9/274 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D R D I A S FDQ++ I D +D DAF+R+ N Sbjct: 1 MNGLGNDFIVVDARETAFQPAPDQIRAWSNRVSGIGFDQLIAIEDSRDG--DAFMRVWNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----DGSISVDMGEPIL 125 DG V++CGN +RCV +L K+ +T+ G A+ R G+ S+DMG+P L Sbjct: 59 DGGGVETCGNALRCVAWYLNRDASDKTLKIDTLGGATKARVLRADATTGTASIDMGKPGL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPL+ + + +GP + P VSMGNPH +FFV+ D+ D+ + G+ Sbjct: 119 DWRDIPLSEEMNTAKLE-LKVGPYDAPLYHTPVAVSMGNPHCVFFVD-DIATVDVKATGS 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F E VN+ A++ +++ +R WERG G+T ACG+ ACA++VA+ T RA Sbjct: 177 LIEHHPLFPESVNVEFAQILDKDTIRMRVWERGAGITQACGTGACATLVAAARRGLTGRA 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V M GG L I W +N+HV MTG + E+EG L Sbjct: 237 ATVHMDGGPLHIVWAENDHVIMTGPVEVEFEGTL 270 >gi|255065307|ref|ZP_05317162.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256] gi|255050728|gb|EET46192.1| diaminopimelate epimerase [Neisseria sicca ATCC 29256] Length = 283 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 145/284 (51%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +V++ G + +T+ FDQ++L+ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVVNGIGQDFDPLTAPLAEWSDRFRGVGFDQLLLVEKPSSDA 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV+ CGNG RC RF+ + +K ET +G+++ K +G ++ Sbjct: 59 VDFRYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEILVETAKGVIIPKLLDNGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP D+ D D + L V+MGNPHA+ VE D+ Sbjct: 119 VNMGKPRFTSSEIPFVPVPDEAD-DALTHMVMVGLETVQVSCVNMGNPHAVIVVE-DVQT 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A +G + H F E VN+ ++ ES+ LR +ERGVG T ACG+ ACA+VV+ Sbjct: 177 APVAHWGEAIESHEQFPERVNVGFMQIVDRESIRLRVFERGVGETQACGTGACAAVVSGV 236 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V V + GG L I W V MTG + +EG+L Sbjct: 237 RLGLLAEGVPVKVSLPGGDLFITWSHGEDVLMTGPVQTVFEGEL 280 >gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA] gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA] Length = 274 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 141/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTA-----NKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQIANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V +LGG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|237747588|ref|ZP_04578068.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13] gi|229378950|gb|EEO29041.1| diaminopimelate epimerase [Oxalobacter formigenes OXCC13] Length = 287 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 134/286 (46%), Gaps = 11/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V++ N+T + L+ DQI+L+ + VD Sbjct: 3 LKFTKMHGAGNDFIVLNAIDQVINLTREQYRFLADRRYGIGADQILLVEKPDNPEVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R +F+T ++ ET GI+ +DGS++VDMG Sbjct: 63 RIFNSDGGEVEQCGNGARAFAKFVTESGLSRQNPIKVETRVGIIELHLEKDGSVTVDMGN 122 Query: 123 PILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P+ + IP + + VVSMGNPHA+ V+ D+ Sbjct: 123 PVFETSRIPFLTKGLTSDEIGSDTIWNLILDTGGIKKSIPISVVSMGNPHAVQIVD-DVN 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ H F E VN + S+ LR +ERG T ACG+ ACA+VV+ Sbjct: 182 RAAVAEEGPLIENHERFPERVNAGFMEIQDRHSIKLRVYERGAAETLACGTGACAAVVSG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+VK GG L I W H V M+G A + G++++ Sbjct: 242 IRRKLLDSPVTVKARGGELKIAWEGEGHNVIMSGPAIIVFNGEINL 287 >gi|254515503|ref|ZP_05127563.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3] gi|219675225|gb|EED31591.1| diaminopimelate epimerase [gamma proteobacterium NOR5-3] Length = 276 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 126/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN ++ID + I ++ DQ++L+ S D Sbjct: 3 VKFTKMHGAGNDFVMIDTISQRIKLKPRDIRKIADRRRGIGCDQVLLVEPPGQPSADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGNG RC RF + E ++ + + VDMG Sbjct: 63 RIFNADGSEAGQCGNGARCFARFVRHRRLTHLQKMVVEAGNSLMTLTIRDNHDVEVDMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IPL R + ++ D G + VSMGNPHAI V+ + + L Sbjct: 123 PNFAPNDIPLRRDQEALEYDLVAAGEQLRIG-----AVSMGNPHAILRVDA-VDNGSLER 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F EG N + +++ LR +ERGVG T ACGS ACA+VV + Sbjct: 177 LGEAIRSHSDFPEGSNAGFLEIVDRQNVRLRVFERGVGETQACGSGACAAVVYGRRMGWL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V++ GG L I W +N V MTG +EG + + Sbjct: 237 DDQVTVELTGGKLSIHWQGDNSPVLMTGPTAISFEGTIRL 276 >gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708] gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708] Length = 279 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 136/281 (48%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R A+ D ++ Q+ D Sbjct: 3 IEFTKYHGLGNDFILIDNRSSLTPVITPQQAVKWCDRHFGIGADGVIFALPGQN-DTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ FLT + + T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTKDYYRIHTLAGVITPQLTHDGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L + IP F D ++ + VSMGNPH I F+E D+ Sbjct: 122 MGLPRLLAQEIPTT--FAPADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIE-DVAAIP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP F + +NL + + L +R WERG G+T ACG+ ACA +VA Sbjct: 179 LEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAGVLN 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R ++++ GG L IEW + + ++MTG A++ + GK Sbjct: 239 DKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGKF 279 >gi|316983746|gb|EFV62727.1| diaminopimelate epimerase [Neisseria meningitidis H44/76] gi|325200553|gb|ADY96008.1| diaminopimelate epimerase [Neisseria meningitidis H44/76] gi|325203848|gb|ADY99301.1| diaminopimelate epimerase [Neisseria meningitidis M01-240355] gi|325206397|gb|ADZ01850.1| diaminopimelate epimerase [Neisseria meningitidis M04-240196] Length = 283 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 279 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 6 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MG Sbjct: 66 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGG 125 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P + + + L VVSMGNPH + VE D+ + Sbjct: 126 PIWEPAQVPFTAN-----KFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 180 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 240 DNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279 >gi|255645761|gb|ACU23373.1| unknown [Glycine max] Length = 359 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 141/291 (48%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + I+++ A+ + D ++ + Sbjct: 71 ESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVGADGVIFVLPG-ING 129 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N D SE + CGNG+RC +F+ + R SFT T G+++ + DG++ Sbjct: 130 TDYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGAGLIIPEVLEDGNV 189 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171 VDMGEP+L +P + D V + + VSMGNPH + F Sbjct: 190 RVDMGEPVLKALDVPTKLPAN-KDNAVVKSQLVVDGVIWHVTCVSMGNPHCVTFSREGSQ 248 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + LA G H +F N +V S L +R WERG G T ACG+ ACA Sbjct: 249 NLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 308 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +V A+ + R +V + GG L IEW ++NHV+MTG A + G L + Sbjct: 309 TVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 359 >gi|325144201|gb|EGC66508.1| diaminopimelate epimerase [Neisseria meningitidis M01-240013] Length = 301 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 20 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 80 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 140 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQIISRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 298 >gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336] gi|189082834|sp|B0UWU6|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336] Length = 274 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + ++ I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNIYFPTEVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + +K T +G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVVLKGLTNKKEIAVSTAKGKMMLCVKDDDMVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VVSMGNPH + VE D+ H ++ Sbjct: 121 PIWEPNKIPFNA-----NKFEKNYIIRTDIQTLLCGVVSMGNPHCVTQVE-DIQHANIEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L+IEW H ++MTGEA ++G + + Sbjct: 235 GSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274 >gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans Z-2901] gi|123576129|sp|Q3AC09|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +V+D + N++ A D ++L+ + A D Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLSDLAKKICDRRFGIGADGLVLLLPSEKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 +RIIN DGSE + CGN +RCV R+ + K ET+ GI+ + + + VD Sbjct: 59 FKMRIINSDGSEAEMCGNAIRCVARYYVEKYNPAKKQLEVETLAGIIKPEVLENNMVRVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PIL + IP+A + ++ +G + VSMGNPHA+ FV+ L + Sbjct: 119 MGRPILKPQEIPVAVEEEPVNIPLEVLGQKFY-----FTAVSMGNPHAVIFVD-SLAKIE 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L +G L+ HP+F N+ + S + + WERG G T ACG+ A A VVA L Sbjct: 173 LEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVVAGRIL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V + GG L I W V+MTG A+ ++G+ + Sbjct: 233 GHLQEDVEVVLPGGSLFINWVFGESVYMTGPAEIVFKGEYFL 274 >gi|254804641|ref|YP_003082862.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14] gi|254668183|emb|CBA04889.1| Diaminopimelate epimerase [Neisseria meningitidis alpha14] Length = 283 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGN HA+ V+ D+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNSHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] Length = 282 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 11/286 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDA 58 M ++F K G+GN ++ID R IT + A+ D ++ ++ Sbjct: 1 MGKMAIEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN- 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDG 114 D +RI N DGSE + CGNG+RC+ FL + ++ T+ G++ + DG Sbjct: 60 GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDG 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I VDMG P L IP + D+ + VSMGNPH I FVE D Sbjct: 120 QIKVDMGLPRLLAGEIPT--NIAAADQKVINQPLEVEGKTWEVTCVSMGNPHCITFVE-D 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L + G HP F + N +V S + L +R WERG G+T ACG+ ACAS+V Sbjct: 177 VAAIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLV 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A+ +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 237 AAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282 >gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843] gi|189082835|sp|B0JJ58|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843] Length = 281 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 144/285 (50%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN ++ID R + + + A+ D ++ Q A D Sbjct: 3 IPFTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQ-AETDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ + +++ T+ G ++ + + ++VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L + +K+ + + L VSMGNPH + FV DL Sbjct: 122 MGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWL----VTCVSMGNPHCVTFVG-DLAS 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G HP+F + N+ V + + + +R WERG G+T ACG+ ACA VVA+ Sbjct: 177 IPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAAL 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 K +R +V++ GG L I W +N V+MTG AK +EG I Sbjct: 237 LTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYPI 281 >gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 274 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T D I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLAPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++M G+A ++G + + Sbjct: 235 DNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDGFIKL 274 >gi|121634557|ref|YP_974802.1| diaminopimelate epimerase [Neisseria meningitidis FAM18] gi|120866263|emb|CAM10004.1| putative diaminopimelate epimerase [Neisseria meningitidis FAM18] gi|308388948|gb|ADO31268.1| putative diaminopimelate epimerase [Neisseria meningitidis alpha710] gi|325132004|gb|EGC54703.1| diaminopimelate epimerase [Neisseria meningitidis M6190] gi|325137835|gb|EGC60410.1| diaminopimelate epimerase [Neisseria meningitidis ES14902] Length = 283 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPRFMPSEIPFVPELGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624] gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624] Length = 302 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 134/287 (46%), Gaps = 10/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D + + L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGQLGLNTAQYRWLADRHFGVGADQILSVRPSPAPGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 I N DG+EV+ CGNG RC RF+ R + + +T+ G++ + DG ++VDMG Sbjct: 63 VIHNADGAEVEQCGNGARCFARFVHDRGLSEKPSIRVQTLGGVIEPRITLDGRVTVDMGA 122 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVS-----MGNPHAIFFVEDDLY 176 PI D +P A +D+ H + V+ MGNPHA+ V D+ Sbjct: 123 PIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIV-ADVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G + +H F VN +V + + + LR WERG G T ACG+ ACA+VVA Sbjct: 182 AAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L V V GG L IEW + V MTG A + G++D+ Sbjct: 242 IRLGLLEARVDVHTRGGVLTIEWSEGRPVLMTGPATTVFHGEIDVPE 288 >gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797] gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797] Length = 279 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 134/282 (47%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN + ++ ++I S AI D ++LI + A DA Sbjct: 1 MKFTKMHGAGNDYVYVNCFEETLPEDIASLAIAVSDRHTGIGSDGLILICPSEKA--DAQ 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN------RDGSIS 117 +R+ N DGSE + CGNG+RCV +++ T + G V + + + Sbjct: 59 MRMFNADGSESEMCGNGVRCVAKYVYDHGISNQQTLKIETGAGVLSLDLELAGSKVSQVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL IP D +G VSMGNPH I FV+ ++ Sbjct: 119 VNMGKPILTSAEIPTLLPGDPPVNAPLEVGAQ----TLEVTCVSMGNPHCITFVD-EVND 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + HPMF VN V S L +R WERG G T ACG+ ACAS VA Sbjct: 174 HWVHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGACASAVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ R V + + GG L +EW DN+ VFMTG A + ++G Sbjct: 234 LTGRSERNVLIHLPGGDLRLEWADNDEVFMTGPAVEVYQGIW 275 >gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As] Length = 287 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 7/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN +V+D +++ + L+ DQI+L+ VD Sbjct: 3 VAFTKMHGAGNDFVVLDATRAPLALSAAQLRLLADRHFGVGADQILLVEAAPSPEVDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V ++ + ++ +T+ G++ + DG ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDMGA 122 Query: 123 PILDWKLIPLARS-FDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D +P D + P++ + V+SMGNPHA+ V+ D+ + Sbjct: 123 PVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQRVD-DVDTAPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 S G L+ HP F VN ++ + + LR WERG G T ACG+ ACA+VVA Sbjct: 182 LSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLRHG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 AV V+ GG L I W V MTG A ++G +D+ Sbjct: 242 WLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDLP 284 >gi|325129925|gb|EGC52726.1| diaminopimelate epimerase [Neisseria meningitidis OX99.30304] gi|325136015|gb|EGC58625.1| diaminopimelate epimerase [Neisseria meningitidis M0579] gi|325202442|gb|ADY97896.1| diaminopimelate epimerase [Neisseria meningitidis M01-240149] gi|325207806|gb|ADZ03258.1| diaminopimelate epimerase [Neisseria meningitidis NZ-05/33] Length = 283 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 144/281 (51%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755] gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165] gi|254767106|sp|B8F878|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755] gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165] Length = 274 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I + FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + T +G +V DG + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VVSMGNPH + VE ++ ++ Sbjct: 121 PIWEPAQIPFTA-----NKFEKNYILRTDIQTVLCGVVSMGNPHCVLQVE-NIQTANVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + V V + GG L IEW + ++MTG+A+ ++G + Sbjct: 235 DSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDGAVK 273 >gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] Length = 309 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQENGEVVVDMG 142 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P + + + + R VSMGNPHA+ V+ D+ Y Sbjct: 143 APVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DVEAYP 201 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 261 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 262 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA 309 >gi|325142033|gb|EGC64465.1| diaminopimelate epimerase [Neisseria meningitidis 961-5945] gi|325197981|gb|ADY93437.1| diaminopimelate epimerase [Neisseria meningitidis G2136] Length = 283 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPRFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|319637644|ref|ZP_07992410.1| diaminopimelate epimerase [Neisseria mucosa C102] gi|317400799|gb|EFV81454.1| diaminopimelate epimerase [Neisseria mucosa C102] Length = 283 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 141/284 (49%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +V++ + + + + FDQ +++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVVNAIEQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++ Sbjct: 59 VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + + + D + L V+MGNPHA+ V+ ++ Sbjct: 119 VNMGKPRFMPSEIPFVPAHGETE-DALTHIVLVGLESVPVSCVNMGNPHAVILVD-NVET 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +G+ + H F E VN+ ++ S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVDHWGSAIESHEQFPERVNVGFMQIEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ +EG+L Sbjct: 237 RNGLLKAGAPVRVTLPGGELFISWEEGGDVQMTGPAETVFEGEL 280 >gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] Length = 309 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDQRSVRVQVMKGLITLTLQDNGEVVVDMG 142 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P + ++ R VSMGNPHA+ V+ D+ Y Sbjct: 143 APVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DVEAYP 201 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 261 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 262 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA 309 >gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From Arabidopsis Thaliana In Complex With Ll-Azidap gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form Arabidopsis Thaliana In Complex With Irreversible Inhibitor Dl-Azidap Length = 317 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 137/288 (47%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 ++ ++ F K G+GN +++D R + IT + L D ++ + Sbjct: 23 ETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVN-G 81 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + + SFT T G++V + DG + Sbjct: 82 TDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQV 141 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--- 173 VDMG PIL + +P S + V N VSMGNPH I F + Sbjct: 142 KVDMGTPILKAQDVPTKLSGN-KGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGP 200 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +L G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 201 NLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 260 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G Sbjct: 261 LVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGS 308 >gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231] gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231] Length = 277 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 10/282 (3%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM+ +GN +VID ++SD I LS DQ++L Q D Sbjct: 2 TKLRFTKMQALGNDFIVIDAMSQTVALSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDI 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDM 120 R+ N DG EV+ CGNG+RC+ RFL + + ET G+ + DG+I+V+M Sbjct: 62 RYRVFNADGGEVEHCGNGVRCLARFLHEKALLEQHELRVETRNGLTLVHLCDDGAIAVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+L+ + IP + + + VSMGNPHA+ V+ D+ + Sbjct: 122 GPPVLEPERIPFRPTKQASEYALALEDKRIMIG-----AVSMGNPHAVLQVD-DIDSAPI 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +FG L+ +H F + VN+ +V S + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 176 DTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAVVSGRLRG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L+I W + V+MTG A +EG++ + Sbjct: 236 LLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277 >gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|229807484|sp|B0BRC5|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 274 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + +T + I L+ FDQ++L+ D +D Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + ++ T +G +V + + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + +P ++ + L VVSMGNPH + VE D+ + Sbjct: 121 PIWEPAQVPFTA-----NKFEKNYILRTDLQTVLCGVVSMGNPHCVLQVE-DINLTPVNE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ +V + + LR +ERG G T ACGS AC +V Sbjct: 175 LGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVAVGIMQGVL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L IEW H ++MTG+A ++G + + Sbjct: 235 DNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274 >gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148] gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148] Length = 276 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 130/281 (46%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G GN +V+D+ + I L+ DQ++++ VD Sbjct: 2 LLKFTKMHGAGNDFIVVDLISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ + ET GI+ + + + VDMG Sbjct: 62 YRIFNADGGEVEQCGNGARCFARFVRDNKLTSKRIISVETACGIIQLRLRDNNQVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ + IP + + +SMGNPH++ V+ D+ ++ Sbjct: 122 APILEPQKIPFDAP-----EEATSYPLQVEENVLEIGALSMGNPHSVCRVD-DVDSINIE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ HP F + N ++ S + LR +ERGVG T ACG+ ACA+VV Sbjct: 176 HLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVYGLSRGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I W V MTG +EG + I Sbjct: 236 LRDTVTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTIRI 276 >gi|198284450|ref|YP_002220771.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248971|gb|ACH84564.1| Diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 297 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 126/282 (44%), Gaps = 10/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +V D ++ + + ++ DQI+L+ D Sbjct: 13 LRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDFRY 72 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+EV CGNG RC + T ET G L+ +G+I+V MG Sbjct: 73 RIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHMGV 132 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L +P + D + V MGNPHA+ V +A+ Sbjct: 133 PRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVASAAE-APVAT 186 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F E N+ + + LR WERG G T ACGS ACA+VVA + Sbjct: 187 LGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWDEL 246 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 + AV+V + GG L IEW H V MTG A+ ++G + Sbjct: 247 DHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 288 >gi|261378786|ref|ZP_05983359.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685] gi|269144763|gb|EEZ71181.1| diaminopimelate epimerase [Neisseria cinerea ATCC 14685] Length = 283 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 99/281 (35%), Positives = 146/281 (51%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFIPEHAPIAAWADRFRGIGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + +K ET +GI+ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP D+ D D G ++ V++GNPHA+ V+ D+ + Sbjct: 122 GKPKFMPSEIPFVPVSDEGD-DACIYGVHLESGIQPVSCVNIGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|218666260|ref|YP_002427117.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518473|gb|ACK79059.1| diaminopimelate epimerase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 288 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 126/282 (44%), Gaps = 10/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +V D ++ + + ++ DQI+L+ D Sbjct: 4 LRFTKMQGLGNDFVVFDGIRQRVDLPPEMVRTIADRHFGIGCDQILLVEAAASPDCDFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+EV CGNG RC + T ET G L+ +G+I+V MG Sbjct: 64 RIFNADGTEVAQCGNGARCFAVFVRRAKLTGKDIITVETRTGRLILHHRGNGNITVHMGV 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L +P + D + V MGNPHA+ V +A+ Sbjct: 124 PRLVPADVPF-----RADEESPEYLLSAGKHTLRIAAVGMGNPHAVLRVASAAE-APVAT 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F E N+ + + LR WERG G T ACGS ACA+VVA + Sbjct: 178 LGPRIETHPAFPERCNVGFMEIRDRNHIQLRVWERGAGETLACGSNACAAVVAGIRWDEL 237 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 + AV+V + GG L IEW H V MTG A+ ++G + Sbjct: 238 DHAVAVTLPGGTLEIEWAGPGHPVMMTGPAQVVFDGVWPLPA 279 >gi|161869705|ref|YP_001598872.1| diaminopimelate epimerase [Neisseria meningitidis 053442] gi|161595258|gb|ABX72918.1| diaminopimelate epimerase [Neisseria meningitidis 053442] gi|325127855|gb|EGC50761.1| diaminopimelate epimerase [Neisseria meningitidis N1568] gi|325133725|gb|EGC56381.1| diaminopimelate epimerase [Neisseria meningitidis M13399] Length = 283 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|304387930|ref|ZP_07370103.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091] gi|304338027|gb|EFM04164.1| diaminopimelate epimerase [Neisseria meningitidis ATCC 13091] Length = 301 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 20 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 79 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 80 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 258 LLDEGKTVEVILPGGTLYIEWACGGDVRMTGPAETVFEGEL 298 >gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1] gi|81598729|sp|Q5P2V2|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1] Length = 277 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 131/281 (46%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID ++T + + L+ DQ++++ + VD Sbjct: 3 LRFTKMHGLGNDFVVIDAIRQSVDLTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET GI+ + DG ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHEQGLTAKRRIRVETRSGIIAPQLEDDGLVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+L+ +P D VSMGNPHA+ V D A Sbjct: 123 PVLEPARVPFVSDSDA-----IVQPLDVGGETVAITAVSMGNPHAVQVVADVDAAPVAAQ 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ +HP F VN +V + LR +ERG G T ACG+ ACA+VV Sbjct: 178 -GALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVTVILRELA 236 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 V V+ GG L I W V MTG A + G++D+ Sbjct: 237 QSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEIDVD 277 >gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate Epimerase Length = 274 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV GNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQXGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+ D+ ++ Sbjct: 121 PIWEPAKIPFTA-----NKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVD-DIQTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T A GS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >gi|261392870|emb|CAX50451.1| diaminopimelate epimerase (DAP epimerase) [Neisseria meningitidis 8013] Length = 283 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501] gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501] Length = 278 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 11/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R +A+ D ++ D + D Sbjct: 1 MEFTKYQGLGNDFILVDNRHSTTPSLSPEEAVKLCDRHFGIGADGVIFALPG-DENSDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE Q CGNG+RC+ RF KS+ +T+ GI++ +G + VD Sbjct: 60 MRIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVKVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L K IP + K + VSMGNPH I FVE D+ Sbjct: 120 MGTPFLLAKEIPTTLT--KAEEKVIDQSLEVGDQSWLVTCVSMGNPHCITFVE-DVAKIP 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 177 LETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVAGVLT 236 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 +R +V++ GG L IEW +N ++MTG A++ + G +D Sbjct: 237 GHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVID 278 >gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120] gi|22256738|sp|Q8YVD0|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2 Length = 279 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R IT + A+ D ++ ++ D Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGEN-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ FL + ++ T+ G++ + DG I VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP D + VSMGNPH I FVE D+ Sbjct: 122 MGLPRLLAGEIPTTLGA--ADGKVINQPLEVEGQTWEVTCVSMGNPHCITFVE-DVAAIP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP F + N +V S + L +R WERG G+T ACG+ ACAS+VA+ Sbjct: 179 LEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAAVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +++R +V++ GG L IEW + + ++MTG A + + GKL Sbjct: 239 GRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279 >gi|313668759|ref|YP_004049043.1| diaminopimelate epimerase [Neisseria lactamica ST-640] gi|313006221|emb|CBN87683.1| putative diaminopimelate epimerase [Neisseria lactamica 020-06] Length = 283 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 99/284 (34%), Positives = 145/284 (51%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID + I + FDQ++++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDAVSQNFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV CGNG RC RF+T + +K ET +G++ K + +G ++ Sbjct: 59 VDFRYRIFNADGSEVGQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D D G ++ V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVRETGPLIEAHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera sp. 301] gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera sp. 301] Length = 276 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 134/280 (47%), Gaps = 12/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +VI+ +T++ I L+ FDQ++L+ + A D Sbjct: 5 LHFTKMQGAGNDFIVINGIDQPFQLTAEQIQTLAHRQFGIGFDQLLLVETSKVA--DFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC VRF + + ET GI+ K +G ++V+MG Sbjct: 63 RIFNADGSEVAQCGNGARCFVRFVVDQKLSNKHEISVETASGIITPKLENNGLVTVNMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L +P + + VSMGNPHA+ V+ D+ + + Sbjct: 123 PRLSPSEVPFIADA-AANSYVLEVADQQITI----SAVSMGNPHAVQIVD-DVEIAPVVA 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + HP F E VN ++ + LR +ERG G T ACG+ ACA+VVA L + Sbjct: 177 LGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAVVAGIQLGRL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V GG L I W N V MTG A + G ++I Sbjct: 237 QSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNIEI 276 >gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis] Length = 375 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 132/283 (46%), Gaps = 13/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F K G+GN +++D R I+ + L D ++ + D Sbjct: 91 LHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVN-GTDYS 149 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ F+ +S+ T G++V K DG + VDM Sbjct: 150 MRIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKVMVDM 209 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI-----FFVEDDL 175 G+PIL IP + PV+ VSMGNPH + D+ Sbjct: 210 GQPILTAANIPTKLPKREDGAVVKAELPVDGKI-WIVTCVSMGNPHCVTFSRKDCEVLDV 268 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G L H MF N ++ S L +R WERG G T ACG+ ACA VVA Sbjct: 269 NSLTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAGACALVVA 328 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + ++ R V + GG L IEW++ +NHV+MTG A+K + G Sbjct: 329 AVLEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSG 371 >gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2] gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2] Length = 276 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T++ + L+ DQI+L+ DAS D Sbjct: 3 LKFTKMHGAGNDFVVLDGVRQQISLTTEQLRLLADRHFGVGCDQILLVEKAHDASADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + + ET G++ + DG + V+MG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHDQKLTNKAEIVVETHNGLIRPRLEADGRVVVNMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ D IP + V +VSMGNPHA+ V+ D+ + Sbjct: 123 PVFDAARIPFSG-----GTIEVMQPLVVADQTLMVSIVSMGNPHAVQVVD-DVERAAVEV 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F + VN ++ + + LR +ERG G T +CG+ ACA+VV+ Sbjct: 177 LGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSGIRRGLL 236 Query: 243 NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + VSV GG L I W + V MTG A + G++++ Sbjct: 237 DSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276 >gi|241760323|ref|ZP_04758418.1| diaminopimelate epimerase [Neisseria flavescens SK114] gi|241319201|gb|EER55679.1| diaminopimelate epimerase [Neisseria flavescens SK114] Length = 283 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +V++ + + + + FDQ +++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVVNAINQDFDPLAAPLAQWADRYRGVGFDQFLVVEKPSSDA 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DG EV+ CGNG RC RF+ + + ET +GI+V K +G ++ Sbjct: 59 VDFRYRIFNADGREVEQCGNGARCFARFVADKGLTDKTEILVETAKGIIVPKLLDNGLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP ++D + L V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPRFMPSEIPFV-PAHGENKDALTHIVLVGLESVPVSCVNMGNPHAVILVD-DVET 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +G + H F E VN+ +V S+ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVEHWGGAIESHEQFPERVNVGFVQVEDELSVRLRVFERGVGETQACGTGACAAVVAGV 236 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + V MTG A+ +EG+L Sbjct: 237 RNGLLKEGAPVRVTLPGGELFISWEECGDVQMTGPAETVFEGEL 280 >gi|326315548|ref|YP_004233220.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372384|gb|ADX44653.1| diaminopimelate epimerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 297 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 135/293 (46%), Gaps = 17/293 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPADGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC R++ + T +T+ G++ + DG ++VDMG Sbjct: 63 VIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTEDGRVTVDMGR 122 Query: 123 PILDWKLIPLARSF-----------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 P D +P S +D + + VVSMGNPHA+ V Sbjct: 123 PRFDPAEVPFDASGLESTVRGAGQTWPLDLGAGAGAGAQEGDVVDVAVVSMGNPHAVQLV 182 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E D+ +A G L+ +H F + VN ++ + LR +ERG G T ACG+ ACA Sbjct: 183 E-DVDTAPVARTGPLIERHVRFPQRVNAGYLQIEDRSRVRLRVYERGAGETLACGTGACA 241 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 +V A L + V V+ GG L I W + VFMTG A +EG++DI Sbjct: 242 AVAAGIRLGLLDTRVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 294 >gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10] gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10] Length = 294 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 136/293 (46%), Gaps = 16/293 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFD-------KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 P+ +P + + + R VSMGNPHA+ V+ D Sbjct: 123 APVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-D 181 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + Y + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V Sbjct: 182 VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVA 241 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 A + V+V GG L I W + + M G A +EG++D+ Sbjct: 242 AGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDLTA 294 >gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1] gi|122326877|sp|Q0BS04|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1] Length = 275 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 14/282 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 ++DF KM G+GN +V D R ++ A++ DQ++++ A DA Sbjct: 2 LIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTVA--DA 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+RI N DGSE +CGN RCV L ET+ G+L+A+ N +G I +DMG+ Sbjct: 60 FMRIYNPDGSESGACGNATRCVADLLHRDGIAAPC-METVAGLLLAEINGNG-ICIDMGQ 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W+ +PLAR D + P+ L+ P SMGNPHA FFV DL D+ Sbjct: 118 PGLGWRDVPLAREMDTL------FLPLEAPGLKMPAACSMGNPHATFFV-ADLAELDIPV 170 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +HP+F E N+ A++ S + LR WERG GLT ACG+ ACA++V + Sbjct: 171 TGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNAVRRGLA 230 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 R V++ GG LLI W + + HV MTG A + G++ +++ Sbjct: 231 EREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIALES 272 >gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822] gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822] Length = 281 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 87/279 (31%), Positives = 133/279 (47%), Gaps = 11/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R D + A+ D ++ + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDRHFGIGADGVIFVLPGT-PQTDYQ 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ K++ +T+ G++ + + ++VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVTVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP + VSMGNPH I FVE ++ Sbjct: 122 MGPPQLQAAQIPTT--LVTATEKVINQPLSVGGKSWLVTCVSMGNPHCITFVE-NVDEIP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G H F + N V + L +R WERG G+T ACG+ ACA+VVA Sbjct: 179 LEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVAGLLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 H+++R +V++ GG L I W + + HV+MTG AK+ + G Sbjct: 239 HRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSG 277 >gi|238028905|ref|YP_002913136.1| Diaminopimelate epimerase [Burkholderia glumae BGR1] gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1] Length = 288 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 132/287 (45%), Gaps = 10/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D +T + + AL+ DQ++L+ D Sbjct: 3 LPFTKMHGAGNDFVVLDGTAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC VRF+ + T + G+L +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVRFVHDKGLTDKTTVRVQVSHGLLTLTLQENGEVVVDMGS 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P + R+ R VVSMGNPHA+ V+ D+ + + Sbjct: 123 PVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVVD-DVETFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G L+ H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 AEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKT 283 + V+V+ GG L I W + M G A +EG ++ Sbjct: 242 LLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEGVFELTA 288 >gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49] Length = 289 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 134/286 (46%), Gaps = 11/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ R R+S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVNDRGLTDRRSVRVQVMKGLITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P + + + R VSMGNPHA+ V+ D Y Sbjct: 123 APVFAPAQVPFDAAGLEGRAEGRDTLWPLDVGGRTRWITTVSMGNPHAVQVVD-DAEAYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++D+ Sbjct: 242 GLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDL 287 >gi|163757348|ref|ZP_02164437.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43] gi|162284850|gb|EDQ35132.1| diaminopimelate epimerase [Hoeflea phototrophica DFL-43] Length = 292 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 156/286 (54%), Positives = 196/286 (68%), Gaps = 1/286 (0%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+S+ V FAKM G+GN I+VIDMRG D +TS+A AL++ D T FDQIM IHD V Sbjct: 1 MEST-VPFAKMNGLGNDIVVIDMRGRSDAVTSEAAIALASGDRTGFDQIMAIHDIDLDGV 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D I I+N DGS Q+CGNG RCVV+ L S RKSFTF+T+ GIL A+E+ DG ISVDM Sbjct: 60 DYRIDILNRDGSRSQACGNGTRCVVQALASETGRKSFTFKTLAGILTAEEHEDGLISVDM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P W IPLA F R IGP++ L +P V++GNPHA+F+V+DD++ YDL Sbjct: 120 GRPEFAWDKIPLAEEFHDTTRIELQIGPIDAPVLHSPSAVAIGNPHAVFWVKDDVWSYDL 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG LL HP+F E N+SIARV +LD+RTWERG GLT ACGSAACA+ V++ Sbjct: 180 ERFGPLLENHPIFPERANISIARVIDDHTLDIRTWERGTGLTRACGSAACAAGVSAARTG 239 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 +T R V+V + GG L IEW +NNHV MTG A+ E+ G++D TG W Sbjct: 240 RTGRTVTVNVPGGPLEIEWRENNHVIMTGPAEWEFSGRVDPLTGAW 285 >gi|300692857|ref|YP_003753852.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07] gi|299079917|emb|CBJ52594.1| diaminopimelate epimerase [Ralstonia solanacearum PSI07] Length = 285 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 128/281 (45%), Gaps = 7/281 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D + T + A++ DQ++L+ VD RI N Sbjct: 1 MHGAGNDFVVLDGIETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNH 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG P+ + Sbjct: 61 DGGEVEHCGNGARCFVKFVTDRGLTDKRTIRVEVMHGIATLTMQPDGQVTVDMGAPVFEA 120 Query: 128 KLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +P + + VSMGNPHA+ V+ D + + G Sbjct: 121 ARLPFVPDGLPTRVEGADTQHALQINGRTEWLSTVSMGNPHAVQVVD-DAEAFPVLEDGP 179 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ H +F VN + ++ LR +ERG G T ACG+ ACA+VVA + Sbjct: 180 LIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAVVAGIRRGLLDSP 239 Query: 246 VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 V V GG L I W V MTG A +EG LD+ K Sbjct: 240 VKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDLDALK 280 >gi|37528457|ref|NP_931802.1| diaminopimelate epimerase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81572247|sp|Q7MYN5|DAPF_PHOLL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|36787895|emb|CAE17012.1| diaminopimelate epimerase (DAP epimerase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 274 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLINKRDIKVSTQSGRMVLSITNDDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + R VVSMGNPH + V D+ ++ Sbjct: 121 PEFEPHHVPF-----RALRAEKTYILRVAERTVLCGVVSMGNPHCVIQV-PDVETAEVDI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E N+ ++ + + LR +ERGVG T ACGS ACA+V Sbjct: 175 LGPALESHERFPERANIGFMQILNRGHIRLRVYERGVGETQACGSGACAAVAVGIQQQLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L I W ++MTG A ++G + + Sbjct: 235 DNHVRVDLPGGSLFICWDGPGKPLYMTGPAMHVYDGTIHL 274 >gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] Length = 387 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T+ + AL+ DQ++L+ D Sbjct: 101 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 160 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 161 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 220 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S + R VSMGNPHA+ V+ D Y Sbjct: 221 APVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVD-DAEAYP 279 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 280 VLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 339 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 340 GLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 387 >gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803] gi|2494041|sp|P74667|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803] Length = 279 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 145/281 (51%), Gaps = 9/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F+K G+GN +++D R + +T D L D ++ Q D Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQ-GGTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC+ +F ++ K++ T+ G++ + DG + VDMG Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEKTYRIHTLAGVITPQLLADGQVKVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP L +LIP + + VSMGNPH + FV+ D+ +L Sbjct: 122 EPQLLAELIPTTLA--PAGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTFVD-DVDSLNLT 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP FS+ N +V + L +R WERG G+T ACG+ ACA+VVA+ + Sbjct: 179 EIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAVLTGR 238 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +R +V++ GG L IEW +N ++MTG A++ + G+ +I Sbjct: 239 GDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQAEI 279 >gi|332527819|ref|ZP_08403857.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2] gi|332112214|gb|EGJ12190.1| diaminopimelate epimerase [Rubrivivax benzoatilyticus JA2] Length = 281 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 131/280 (46%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D G ++ + I L DQI++I VD Sbjct: 3 LRFTKMHGAGNDFVVLDATGAPLALSREQIRRLGDRRFGVGADQILVIERSTTPGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI N G EV+ CGNG RC VR++ T ET+ +L DG + VDM Sbjct: 63 RIFNNTGDEVEQCGNGSRCFVRYVVDHGLTDKTTIRVETVNNLLELSLAADGRVRVDMNR 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ D +P S V+SMGNPHA+ V D + +A+ Sbjct: 123 PVFDLARVPFDASGLTPRLVNGFELWPLADAGVEVAVLSMGNPHAVMRVAD-VDAAPVAA 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F VN +V S + LR +ER G T ACG+ ACA+VVA L Sbjct: 182 VGPRVESHARFPRRVNAGFLQVLSRSEVKLRVYERDAGETLACGTGACAAVVAGIRLGWL 241 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 +R V V GG LLIEW D++ V MTG A +EG++++ Sbjct: 242 DRRVEVHARGGDLLIEWPDDSASVLMTGPAVTVFEGEIEL 281 >gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061] gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061] Length = 280 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ + FDQ++++ D +D Sbjct: 7 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDFHY 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D I V+MGE Sbjct: 67 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVNMGE 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + ++ VV+MGNPH + VE D+ D+ Sbjct: 127 PDFEPQRVPF-----RANKAEKTYIIRAVERTVLCGVVAMGNPHCVIQVE-DVNTADVEV 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F E VN+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 181 LGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VSV + GG L I W +FMTG A ++G + + Sbjct: 241 DNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280 >gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142] gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142] Length = 290 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 141/282 (50%), Gaps = 11/282 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 +++F K +G+GN +++D R + +A+ D ++ D D Sbjct: 12 IMEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDD-QSDY 70 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF----LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE Q CGNG+RC+ RF KS+ +T+ GI++ + +G + V Sbjct: 71 TMRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKV 130 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L K IP + K + + + VSMGNPH I FVE ++ Sbjct: 131 DMGNPFLLAKEIPTTLT--KGEEKVINQFLEVGGQSWSVTCVSMGNPHCITFVE-NVATI 187 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G + H +F E N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 188 PLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAGVL 247 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +V++ GG L IEW + +N ++MTG A+ + G + Sbjct: 248 TGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVI 289 >gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4] gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688] gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus sp. SIP3-4] gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688] Length = 277 Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 135/283 (47%), Gaps = 12/283 (4%) Query: 5 MVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 M+ F KM+GIGN +VID ++T D I A+S DQ++++ Sbjct: 1 MMKLEFTKMQGIGNDFVVIDAYSQPVSLTPDQIRAISDRHFGVGCDQLLIVEHATTPEAA 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC V+F+ + +++ ET RG++ + +G ++V+ Sbjct: 61 FRYRIFNADGGEVEQCGNGARCFVKFVHDQGLTQQREICVETARGLIYPRLEDNGEVTVN 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P +P + + H + SMGNPHA+ V+ ++ Sbjct: 121 MGPPSFLPADLPFEAE----TIQSLYPLQLAHETVEVAIA-SMGNPHAVQLVD-NVDTAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G + HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ L Sbjct: 175 VAEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSGIRL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V GG L I W + V+MTG A + G + + Sbjct: 235 GHLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277 >gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437] Length = 280 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 145/283 (51%), Gaps = 14/283 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F KM G+GN +V+ A D ++ + + + D + Sbjct: 1 MMRFTKMHGLGNDFIVVTADTWPQEAPELARRLCDRRFGVGADGLVFLLPSR--AGDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118 RI+N DGSE + CGN +RCV ++ R+ +K ET G+ + DGS I V Sbjct: 59 RILNADGSEAEQCGNAVRCVAKYYYERISGAKKEIIVETGAGLQSVRLETDGSQVESICV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL+ +P+A +++ IG VSMGNPHA+ FV+ D + Sbjct: 119 DMGRPILEADRVPVALEGERVVAHPVKIG----EESFRFTAVSMGNPHAVIFVD-DAAAF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + ++G L HP+F N+ V S L++R WERGVG T ACG+ ACAS+VA+ Sbjct: 174 PVETWGPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACASLVAAVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +R V++ GG L IEW + ++ V+MTG A+ +EG+ + Sbjct: 234 NGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGEWN 276 >gi|323182581|gb|EFZ67985.1| diaminopimelate epimerase [Escherichia coli 1357] Length = 269 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 128/275 (46%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF+ + ++ T G +V D + V+MGEP + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P + ++ VVSMGNPH + V+ D+ + + G +L Sbjct: 121 SAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVETLGPVL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E N+ +V E + LR +ERG G T ACGS ACA+V V Sbjct: 175 ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V++ GG L I W H ++MTG A ++G + + Sbjct: 235 VELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 269 >gi|94495526|ref|ZP_01302106.1| diaminopimelate epimerase [Sphingomonas sp. SKA58] gi|94424914|gb|EAT09935.1| diaminopimelate epimerase [Sphingomonas sp. SKA58] Length = 266 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 105/277 (37%), Positives = 149/277 (53%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R +T A++ DQ+++I D DA D Sbjct: 1 MGRFSKMHGLGNDFVVIDARAAPVAMTEARARAIADRHAGIGCDQLIVIGDAPDA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 ++I N DGSEV++CGN RCV F+ + T T G+L A+ G SVDMG P Sbjct: 59 MQIFNADGSEVEACGNATRCVPLFIGHDV-----TIRTRAGLLDARLIDGG-ASVDMGAP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW IPLA + D + P + L P V++GNPH IFFV+ DL D A Sbjct: 113 RFDWNAIPLAYAMDTL------TMPASWEDLPAPAAVNVGNPHVIFFVD-DLDAVDTARL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G ++ + P+F + VN++ A+V + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPMIEQDPLFPQRVNVNFAQVVGENHIRLIVWERGAGLTRACGTGACATAVAAIRRKLAH 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L+I+W + MTG A ++G+ D Sbjct: 226 GPVTVTLPGGDLVIDWRPGGTIQMTGPATHVFDGEAD 262 >gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405] gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360] gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20] gi|254767097|sp|A3DK16|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405] gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360] gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20] gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313] Length = 280 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + ++ +N + A D ++LI + A D + Sbjct: 1 MRFTKMHGLGNDYIYVNCFEETVENPSEVAKKVSDRHFGIGSDGLVLIMPSERA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGN +RCV +++ R + ET+ GI V + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKAKLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + I VSMGNPHA+ +V+ ++ + Sbjct: 119 DMGEPILKPENIPVNSDKEIFRTEPVEIDGKEFK----VTCVSMGNPHAVSYVK-NVDIF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + HP+F + +N V +L +R WERG G T ACG+ ACA +VAS Sbjct: 174 PLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + R +VK+LGG L+IEW++ NNHV+MTG A K +EG++D+ Sbjct: 234 NGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDL 277 >gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12] gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12] Length = 287 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 135/283 (47%), Gaps = 7/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G GN +V+D + + + L+ DQI+L+ VD Sbjct: 3 VAFTKMHGAGNDFVVLDATRSPLALNAAQLRLLADRHFGVGADQILLVEAAPSPEVDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V ++ + ++ +T+ G++ + DG ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVAYVHGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDMGA 122 Query: 123 PILDWKLIPLARS-FDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D +P D + P++ V+SMGNPHA+ V+ D+ + Sbjct: 123 PVFDLPRVPFEAHGLRPRQVDGWEQWPLDLAGATAWVSVLSMGNPHAVQRVD-DVDTAPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP F VN ++ + + LR WERG G T ACG+ ACA+VVA Sbjct: 182 LRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACAAVVAGLRHG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 AV V+ GG L I W V MTG A ++G +D+ Sbjct: 242 WLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDLP 284 >gi|296313835|ref|ZP_06863776.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768] gi|296839564|gb|EFH23502.1| diaminopimelate epimerase [Neisseria polysaccharea ATCC 43768] Length = 283 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 146/284 (51%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID + I + FDQ++++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDAVSQNFTPEDVPIAEWADRFRGVGFDQLLVVGRSETEG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV CGNG RC RF+ + +K ET +G++ K + +G ++ Sbjct: 59 VDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGVIFPKLSDNGMVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D D G ++ V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVITVD-DVEC 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAAVVAGI 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|187476670|ref|YP_784693.1| diaminopimelate epimerase [Bordetella avium 197N] gi|115421256|emb|CAJ47761.1| diaminopimelate epimerase [Bordetella avium 197N] Length = 298 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 10/285 (3%) Query: 5 MV-DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDA 62 M+ +F KM G GN +V+D ++T + AL DQI+L+ D Sbjct: 7 MIWNFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGVGADQILLVEPATRPDADF 66 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC VRF+ + + E + G++V E D ++V+M Sbjct: 67 RYRIFNNDGSEVEHCGNGARCFVRFVHEQGLSSKNPLRAEIVSGLIVLDEGDDEQVTVEM 126 Query: 121 GEPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 G D +P + + +D ++ P+ + V++ NPHA+ V D+ Sbjct: 127 GTTRFDPAALPFDVSGLAQRQQGQDTLYVLPLPGGEIELS-AVAISNPHAVQVV-ADVDQ 184 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G + HP F+ VN ++ ++ LR +ERG G T ACG+ ACA+V A Sbjct: 185 APVSEVGAHIESHPRFARRVNAGFMQIQDRHNIRLRVYERGAGETLACGTGACAAVAAGI 244 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L I W+ + MTG A+ + G++DI Sbjct: 245 RRGLLDSPVRVQTRGGALTIAWNGEQ-LRMTGPAESVFSGQVDID 288 >gi|312797551|ref|YP_004030473.1| Diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454] gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica HKI 454] Length = 333 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 131/286 (45%), Gaps = 10/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D + T + L+ DQ++L+ VD Sbjct: 44 LKFTKMHGAGNDFVVLDGVRNMISPTPALVRYLADRNFGVGADQLLLVERPTLDGVDFKY 103 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ + ++ + G++ +G + VDMG Sbjct: 104 RIFNCDGKEVEHCGNGARCFVKFVRDTGLSQARTIRVQVQHGVITLSVQDNGEVLVDMGA 163 Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+L +P S D D H + VVSMGNPHA+ V+ D + Sbjct: 164 PVLAAPHVPFDTSGLTPARDGDDQLWPLDVHGSTQWISVVSMGNPHAVQIVD-DADAAPV 222 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ H F VN ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 223 NRDGPVIESHARFPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGIRRG 282 Query: 241 KTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V V+ GG L I W + V M G A +EGK+D+ Sbjct: 283 VLDSPVRVRTRGGTLTISWDGQRNSDASVMMAGPATTVFEGKIDVP 328 >gi|15676658|ref|NP_273802.1| diaminopimelate epimerase [Neisseria meningitidis MC58] gi|21362493|sp|Q9K060|DAPF_NEIMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|7225990|gb|AAF41173.1| diaminopimelate epimerase [Neisseria meningitidis MC58] Length = 283 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 180 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 239 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 240 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 280 >gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI] gi|229813238|sp|A5D193|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI] Length = 280 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 16/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K G+GN +++D ++ A+ D ++L+ A D Sbjct: 1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPSA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILV----AKENRDGSI 116 +RI N DGSE + CGN +RCV ++L R K+ ET+ G+++ +E R + Sbjct: 59 SMRIFNPDGSEAEMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPELLVEEGRVRLV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP L+ IP+ ++ + G + VSMGNPH + FV+ DL Sbjct: 119 RVDMGEPRLERSEIPMEGPPGRVLGEPLETGGAVYRI----TAVSMGNPHCVIFVQ-DLD 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G L+ HP F N+ +V + E + +R WERG G T ACG+ ACA+VVA Sbjct: 174 AVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAAVVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 T R V+V + G L IEW + HV+M+G A++ + G+ +T Sbjct: 234 VLNGYTGRRVTVHLKAGDLFIEWPEGKHVYMSGPAEEVFSGEYPYRT 280 >gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD] gi|122321974|sp|Q0BAY6|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD] Length = 289 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 135/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P S + R VSMGNPHA+ V+ D+ Y Sbjct: 123 APVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-DVEAYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 242 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 289 >gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106] gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106] Length = 284 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 16/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN ++ID R + + A+ + D ++ + D Sbjct: 3 IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTS-NTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----------SFTFETIRGILVAKENRD 113 +RI N D SE Q CGNG+RC+ +F+ R S+ +T+ G++ + D Sbjct: 62 MRIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILAD 121 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G + VDMG+P L IP + K D ++ VSMGNPH I FVE Sbjct: 122 GQVKVDMGQPRLLAVEIPTTLT--KADEKVVNVPLSVAEQSWKVTCVSMGNPHCITFVE- 178 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ LA G HP F E N +V + L +R WERG G T ACG+ ACA V Sbjct: 179 DVAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGACAVV 238 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VA +R+V+V++ GG L+IEW + ++M+G A++ + G+ Sbjct: 239 VAGVLTGNCDRSVTVELPGGNLMIEWSASERLYMSGPAERVFTGQW 284 >gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH] Length = 289 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 132/288 (45%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D+ + Sbjct: 123 APVFEPARVPFDTSGLGGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVD-DVEAFP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +D+ Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|269468224|gb|EEZ79914.1| diaminopimelate epimerase [uncultured SUP05 cluster bacterium] Length = 270 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 13/280 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+D + + +++ I AL+ FDQ+++I VD Sbjct: 1 MINFTKMHGLGNDFMVVDNSAGNISFSAEQIRALAQRHFGIGFDQLLMIESTNTKDVDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 I N DGSEV+ CGNG RC RF+ + + + ET G++ N D S+ VDMG Sbjct: 61 YVIYNSDGSEVEQCGNGARCFARFVREKGLSDKNPISVETKSGLISLFINDDHSVRVDMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP+ + +PL + + + V S GNPH + V+ D+ D+ Sbjct: 121 EPVFNPSDVPLIAPEESL---------YYSIEGYEVGVFSTGNPHCVMIVD-DVEGVDVE 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + + + + N+ ++ S ++LR +ERG G T ACGS ACA+V+ + + Sbjct: 171 TIALRIQQSNLLPNQANIGFMQIISRNEINLRVYERGSGETLACGSGACAAVIHGVRIGQ 230 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+ + GG LIE++ HVF++G A+ +EG +D+ Sbjct: 231 LDHKVTAHLRGGDALIEYNKGEHVFLSGPAQFVFEGWVDV 270 >gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2] gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2] Length = 281 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID + + I + FDQ++++ + A Sbjct: 3 IHFTKMHGLGNDFMVIDAINQAIELNPEQIRQWANRHFGIGFDQLLIVEPPKTADTLFTY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC R++ + K T G +V N G ++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARYVYDKGLTTEKEIPVGTASGRIVLHINDSGDVTVDMGR 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ IP + + VSMGNPHA+ VE ++ ++ Sbjct: 123 PMFTPTNIPFITECEATSYPLTLDDGSEWVID----AVSMGNPHAVLEVE-NVDTAPVSH 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F VN+ ++ + + LR +ERG G T ACG+ ACA+VV+ ++ Sbjct: 178 LGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAAVVSGIRRNRL 237 Query: 243 NRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKL 279 + V + GG L + W + V MTG A+ +EG++ Sbjct: 238 DSPCLVDVRGGRLSVAWTGKTQDSVLMTGPAQSVFEGQI 276 >gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91] gi|122314470|sp|Q0AIP0|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91] Length = 278 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 132/283 (46%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + F KM G+GN +VI+ ++T I L+ FDQ++++ ++ D Sbjct: 3 LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGG-D 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EV+ CGNG RC RF + + + ET RGI+ +G +SV+ Sbjct: 62 FRYRIFNADGGEVEQCGNGARCFARFVRDYNLTDKNTIRVETARGIITPTIENNGEVSVN 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IP + VS+GNPHA+ + D+ Sbjct: 122 MGVPQFEPAEIPFQAAQRMPVYPLQI-----GDKTIEISAVSIGNPHAVQII-PDIDLAP 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + HP+F E VN ++ + LR +ERG G T ACG+ ACA+VV Sbjct: 176 VTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAAVVCGILR 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V M GG L I W + V+MTG A +EG +D+ Sbjct: 236 GLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278 >gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424] gi|226724206|sp|B7KH06|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424] Length = 281 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 133/282 (47%), Gaps = 11/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + + A+ D ++ + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTS-QTDYQ 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ K KS+ +T+ G++ + ++VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGKSYRIDTLGGLMTPRLEAQEQVTVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP VSMGNPH I FVE D+ Sbjct: 122 MGLPRLLGSEIPTTLVSRT--EKVIDQPIEVAGQSWLVTCVSMGNPHCITFVE-DVKSIA 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G H F + N V + L +R WERG G+T ACG+ ACASVVA Sbjct: 179 LETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 K++R +V++ GG L I W + + HV+MTG AK+ + G + Sbjct: 239 GKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTGVYE 280 >gi|85373610|ref|YP_457672.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594] gi|122544848|sp|Q2NBR6|DAPF_ERYLH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84786693|gb|ABC62875.1| diaminopimelate epimerase [Erythrobacter litoralis HTCC2594] Length = 269 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 100/277 (36%), Positives = 142/277 (51%), Gaps = 17/277 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 V F KM G+GN +++D R T+ AL+ DQ++L+ A D Sbjct: 3 VSFTKMHGLGNDFIMLDARAESLPPMTAATARALADRKTGIGCDQVILLEPSDSA--DFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DG EV++CGN R V + G ++A G VDMG P Sbjct: 61 MRIFNADGGEVEACGNASRAVALLHGEAANVE------TSGGVIAIAPASGGARVDMGVP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW+ IPLA + D + PV L P V++GNPH +FFV+ D L + Sbjct: 115 RFDWEAIPLAYAMDTLSL------PVGWGELEAPAAVNVGNPHVVFFVD-DADAVPLDTM 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F E +N++IA +T ++L L WERGVGLT ACG+ ACA+ +A+ T Sbjct: 168 GPGIETDPLFPERINVNIASLTGDDALKLHVWERGVGLTRACGTGACATAIAAMRRGLTG 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R V+V + GG L IEW ++H+ MTG A + + G D Sbjct: 228 RKVAVTLPGGTLQIEWDADDHIIMTGPAAESFRGTFD 264 >gi|325140085|gb|EGC62614.1| diaminopimelate epimerase [Neisseria meningitidis CU385] Length = 301 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 141/281 (50%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I + FDQ++++ + VD Sbjct: 20 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEGVDF 79 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 80 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 139 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P IP + D D G ++ V+MGNPHA+ V+ D+ + Sbjct: 140 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L Sbjct: 198 RETGSLIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLG 257 Query: 241 KTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 258 LLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAEAVFEGEL 298 >gi|240123026|ref|ZP_04735982.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|240127732|ref|ZP_04740393.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] gi|268681653|ref|ZP_06148515.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|268686123|ref|ZP_06152985.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] gi|268621937|gb|EEZ54337.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID332] gi|268626407|gb|EEZ58807.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-93-1035] Length = 283 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID I A + FDQ++++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++ Sbjct: 59 VDFRYRIFNADGSEVVQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D D G ++ V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVRETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu] Length = 289 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALANRHFGVGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + ++S E ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVLDKRLTDKRSVRVEVMKGLITLTMQENGEVVVDMG 122 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P + + + R VSMGNPHA+ V+ D Y Sbjct: 123 APVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DAERYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G L+ +H F++ VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLAEGPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 242 GLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDLAA 289 >gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille] Length = 276 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 98/277 (35%), Positives = 140/277 (50%), Gaps = 7/277 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID N T L+ DQ++++ Q A VD RI N Sbjct: 1 MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R VRF+T + +++ ET+ GI+ + +G I+VDMG PIL+ Sbjct: 61 DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120 Query: 128 KLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLASFGN 185 + +P R + P++ N VVSMGNPHA+ V D+ + G Sbjct: 121 EDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVV-ADVEEAPVREDGV 179 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 180 LIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGLLVSP 239 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V+ GG L+I W ++ V MTG A +EG+++I Sbjct: 240 VKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276 >gi|209542703|ref|YP_002274932.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] Length = 279 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 18/285 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G+GN +V+D R +T I AL+ DQ +++ D Sbjct: 2 MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DG+E +CGN RCV L + R+ +T G+L A+ + G ++VDMG P Sbjct: 62 VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LDW+ +PLAR+ D + +P SMGNPHA FF++D L + + Sbjct: 122 ALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA- 170 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL P+F E N+ A V S L LR WERG GLT ACGS ACA+VV + Sbjct: 171 GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVE 230 Query: 244 RAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282 R +V M GG L + W + HV MTG A + G D + Sbjct: 231 RTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 275 >gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5] Length = 278 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 104/285 (36%), Positives = 141/285 (49%), Gaps = 18/285 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G+GN +V+D R +T I AL+ DQ +++ D Sbjct: 1 MTPFHKMHGLGNDFVVVDERAERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVL 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DG+E +CGN RCV L + R+ +T G+L A+ + G ++VDMG P Sbjct: 61 VRFFNADGTEAGACGNASRCVAALLWRQEGRRETVLQTRAGLLPARVDDAGVVTVDMGRP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LDW+ +PLAR+ D + +P SMGNPHA FF++D L + + Sbjct: 121 ALDWRDVPLARAADTLHL----------PLAGDPAAASMGNPHATFFLDDMLDLDPVVA- 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL P+F E N+ A V S L LR WERG GLT ACGS ACA+VV + Sbjct: 170 GPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNAVRRGLVE 229 Query: 244 RAVSVKMLGGGLLIEWH------DNNHVFMTGEAKKEWEGKLDIK 282 R +V M GG L + W + HV MTG A + G D + Sbjct: 230 RTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGTFDPE 274 >gi|307294712|ref|ZP_07574554.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1] gi|306879186|gb|EFN10404.1| diaminopimelate epimerase [Sphingobium chlorophenolicum L-1] Length = 266 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 104/277 (37%), Positives = 148/277 (53%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R ++T A++ DQ++LI + A D Sbjct: 1 MGRFSKMHGLGNDFVVIDARETALDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCV F + ET G+L AK G SVDMG+P Sbjct: 59 MRIFNSDGSEVEACGNATRCVPLF-----IGRDVLIETKAGLLDAKAVDGG-ASVDMGQP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W IPL+ + D + PV+ L P V++GNPH IFFV+ DL + Sbjct: 113 RLEWDAIPLSYAMDTL------TMPVSWEDLPAPVAVNVGNPHVIFFVD-DLDGVNFDRL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ P+F VN++ A++ + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPLIEHDPLFPARVNVNFAQMVGDNHIRLIVWERGAGLTRACGTGACATAVAAVRRKLVS 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W H+ MTG A ++G+ D Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262 >gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS] gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS] Length = 300 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 138/287 (48%), Gaps = 11/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGIDFQY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC +RF+ + +T+ G++ + DG ++VDMG Sbjct: 63 VIHNADGGEVEQCGNGARCFMRFVKEHKLTDKTQVRVQTLAGVIEPRMGADGRVTVDMGA 122 Query: 123 PILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 PI + +P A+ ++ +G + + V+SMGNPHA+ V+ ++ Sbjct: 123 PIFEAARVPFDTAGLDAQPDGSWEKWHLALGTRAGSPIVSVAVLSMGNPHAVQVVD-NVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G + HP F + VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 TAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 L V V+ GG L IEW + V MTG A +EG +D+ Sbjct: 242 IRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDIDVP 288 >gi|240115186|ref|ZP_04729248.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|260440996|ref|ZP_05794812.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] gi|268600866|ref|ZP_06135033.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|291044324|ref|ZP_06570033.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] gi|268584997|gb|EEZ49673.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID18] gi|291011218|gb|EFE03214.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI2] Length = 283 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID I A + FDQ++++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++ Sbjct: 59 VDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D D G ++ V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVYLESGIQPVSCVNMGNPHAVIVVD-DVEC 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVRETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|59800783|ref|YP_207495.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090] gi|194098069|ref|YP_002001117.1| diaminopimelate epimerase [Neisseria gonorrhoeae NCCP11945] gi|239998527|ref|ZP_04718451.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|240013652|ref|ZP_04720565.1| diaminopimelate epimerase [Neisseria gonorrhoeae DGI18] gi|240016091|ref|ZP_04722631.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA6140] gi|240080233|ref|ZP_04724776.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|240112446|ref|ZP_04726936.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|240117470|ref|ZP_04731532.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|240120722|ref|ZP_04733684.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID24-1] gi|240125278|ref|ZP_04738164.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|254493249|ref|ZP_05106420.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291] gi|268594387|ref|ZP_06128554.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|268596384|ref|ZP_06130551.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|268598514|ref|ZP_06132681.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|268603172|ref|ZP_06137339.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|268683880|ref|ZP_06150742.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|293399514|ref|ZP_06643667.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62] gi|59717678|gb|AAW89083.1| putative diaminopimelate epimerase [Neisseria gonorrhoeae FA 1090] gi|193933359|gb|ACF29183.1| DapF [Neisseria gonorrhoeae NCCP11945] gi|226512289|gb|EEH61634.1| diaminopimelate epimerase [Neisseria gonorrhoeae 1291] gi|268547776|gb|EEZ43194.1| diaminopimelate epimerase [Neisseria gonorrhoeae 35/02] gi|268550172|gb|EEZ45191.1| diaminopimelate epimerase [Neisseria gonorrhoeae FA19] gi|268582645|gb|EEZ47321.1| diaminopimelate epimerase [Neisseria gonorrhoeae MS11] gi|268587303|gb|EEZ51979.1| diaminopimelate epimerase [Neisseria gonorrhoeae PID1] gi|268624164|gb|EEZ56564.1| diaminopimelate epimerase [Neisseria gonorrhoeae SK-92-679] gi|291610083|gb|EFF39205.1| diaminopimelate epimerase [Neisseria gonorrhoeae F62] gi|317163802|gb|ADV07343.1| diaminopimelate epimerase [Neisseria gonorrhoeae TCDC-NG08107] Length = 283 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID I A + FDQ++++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDVPIAAWADRFRGVGFDQLLVVGCSETEG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV CGNG RC RF+ + +K ET +GI+ K + +G ++ Sbjct: 59 VDFRYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETAKGIIFPKLSDNGMVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D D G ++ V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G+ + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 177 APVRETGSRIEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGI 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + V V + GG L IEW V MTG A+ +EG+L Sbjct: 237 RLGLLDEGKTVEVVLPGGTLYIEWACGGDVMMTGPAETVFEGEL 280 >gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1] gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616] gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1] Length = 289 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 137/288 (47%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T+ + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S + R VSMGNPHA+ V+ D Y Sbjct: 123 APVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVD-DAEAYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 242 GLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289 >gi|284050332|ref|ZP_06380542.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca] Length = 286 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 138/287 (48%), Gaps = 11/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I A+ D ++ D + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ + + T G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP S + + + + VSMGNPH I FV+ D+ Sbjct: 122 MGLPRLLAAEIPTTLSENSLKV--IDVPLQVAGQPWSVTCVSMGNPHCITFVD-DVASVP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 + +R V+V++ GG L IEW + ++MTG A+ ++G+L + Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQLTFPINE 285 >gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017] gi|189082824|sp|B0C312|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017] Length = 283 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 134/285 (47%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAF 63 V+F K +G+GN ++ID R +T D + + D ++ + D Sbjct: 3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPE-GDTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISV 118 +RI N DGSE + CGNG+RC+ RFL + T T+ G + DG + V Sbjct: 62 MRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKV 121 Query: 119 DMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMG P L + IP L D + + + VSMGNPH I FV+ DL Sbjct: 122 DMGPPFLVPQEIPTTLGEGTDPVVNQPLEVAGQSWP----VTCVSMGNPHCITFVD-DLE 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D + G HP+F + +N +V + L + WERG G T ACG+ ACA +VA Sbjct: 177 AIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLVAG 236 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 K+ ++++ GG L I W + VFMTG A+K + G + Sbjct: 237 VLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTGIYE 281 >gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147] Length = 293 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 133/287 (46%), Gaps = 11/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S + R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + +HP F++ VN + S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + + V+V GG L I W +N + M G A +EG +D+ Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDLS 288 >gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668] gi|166224251|sp|A3N4H9|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668] Length = 289 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + + P F + VN +V S ++LR +ERG G T ACG+ ACA+V A Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIELPA 289 >gi|332969969|gb|EGK08969.1| diaminopimelate epimerase [Kingella kingae ATCC 23330] Length = 282 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 7/281 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID ++ I + FDQ++++ Q VD Sbjct: 4 LKFSKMHGLGNDFMVIDAINQTFEPRAEQIAQWANRYTGIGFDQLLVVEKAQSDDVDFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T + ET RGI+ + N DG ++V+MG+ Sbjct: 64 RIFNADGGEVEQCGNGARCFVKFVTEQGLTDKPEIVVETARGIIKPRLNDDGLVTVNMGQ 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P +P + D+ VN + +VSMGNPHA+ + D+ + + Sbjct: 124 PRFAPDDVPFVLRSGEKADDK-TFIVVNGIDSAEMSLVSMGNPHAV-MLVGDVATAPVEN 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +GN L H F VN+ ++ + + LR +ERG G T ACG+ ACA+VV+ L Sbjct: 182 WGNALQNHARFPARVNVGFMQIVDAQHIKLRVFERGSGETQACGTGACAAVVSGVRLSLL 241 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V + GG L I W D V MTG A + G++ + Sbjct: 242 TAGEPIRVSLPGGDLYISWQDGGDVMMTGPAVTVFTGEIAV 282 >gi|126740999|ref|ZP_01756682.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6] gi|126717925|gb|EBA14644.1| diaminopimelate epimerase [Roseobacter sp. SK209-2-6] Length = 284 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 17/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-DASVDAF 63 + F KM G+GN +V+D R ++T ++ FDQ+ LI + ++ DA Sbjct: 12 LPFMKMHGLGNDFVVVDARHLKLDVTPALAKGIAHRRFGIGFDQLTLIESPKANSPADAH 71 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGS +CGN RCV R L + + T RG L+A ++ DG SV+MG+P Sbjct: 72 LLFYNADGSTSAACGNATRCVARHLMAESGKSELHLTTDRGDLLAHDSGDGLTSVNMGQP 131 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W +PLA D ++ P MGNPH FFVE + L F Sbjct: 132 QLLWDQVPLAEEVDTLEL----------PIEGGPTATGMGNPHCTFFVE-NADLIPLEEF 180 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G HP++ E N+ +A + + + +R WERGVG+T A GS++CA+ VA+ T Sbjct: 181 GPRYEHHPLYPERTNVQVAHIVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTG 240 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 R V V + GG L I+W ++ V+MTG G T ++++ Sbjct: 241 RKVQVDLDGGTLWIDWREDG-VWMTGPTMHVSSGSF---TREFLES 282 >gi|299533135|ref|ZP_07046520.1| diaminopimelate epimerase [Comamonas testosteroni S44] gi|298718912|gb|EFI59884.1| diaminopimelate epimerase [Comamonas testosteroni S44] Length = 296 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 13/294 (4%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M M + F KM+G GN +V+D +++ L+ DQI+ + Sbjct: 1 MCGIMQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAE 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 VD I N DG EV+ CGNG RC R++ + + +T+ G++ + + +G + Sbjct: 61 GVDFEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRV 120 Query: 117 SVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +VDMG P LD +P + + VSMGNPHA+ Sbjct: 121 TVDMGAPQLDPAKVPFTTDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQL 180 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V+ D+ + G L+ H F + VN ++ + + LR +ERG G T ACG+ AC Sbjct: 181 VD-DVDAALVGLHGPLIENHARFPQRVNAGFMQILNRGEVRLRVYERGAGETLACGTGAC 239 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A+VVA ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 240 AAVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293 >gi|238022271|ref|ZP_04602697.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147] gi|237866885|gb|EEP67927.1| hypothetical protein GCWU000324_02178 [Kingella oralis ATCC 51147] Length = 314 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 137/282 (48%), Gaps = 9/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID S I A + FDQ++L+ Q + D Sbjct: 32 LKFSKMHGLGNDFMVIDGINQVFTPNSAHIAAWANRHFGIGFDQLLLVERAQTPAADFRY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI N DG EVQ CGNG RC +F+ + ET GI+ + +G ++VDMG Sbjct: 92 RIFNADGGEVQQCGNGARCFAKFVYDKGLTDKTHIAVETAAGIIKPQIQPNGLVTVDMGA 151 Query: 123 PILDWKLIPLARSFDKMDRD---RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + IP D + I N +VSMGNPHA+ V+ D Sbjct: 152 PRVLPDDIPFRLPADGSETAGALTHQIVWDNRQPAIAVSLVSMGNPHAVLRVD-DTKTAP 210 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G L +HP F E VN+ ++ + LR +ERG G T ACG+ ACA+VVA Sbjct: 211 VAEIGAALQQHPQFPERVNVGFMQLLDPTHIALRVFERGAGETLACGTGACAAVVAGMRQ 270 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L ++WH +HV MTGEA ++G+L Sbjct: 271 GWLAAGETVQVSLRGGDLFVQWHSGSHVMMTGEAVWVFDGEL 312 >gi|264680264|ref|YP_003280174.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2] gi|262210780|gb|ACY34878.1| diaminopimelate epimerase [Comamonas testosteroni CNB-2] Length = 296 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 136/294 (46%), Gaps = 13/294 (4%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M M + F KM+G GN +V+D +++ L+ DQI+ + Sbjct: 1 MCGIMQIRFTKMQGAGNDFVVLDETQARLGLSTAQYRYLANRHFGVGADQILTVRPAPAE 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 VD I N DG EV+ CGNG RC R++ + + +T+ G++ + + +G + Sbjct: 61 GVDFEYVIHNADGGEVEQCGNGARCFARYVHDKGLTDKSVIRVQTLSGVIAPEIHGNGRV 120 Query: 117 SVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +VDMG P LD +P + + VSMGNPHA+ Sbjct: 121 TVDMGAPQLDPAKVPFTNDGLQAETLGSTQKWPLTLDTPLQPATVWIAAVSMGNPHAVQL 180 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V+ D+ + G L+ H F + VN ++ + + LR +ERG G T ACG+ AC Sbjct: 181 VD-DVDAALVGLHGPLIENHARFPQRVNAGFMQILNRSEVRLRVYERGAGETLACGTGAC 239 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 A+VVA ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 240 AAVVAGIGWGLLDQRVDVHTRGGLLTIEWTGGAHDRVRMTGPAEFVFEGQIDIP 293 >gi|294012736|ref|YP_003546196.1| diaminopimelate epimerase [Sphingobium japonicum UT26S] gi|292676066|dbj|BAI97584.1| diaminopimelate epimerase [Sphingobium japonicum UT26S] Length = 266 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 104/277 (37%), Positives = 149/277 (53%), Gaps = 16/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M F+KM G+GN +VID R ++T A++ DQ++LI + A D Sbjct: 1 MGRFSKMHGLGNDFVVIDARESTLDMTEARAMAIADRHAGIGCDQLILIGNSDRA--DVS 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCV F+ + ET G+L AK G SVDMG+P Sbjct: 59 MRIFNSDGSEVEACGNATRCVPLFV-----GRDVLIETKAGLLDAKAVDGG-ASVDMGQP 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W IPLA + D + PV+ L P V++GNPH IFF++ DL + Sbjct: 113 RLEWDAIPLAYAMDTL------TMPVSWEDLPAPVAVNVGNPHVIFFLD-DLDGVNFDRL 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ P+F VN++ A++ + L WERG GLT ACG+ ACA+ VA+ + Sbjct: 166 GPLIEHDPLFPARVNVNFAQIAGNNHIRLVVWERGAGLTRACGTGACATAVAAVRRKLAS 225 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L+I+W H+ MTG A ++G+ D Sbjct: 226 GPTTVSLPGGDLVIDWTPGGHIMMTGPATHVFDGEAD 262 >gi|315497312|ref|YP_004086116.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48] gi|315415324|gb|ADU11965.1| diaminopimelate epimerase [Asticcacaulis excentricus CB 48] Length = 280 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 106/280 (37%), Positives = 153/280 (54%), Gaps = 10/280 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D R ++ + A FDQ++ I AS DAF+R Sbjct: 4 PFLKMNGLGNDFVVVDARQTPFRPSAAQVKAWGDRASGIGFDQLIAIEGA--ASGDAFMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----GSISVDMG 121 + N DG V++CGN +RCV +L +T+ G AK G +SVDMG Sbjct: 62 VWNSDGGPVETCGNALRCVGWYLDRDAPGNDLHIDTLGGATAAKVLERDAKTGMVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L W IPL+ + + +GP++ P VSMGNPH +FFVE D+ D+ Sbjct: 122 APRLAWTQIPLSEEMNTERLE-LQVGPIDAPLYHTPCAVSMGNPHVVFFVE-DVAAVDVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+L+ HP+F EGVN+ A+V ++ +R WERG G+T ACG+ ACA++VA Sbjct: 180 RTGSLIENHPLFPEGVNVEFAQVIDRNTIRMRVWERGAGITKACGTGACATLVACARRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 ++R +V M GG L I W ++HV MTG + E+EG+L+ Sbjct: 240 SDRHATVIMDGGPLHILWRQADDHVIMTGPVEVEFEGQLN 279 >gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39] Length = 295 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 3 SSM-VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 S M ++F K G+GN ++ID R + I A+ D ++ D + Sbjct: 7 SVMAIEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPG-DGA 65 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ +F+ + + T G++ + DG Sbjct: 66 SDYTMRIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQ 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L IP S + + + + VSMGNPH I FV+ D+ Sbjct: 126 VKVDMGLPRLLAAEIPTTLSENSLKV--IDVPLQVAGQPWSVTCVSMGNPHCITFVD-DV 182 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 183 ASVPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVA 242 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + +R V+V++ GG L IEW + ++MTG A++ ++G+L Sbjct: 243 GVLTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQL 287 >gi|59713091|ref|YP_205867.1| diaminopimelate epimerase [Vibrio fischeri ES114] gi|75431420|sp|Q5E1W7|DAPF_VIBF1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|59481192|gb|AAW86979.1| diaminopimelate epimerase [Vibrio fischeri ES114] Length = 276 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 96/279 (34%), Positives = 139/279 (49%), Gaps = 10/279 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + + S + T +G ++ K D I+V+MGEP Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + IP ++ ++ V+ L + VSMGNPH V DD+ YD+ + Sbjct: 124 VFEPNKIPFKA----TQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKY 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ H F E VN ++ S + LR +ERG G T ACGS AC +V Sbjct: 178 GQLVESHERFPERVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLG 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G+L I Sbjct: 238 EEVKVSLPGGDLHIVWQGPGKPLFMTGPATHVYDGQLSI 276 >gi|121997990|ref|YP_001002777.1| diaminopimelate epimerase [Halorhodospira halophila SL1] gi|166224261|sp|A1WWB3|DAPF_HALHL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|121589395|gb|ABM61975.1| diaminopimelate epimerase [Halorhodospira halophila SL1] Length = 287 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 10/284 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME +GN +V+D ++T + I L+ DQ+++ + D Sbjct: 1 MRFTKMEALGNDFVVLDGIRQRLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+EV+ CGNG+RC+ RFL ET I A+ DG +SVDMG Sbjct: 61 RIFNADGTEVEHCGNGVRCLARFLVDEGLAAPGVLRIETDGRITEAEPRDDGQVSVDMGP 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IP + + VSMGNPHA+ V+ D+ +A Sbjct: 121 PELEPARIPFQAPVRQEAYRLATSRGEQTIG-----AVSMGNPHAVLRVD-DMTGAPVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +HP F VN+ V + + + LR +ERGVG T ACG+ ACA+VVA Sbjct: 175 LGPEIERHPRFPRRVNVGFMEVCTRDRIRLRVFERGVGETPACGTGACAAVVAGRLRDWL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGK 285 + V+V++ GG L+I W V+MTG A+ + G++++ Sbjct: 235 DAPVTVELTGGVLVIHWLGPGRSVWMTGPARTVFRGEIELPASA 278 >gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264] gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264] gi|123538287|sp|Q2T269|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264] Length = 289 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 131/288 (45%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +D+ Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|85060324|ref|YP_456026.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans'] gi|123518670|sp|Q2NQF4|DAPF_SODGM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84780844|dbj|BAE75621.1| diaminopimelate epimerase [Sodalis glossinidius str. 'morsitans'] Length = 274 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 136/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF + + ++ T G +V D S+ V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRMKNLTNKRDIHVSTQTGRMVLTVTEDDSVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D + + + + + L VVSMGNPH + V+ + + +A+ Sbjct: 121 PNFDPQQVLFRAA---RVEKTYIMRAAEQTVLCG--VVSMGNPHCVIAVD-SVDNAPVAT 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V + + LR +ERG G T ACGS ACA+V + Sbjct: 175 LGPVLESHERFPERANIGFMQVLNRGHIRLRVYERGAGETQACGSGACAAVAVGISQGQL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 AEQVQVELTGGRLAISWRGPGHPLYMTGPATHIYDGFIHL 274 >gi|126730998|ref|ZP_01746807.1| diaminopimelate epimerase [Sagittula stellata E-37] gi|126708714|gb|EBA07771.1| diaminopimelate epimerase [Sagittula stellata E-37] Length = 279 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 146/287 (50%), Gaps = 18/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 +++ + F KM G+GN +VID R +T + L+ FDQ+ LI + Sbjct: 8 RATGLPFMKMHGLGNDFVVIDARARSVQVTPELAMRLADRHMGVGFDQLALIEPG--GNA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + +N DGS +CGN RC+ R L + + T G L A + +G SV+M Sbjct: 66 DAHLVFLNSDGSTSAACGNATRCIARHLMTETGKDRLVLTTDHGALQAVDTGNGMTSVNM 125 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P+LDW+ IPLA D + +P SMGNPH FFV D DL Sbjct: 126 GPPVLDWQNIPLASEVDTLHL----------PIDGDPVATSMGNPHCTFFV-ADAEAVDL 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG + HP++ + N+ +A + + L +R WERG GLT A GS++CA+ VA+ Sbjct: 175 TDFGPRIEHHPLYPQRTNVQVATLIGPDHLRMRVWERGAGLTLASGSSSCATAVAAARRG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 T RAV + + GG L ++W ++ V+MTG + G L T +W+ Sbjct: 235 LTGRAVHIDLDGGTLHVDWREDG-VWMTGPTSHVFTGTL---TAEWL 277 >gi|296114904|ref|ZP_06833552.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769] gi|295978610|gb|EFG85340.1| diaminopimelate epimerase [Gluconacetobacter hansenii ATCC 23769] Length = 274 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 142/286 (49%), Gaps = 18/286 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++S F KM G+GN +++D R ++T I ALS DQ +++ Sbjct: 1 MKTS---FYKMHGLGNDFVIMDERASRLDLTPARIAALSDRQRGIGCDQFVVLRPACRDG 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D F+R N DG+E +CGN RCV + + +T G+L + DG I+VD Sbjct: 58 ADVFVRFFNADGTESGACGNASRCVAALIGDERGTMAPVLQTRAGLLPTRIAGDGVITVD 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA-IFFVEDDLYHY 178 MG P LDW+ IPL R D + + +P SMGNPHA +F D Sbjct: 118 MGPPALDWRDIPLVREVDTLHLPLW----------GDPAAASMGNPHATVFLDVGDTTDP 167 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + P+F E N+ A+V + + + LR WERG GLT ACGS ACA+VV + Sbjct: 168 RVR--GPAMECDPLFPERANIGFAQVRARDDMRLRVWERGAGLTLACGSGACAAVVNAVR 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 R V+M GG L + W + + HV M+G A +EG + + T Sbjct: 226 RGLVGRTCVVEMDGGVLSVTWRESDGHVLMSGPAVMSFEGTVALDT 271 >gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315] gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315] Length = 309 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 135/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMG 142 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P + ++ R VSMGNPHA+ V+ D Y Sbjct: 143 APVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DAEAYP 201 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 202 VLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 261 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 262 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLNA 309 >gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246] Length = 280 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 131/283 (46%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN + +D A+ D ++LI + A DA Sbjct: 1 MQFTKMHGLGNDYVYVDCVRQKPPADPAALARAVSDRHFGIGSDGLILICPSEKA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN------RDGSIS 117 +R+ N DGSE + CGNG+RCV +F+ R + G V + + + Sbjct: 59 MRMFNADGSESEMCGNGVRCVAKFVHDRGIATKPRLKIETGRGVLTLDLEVRAGKAERVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPIL+ IP + VSMGNPHA+ + + D+ Sbjct: 119 VNMGEPILESAKIPTTLPGAPPVNAKLVCAA---PTPWEVTCVSMGNPHAVIYCD-DVAK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L G L P F +N+ +V S + +RTWERG G+T ACG+ AC+ VA Sbjct: 175 VELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGACSVCVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 H+T R + + GG L +EW + ++ V+MTG A + + G+ Sbjct: 235 LTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPATEVFTGEW 277 >gi|126734339|ref|ZP_01750086.1| Diaminopimelate epimerase [Roseobacter sp. CCS2] gi|126717205|gb|EBA14069.1| Diaminopimelate epimerase [Roseobacter sp. CCS2] Length = 281 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 15/281 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 SS + F KM G+GN +V+D RG + A++ FDQ+ ++ + D Sbjct: 15 SSFLPFMKMHGLGNDFVVVDERGITPRVDKAVAVAIADRHRGVGFDQLAVM--SETPDAD 72 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS+ +CGN RC+ R + + + T +T RGIL AK+ +G SV+MG Sbjct: 73 VRLVFWNSDGSQAGACGNATRCIARHVMDQTGAAALTLKTERGILQAKDAGNGLTSVNMG 132 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW+ +PLA + D ++ P MGNPH FFV D DLA Sbjct: 133 QPQLDWQHVPLAHAMDTLEL----------PIKGAPTATGMGNPHCTFFV-YDAEAIDLA 181 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP++ E N+ A + L +R WERGVG+T A GS++CA+ VA+ Sbjct: 182 TKGAELEHHPLYPERTNVQFASLIGPNHLRMRVWERGVGITLASGSSSCATAVAAARRGL 241 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T+R V++ + GG L I W D+ V+MTG ++G+ + Sbjct: 242 TDRDVTIDLDGGTLQISWRDDG-VWMTGPTAHVFDGQWRLS 281 >gi|120609493|ref|YP_969171.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1] gi|166224234|sp|A1TKA9|DAPF_ACIAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120587957|gb|ABM31397.1| diaminopimelate epimerase [Acidovorax citrulli AAC00-1] Length = 292 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 133/288 (46%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC R++ + T +T+ G++ + DG ++VDMG Sbjct: 63 VIHNADGGEVEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTVDMGR 122 Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P D +P S +G + + VVSMGNPHA+ V D+ Sbjct: 123 PRFDPAEVPFDASGLAPAARGAGQTWPLALGAGADAQVVDVAVVSMGNPHAVQLVG-DVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ H F + VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 AAPVAHTGPLIEGHARFPQRVNAGYLQIEDRARVRLRVYERGAGETLACGTGACAAVAAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 L + V V+ GG L I W + VFMTG A +EG++DI Sbjct: 242 IRLGLLDARVDVRTRGGLLTIAWSGDPSESVFMTGPATTVFEGQIDIP 289 >gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43] Length = 289 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 134/289 (46%), Gaps = 13/289 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ R E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDRGLTDEASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P+ + +P + D PVN R VVSMGNPHA+ V+ D Sbjct: 123 APVFEPARVPFDASGLEGRREGADTLWPLPVNG-ATRWISVVSMGNPHAVQIVD-DAKAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G + +HP F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 181 PVLADGPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIR 240 Query: 239 LHKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 241 RGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIELPA 289 >gi|221065121|ref|ZP_03541226.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1] gi|220710144|gb|EED65512.1| Diaminopimelate epimerase [Comamonas testosteroni KF-1] Length = 296 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 90/294 (30%), Positives = 138/294 (46%), Gaps = 13/294 (4%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M M + F KM+G GN +V+D +++ L+ DQI+ + Sbjct: 1 MCGIMQIRFTKMQGAGNDFVVLDETQARLGLSAAQYRYLANRHFGVGADQILTVRPAPSE 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI 116 VD I N DG EV+ CGNG RC R++ R + +T+ G++ + + +G + Sbjct: 61 GVDFEYVIHNADGGEVEQCGNGARCFARYVHDRGLTDKSVIRVQTLSGVIAPEIHANGRV 120 Query: 117 SVDMGEPILDWKLIPLARS------FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +VDMG P LD +P + + + VSMGNPHA+ Sbjct: 121 TVDMGAPQLDPVKVPFSTEGLQAETLGSAQKWPLTLDTPVQPATVWIAPVSMGNPHAVQL 180 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V+ D+ + G L+ H F + VN ++ + ++LR +ERG G T ACG+ AC Sbjct: 181 VD-DVNAAAVEVHGPLIESHVRFPQRVNAGFMQIVNRGEVNLRVYERGAGETLACGTGAC 239 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 A+VVA ++ V V GG L IEW + V MTG A+ +EG++DI Sbjct: 240 AAVVAGIGWGLLDQRVDVHTRGGLLTIEWAGAAQDRVRMTGPAEFVFEGQIDIP 293 >gi|296113697|ref|YP_003627635.1| diaminopimelate epimerase [Moraxella catarrhalis RH4] gi|295921391|gb|ADG61742.1| diaminopimelate epimerase [Moraxella catarrhalis RH4] gi|326562437|gb|EGE12756.1| diaminopimelate epimerase [Moraxella catarrhalis 7169] gi|326562806|gb|EGE13101.1| diaminopimelate epimerase [Moraxella catarrhalis 46P47B1] gi|326563473|gb|EGE13736.1| diaminopimelate epimerase [Moraxella catarrhalis 103P14B1] gi|326569145|gb|EGE19207.1| diaminopimelate epimerase [Moraxella catarrhalis BC1] gi|326570631|gb|EGE20667.1| diaminopimelate epimerase [Moraxella catarrhalis BC7] gi|326571338|gb|EGE21355.1| diaminopimelate epimerase [Moraxella catarrhalis BC8] gi|326572967|gb|EGE22946.1| diaminopimelate epimerase [Moraxella catarrhalis CO72] gi|326573783|gb|EGE23740.1| diaminopimelate epimerase [Moraxella catarrhalis 101P30B1] gi|326574795|gb|EGE24729.1| diaminopimelate epimerase [Moraxella catarrhalis O35E] Length = 299 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 13/299 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ FDQ++++ +D Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC F+ +R ++ ET GI++ NR G + VDMG Sbjct: 62 YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP + + +V ++GNPHAI V+D + D+ Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPV--QLYVANIGNPHAIIKVDD-VLDADVD 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F E VN++ +V + + +R +ERGVG T ACG+ ACASV Sbjct: 179 RLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREGW 238 Query: 242 TNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI-----KTGKWIKKNEDD 293 + V ++ + GG L I W D + MTG +EG G + N DD Sbjct: 239 LDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297 >gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786] Length = 293 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 134/287 (46%), Gaps = 11/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ E G+++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDNGLTDKASVRVEVKHGVIMLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S + R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + +HP F++ VN + S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLVDGPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + + V+V GG L I W +N + M G A +EG +D+ Sbjct: 242 GQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDLS 288 >gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237] gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237] Length = 289 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVREHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|148261481|ref|YP_001235608.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5] gi|166224235|sp|A5G1F7|DAPF_ACICJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146403162|gb|ABQ31689.1| diaminopimelate epimerase [Acidiphilium cryptum JF-5] Length = 277 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 103/275 (37%), Positives = 139/275 (50%), Gaps = 10/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +V+D R ++ A + DQI+LI +D AF+R Sbjct: 6 PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIE--RDDGAAAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGSE +CGN RCV L + T T G+L A+ + VDMG P L Sbjct: 64 ILNADGSESGACGNATRCVAALLAGETGARRLTIRTNAGLLPAEIKGPTLVEVDMGAPKL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA D + ++NP SMGNPHA FFV+ DL H + + G Sbjct: 124 GWEDIPLAEPADTLSLRLAL------GPVQNPAACSMGNPHATFFVD-DLTHLQIETIGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L +F E N+ AR+ + + + LR WERG GLT ACGS ACA++V + R Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++M GG L + W D+ HV M G +EG+LD Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271 >gi|220931996|ref|YP_002508904.1| Diaminopimelate epimerase [Halothermothrix orenii H 168] gi|254767107|sp|B8CX90|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168] Length = 284 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 141/286 (49%), Gaps = 11/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN ++++ D + + A + D ++++ + D + Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFSKLARQLCRRHFSIGADGLIIVLPPESVEHDFRM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118 RI N DGSE + CGNG+RC + + R ET+ GI+ + I V Sbjct: 63 RIFNADGSEAEMCGNGIRCFAHYLRENNLTTRDVLKIETLAGIITPEIVSYNGDKSLIKV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P + IP+ + F + N N VSMGNPH I FVE D+ Sbjct: 123 NMGRPHFKSEEIPVNIEDELDYVKNFPLKIGNKKLNIN--CVSMGNPHTIIFVE-DVNQI 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++++G + +P+F + N+ ++ S + + +R WERG G+T ACG+ ACASVVA Sbjct: 180 PVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACASVVAGIK 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IEW + + VFMTG A+ + GK+ I+ G Sbjct: 240 NGLLKNMVTVHLPGGDLNIEWQEQD-VFMTGPAESVYTGKIVIQEG 284 >gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1] gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1] Length = 274 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 135/280 (48%), Gaps = 13/280 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G+GN +V+D R ++T I AL DQ + + D F Sbjct: 2 MTGFLKMHGLGNDFVVVDERTHRHDLTPARIAALCDRHTGIGCDQFVTLRPACAEGADVF 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R N DGSE +CGN RCV + R +T G+L A R G ++VDMG P Sbjct: 62 VRFFNADGSESGACGNASRCVADLVARESGRAQVGLQTRAGVLSATLVRPGVVTVDMGVP 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W +PLA + D + +P VSMGNPHA FF+ D Sbjct: 122 AQGWADVPLAEAMDTLHL----------PMAGDPAAVSMGNPHATFFLPA-PDGMDPCVA 170 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+F + N+ A VTS S+ LR WERG GLT ACGS ACA+VV + + Sbjct: 171 GPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVRRGLVD 230 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 R +V+M GG L I W D+ HV MTG A + G + Sbjct: 231 RTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGTFSPE 270 >gi|290477112|ref|YP_003470025.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004] gi|289176458|emb|CBJ83267.1| diaminopimelate epimerase [Xenorhabdus bovienii SS-2004] Length = 274 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 130/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELICRLADRRTGVGFDQLLIVEAPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIKVSTQTGRMVLSITNDDQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + VVSMGNPH + VE D+ ++ Sbjct: 121 PDFEPQHVPF-----RAIKAEKTYIIRAIERTVLCGVVSMGNPHCVIQVE-DVDTAEVEI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLENHDRFPERANIGFMQIMNRSHIRLRVFERGAGETRACGSGACAAVAVGIQQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V + GG L I W ++M G A +EG + + Sbjct: 235 NSQVRVDLPGGFLQICWDGPGKPLYMIGPATHVYEGTIHL 274 >gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243] gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91] gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576] gi|81608156|sp|Q63YH7|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243] gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576] Length = 289 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 132/288 (45%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 182 VRVDGPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002] gi|229813250|sp|B1XP39|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002] Length = 281 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 11/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G+GN +++D R + AI D ++ Q A D Sbjct: 3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQ-AGADYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ RF+ K+++ T+ G++ + D + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEPIL IP + + VSMGNPH I FVE D+ Sbjct: 122 MGEPILTATDIPTTLK--DSNGQAVNQPLEVAGKTWMVTCVSMGNPHCITFVE-DVAAIA 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP F + +N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +R +V++ GG L IEW +NH++MTG A ++G++ + Sbjct: 239 GHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281 >gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344] gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4] gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1] gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229] gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247] gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a] gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305] gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20] gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98] gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14] gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9] gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210] gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894] gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177] gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112] gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215] gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9] gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346] gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b] gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399] gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13] gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH] gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU] gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a] gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280] gi|81603782|sp|Q62EZ3|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224247|sp|A3MRQ6|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224248|sp|A2S862|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224249|sp|A1V7L3|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224250|sp|A3NQ71|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344] gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1] gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229] gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a] gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247] gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305] gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH] gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU] gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280] gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399] gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13] gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9] gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346] gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4] gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b] gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20] gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a] Length = 289 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|326563211|gb|EGE13479.1| diaminopimelate epimerase [Moraxella catarrhalis 12P80B1] Length = 299 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 142/299 (47%), Gaps = 13/299 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ +T + I L+ FDQ++++ +D Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEPPSRPDIDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC F+ +R ++ ET GI++ NR G + VDMG Sbjct: 62 YRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVETSSGIIILSTNRYGWVQVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP + + +V ++GNPHAI V+D + D+ Sbjct: 122 KPKFEPDQIPFTPKTITKVGRAYRLDVDGIPV--QLYVANIGNPHAIIKVDD-VLDADVD 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ H F E VN++ +V + + +R +ERGVG T ACG+ ACASV Sbjct: 179 RLGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGACASVATGIREGW 238 Query: 242 TNRAVSVK--MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI-----KTGKWIKKNEDD 293 + V ++ + GG L I W D + MTG +EG G + N DD Sbjct: 239 LDEGVDIRAQLYGGSLAIRWQDGYSLIMTGPTAFVYEGVFSPDGLAASAGIKLDPNADD 297 >gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383] Length = 309 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ VD Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFK 82 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 142 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P + + + R V+MGNPHA+ V+ D Y Sbjct: 143 APVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVD-DAEAYP 201 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ H F E VN +V S + LR +ER G T ACG+ ACA+V A Sbjct: 202 VLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIRR 261 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 262 GLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 309 >gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6] gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6] Length = 280 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 137/283 (48%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VDAF 63 + F KM+ GN + +D + +S D ++LI D D Sbjct: 1 MRFTKMQAAGNDYVYMDTLKAPISSPEALARRISDRHFGVGSDGLILICPPSDPGEADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SIS 117 +R+ N DGSE + CGNG+RCV + ++ ET+ G+L + + G +++ Sbjct: 61 MRMFNADGSEAEMCGNGIRCVGKYVYDNGHTDKEQVRIETLAGVLTLRLHVSGEKVETVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K IP++ + + + N VSMGNPHA+ F+ + + Sbjct: 121 VDMGEPRLAPKDIPVSGPGEDFINRPLRVQGR----VWNVTAVSMGNPHAVVFMHG-IDN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL+ G HP+F N V L +R WERG G T ACG+ ACASVVA+ Sbjct: 176 LDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGACASVVAAV 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T R V +K+LGG L IEW + NHVFMTG A + G+ Sbjct: 236 LTGNTERKVRMKLLGGELDIEWDEATNHVFMTGGAVTVFTGEW 278 >gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Lyngbya majuscula 3L] gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Lyngbya majuscula 3L] Length = 281 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + A+ + D ++ Q+ D Sbjct: 1 MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQE-GTDYT 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ +FL T T+ G+++ + DG + VDM Sbjct: 60 MRIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + D+ + L VSMGNPH I FVE D L Sbjct: 120 GMPQLSAAQIPTVLAE--ADQKVINTPIEIADKLWEVTCVSMGNPHCITFVE-DADAIPL 176 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L H +F + N +V + L +R WERG G T ACG+ ACASVVA Sbjct: 177 ETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLTQ 236 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K++R +V++ GG L IEW + + V+MTG A++ + GKL Sbjct: 237 KSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKL 276 >gi|83595884|gb|ABC25246.1| diaminopimelate epimerase [uncultured marine bacterium Ant4D3] Length = 276 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 145/281 (51%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ FAKM G+GN +V+D+ +++++ I L + FDQ++L+ Q VD Sbjct: 2 LLRFAKMHGLGNDFMVVDLISQRVHLSAEQIRCLGDRNTGVGFDQLLLVETPQSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ + ++ +T G + K +D + VDMG Sbjct: 62 YRIFNSDGTEVEHCGNGARCFARFVHDQRLTGKRDIAVQTSNGRMGLKMLKDHWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP+L L+P + R ++ VVSMGNPHA+ V+ D+ + Sbjct: 122 EPVLLPSLVPFDAPA-QAPSYRLEHNGQSYTIG----VVSMGNPHAVIVVD-DVASAPVV 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +HP F N+ ++ + ++ LR +ERGVG T ACG+ ACA+VVA Sbjct: 176 ELGTKLEQHPRFPNKANIGFMQIINRNTIKLRVFERGVGETKACGTGACAAVVAGQQQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V+ ++ GG L I+W H+ M G +EG++ + Sbjct: 236 LGTNVTAQLTGGDLTIDWQGPGHHLLMNGPTTHVYEGQIKL 276 >gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655] gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655] Length = 289 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDDADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + S E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383] Length = 289 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 89/288 (30%), Positives = 134/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ VD Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ +P + + + R V+MGNPHA+ V+ D Y Sbjct: 123 APVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVD-DAEAYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ H F E VN +V S + LR +ER G T ACG+ ACA+V A Sbjct: 182 VLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A +EG++D+ Sbjct: 242 GLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLPA 289 >gi|302381573|ref|YP_003817396.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264] gi|302192201|gb|ADK99772.1| diaminopimelate epimerase [Brevundimonas subvibrioides ATCC 15264] Length = 277 Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats. Identities = 107/281 (38%), Positives = 156/281 (55%), Gaps = 7/281 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 MQ+S F KM G GN +V++ +D + AL+ FDQ++ I A Sbjct: 1 MQAST-PFVKMNGAGNDFVVVNALETPFTPDADRVRALADRRTGEGFDQLIAIEPSDRA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DAF+R+ N DG V++CGN +RCV L S T +T+ G +A+ ++VD Sbjct: 59 -DAFMRVWNADGGVVETCGNALRCVGWMLMQANGTDSATIDTLGGPAIARRAGPERVTVD 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P LDW+ IPLA + D + IGP++ + P VSMGNPH +FF + L Sbjct: 118 MGAPRLDWREIPLAEAMDTRGIE-LQIGPIDDPVMHTPGAVSMGNPHVVFFTDR-LDDVF 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+++ HP+F +GVN+ A V + + + LR WERG GLT ACG+ ACA++VA+ Sbjct: 176 VTGAGSMIEHHPLFPQGVNVGFAHVLAPDRIRLRVWERGAGLTRACGTGACAALVAASRR 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T R+ +V + GG L I+W + HV MTG + E G+L Sbjct: 236 GLTGRSATVVVDGGELDIDWDETTGHVLMTGPVEIERTGRL 276 >gi|260219996|emb|CBA27092.1| Diaminopimelate epimerase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 302 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 136/292 (46%), Gaps = 12/292 (4%) Query: 3 SSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60 M + F KM+G GN +V+D +T L DQI+ + + Sbjct: 12 ERMRIQFTKMQGAGNDFVVLDETKGRLGLTPAHYRFLGDRHFGVGADQILTVRPSPAEGI 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D I N DG+EV+ CGNG RC RF+ + + +T++G++ DG ++V Sbjct: 72 DFEYVIHNADGNEVEQCGNGSRCFARFVRDQGLTGKDRIRVKTMKGVIEPLLTPDGRVTV 131 Query: 119 DMGEPILDWKLIPLA------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 DMG P+ + IP ++ VSMGNPHA+ V Sbjct: 132 DMGAPVFNPADIPFDDSGLSLQAMGSWGNWPLAPVESAQAAPLLVATVSMGNPHAVTLV- 190 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +A+ G + +P F++GVN+ +V S + LR +ERGVG T ACG+ ACA+ Sbjct: 191 ADVDAAPVATLGPQVQANPRFTQGVNVGFLQVVSRSQVRLRVYERGVGETLACGTGACAA 250 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKT 283 VVA L + V V+ GG L I W VFMTG A + G++++ Sbjct: 251 VVAGIRLGLLDARVDVQTRGGMLTIAWEGMGASVFMTGPATTVFRGEIELPE 302 >gi|94676850|ref|YP_588594.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|167012033|sp|Q1LTX0|DAPF_BAUCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|94220000|gb|ABF14159.1| diaminopimelate epimerase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 274 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 138/279 (49%), Gaps = 10/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D+ + ++ I L+ FDQ++ + D +D Sbjct: 1 MQFSKMHGLGNDFMVVDVVTQNVYLSPTKIRFLANRHSGVGFDQLLFVEPPYDPEIDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC+ F+ + ++ T +V + + V+MG Sbjct: 61 RIFNADGSEVTQCGNGARCLAHFVRMKKLTNKREIYISTQTSRMVLTIIENNMVRVNMGV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP ++++ N++F +VS+GNPH I V +++ ++ Sbjct: 121 PKFELPQIPF--DMHQIEKKEILYLAKNYIF---GGIVSIGNPHCIMIV-NNVDSAQVSI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H FSE N+ +V + E + LR +ERGVG T ACGS ACA+V L Sbjct: 175 IGPILEIHKYFSERTNVGFMQVINREQVLLRVYERGVGETQACGSGACAAVAIGIRLGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 V V + GG L+I W ++MTG A ++G ++ Sbjct: 235 AEQVQVALPGGKLVIYWRGPGQSLYMTGPAVHIYDGFIN 273 >gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola sp. JR] gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR] Length = 277 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN ++I+ ++ N A+ + D ++ I + A D Sbjct: 1 MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPSETA--DIQ 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----IS 117 +RI N DGSE + CGN +RC R+L K T ET+ GI + + + + + Sbjct: 59 MRIFNPDGSEPEMCGNAIRCFARYLYDHGIVKKQTIRVETLAGIRIPRIIENPAGEALVE 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L+ IP+ K+ + + + N VSMGNPH + FV+ + Sbjct: 119 VDMGEPELERGRIPMLGGPGKVVAEPLPVNGSTY----NVTCVSMGNPHCVIFVD-NAED 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y +A+ G + H F N+ +V + + +R WERG G+T ACG+ ACAS VA+ Sbjct: 174 YPVAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASAVAAH 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R V V + GG L I W +NHV+M G A ++G Sbjct: 234 LNGFTGREVIVHLDGGDLFIRWAQDNHVYMMGPAAYVFKGT 274 >gi|156972657|ref|YP_001443564.1| diaminopimelate epimerase [Vibrio harveyi ATCC BAA-1116] gi|166225762|sp|A7N0W0|DAPF_VIBHB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|156524251|gb|ABU69337.1| hypothetical protein VIBHAR_00309 [Vibrio harveyi ATCC BAA-1116] Length = 276 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNRYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274 >gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M] gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2] gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2] gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M] Length = 289 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 141/288 (48%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T+ + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLF-LRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P A D R + P+ R VSMGNPHA+ V+ D Y Sbjct: 123 APVFAPEQVPFDASGLDGRTEGRDTLWPLEIGGRTRWISTVSMGNPHAVQVVD-DAEAYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLDEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W ++ + M G A +EG++D+ Sbjct: 242 GLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDLPA 289 >gi|261400446|ref|ZP_05986571.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970] gi|269209897|gb|EEZ76352.1| diaminopimelate epimerase [Neisseria lactamica ATCC 23970] Length = 283 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 142/284 (50%), Gaps = 9/284 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 M++ + F KM G+GN +VID I + FDQ++++ + Sbjct: 1 MKT--LKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAEWADRFRGVGFDQLLVVGRSETEG 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 VD RI N DGSEV+ CGNG RC RF+T + +K ET +G++ K + +G ++ Sbjct: 59 VDFRYRIFNADGSEVEQCGNGARCFARFVTDKGLTDKKEICVETAKGVIFPKLSDNGMVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P IP + D D G ++ V+MGNPHA+ V+ D+ Sbjct: 119 VNMGKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVEC 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G L+ H F E VN+ +V + LR +ERGVG T ACG+ ACA+V A Sbjct: 177 APVRETGPLIEAHRQFPERVNVGFMQVVGRTEIRLRVFERGVGETQACGTGACAAVAAGI 236 Query: 238 CLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + + + GG L IEW V MTG A+ +EG+L Sbjct: 237 RLGLLDEGKTIEAVLPGGTLYIEWVRGGDVMMTGPAETVFEGEL 280 >gi|330818644|ref|YP_004362349.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3] gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3] Length = 288 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 86/286 (30%), Positives = 136/286 (47%), Gaps = 10/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T + + AL+ DQ++L+ VD Sbjct: 3 LPFTKMQGAGNDFVVLDGTAGDLGLTPERVRALADRHFGIGADQLLLVERPSLDGVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ + T + G++ +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDKGLTDKTTVRVQVKHGVITLSMQDNGEVVVDMGS 122 Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P + + D + R VVSMGNPHA+ V+ D + + Sbjct: 123 PVFEPARVPFDVAGLAGRRDGADTVYPLEVNGATRWISVVSMGNPHAVQLVD-DAEAFAV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 LEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAVAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 + V+V+ GG L I W ++M G A ++G +++ Sbjct: 242 LLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIELA 287 >gi|149186852|ref|ZP_01865162.1| diaminopimelate epimerase [Erythrobacter sp. SD-21] gi|148829519|gb|EDL47960.1| diaminopimelate epimerase [Erythrobacter sp. SD-21] Length = 273 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 101/283 (35%), Positives = 138/283 (48%), Gaps = 18/283 (6%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQD 57 M+ +M V F KM G+GN +V+D R + A++ DQ++L+ Sbjct: 1 MRGTMRVPFIKMHGLGNDFVVLDARETALPVLDKGRAAAIADRHEGIGCDQLILLEPS-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 S D +RI N DGSEV +CGN R V + + G L++ DG Sbjct: 59 GSADFRMRIFNHDGSEVGACGNATRAVALLHGVEARIE------TAGGLLSASPSDGGAR 112 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P DW IPLA D + PV L NP V++GNPH IFFVE D Sbjct: 113 VDMGTPRFDWDAIPLAYPMDTL------SMPVGWEMLENPGAVNVGNPHVIFFVE-DTNA 165 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G + K P+F E VN+++A + S + LR WERG GLT ACG+ ACA+ V + Sbjct: 166 VPLDRIGPEIEKDPLFPERVNVNVATIESRSRIRLRVWERGAGLTRACGTGACATAVRAM 225 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V+V + GG L I W + MTG A + + G + Sbjct: 226 RRKLVDSPVTVALPGGELEIAWEPGGTIQMTGPATEAFRGSFE 268 >gi|209693749|ref|YP_002261677.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238] gi|229807485|sp|B6EP85|DAPF_ALISL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|208007700|emb|CAQ77811.1| diaminopimelate epimerase [Aliivibrio salmonicida LFI1238] Length = 276 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 95/279 (34%), Positives = 133/279 (47%), Gaps = 10/279 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNIFFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DG+EV+ CGNG RC RF+ + T T +G + K D I+V+MGEP Sbjct: 64 IFNSDGTEVEQCGNGARCFARFVRMKGLTNRTTILVSTKKGKMSLKVEDDDQITVNMGEP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ ++ L VSMGNPH V DD+ +YD+ + Sbjct: 124 QFEPNKIPFKA----TQAEKTYLLRAEDKTLFCG-AVSMGNPHC-VTVVDDVDNYDVDKY 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ H F E VN + S + LR +ERG G T ACGS ACA+V Sbjct: 178 GPLVEGHERFPERVNAGFMEIVSPSEIKLRVYERGAGETQACGSGACAAVAVGIMQELLE 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W +FMTG A ++G+L I Sbjct: 238 EDVKVSLPGGDLRIVWQGPGKPLFMTGPATHVYDGQLSI 276 >gi|326404965|ref|YP_004285047.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301] gi|325051827|dbj|BAJ82165.1| diaminopimelate epimerase [Acidiphilium multivorum AIU301] Length = 277 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 102/275 (37%), Positives = 137/275 (49%), Gaps = 10/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +V+D R ++ A + DQI+LI D AF+R Sbjct: 6 PFLKMHGAGNDFVVLDARAHPLDLAPAAAARIADRHRGVGCDQIILIEP--DDGAAAFMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGSE +CGN RCV L + T G+L A+ + VDMG P L Sbjct: 64 ILNADGSESGACGNATRCVAALLAGETGARRLAIRTNAGLLPAEIKGPTLVEVDMGAPKL 123 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA D + ++NP SMGNPHA FFV+ DL H + + G Sbjct: 124 GWEDIPLAEPADTLSLRLAL------GPVQNPAACSMGNPHATFFVD-DLTHLQIETIGP 176 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L +F E N+ AR+ + + + LR WERG GLT ACGS ACA++V + R Sbjct: 177 KLEHARLFPERANIGFARIDAPDRIRLRVWERGAGLTLACGSGACAALVNAHRRGLAARR 236 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 ++M GG L + W D+ HV M G +EG+LD Sbjct: 237 AEIEMDGGTLTLTWRDDGHVLMEGPVALVFEGELD 271 >gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans] Length = 276 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 7/277 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID + T L+ DQ++++ Q A VD RI N Sbjct: 1 MHGAGNDFVVIDAINQSIHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R V+F+T + +++ ET+ G++ + +G I+VDMG PIL Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILTP 120 Query: 128 KLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + +P S + V+SMGNPHA+ V D H + G Sbjct: 121 EDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVV-ADADHAPVREDGV 179 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP F + VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 LIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRRGLLASP 239 Query: 246 VSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+ GG L I W +N V +TG A +EG++++ Sbjct: 240 IKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276 >gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 286 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 144/284 (50%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F KMEGIGN + ID ++ + I LS D ++ I + + Sbjct: 9 INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--FQM 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRDGSIS 117 + N DGS + CGNG+RCV +F+ K + T ET +G+L + ++ Sbjct: 67 DMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVT 126 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL L+P+ D+ ++ + VSMGNPH + +V+ D Sbjct: 127 VDMGEPILKPSLVPIVWKGDEPVINQVIE---VQGKQYHFTAVSMGNPHCVIYVD-DADD 182 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP F VN+ + + L RTWERG G T ACG+ ACA VAS Sbjct: 183 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 242 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R+V + + GG L IEW +N VFMTG AK+ + G+++I Sbjct: 243 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 286 >gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601] gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601] Length = 292 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 134/289 (46%), Gaps = 12/289 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG +VQ CGNG RC R++ + + +T+ G++ + DG ++VDMG Sbjct: 63 LIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDMGR 122 Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P+LD +P + + + VSMGNPHA+ V+ D+ Sbjct: 123 PVLDPARLPFDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQLVD-DVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F + VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 SAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIKT 283 L + V V GG L I W + VFMTG A +EG++DI Sbjct: 242 IGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIPE 290 >gi|153835736|ref|ZP_01988403.1| diaminopimelate epimerase [Vibrio harveyi HY01] gi|148867605|gb|EDL66907.1| diaminopimelate epimerase [Vibrio harveyi HY01] Length = 276 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274 >gi|89902213|ref|YP_524684.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118] gi|122478434|sp|Q21SV0|DAPF_RHOFD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|89346950|gb|ABD71153.1| diaminopimelate epimerase [Rhodoferax ferrireducens T118] Length = 291 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 134/287 (46%), Gaps = 11/287 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L+ DQI+ + +D Sbjct: 3 IPFTKMQGAGNDFVVLDETQGRFGLSTAHYRLLADRHFGVGADQILTVRPSPAPGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG+EV+ CGNG RC RF+ + + + +T G++ + N DG ++V+MG Sbjct: 63 LIHNADGAEVEQCGNGARCFARFVRDQGLTAKDAIRVQTRGGVIEPQLNPDGRVTVNMGA 122 Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P+ + IP + + + H VVSMGNPHA+ V+ D+ Sbjct: 123 PVFELAEIPFDATGLQPQTSGLWKKWPLALVDSGHATTVYVAVVSMGNPHAVQVVD-DVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G L+ H F + VN ++ + LR +ERG G T ACGS ACA+VVA Sbjct: 182 TAPVRLQGPLIEHHASFPKRVNAGFMQIVDRSHIRLRVYERGTGETLACGSGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 L + V V+ GG L I W V MTG A + G++++ Sbjct: 242 IRLGLLDDTVHVQTHGGTLTISWAGAAAPVLMTGPATPVFHGEINLP 288 >gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis] Length = 303 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 138/287 (48%), Gaps = 13/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V FAK +G+GN +++D R + + A+ + D ++ ++ D Sbjct: 19 VKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFGIGGDGVIFALPSEN-GTDYS 77 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ RF+ + + T+ G++ DG + VDM Sbjct: 78 MRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHTLAGLIQPALLPDGQVCVDM 137 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----L 175 GEPIL +P + + V+ VSMGNPHAI F D + Sbjct: 138 GEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKE-WLMTCVSMGNPHAITFGLADGSSIKV 196 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL G +P+F N V S + + WERG G T ACG+ ACA+VVA Sbjct: 197 DSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWERGAGATLACGTGACATVVA 256 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ V + GG L IEW + +NH++MTG A+ + G +D+ Sbjct: 257 GVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFAGSVDV 303 >gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501] gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501] Length = 279 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 148/282 (52%), Gaps = 13/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN ++++ + A D ++LI + D + Sbjct: 1 MEFTKMHGLGNDFVMVNGFNEDIADPNQLAEAICDRHFGVGADGLVLILPSKQEEADFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL----VAKENRDGSISV 118 RI N DGSE + CGN +RC ++L R ++ ET+ GI+ + ++++ ++ V Sbjct: 61 RIFNPDGSEPEMCGNAIRCFGKYLYDRDLTEKTKIRVETLAGIIVPELIIEKDQVEAVQV 120 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P L IP+ + DK+ +++ + + VSMGNPH + FV+ D Sbjct: 121 DMGQPGLGSTDIPITGVNKDKVIKEKLEVENEEYEI----TAVSMGNPHTVIFVD-DADD 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G + +HP F E N+ V + + +R WERG G+T ACG+ AC S VAS Sbjct: 176 FPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACGSTVASI 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 TN+ V V +LGG L IEW +++HV+MTG A++ + G+ Sbjct: 236 LNDYTNQKVEVHLLGGDLTIEWTEDSHVYMTGPAEEVFVGEW 277 >gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7] gi|254767113|sp|A6VFK8|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7] Length = 277 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI + A D + Sbjct: 1 MKFTKMHGLGNDYIYVDATSQKIENPNEISRFVSDRHFGIGSDGLVLILPSEIA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGN +RCV +F+ + T ET+ GI V + + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENDKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + N VSMGNPHAI ++E ++ + Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKDY----CYNFTCVSMGNPHAITYIE-NVSEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F N+ + ++ +R WERG G T ACG+ ACA +VAS Sbjct: 174 PLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ +NH++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277 >gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646] gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646] Length = 283 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 141/286 (49%), Gaps = 13/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V++ I + D I+L+ D + Sbjct: 4 MKFTKMHGLGNDFIVVNGFKEDVRIIFKKAEKICDRHVGIGADGILLVLPSDK--CDLKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRG----ILVAKENRDGSISV 118 RIIN DGSE CGNG+RC R+ SR + S T ET+ G ++ K++R S+ V Sbjct: 62 RIINSDGSEADMCGNGIRCFARYAFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVRV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG L K IP+A + + + + + VSMGNPH + FV+ D+ + Sbjct: 122 DMGCYSLQKKDIPVAGN---PNEEAVDLEISVDDRVFKFTGVSMGNPHCVIFVD-DVESF 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + FG ++ +HP+F + N+ + L +R WERG GLT ACG+ ACAS VA+ Sbjct: 178 PVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASAVAAYK 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 V+V + GG L IE N V+MTG A + + G +D+ Sbjct: 238 KGIVGPKVTVSLPGGDLFIEIEKNGRVYMTGPAVEVFSGYIDLSAL 283 >gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226724214|sp|B0SC36|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 280 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 97/284 (34%), Positives = 144/284 (50%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F KMEGIGN + ID ++ + I LS D ++ I + + Sbjct: 3 INFTKMEGIGNDYVYIDATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSNSGE--FQM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA-----KENRDGSIS 117 + N DGS + CGNG+RCV +F+ K + T ET +G+L + ++ Sbjct: 61 DMYNSDGSSSEMCGNGVRCVGKFVYDHGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMVT 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL L+P+ D+ ++ + VSMGNPH + +V+ D Sbjct: 121 VDMGEPILKPSLVPIVWKGDEPVINQVIE---VQGKQYHFTAVSMGNPHCVIYVD-DADD 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP F VN+ + + L RTWERG G T ACG+ ACA VAS Sbjct: 177 FPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAVTVASI 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R+V + + GG L IEW +N VFMTG AK+ + G+++I Sbjct: 237 LNGKTGRSVRIDLRGGTLHIEWQENGSVFMTGPAKEVFSGEVEI 280 >gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC] gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC] Length = 292 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 134/289 (46%), Gaps = 12/289 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG +VQ CGNG RC R++ + + +T+ G++ + DG ++VDMG Sbjct: 63 LIHNADGGQVQQCGNGARCFARYVRDKGLTAKDRIRVQTMAGVIAPELTADGRVTVDMGR 122 Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P+LD +P + + + VSMGNPHA+ V+ D+ Sbjct: 123 PVLDPARLPFDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQLVD-DVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F + VN +V + LR +ERG G T ACG+ ACA+VVA Sbjct: 182 SAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGTGACAAVVAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIKT 283 L + V V GG L I W + VFMTG A +EG++DI Sbjct: 242 IGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQIDIPE 290 >gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505] gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505] Length = 279 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 138/281 (49%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R IT + AI D ++ Q D Sbjct: 3 IEFTKYHGLGNDFILIDNRCDLTPLITPEMAIRMCDRHFGIGADGVIFALPGQK-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ FLT + + T+ G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSKDYYLIHTLAGVIRPQLTDDGQVRVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L + IP + + N + VSMGNPH I FVE D+ Sbjct: 122 MGSPRLLAQEIPTTLAPGNSKIINLPLEIGN--QTWHITCVSMGNPHCITFVE-DVASIP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G HP+F + N +V + L +R WERG G+T ACG+ ACAS+VA Sbjct: 179 LEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLVAGVLN 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + +R +++ GG L IEW + + ++MTG A++ + GK+ Sbjct: 239 NLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279 >gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328] gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328] Length = 287 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 139/281 (49%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I A+ D ++ D + D Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPG-DGASDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+T + + T G++ + DG + VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP S + + + + + VSMGNPH I FV+ D+ Sbjct: 122 MGLPRLLAAEIPTTLSEN--NLKVIDVPLEVAGQVLSVTCVSMGNPHCITFVD-DVASVP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP F E N V + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 LTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + +R V+V++ GG L IEW + ++MTG A+ ++G+L Sbjct: 239 QRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279 >gi|269961536|ref|ZP_06175899.1| diaminopimelate epimerase [Vibrio harveyi 1DA3] gi|269833765|gb|EEZ87861.1| diaminopimelate epimerase [Vibrio harveyi 1DA3] Length = 276 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRNHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMTGPATHVFDGQL 274 >gi|260767553|ref|ZP_05876489.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972] gi|260617453|gb|EEX42636.1| diaminopimelate epimerase [Vibrio furnissii CIP 102972] gi|315178746|gb|ADT85660.1| diaminopimelate epimerase [Vibrio furnissii NCTC 11218] Length = 276 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I ++ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSPELIRRMADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V D I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLIVEDDDQITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I V L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPSKIPF----RAKQAEKTYIMRVEEQTLFCG-AVSMGNPHV-VTVVDDVTTANVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V+V + GG L I W ++MTG A ++G+L Sbjct: 238 DTVTVHLPGGDLEISWQGPGKPLYMTGPATHVFDGQL 274 >gi|260431874|ref|ZP_05785845.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157] gi|260415702|gb|EEX08961.1| diaminopimelate epimerase [Silicibacter lacuscaerulensis ITI-1157] Length = 277 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 139/281 (49%), Gaps = 16/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +++D R IT + FDQ+ +I + + DA + Sbjct: 9 LPFMKMHGLGNDFVIVDARAHPVQITPALARGIGHRQFGVGFDQLAVIVNGES---DAHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T T G L A++ DG SV+MG P Sbjct: 66 VFYNADGSISATCGNATRCIARFLMQESGKSELTLSTSHGTLQARDAGDGLTSVNMGHPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA D ++ P MGNPH FFVE D L FG Sbjct: 126 LDWADIPLAEEVDTLEL----------PIEGGPVATGMGNPHCTFFVE-DAEAIPLEEFG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A++ + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 ARYEHHPLYPQRTNVQVAQIIGPDHIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 V +++ GG + I+W ++ V+MTG + G L + + Sbjct: 235 KVQIELDGGTIWIDWREDG-VWMTGPTCHVFSGTLTPEFLE 274 >gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776] gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776] Length = 280 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 128/283 (45%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F KM GIGN + +++ + D +S D ++LI + DA Sbjct: 1 MRFTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSI 116 +++ N DGSE + CGNG+RCV +++ K G V + Sbjct: 59 MQMFNADGSESEMCGNGVRCVAKYVYDHGIAKKPELRIETGRGVLTLQMFAGSSGKAERV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG PIL IP A D +G + VSMGNPH + FV+ +L Sbjct: 119 RVNMGTPILKSADIPTALPGDPPVNQPLVVGDK----TISVTCVSMGNPHCVTFVD-ELT 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G + H F VN A+V S + LR WERG G T ACG+ ACA++VA Sbjct: 174 DAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGACATLVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +T+ + + GG L IEW D VFMTG A + + G+ Sbjct: 234 VLSGRTDHQALIHLPGGDLEIEWPDEKEVFMTGPATEVFTGEW 276 >gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6] gi|254767112|sp|A9AB27|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6] Length = 277 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 141/284 (49%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI A D + Sbjct: 1 MKFTKMHGLGNDYIYVDAISQKIENPNEISRFVSDRHFGIGSDGLVLILPSDLA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGN +RCV +F+ + T ET+ GI V + + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENDKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + N VS+GNPHAI ++E ++ + Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKDY----CYNFTCVSIGNPHAITYIE-NVEEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F N+ + ++ +R WERG G T ACG+ ACA +VAS Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ +NH++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEIDI 277 >gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666] gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666] Length = 299 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 17/300 (5%) Query: 1 MQSS-----MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHD 54 M+S+ ++ F KM+G GN +++D N+++ L+ DQI+ + Sbjct: 1 MRSADNGAMLIRFTKMQGAGNDFVMLDETRGRLNLSTAQYRFLADRHFGVGADQILSVRP 60 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR 112 +D I N DG EV+ CGNG RC VRF+ + + + +T+ G++ + Sbjct: 61 SPGEGIDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTSKDAVRVKTLSGVIEPRMQA 120 Query: 113 DGSISVDMGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 DG ++VDMG P+ + IP A+ ++ + + V+SMGNPH Sbjct: 121 DGRVTVDMGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPH 180 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 A+ V+ D+ + G L+ H F + VN +V S + LR +ERG G T ACG Sbjct: 181 AVQLVD-DVDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACG 239 Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKTG 284 + ACA+VVA + V V+ GG L IEW + V MTG A +E ++++ Sbjct: 240 TGACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVFESEIEVPEL 299 >gi|311109401|ref|YP_003982254.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8] gi|310764090|gb|ADP19539.1| diaminopimelate epimerase [Achromobacter xylosoxidans A8] Length = 303 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 89/290 (30%), Positives = 131/290 (45%), Gaps = 12/290 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D ++T + AL DQI+L+ D R Sbjct: 10 NFTKMHGAGNDFVVLDGVRQTIDMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R E GILV + D ++VDMG Sbjct: 70 IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDQGDDEQVTVDMGST 129 Query: 124 ILDWKLIPLARSF-------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + +P + + P V++ NPHA+ V+ D+ Sbjct: 130 RFEPSALPFDTAGLASRVQGQDTLWELELDAPAGLPRTVALSAVAISNPHAVQVVD-DVD 188 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F VN ++ ++ LR +ERG G T ACG+ ACA+V A Sbjct: 189 TAPVAILGPLIETHPRFPRRVNAGFMQIVDRNNIRLRVFERGAGETLACGTGACAAVAAG 248 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + V V+ GG L + W+ + MTG A+ + G++DI + Sbjct: 249 IRRGLLDSPVRVQARGGVLTVAWNGEQ-LRMTGPAESVFTGQVDIDKLVF 297 >gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4] Length = 289 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 130/288 (45%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ E G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVD-DAEAFP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + + P F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V V GG L I W + + M G A +EG +D+ Sbjct: 242 GQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA 289 >gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2] gi|122959296|sp|Q0VM18|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2] Length = 281 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 131/285 (45%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 + F KM G+GN +VID + +D I L+ FDQ++++ Q Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQ-GD 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D RI+N DGSEV CGNG RC RF+ + +KS ET G + D I+ Sbjct: 62 ADFRYRILNADGSEVSQCGNGARCFARFVREQGLTDKKSIRVETAAGQMTLSVTDDDQIT 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P IP+ + + + + V +GNPH VE ++ Sbjct: 122 VDMGAPRWAPDAIPMTAKAEADNYFLV-----SGTQAWDVGAVGLGNPHCTLLVE-NVDT 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G LL H F E N+ ++ S + LR +ERG G T ACGS ACA+VV Sbjct: 176 APVDTVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAVVIGQ 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V+V + GG L + + + MTG A ++G ++I Sbjct: 236 RRDWLDDTVTVHLPGGTLHVCYDGQGGIQMTGPASHVYDGAIEIA 280 >gi|159045768|ref|YP_001534562.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12] gi|157913528|gb|ABV94961.1| diaminopimelate epimerase [Dinoroseobacter shibae DFL 12] Length = 282 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 139/278 (50%), Gaps = 15/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R ++ + AL+ FDQ+ +I DA + Sbjct: 12 LPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPA--PEADAHL 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R + + T RG+L+A++ DG V+MG+P Sbjct: 70 TFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W +PLA + D ++ P MGNPH FFV D L +FG Sbjct: 130 TLWSEVPLAEAMDTLEL----------PIEGTPTATGMGNPHCTFFV-ADAEAIPLDTFG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A++ + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 179 PRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGR 238 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + + GG L I+W ++ V+MTG +EG+L + Sbjct: 239 KTRIDLDGGTLWIDWREDG-VWMTGPNMTVFEGRLTPQ 275 >gi|71064780|ref|YP_263507.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4] gi|123649755|sp|Q4FV85|DAPF_PSYA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71037765|gb|AAZ18073.1| diaminopimelate epimerase [Psychrobacter arcticus 273-4] Length = 295 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ ++T D + L FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ +R ++ ET GI+ + G + VDMG Sbjct: 62 YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDHYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP ++ +H+ +V +MGNPHA+ V+ D+ D+ Sbjct: 122 KPKFEPSEIPFTPRATTKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKVD-DVLDADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G + HP F E VN+ +V + + LR +ERGVG T ACG+ ACA+V Sbjct: 179 SLGRAIESHPAFPERVNVGFMQVMNQRHIRLRVYERGVGETQACGTGACAAVAIGIREGW 238 Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V ++ GG ++I+W V MTG +EG Sbjct: 239 LDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVF 278 >gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2] gi|74554659|sp|Q6LYS1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2] Length = 277 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 93/284 (32%), Positives = 139/284 (48%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI A D + Sbjct: 1 MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGN +RCV +F+ + T ET+ GI V + + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + N VSMGNPHAI ++E ++ + Sbjct: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKDY----CYNFTCVSMGNPHAITYIE-NVDEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F N+ + ++ +R WERG G T ACG+ ACA + AS Sbjct: 174 PLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L IEW++ + H++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277 >gi|260574289|ref|ZP_05842294.1| diaminopimelate epimerase [Rhodobacter sp. SW2] gi|259023755|gb|EEW27046.1| diaminopimelate epimerase [Rhodobacter sp. SW2] Length = 279 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 100/272 (36%), Positives = 135/272 (49%), Gaps = 15/272 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID RG T AL FDQ+ I D A D + Sbjct: 10 LAFMKMHGLGNDFVVIDSRGRGAVTTPALARALGDRHRGVGFDQLAEIRDS--AEADFAL 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV F+ + + T T RG L A DG +SV+MG P Sbjct: 68 DFWNSDGSRAGACGNATRCVAEFVMRGSGKAAVTLTTTRGHLQAVRRADGLVSVNMGAPQ 127 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLAR D + +P V MGNPH +FFV + ++A G Sbjct: 128 LDWAEVPLARPADTLHL----------PISGDPVAVGMGNPHCVFFVG-NAETVNVADLG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L P+F + N+ A +T + L +R WERG G+T ACGS ACA+ VA+ T R Sbjct: 177 ALFETDPLFPQKTNVEFATLTGPDRLRMRVWERGAGITLACGSGACATAVAAHRRGLTGR 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V++ + GG L I+W + V+MTG ++ Sbjct: 237 KVTLDLDGGALEIDWRSDG-VWMTGPTAHVFD 267 >gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e] gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e] Length = 289 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 132/288 (45%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++L+ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+ + S E ++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRDHGLTGKASVRVEVKHSVITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S R+ + R VVSMGNPHA+ V+ D + Sbjct: 123 APVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVD-DAEAFA 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + + P F + VN ++ S ++LR +ERG G T ACG+ ACA+V A Sbjct: 182 VRVDGPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + + V+V GG L I W + + M G A +EG +++ Sbjct: 242 GRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIELPA 289 >gi|296532249|ref|ZP_06894993.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957] gi|296267419|gb|EFH13300.1| diaminopimelate epimerase [Roseomonas cervicalis ATCC 49957] Length = 276 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 103/281 (36%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D R ++ I ALS DQ + + + A D F Sbjct: 1 MIPFRKMHGLGNDFIVVDARPAPLPLSPTRIAALSDRHRGIGCDQFITLERPE-AGADVF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSE ++CGN RCV L + R T+RG L + G+I DMG P Sbjct: 60 MRIHNPDGSEAEACGNATRCVAWLLMAETGRDHVVVRTVRGDLPCERLAGGTIRADMGPP 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L W+ +PLA + D P++ + +P SMGNPHA FFVE L D + Sbjct: 120 SLAWQEVPLAEAMDTT------HLPIDLGAVADPAACSMGNPHATFFVET-LEGLDWQAL 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+ + N+ A V S E + L WERG G T ACGS ACA++V + Sbjct: 173 GPLAEHHPLLPQRANIGFAEVVSPEHIRLAIWERGAGPTLACGSGACATLVNAHRRGLAG 232 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 R + + GG L +EW +NHV M G + G+ D T Sbjct: 233 RRARIDLPGGPLELEWRLSDNHVLMGGPVATAFLGQFDPDT 273 >gi|37678271|ref|NP_932880.1| diaminopimelate epimerase [Vibrio vulnificus YJ016] gi|161501834|ref|NP_760075.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6] gi|320154949|ref|YP_004187328.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O] gi|29839314|sp|Q8DD81|DAPF_VIBVU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56748740|sp|Q7MQC1|DAPF_VIBVY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|37197010|dbj|BAC92851.1| diaminopimelate epimerase [Vibrio vulnificus YJ016] gi|319930261|gb|ADV85125.1| diaminopimelate epimerase [Vibrio vulnificus MO6-24/O] gi|319999166|gb|AAO09602.2| diaminopimelate epimerase [Vibrio vulnificus CMCP6] Length = 276 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 91/277 (32%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + + I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVYFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ D I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMILDVEEDDQITVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I V L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPF----RAKQKEKTYIMRVGEKTLFCG-AVSMGNPHV-VTVVDDVDSAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREQIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V+V + GG L I W ++MTG A ++G+L Sbjct: 238 ENVTVSLPGGDLHIHWQGPGKPLYMTGPATHVFDGQL 274 >gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4] gi|166224252|sp|A4JIQ6|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4] Length = 289 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 11/286 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++++ D Sbjct: 3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F+T R ++S + ++G++ +G + VDMG Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVTDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 122 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + +P S + D + R VSMGNPHA+ V+ D Y Sbjct: 123 APVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQVVD-DAEAYP 181 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A Sbjct: 182 VLAEGPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 241 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I W + + M G A +EG++++ Sbjct: 242 GLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIEL 287 >gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC 29176] gi|197297320|gb|EDY31882.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC 29176] Length = 281 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 145/288 (50%), Gaps = 16/288 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M+ M F KM+G+GN + ++ + ++ A+ D ++LI+ + A Sbjct: 1 MEKKM-KFTKMQGLGNDYVYVNCFKEKIEDPSALAVRISDRHFGVGSDGLILINPSKVA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRD 113 D + + N DGS + CGNG+RCV +++ +++ + ET+ GI + + Sbjct: 59 -DCEMEMYNADGSRGEMCGNGIRCVGKYMYDYGLTDKEAISVETLAGIKYLQFFIENGKV 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + VDMG PIL IP+ ++ + + + +SMGNPHAI +V+ Sbjct: 118 AKVKVDMGSPILTPAEIPVVAEGERAVDEPIVVDGTEYRM----TCISMGNPHAIVYVD- 172 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + + G L KH F VN +V ++++R WERG G T ACG+ ACA+ Sbjct: 173 DVKNLPIEKIGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGACATA 232 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 VA T V+VK+LGG L IEW + N VFMTG AK ++G + Sbjct: 233 VACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDGVWE 280 >gi|84514984|ref|ZP_01002347.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53] gi|84511143|gb|EAQ07597.1| diaminopimelate epimerase [Loktanella vestfoldensis SKA53] Length = 281 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 15/280 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 + + F KM G+GN +V+D RG +T+ + A++ FDQ+ +I D Sbjct: 16 QTFLPFRKMHGLGNDFVVVDERGTTPRVTAALVQAIADRHRGVGFDQLAVI--SDTPDAD 73 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS +CGN RC+ R + + +++ T T RG L A + G SV+MG Sbjct: 74 LHLTFWNSDGSTAATCGNATRCIARLVMDQTGQRNLTITTDRGTLQAVDTGGGLTSVNMG 133 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P LDW IPLA D + +P MGNPH FFV+ D DLA Sbjct: 134 QPQLDWHEIPLAEQIDTLQL----------PIDGSPTATGMGNPHCTFFVD-DAEAVDLA 182 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ HP+F + N+ A + + L +R WERGVG+T A GS++CA+ VA+ Sbjct: 183 MRGALIEHHPLFPQRTNVQFASLIGPDHLRMRVWERGVGVTLASGSSSCATAVAAARRGL 242 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V++ + GG L I+W D+ ++MTG ++G+ + Sbjct: 243 TGRKVTITLDGGDLAIDWRDDG-IWMTGATAYVFDGQWRL 281 >gi|323500160|ref|ZP_08105105.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326] gi|323314789|gb|EGA67855.1| diaminopimelate epimerase [Vibrio sinaloensis DSM 21326] Length = 276 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V D ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIPFKAK----QTEKTYILRADEKTLFCG-AVSMGNPHV-VTVVDDVNTTDVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVLSPKEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG A ++G+L Sbjct: 238 ENVVVHLPGGDLKIRWQGPGKPLFMTGPATHVFDGQL 274 >gi|323495293|ref|ZP_08100374.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546] gi|323310470|gb|EGA63653.1| diaminopimelate epimerase [Vibrio brasiliensis LMG 20546] Length = 276 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V D ++V+MGEP Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGEP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPGKIPFKAK----QTEKTYILRADDKTLFCG-AVSMGNPHV-VTVVDDVTTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + ++LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVRRDEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W ++MTG A ++G+L Sbjct: 238 EKVKVNLPGGSLQISWQGPGKPLYMTGPATHVFDGQL 274 >gi|269964930|ref|ZP_06179100.1| diaminopimelate epimerase [Vibrio alginolyticus 40B] gi|269830406|gb|EEZ84630.1| diaminopimelate epimerase [Vibrio alginolyticus 40B] Length = 276 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP + ++ N LF VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPFKAK--QKEKTYIMRAGDNTLFCG---AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG ++G+L Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274 >gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14] Length = 276 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 136/283 (48%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ ++ ++ AI D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFEEKVEDPSALAIQVSDRHFGIGSDGLILICPSEVA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILV----AKENRDGSISV 118 + N DGS + CGNG+RCV +++ + T ET+ GI + + + V Sbjct: 59 AMYNADGSRGEMCGNGVRCVGKYMYDYGLTDKTEITVETLAGIKTLQLFVENGKVAKVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL IP+ DK + + + VSMGNPHA+ +V+ D+ + Sbjct: 119 DMGSPILTPAEIPVVAEGDKAVDEPILVDGKEYHM----TCVSMGNPHAVVYVD-DVNNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G H F VN +V ++ +R WERG T ACG+ ACA V+ Sbjct: 174 PIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACAVAVSCIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG L I+W + N V+MTG A ++G+L Sbjct: 234 NGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGELK 276 >gi|294142608|ref|YP_003558586.1| diaminopimelate epimerase [Shewanella violacea DSS12] gi|293329077|dbj|BAJ03808.1| diaminopimelate epimerase [Shewanella violacea DSS12] Length = 280 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 5/279 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLANRHFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ ++ T G L + RDG+++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIKVSTSNGKLTLRLERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PIL+ IP + + + VS+GNPH + VE D+ D+ Sbjct: 121 IPILEPSKIPFNAKRAEKTYLLQTDTAESKMQTFLCGAVSLGNPHCVLDVE-DVQATDVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F +GVN+ +V + + LR +ERG T ACG+ ACA+ V K Sbjct: 180 GIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A+ ++G++ Sbjct: 240 LDNRVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQI 278 >gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143] gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143] Length = 276 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM+G+GN +V+D+ N+ ++ + L+ DQ++++ VD Sbjct: 2 LLRFTKMQGLGNDFVVLDLVTQRFNLQAEHVRKLADRHFGIGCDQLLVVETPMQPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC +F+ + + ET GI+ D I V+MG Sbjct: 62 YRIYNGDGNEVEQCGNGARCFAKFVRDKKLTGKNKIRVETNSGIIELSVMEDRQIRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P+L+ IP S + VS+GNPHAI VE D+ ++ Sbjct: 122 KPLLEPADIPFTASKRANTYTLLVDD-----EEVSISAVSVGNPHAIITVE-DIDTAPVS 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F + VN+ +V S + ++LR +ERG G T ACGS ACA++V+ Sbjct: 176 ILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAAMVSGQLQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ ++ + GG L +EWH H V MTG A +EG++ + Sbjct: 236 LDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276 >gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506] gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506] Length = 278 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K G+GN ++ID R + I + D ++ Q+ D Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQN-GTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISVDM 120 +RI N DGSE + CGNG+RC+ +F+ + T +T+ G++ + DG + VDM Sbjct: 62 MRIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + DR + VSMGNPH I FVE D+ L Sbjct: 122 GIPRLLAAEIPTT--LESPDRKVVELPLEVAGQSWLVTCVSMGNPHCITFVE-DVSAIAL 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L H +F + N ++ + + +R WERG G+T ACG+ ACASVVA Sbjct: 179 ETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAGVLAG 238 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 K +R +V++ GG L IEW + ++MTG A + + GK+ Sbjct: 239 KCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278 >gi|294788152|ref|ZP_06753395.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453] gi|294483583|gb|EFG31267.1| diaminopimelate epimerase [Simonsiella muelleri ATCC 29453] Length = 282 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 92/279 (32%), Positives = 138/279 (49%), Gaps = 7/279 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + + I FDQ++++ Q VD Sbjct: 4 LKFSKMHGLGNDFMVIDATRQTFDTANAPIREWADRHTGVGFDQLLIVESSQTEGVDFGY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC V+F+T + ++ +T +GI+ + N DG ++V+MG+ Sbjct: 64 RIFNADGSEVEQCGNGARCFVKFVTEQGLTDKQEIVVQTAKGIIKPRLNDDGLVTVNMGQ 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P V L +V+MGNPHA+ +V ++ + S Sbjct: 124 PRFAPEDVPFVL-RSGEQVGAVSYIVVKDLDSAEMSLVNMGNPHAVMWVG-NVDDAPVES 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G L H F + VN+ +V + LR +ERG G T ACG+ ACA+VVA L Sbjct: 182 WGAALQNHQRFPQKVNVGFMQVVDKNHIKLRVYERGAGETQACGTGACAAVVAGVRLGAV 241 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I W + + V M G A + G+L Sbjct: 242 ASGEWVRVVLPGGELQISWEEGSDVMMMGPAVTVFSGEL 280 >gi|114766737|ref|ZP_01445675.1| diaminopimelate epimerase [Pelagibaca bermudensis HTCC2601] gi|114541056|gb|EAU44112.1| diaminopimelate epimerase [Roseovarius sp. HTCC2601] Length = 279 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 143/286 (50%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T A++ FDQ+ LI DA + Sbjct: 11 LSFMKMHGLGNDFVVLDGRARRITVTPGLARAIADRHRGVGFDQLALIE---TGEGDARL 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T T RG L A++ DG SV+MG P Sbjct: 68 TFYNADGSTAGACGNATRCIARFLMDESGKDRLTLVTERGKLFAQDAGDGLTSVNMGHPQ 127 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA D + P MGNPH FFVE + DL +FG Sbjct: 128 LDWQDIPLASEMDTLAL----------PIEGTPVATGMGNPHCTFFVE-NAEAIDLEAFG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ +A + + L +R WERGVG+T + GS++CA+ VA+ T R Sbjct: 177 PRFEHHPLYPQRTNVQVASLIGPDHLRMRVWERGVGVTLSSGSSSCATAVAAARRGLTGR 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V++++ GG L I+W D+ V+MTG ++G W++ Sbjct: 237 KVTLELDGGTLQIDWRDDG-VWMTGATAHVFDGSFGP---AWLEAA 278 >gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4] Length = 277 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 133/284 (46%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ ++ +I D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKVENPAEVSIKVSDRHFGIGSDGLITIGPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE------NRDGSISV 118 I N DGSE + CGNG+RCV +++ + G V + + V Sbjct: 59 HIYNADGSEAEMCGNGIRCVAKYVYDHHLTDNTEITVETGAGVLTLILFPENGKVQQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPI IP+ DK+ + +G N VSMGNPHA+ FV+ D + Sbjct: 119 DMGEPIHTPAEIPVVADGDKVIDEPIEVGGK----TWNMTCVSMGNPHAVVFVD-DTASF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L ++G L H F + N ++ S ++R WERG T ACG+ CA V+A Sbjct: 174 PLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCACVMACIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 KT V V + GG L IE+ ++NHVFMTG A + + G++++ Sbjct: 234 NGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEIEV 277 >gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101] gi|123056925|sp|Q116P1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101] Length = 278 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 96/277 (34%), Positives = 133/277 (48%), Gaps = 9/277 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K G+GN ++ID R I AI + D ++ D +R Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPG-VKQTDYTMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSE + CGNG+RC+ +F+ + + T GI+V + DG ++VDMG+P Sbjct: 64 IFNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L IP + D VSMGNPH I FVE D+ DLA Sbjct: 124 RLLASEIPTTLA--NADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVE-DVTAIDLAKI 180 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G +P+F E N +V S + + +R WERG G T ACG+ ACASVVA Sbjct: 181 GPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNE 240 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R V+V++ GG L IEW + ++MTG A+K + G + Sbjct: 241 RLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277 >gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299] gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299] Length = 331 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 16/290 (5%) Query: 7 DFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTD-DNTHFDQIMLIHDFQ--DASVDA 62 F K +G+GN +++D R ++S+ L D ++ D Sbjct: 43 KFYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDY 102 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DG+E + CGNG+RC+ F K++ T+ G++ + DG +SVDM Sbjct: 103 SMRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPKAYKVGTLAGLIQPEVRADGQVSVDM 162 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED------- 173 GEP LD +P D VSMGNPH + F ++ Sbjct: 163 GEPTLDPPKVPCTFEA-TQDGAAVRAKMEVDGETWLVTAVSMGNPHCVTFGKEGECDEEG 221 Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + + L+ +G + KHP F N V + + + WERG G T ACG+ ACA+ Sbjct: 222 IKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTGACAT 281 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 VVA+ +T R +V++ GG L IEW + +N V MTG A+ ++G + + Sbjct: 282 VVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331 >gi|103488207|ref|YP_617768.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256] gi|123252939|sp|Q1GPI7|DAPF_SPHAL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|98978284|gb|ABF54435.1| diaminopimelate epimerase [Sphingopyxis alaskensis RB2256] Length = 268 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 99/275 (36%), Positives = 138/275 (50%), Gaps = 16/275 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +VID R +T +A++ DQ++L+ A D +R Sbjct: 4 RFTKMHGLGNDFVVIDARVAPVEMTPARAHAIADRRHGIGCDQLILLEPSTSA--DVKMR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG EV++CGN RCV K ET+ G+L DG V +GEP+ Sbjct: 62 IFNADGGEVEACGNATRCVATL-----IGKPAVIETLAGMLRVTP-ADGGAEVTLGEPVF 115 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPLA D D PV L + V++GNPH +FFV + L G Sbjct: 116 DWDHIPLAMPMDTRD------MPVAWDELEHGAAVNVGNPHIVFFV-PEADAVALDQLGP 168 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E VN+++A + L LR WERGVGLT ACG+ ACA+ VA+ Sbjct: 169 RIETDPLFPERVNVNVASLDGENQLQLRVWERGVGLTQACGTGACATAVAAIRAGLVRSP 228 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L+I W + M+G A + ++G+ D Sbjct: 229 VTVALPGGDLVIRWAPGEPIVMSGAATRVFDGETD 263 >gi|148244654|ref|YP_001219348.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA] gi|166225761|sp|A5CWN5|DAPF_VESOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146326481|dbj|BAF61624.1| diaminopimelate epimerase [Candidatus Vesicomyosocius okutanii HA] Length = 271 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 13/280 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D + I L+ FDQ++++ VD Sbjct: 2 LINFTKMHGLGNDFMVVDNLAGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 I N +GSEV+ CGNG RC RF+ + T +T I+ N D ++ VDMG Sbjct: 62 YVIYNSNGSEVEQCGNGARCFARFVNYKNLTHSNPITVKTRSNIISLHLNDDNTVCVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IPL + + +S+GNPH + V+ D+ D+ Sbjct: 122 KPSFNPADIPLLVP---------QQSEYYQIEGFDLGAISIGNPHCVMLVK-DVNTIDVN 171 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + + + + N+ ++ + ++LR +ERG T ACGS ACA+V Sbjct: 172 TIALKIQQSELLPNQANIGFMQILNTHEINLRVYERGSEETLACGSGACAAVAYGVEQGL 231 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG LIE+ H+F++G A+ +EG+++I Sbjct: 232 LKKNVVVHLSGGDALIEYTQGGHIFLSGPAQFVFEGQVEI 271 >gi|91227529|ref|ZP_01261866.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01] gi|91188553|gb|EAS74845.1| diaminopimelate epimerase [Vibrio alginolyticus 12G01] Length = 276 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP + ++ N LF VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPFKAK--QKEKTYIMRAGDNTLFCG---AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVMSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG ++G+L Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274 >gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782] gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782] Length = 277 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 100/284 (35%), Positives = 153/284 (53%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + +D N + + D ++LI A D + Sbjct: 1 MKFTKMQGLGNDYIYVDCTKNIIDNPSVVSKKVSDRHFGIGSDGLVLIMKSDIA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSISV 118 R+ N DGSE + CGN +RCV +++ +K+ T ET+ GI V ++N+ + V Sbjct: 59 RMFNSDGSESEMCGNAIRCVGKYVFDNGLTDKKNLTIETLAGIKVLDLKIEDNKVVQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL+ K IP+ D+ + + N+ VSMGNPHAI +V+ D + Sbjct: 119 DMGEPILESKQIPVDSEKDRFISESVEVDGYNYK----VTAVSMGNPHAITYVD-DTASF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + H +F + +N V +L +R WERG G T ACG+ A A +VAS Sbjct: 174 PLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASAVLVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + RA ++K+LGG L+IEW + +NHV+MTG A+K +EG+++I Sbjct: 234 NGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEIEI 277 >gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1] gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1] Length = 278 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN V+D + I L FDQ++++ +D Sbjct: 2 LLKFSKMHGLGNDFAVVDAVSRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N +GSEV+ CGNG RC +F+ + + ET +G + DG ++VDMG Sbjct: 62 YRIYNSNGSEVEHCGNGARCFAKFVIEKDLTNKSVINVETKQGQIQLHVQDDGEVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +P + + D ++ + L VS+GNPHA+ V+ L ++ Sbjct: 122 APSFAPADLPFDATEKQDDLYTLNLEGYGSVEL---TPVSVGNPHAVIRVDR-LTDEIVS 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L+ H F VN+ V S + ++LR +ER VG T ACG+ CA++VA Sbjct: 178 TVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCAAIVAGIRQGW 237 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V+ +LGG L IEW + MTG A K +EG++ + Sbjct: 238 LNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQIYL 278 >gi|293602485|ref|ZP_06684931.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553] gi|292819247|gb|EFF78282.1| diaminopimelate epimerase [Achromobacter piechaudii ATCC 43553] Length = 297 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 134/290 (46%), Gaps = 12/290 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D +T + AL DQI+++ A D R Sbjct: 4 NFTKMHGAGNDFVVLDGVRQTIEMTPERARALGDRHFGIGADQILVVERPTVADADFRYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R + GILV E D ++VDMG Sbjct: 64 IFNSDGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAQIATGILVLDEGDDEQVTVDMGST 123 Query: 124 ILDWKLIPLA-------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + + +P R + + P V++ NPHA+ V+ ++ Sbjct: 124 RFEPEALPFDTAGLASMREGEDTLWELDLDAPDGVPAKVWLSAVAISNPHAVQVVD-NVD 182 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F+ VN +V ++ LR +ERG G T ACG+ ACA+V A Sbjct: 183 TAPVAVQGPLIETHPRFARRVNAGFLQVMDRHNVRLRVFERGAGETLACGTGACAAVAAG 242 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 V V+ GG L + W+ + + MTG A+ + G++DI + Sbjct: 243 IRRGLLESPVRVQTRGGVLTVAWNGDQ-LRMTGPAESVFTGQVDIDKLVF 291 >gi|304392645|ref|ZP_07374585.1| diaminopimelate epimerase [Ahrensia sp. R2A130] gi|303295275|gb|EFL89635.1| diaminopimelate epimerase [Ahrensia sp. R2A130] Length = 288 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 135/284 (47%), Positives = 170/284 (59%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V F+KM GIGN+I+V D+RG D +T +A AL D +T FDQ+M IHD D + DA IR Sbjct: 5 VSFSKMNGIGNRIVVADLRGRADVVTEEAARALGHDPDTGFDQLMAIHDAGDENRDATIR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS +CGNG RCVV +L R F F L AK DG ISV+MG P Sbjct: 65 IYNTDGSRAGACGNGTRCVVDWLHQRGGGNDFRFAVDGQPLSAKRLEDGRISVNMGVPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPL+ F +GP+ L P V ++GNPH +FF E+D Y L FG Sbjct: 125 DWTQIPLSEEFADTSGIELEVGPLGAPLLHTPAVANIGNPHCVFFAENDPDTYALDKFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L H +F + N+SIA+VTS ++ LRTWERG GLT ACGSAACA+VV + T R Sbjct: 185 MLEHHMLFPDRANISIAQVTSPTTMKLRTWERGAGLTLACGSAACAAVVCAVRRELTERH 244 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V+V + GG L IEW D+N + MTG A E++G D TG W + Sbjct: 245 VTVSLPGGDLDIEWRDDNFIIMTGTATHEFDGTFDPATGGWERA 288 >gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680] gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680] Length = 282 Score = 225 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 97/287 (33%), Positives = 151/287 (52%), Gaps = 17/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN +VI+ ++ + AI D ++++ +D +D Sbjct: 1 MRFTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDRHFGIGGDGLVIVG--KDRELDV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR------GILVAKENRDGSI 116 F+RI N DGSE + CGN +RCV +F+ R + ++ K + Sbjct: 59 FMRIFNPDGSEPEMCGNAIRCVSKFVWERGLVSTTRISVNTLAGPRYPEVILKNGEVEKV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEPIL+ LIP+ S K+ + VSMGNPH + FV+ + Sbjct: 119 RVDMGEPILERSLIPMLGSPGKVVGEELDTTAGRFRI----TAVSMGNPHCVVFVD-EFS 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ +G +L HP+F N+ A++ ++ +R WERG G T ACG+ ACA++VAS Sbjct: 174 SVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGACATLVAS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 T R +V++ GG L+IEW DNNHV+MTGEAK+ + G++D++ Sbjct: 234 YLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDLR 280 >gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805] gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805] Length = 368 Score = 225 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 139/288 (48%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINA-LSTDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R +D + D ++L Q Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQ-G 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RF + +S+ ET G ++ + +DG Sbjct: 60 QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L + +P S D+ R + + V MGNPH + V+ DL Sbjct: 120 IRVDMGAPFLKPEAVPTLLSPDENGLPRGEVTR--EGLTLSLAAVGMGNPHVVVPVD-DL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L P+F N+ +V S + L++R WERG G T ACG+ ACA++VA Sbjct: 177 ETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 + L ++ +V + GG L I W VFMTG A ++G ++ Sbjct: 237 AFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDGVMNPD 284 >gi|284006598|emb|CBA71859.1| diaminopimelate epimerase [Arsenophonus nasoniae] Length = 269 Score = 225 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 125/273 (45%), Gaps = 10/273 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVYFSPELICRLSDRHRGIGFDQLLVVEAPYDPDLDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF+ + ++ T G L + + V+MG P + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKKLTNKRDIKVSTQSGRLTLSVAENEDVCVNMGVPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P + VVS+GNPH + VE D+ ++A G +L Sbjct: 121 NKVPFKA-----QKSEKTYIIRTQQQTILCGVVSIGNPHCVLQVE-DIDTAEVALLGPML 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 KH F E N+ +V E + LR ERGVG T ACGS ACA+V ++V Sbjct: 175 EKHERFPERANIGFMQVIDHEHIRLRVHERGVGETQACGSGACAAVAIGIQQGLLRKSVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V + GG L I W+ H +FMTG A ++G + Sbjct: 235 VDLPGGMLKIRWNGLGHPLFMTGPATHVYDGVI 267 >gi|93005051|ref|YP_579488.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5] gi|122416051|sp|Q1QE99|DAPF_PSYCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|92392729|gb|ABE74004.1| diaminopimelate epimerase [Psychrobacter cryohalolentis K5] Length = 295 Score = 225 bits (572), Expect = 8e-57, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 141/280 (50%), Gaps = 8/280 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +VID+ ++T D + L FDQ++++ VD Sbjct: 2 LIEFTKMHGLGNDFMVIDLVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFS 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG+EV+ CGNG RC RF+ +R ++ ET GI+ +R G + VDMG Sbjct: 62 YRIFNTDGTEVEQCGNGARCFARFVQARKLSFKQRLRVETASGIISLTTDRYGWVEVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + IP ++ +H+ +V +MGNPHA+ V+ D+ D+ Sbjct: 122 KPKFEPSEIPFTPRAITKIQNAYHLDVNGTPV--QLYVANMGNPHAVIKVD-DVLDADVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F E VN+ ++ + + LR +ERGVG T ACG+ ACA+V Sbjct: 179 TLGKAIESHPAFPERVNVGFMQIMNQRHIRLRVFERGVGETQACGTGACAAVAIGIREGW 238 Query: 242 TN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V ++ GG ++I+W V MTG +EG Sbjct: 239 LDEGEDVRAQLYGGSMVIKWQPGYSVMMTGPTAFVYEGVF 278 >gi|148978772|ref|ZP_01815152.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3] gi|145962193|gb|EDK27477.1| diaminopimelate epimerase [Vibrionales bacterium SWAT-3] Length = 276 Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V K + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEENDLITVNMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPSKIPFKAKQP----EKTYILRTDAHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V++ GG L I W ++MTG A ++G+L Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLYMTGPATHVFDGQL 274 >gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199] gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199] Length = 278 Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 97/276 (35%), Positives = 137/276 (49%), Gaps = 8/276 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R ++ A+ +DQ + I ++ A++ Sbjct: 4 LAFTKMHGLGNDFVVVDGRVHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGT-AYM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DG+E Q+CGNG RCV L + ETI G L+ + DG ++VDMG Sbjct: 63 AIHNPDGTEAQACGNGTRCVAAVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDMGPAN 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA D + V+MGNPHA+FFV D DL++ G Sbjct: 123 LDWRAIPLASDTD-----TLSVTVPEAGTFGPATAVNMGNPHAVFFV-PDAEAVDLSTVG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + +F E N+ V + + L +R WER G+T ACGS ACA++VA+ T R Sbjct: 177 PRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAAVRRGLTER 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +V + GG L I W + HV MTG + G LD Sbjct: 237 RATVVLDGGPLEIFWRSDGHVEMTGPVATSFAGTLD 272 >gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5] gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5] Length = 282 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 15/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ N + A+ D ++LI+ + A D + Sbjct: 1 MKFTKMQGLGNDYVYVNGFTERIENPSEVAVKVSDRHFGIGSDGLILINPSKVA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 + N DGS + CGNGMRCV + + ET+ GI + + + + V Sbjct: 59 EMYNADGSRGEMCGNGMRCVGKYVYDYGLTDKTEIAVETLGGIKYLELSVENGKVVQVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L LIP+ + + + + + VSMGNPH + +++ D+ H Sbjct: 119 DMGKPELKSALIPIVSDEEMVINEPIIVDGKEYKMTG----VSMGNPHTVVYMD-DIEHL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G H F + +N A V +++ +R WERG G T ACG+ ACA V+S Sbjct: 174 DIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACAVAVSSIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGK 285 T V+V++LGG LLI+W + + V+MTG A+ ++G+ + + + Sbjct: 234 NGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGEWNQSSKE 281 >gi|84393559|ref|ZP_00992313.1| diaminopimelate epimerase [Vibrio splendidus 12B01] gi|84375838|gb|EAP92731.1| diaminopimelate epimerase [Vibrio splendidus 12B01] Length = 276 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 94/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V K + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDQITVNMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 178 GPLLESHERFPERVNAGFMQVINREEVRLRVYERGAGETQACGSGACGAVAVGINQGLLA 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V++ GG L I W +FMTG A ++G+L Sbjct: 238 ENVKVRLPGGDLQISWQGPGKPLFMTGPATHVFDGQL 274 >gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110] gi|259595065|sp|C5CND4|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110] Length = 294 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 94/292 (32%), Positives = 137/292 (46%), Gaps = 14/292 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA---SVD 61 + F KM+G GN +V+D +T+ L+ DQI+ + VD Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTLGLTAAQYRFLADRHFGVGADQILTVRPPSKGAAEGVD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 I N DG EV+ CGNG RC +RF + + ET+ GI+ + DG ++VD Sbjct: 63 FQYVIHNADGGEVEQCGNGARCFMRFVREHHLTDKDTVRVETLAGIIEPRMGADGRVTVD 122 Query: 120 MGEPILDWKLIPLA------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 MG PI + +P + +G + + V+SMGNPHA+ V+ Sbjct: 123 MGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQVVD- 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 ++ +A G L+ HP F++ VN +V + LR +ERG G T ACG+ ACA+V Sbjct: 182 NVDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTGACAAV 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284 VA L R V V+ GG L I W H V MTG A +EG +++ Sbjct: 242 VAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDIEVPEL 293 >gi|254230110|ref|ZP_04923506.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|262392885|ref|YP_003284739.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|151937355|gb|EDN56217.1| diaminopimelate epimerase [Vibrio sp. Ex25] gi|262336479|gb|ACY50274.1| diaminopimelate epimerase [Vibrio sp. Ex25] Length = 276 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 134/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILNIEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGEKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS ACA+V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FMTG ++G+L Sbjct: 238 ENVKVSLPGGELRIAWQGPGKPLFMTGPTTHVFDGQL 274 >gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1] gi|166225730|sp|A2SKV9|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1] Length = 296 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 93/291 (31%), Positives = 143/291 (49%), Gaps = 13/291 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D ++ L+ DQ++++ + +D Sbjct: 3 LRFTKMQGAGNDFVVLDATREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDFTY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI+N DGSEV+ CGNG RC VR++ K+ + T G++ + DG ++VDMG Sbjct: 63 RIVNADGSEVEQCGNGARCFVRYVREAGLTKKSAIRVRTAGGVIEPRWLVDGRVTVDMGA 122 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNH-LFLRNPFVVSMGNPHAIFFVEDD----LY 176 P+ + +P A + + F + P++ VVSMGNPHA+ V + Sbjct: 123 PVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSGGVD 182 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ +H F + VN +V S + LR +ERG G T ACG+ ACA+VVA Sbjct: 183 EAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAAVVAG 242 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKT 283 L V V GG L IEW + V+MTG A+ + G++D+ Sbjct: 243 IRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDLPE 293 >gi|29655253|ref|NP_820945.1| diaminopimelate epimerase [Coxiella burnetii RSA 493] gi|154706485|ref|YP_001425375.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111] gi|161830776|ref|YP_001596002.1| diaminopimelate epimerase [Coxiella burnetii RSA 331] gi|164685819|ref|ZP_01945724.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177'] gi|212213429|ref|YP_002304365.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212] gi|212219479|ref|YP_002306266.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154] gi|81628361|sp|Q83AD4|DAPF_COXBU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082831|sp|A9KGY8|DAPF_COXBN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082832|sp|A9N9J6|DAPF_COXBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807497|sp|B6J395|DAPF_COXB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807498|sp|B6J630|DAPF_COXB1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29542525|gb|AAO91459.1| diaminopimelate epimerase [Coxiella burnetii RSA 493] gi|154355771|gb|ABS77233.1| diaminopimelate epimerase [Coxiella burnetii Dugway 5J108-111] gi|161762643|gb|ABX78285.1| diaminopimelate epimerase [Coxiella burnetii RSA 331] gi|164601335|gb|EAX33603.2| diaminopimelate epimerase [Coxiella burnetii 'MSU Goat Q177'] gi|212011839|gb|ACJ19220.1| diaminopimelate epimerase [Coxiella burnetii CbuG_Q212] gi|212013741|gb|ACJ21121.1| diaminopimelate epimerase [Coxiella burnetii CbuK_Q154] Length = 276 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 97/278 (34%), Positives = 138/278 (49%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V+F KM+G GN +VID +T+ I ++ FDQ+++I ++ SVD Sbjct: 3 VNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHF 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC+ RF+ + R+ T+ +L K DG +SV MG Sbjct: 63 RIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTLNEVLELKIQPDGKVSVKMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP S F+ V++ ++ VV++GNPHAI VE + ++ Sbjct: 123 PRFEPTEIPFIAS----GVANFYDIAVDNQIVKLG-VVNIGNPHAIIPVER-INAEEVGK 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ H F EG N+ +V +++ LR +ERG G T ACGS ACA+V Sbjct: 177 LGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACAAVAVGRRCGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 V V GG L I+W V MTG A + G+ Sbjct: 237 QERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGEW 274 >gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 334 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 139/296 (46%), Gaps = 15/296 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQD- 57 +++ V F+K G+GN ++ID R + +T + L D ++ Sbjct: 39 LEARKVPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIGGDGVIFALQPPSE 98 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAK 109 A D +RI N DGSE + CGNG+RC+ +FL + KS + T+ G +V Sbjct: 99 SGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGAYQIHTLAGRIVPV 158 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 N DG+I+VDMGEP L+ +P + + V MGNPHAIF Sbjct: 159 MNEDGTITVDMGEPFLEAAKVPTTLEANAEHDSVVEQTLEANGKTWKCTAVGMGNPHAIF 218 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV D D G L H F N+ +V + L ++ WERG G T ACG+ A Sbjct: 219 FVNDLEKDIDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLIMKVWERGAGPTLACGTGA 278 Query: 230 CASVVASGCLHKT---NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA VA+ K ++ V V + GG L IEW + +N ++MTG A + G+ + Sbjct: 279 CALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYMTGPATFAFAGETKV 334 >gi|28899757|ref|NP_799362.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633] gi|153838744|ref|ZP_01991411.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810] gi|260365175|ref|ZP_05777740.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030] gi|260878125|ref|ZP_05890480.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034] gi|260895818|ref|ZP_05904314.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466] gi|260900849|ref|ZP_05909244.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037] gi|31340032|sp|Q87KJ4|DAPF_VIBPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28808009|dbj|BAC61246.1| diaminopimelate epimerase [Vibrio parahaemolyticus RIMD 2210633] gi|149747830|gb|EDM58714.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ3810] gi|308087181|gb|EFO36876.1| diaminopimelate epimerase [Vibrio parahaemolyticus Peru-466] gi|308092770|gb|EFO42465.1| diaminopimelate epimerase [Vibrio parahaemolyticus AN-5034] gi|308110598|gb|EFO48138.1| diaminopimelate epimerase [Vibrio parahaemolyticus AQ4037] gi|308111034|gb|EFO48574.1| diaminopimelate epimerase [Vibrio parahaemolyticus K5030] Length = 276 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V S + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVSRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 +V V + GG L I W +FMTG A ++G+L Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274 >gi|328472416|gb|EGF43282.1| diaminopimelate epimerase [Vibrio parahaemolyticus 10329] Length = 276 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 135/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G ++ DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKMILDVEDDGEVTVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRAGDKTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + + + LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERVNAGFMQVVNRDHIRLRVYERGAGETQACGSGACGAVAVGILQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 +V V + GG L I W +FMTG A ++G+L Sbjct: 238 ESVKVSLPGGELHISWQGPGKPLFMTGPATHVFDGQL 274 >gi|241767262|ref|ZP_04765000.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN] gi|241362069|gb|EER58195.1| Diaminopimelate epimerase [Acidovorax delafieldii 2AN] Length = 292 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +T L+ DQI+ + +D Sbjct: 3 IRFTKMQGAGNDFVVLDETQGRLGLTPAHYRFLADRHFGVGADQILTVRPSPAEGIDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC R++ + T +T+ G++ + DG ++VDMG Sbjct: 63 VIHNADGGEVEQCGNGARCFARYVRDKGLTTKDTIRVQTLAGVIAPQLTPDGRVTVDMGR 122 Query: 123 PILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P D +P + + + VVSMGNPHA+ V+ D+ Sbjct: 123 PEFDAARVPFDAAGLAPVAQGLGQKWPLALAGSAQDAPVMVAVVSMGNPHAVQLVQ-DVD 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F VN ++ + LR +ERG G T ACG+ ACA+V A Sbjct: 182 TAPVAQTGPLIESHPRFPRRVNAGYLQIVDRGHVRLRVFERGAGETLACGTGACAAVAAG 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDIK 282 L + V V+ GG L I W + + VFMTG A ++G++++ Sbjct: 242 IRLGLLDARVDVQTRGGLLTIAWSGQEADSVFMTGPATLVFDGQIELP 289 >gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331] Length = 280 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 134/280 (47%), Gaps = 9/280 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID H + T L DQ++++ Q VD RI N Sbjct: 1 MHGAGNDFVVIDAIHQHVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG EV+ CGNG R V+F+T + +++ ET+ GI+ K DG I+V MG P+L Sbjct: 61 DGGEVEQCGNGARAFVKFVTDKGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVLAP 120 Query: 128 KLIPL---ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P M D V + VVSMGNPHA+ VE D + + G Sbjct: 121 AAVPFDASNLDSRAMGEDTLWPLDVQGKQVW-ISVVSMGNPHAVQVVE-DSEAAPVLAEG 178 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F VN ++ S+ LR +ERG G T ACG+ ACA+VVA + Sbjct: 179 PLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIRRGLLDS 238 Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 V+V+ GG L I W V MTG A +EG+++I Sbjct: 239 PVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEIEIAA 278 >gi|163745242|ref|ZP_02152602.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45] gi|161382060|gb|EDQ06469.1| diaminopimelate epimerase [Oceanibulbus indolifex HEL-45] Length = 277 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 99/285 (34%), Positives = 142/285 (49%), Gaps = 19/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R N++ A+ FDQ+ +I + DA + Sbjct: 9 LPFMKMHGLGNDFVVLDARAEAINVSPAMAQAIGHRQFGVGFDQLAVI---TQGAGDAQL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL R S T RG L AK+ +G SV+MG P Sbjct: 66 TFYNSDGSLSAACGNATRCIARFLMDETGRDSLHLTTARGDLAAKDAGNGLTSVNMGHPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W +PLAR D + +P MGNPH FFV+ D+ DL+ G Sbjct: 126 LKWDEVPLAREMDTLHL----------PIEGDPVAAGMGNPHCTFFVK-DVEAVDLSDIG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 P+F E N+ +A++ + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 PRAEHDPLFPERTNVQVAQIVGPNHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 AV + + GG L I+W D+ V+MTG + G T +++ Sbjct: 235 AVRIDLDGGTLHIDWRDDG-VWMTGPTMHVFSGTF---TADFLES 275 >gi|121606324|ref|YP_983653.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2] gi|120595293|gb|ABM38732.1| diaminopimelate epimerase [Polaromonas naphthalenivorans CJ2] Length = 295 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 90/293 (30%), Positives = 135/293 (46%), Gaps = 12/293 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M + F KM+G GN +++D ++ L+ DQI+ + Sbjct: 1 MPFMRIRFTKMQGAGNDFVMLDETRGPLGLSPAHYRFLADRHFGVGADQILTVRPSPGEG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 +D I N DG EV+ CGNG RC VRF+ + + + +T+ GI+ DG ++ Sbjct: 61 IDFEYVIHNADGGEVEQCGNGARCFVRFVREQGLTTKDAVKVKTLGGIIEPCMQPDGRVT 120 Query: 118 VDMGEPILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 V+MG P+ + + IP + + + VVSMGNPHA+ V Sbjct: 121 VNMGAPVFELERIPFNPAGLTPQTAGSWQKWPLALDGHAQAAPVFVAVVSMGNPHAVQLV 180 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + D+ + G L+ HP F VN +V S + LR +ERG G T ACG+ ACA Sbjct: 181 D-DVDTAPVLEAGPLIEHHPSFPRRVNAGFMQVVSRSQIRLRVYERGAGETLACGTGACA 239 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLDIK 282 +VVA L + V V GG L IEW + V MTG A +E ++++ Sbjct: 240 AVVAGIRLGLLDSRVDVLTRGGQLTIEWAGTLDAPVMMTGPATTVFESEIEVP 292 >gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5] gi|254767111|sp|A4FXV0|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5] Length = 277 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + +D ++ +S D ++LI A D + Sbjct: 1 MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDVA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGN +RCV +F+ + T ET+ GI V + + + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTISIETLAGIKVLEMTVENGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL + IP+ + + N VSMGNPHAI ++E ++ + Sbjct: 119 DMGEPILKAETIPVLSEKHPVIDEEITAKDY----CYNFTCVSMGNPHAITYIE-NVEEF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H F + N+ + ++ +R WERG G T ACG+ ACA + AS Sbjct: 174 PLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACAVLTASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R +VK+LGG L+IEW++ +NH++MTG A +EG++DI Sbjct: 234 KGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEIDI 277 >gi|262278117|ref|ZP_06055902.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202] gi|262258468|gb|EEY77201.1| diaminopimelate epimerase [Acinetobacter calcoaceticus RUH2202] Length = 281 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTSKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVAEQPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDENHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|119776381|ref|YP_929121.1| diaminopimelate epimerase [Shewanella amazonensis SB2B] gi|166225753|sp|A1SAP5|DAPF_SHEAM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119768881|gb|ABM01452.1| diaminopimelate epimerase [Shewanella amazonensis SB2B] Length = 275 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG ++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PILD IP + + VSMGNPH + V+ D+ +A Sbjct: 121 VPILDPAQIPFKAK-----KFEKTYLLQSAQQTFLCGAVSMGNPHVVLEVD-DITQAPVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +H F +GVN+ +V + + + LR +ERG T ACGS ACA+ V K Sbjct: 175 DVGAQLTRHERFPKGVNVGFMQVVAPDHIKLRVYERGAAETLACGSGACAAAVVGQLQGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L I W ++MTG A++ ++G++ + Sbjct: 235 LGSRVRVDLPGGSLTINWEGEGKPLWMTGPAQQVYDGQIQL 275 >gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2] gi|254767101|sp|B8FSD4|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2] Length = 283 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 100/284 (35%), Positives = 142/284 (50%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++ KM G+GN + ID + L D ++++ A D Sbjct: 1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115 A +RI+N DGSE + CGNG+RC R++ + + ET+ GIL + + G Sbjct: 59 ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSQNPLQVETLAGILTLQLSITGDQVTG 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL + +P+ D + R + F VSMGNPH + FVE D Sbjct: 119 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEF----TAVSMGNPHCVLFVE-DY 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D G + KHP+F N+ V S L ++ WERG G T ACG+ ACASVVA Sbjct: 174 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +T R V+V + GG LLIEW ++N V+MTG A ++G L Sbjct: 234 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 277 >gi|259417389|ref|ZP_05741308.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B] gi|259346295|gb|EEW58109.1| diaminopimelate epimerase [Silicibacter sp. TrichCH4B] Length = 275 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 100/277 (36%), Positives = 139/277 (50%), Gaps = 14/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-ASVDA 62 M+ F KM G+GN +VID R IT ++ FDQ+ +I ++ AS DA Sbjct: 1 MLTFMKMHGLGNDFVVIDARTQDIQITPAMAKGIAHRQLGMGFDQLAVIFAAKEGASADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L + + + T RG L AK+ +G SV+MG Sbjct: 61 HLVFYNADGSTSAACGNATRCIARYLMDQSGKDALNLTTDRGELAAKDAGNGLTSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPL+ D ++ P MGNPH FFVE D L Sbjct: 121 PQLLWDEIPLSEEMDTLEL----------PIEGAPTATGMGNPHCTFFVE-DAELIPLEE 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ IA V + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVMGPDHLRMRVWERGVGVTLASGSSSCATAVAAARKGLT 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V + + GG L I+W ++ V+MTG +G Sbjct: 230 GRNVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGSF 265 >gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51] gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 287 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 100/284 (35%), Positives = 142/284 (50%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++ KM G+GN + ID + L D ++++ A D Sbjct: 5 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPSDKA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115 A +RI+N DGSE + CGNG+RC R++ + + ET+ GIL + + G Sbjct: 63 ARMRILNSDGSEPEMCGNGIRCFARYIYDQGYVSKNPLQVETLAGILTLQLSITGDQVTG 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMGEPIL + +P+ D + R + F VSMGNPH + FVE D Sbjct: 123 VRVDMGEPILKSEQVPVLIQGDPVVGARLDVDGQEFEF----TAVSMGNPHCVLFVE-DY 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D G + KHP+F N+ V S L ++ WERG G T ACG+ ACASVVA Sbjct: 178 ETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACASVVA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +T R V+V + GG LLIEW ++N V+MTG A ++G L Sbjct: 238 AVLNGRTERKVTVHLPGGDLLIEWGEDNRVYMTGPAAYVFKGVL 281 >gi|163803626|ref|ZP_02197491.1| diaminopimelate epimerase [Vibrio sp. AND4] gi|159172574|gb|EDP57434.1| diaminopimelate epimerase [Vibrio sp. AND4] Length = 276 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 130/277 (46%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNVFFSQDLIRRLANRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G + DG ++V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRLKGLTNKYSISVSTKKGKITLAIEDDGEVAVNMGVP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP +++ +I L VSMGNPH V DD+ ++ + Sbjct: 124 EFEPNKIPFKAK----QKEKTYIMRTGEKTLFCG-AVSMGNPHV-VTVVDDVDTAEVETL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E N ++ ++ LR +ERG G T ACGS AC +V + Sbjct: 178 GPLLESHERFPERANAGFMQIVDRNNIRLRVYERGTGETQACGSGACGAVAVGIMQGLLD 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V + GG L I W +FM G A ++G+L Sbjct: 238 ENVKVSLPGGDLRISWQGPGKPLFMAGPATHVFDGQL 274 >gi|212276289|ref|NP_001130140.1| hypothetical protein LOC100191234 [Zea mays] gi|194688384|gb|ACF78276.1| unknown [Zea mays] gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays] gi|219888355|gb|ACL54552.1| unknown [Zea mays] Length = 352 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 132/289 (45%), Gaps = 13/289 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A + D ++ + + Sbjct: 64 SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-D 122 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + SFT T G ++ + DG + Sbjct: 123 ADYTMRIFNSDGSEPEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQV 182 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL IP ++ + VSMGNPH + F ++ Sbjct: 183 KVDMGEPILSGADIPTKL-VATKNKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 241 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L+ G H MF N +V S L +R WERG G T ACG+ ACA Sbjct: 242 TLQIDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACA 301 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 VVA+ + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 302 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSV 350 >gi|317401435|gb|EFV82068.1| DapF protein [Achromobacter xylosoxidans C54] Length = 297 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 91/290 (31%), Positives = 128/290 (44%), Gaps = 12/290 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN +V+D +T + AL DQI+L+ D R Sbjct: 4 NFTKMHGAGNDFVVLDGVRQAIEMTPERARALGDRHFGIGADQILLVERATRPDADFRYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC VRF+ + R E GILV E D ++VDMG Sbjct: 64 IFNADGSEVEHCGNGARCFVRFVHEQGLSDRNPLRAEIATGILVLDEGDDEQVTVDMGST 123 Query: 124 ILDWKLIPLAR-------SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 D +P P V++ NPHA+ V+ ++ Sbjct: 124 RFDPAALPFDTAGLASRTEGQDTLWQLELDVPAGLPRSVALSAVAISNPHAVQVVD-NVD 182 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +A G L+ HP F+ VN ++ S+ LR ERG G T ACG+ ACA+V A Sbjct: 183 TAPVAIVGPLIETHPRFARRVNAGFMQIVDRHSIRLRVHERGAGETLACGTGACAAVAAG 242 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + V V+ GG L I W+ + +TG A+ + G++DI + Sbjct: 243 IRRGLLDSPVRVQTRGGVLTIAWNGEQ-LRLTGPAESVFTGQVDIDKLVF 291 >gi|157377261|ref|YP_001475861.1| diaminopimelate epimerase [Shewanella sediminis HAW-EB3] gi|189082841|sp|A8G0W0|DAPF_SHESH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157319635|gb|ABV38733.1| Diaminopimelate epimerase [Shewanella sediminis HAW-EB3] Length = 280 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 5/279 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ ++ T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKQKIRVSTSNGKITLRLERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+L+ IP + P + + VSMGNPH + VE D+ D+ Sbjct: 121 IPVLEPGRIPFNAKKMEKTYLLQATNPDSTMQTFLFGAVSMGNPHCVLDVE-DIEAADVE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H F +GVN+ ++ + + LR +ERG T ACG+ ACA+ V K Sbjct: 180 GIGALLTRHERFPKGVNVGFMQIINSGHIKLRVYERGAAETLACGTGACAAAVVGQLQGK 239 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V + GG L I W ++MTG A+ ++G++ Sbjct: 240 LDNCVRVDLPGGTLTINWEGEGKPLWMTGPAEHVYDGQI 278 >gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM 15053] gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM 15053] Length = 277 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + ++ +A LS D +++I + A D + Sbjct: 1 MKFTKMHGLGNDYVYVNCFKEKIGNPPEAARILSDRHFGVGSDGLIMICPSEKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + + + ET+ G+ K+ + I V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTNISVETLGGVKYLDLTVKDGKAVLIKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L + IP+ D + + + + VSMGNPHA+ FV+ D+ Sbjct: 119 DMGRPELKPERIPIVSGGDAVISEPIVVDGAIYRMTG----VSMGNPHAVIFVD-DVKGL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L + G H F + VN ARV E++++R WERG G T ACG+ ACA VA Sbjct: 174 ELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACAVAVACIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG LLIEW + + V+MTG A ++G++ I Sbjct: 234 NGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277 >gi|85708150|ref|ZP_01039216.1| diaminopimelate epimerase [Erythrobacter sp. NAP1] gi|85689684|gb|EAQ29687.1| diaminopimelate epimerase [Erythrobacter sp. NAP1] Length = 269 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 101/277 (36%), Positives = 139/277 (50%), Gaps = 17/277 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 VDF KM G+GN +V+D R I++ +AL+ + DQ++++ D D Sbjct: 3 VDFTKMHGLGNDFVVLDARETPLPAISNATASALADRNTGVGCDQLIVLEPSDD--HDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DG EV++CGN R V S T ET G + + G SVDMGEP Sbjct: 61 MRIYNSDGGEVEACGNASRAVAMLHGS-----PATVETAGGAIRLEP-AQGGASVDMGEP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +W IPLA + D + PV L V++GNPH IFFV+ D DLA Sbjct: 115 RFEWDAIPLAYAMDTAN------MPVGWGELEAGIAVNVGNPHVIFFVQ-DADAVDLAEL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + +F E +N+++A S L LR WERG GLT ACG+ ACA+ VA+ Sbjct: 168 GPQIETDALFPERINVNVASRLSDNHLKLRVWERGAGLTRACGTGACATAVAAISRLHMK 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V+V + GG L I W + MTG A + + G + Sbjct: 228 SPVTVSLPGGDLEIAWERGESIVMTGPATESFRGSFE 264 >gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353] gi|224954276|gb|EEG35485.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353] Length = 290 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 15/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ ++ +S D ++LI A D + Sbjct: 9 MKFTKMHGIGNDYVYVNCFEESIKNPAEVSKFVSDRHFGIGSDGLILISPS--AKADFRM 66 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 I N DGS+ + CGNG+RCV + + + ET+ GI K + ++ V Sbjct: 67 NIYNADGSQAEMCGNGIRCVAKYVYDYGLTDKTEISVETLAGIKYLKLQVENGKVATVEV 126 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL+ K IP+A + + + + VSMGNPHAI F++ ++ Sbjct: 127 NMGAPILEPKKIPVAVENNPVVDVPVEVKGKTYHM----TCVSMGNPHAIIFMD-NVKEL 181 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ + G HP+F + N V ++++R WERG T ACG+ ACA+ VA Sbjct: 182 DIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLACGTGACATTVACIL 241 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTG 284 +KT V+V +LGG L I W + V+MTG A ++G++ + G Sbjct: 242 NNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITLPEG 288 >gi|114769927|ref|ZP_01447537.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255] gi|114549632|gb|EAU52514.1| diaminopimelate epimerase [alpha proteobacterium HTCC2255] Length = 280 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G+GN ++ID R + + + +DQ+++I + A D + Sbjct: 11 VPFLKMHGLGNDFVIIDARESESPVNAQIAKVIGDRHFGVGYDQLVVITKSKKA--DVEV 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV + + + T +T G+LVA++ ++ ISV+MG P Sbjct: 69 VFWNSDGSLSDACGNASRCVAKLIMDENNIEEITLKTGSGVLVAQKGQNDLISVNMGHPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +IPL D ++ +P V +GNPH +F V+ D+ DL S+G Sbjct: 129 LDWDVIPLKEKVDLIEL----------PIEGSPGAVGIGNPHCVFVVD-DVNSVDLISWG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + + H +F + N+ ++ +++ RT+ERG G T ACGS ACA V + T R Sbjct: 178 SKIETHELFPKKTNVEFIQIIDQKNIRQRTFERGAGETLACGSGACAVAVVAHLKGLTER 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VSV + GG L I W + ++MTG ++G L Sbjct: 238 NVSVHLDGGELNINWAKDG-IWMTGPTTLVFKGVL 271 >gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282362|sp|Q04W97|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|122282673|sp|Q04X60|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 281 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 145/284 (51%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + ID + +T + I +S D ++ I + + D + Sbjct: 4 LKFTKMEGIGNDYIYIDSTQANIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG--DFMM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 + N DGS + CGNG+RCV +++ K+ ET G+L N+ +S Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFVS 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL IP+ ++ D+ +L VSMGNPH + FV+ D Sbjct: 122 VNMGKPILVPSKIPVNWKDEEAIIDQTFEIAGKNL---KFTAVSMGNPHCVIFVD-DCDQ 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ +HP+F + +N+ V + RTWERG G T ACG+ ACA VA Sbjct: 178 FPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAVTVAGN 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K+ + V + + GG L I+W ++ +V MTG AK+ + G++++ Sbjct: 238 LTGKSGKEVKIDLRGGTLRIQWQESGNVLMTGPAKEIFSGEIEV 281 >gi|293609895|ref|ZP_06692197.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828347|gb|EFF86710.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 281 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + S T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + + + + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFIAEQP----EALYTLELANDQNINIDVVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|238009464|gb|ACR35767.1| unknown [Zea mays] Length = 350 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 131/286 (45%), Gaps = 10/286 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A + D ++ + + Sbjct: 65 SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-G 123 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + FT T G +V + DG + Sbjct: 124 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQV 183 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL IP ++ + VSMGNPH + F ++ Sbjct: 184 KVDMGEPILSGLDIPTKL-LATKNKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 242 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L+ G H MF N +V S L +R WERG G T ACG+ ACA VV Sbjct: 243 VDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVV 302 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A+ + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 303 AAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 348 >gi|299769074|ref|YP_003731100.1| diaminopimelate epimerase [Acinetobacter sp. DR1] gi|298699162|gb|ADI89727.1| diaminopimelate epimerase [Acinetobacter sp. DR1] Length = 281 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 140/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + ++ I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + S T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFIAEQPEALYTLELANDRNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LSNSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|171056820|ref|YP_001789169.1| diaminopimelate epimerase [Leptothrix cholodnii SP-6] gi|229807513|sp|B1Y6S6|DAPF_LEPCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|170774265|gb|ACB32404.1| Diaminopimelate epimerase [Leptothrix cholodnii SP-6] Length = 297 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 93/292 (31%), Positives = 132/292 (45%), Gaps = 15/292 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L DQI+++ VD Sbjct: 3 LHFTKMQGAGNDFVVLDATRAPLALSAADYRFLGDRRFGVGADQILVVERSTTPGVDFRY 62 Query: 65 RIINC-DGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMG 121 RI N G EV+ CGNG RC RF+ + ET+ ++ DG ++VDM Sbjct: 63 RIFNGGSGDEVEQCGNGARCFARFVRDNGLSQQVRVKVETVNSLIELHVEADGRVTVDMN 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR---------NPFVVSMGNPHAIFFVE 172 +PI + LIP + H L+ + V+SMGNPHA+ V Sbjct: 123 QPIFEHALIPFDSAGLSARPHNGHGNGFELWPLQLPGASLPSVDVAVLSMGNPHAVQRV- 181 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ +A G + H F VN +V S + LR +ERG G T ACG+ ACA+ Sbjct: 182 HDVDTAPVAEIGPRVETHARFPRHVNAGFMQVMSRREVRLRVFERGAGETLACGTGACAA 241 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 VVA L + V V+ GG L I W H V MTG A+ + G +D+ T Sbjct: 242 VVAGIRLGWLDPEVDVQTRGGLLTIAWAGLGHPVLMTGPAQTVFTGDIDLPT 293 >gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400] gi|122300905|sp|Q088K8|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400] Length = 275 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 142/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDG+++V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTNSGKITLRIERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+++ IP + + +SMGNPH + VE D+ ++ Sbjct: 121 VPVIEPSQIPFKAK-----KSEKTYLLQTPMQTYLCGAISMGNPHCVIQVE-DVQTVNVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ L +H F +GVN+ +V + + LR +ERG T ACG+ ACA+ K Sbjct: 175 EIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAVGQLQDK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 ++ V V + GG L+I W ++MTG A+ ++G++ + Sbjct: 235 LDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275 >gi|310814821|ref|YP_003962785.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25] gi|308753556|gb|ADO41485.1| diaminopimelate epimerase [Ketogulonicigenium vulgare Y25] Length = 277 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 101/275 (36%), Positives = 144/275 (52%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D RG +T + AL+ FDQ+ +I + D + Sbjct: 9 LPFMKMHGLGNDFVVMDERGLPPRVTPALVAALADRNRGVGFDQMAII--TDGGNADLHL 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R+ R + S T T RG+L+A+E +G SV+MG P+ Sbjct: 67 TFFNADGSPSAACGNATRCIARYEMDRTGKTSLTITTDRGVLLAREEGNGLTSVNMGHPM 126 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 DW IPLA D + L P SMGNPH FFV+ D+ DLA+ G Sbjct: 127 TDWDEIPLAEDVDTLAL----------PILGAPTATSMGNPHCTFFVD-DVMAIDLAAIG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + HP+F E N+ A+V + + +R WERG G+T A GS++CA+ VA+ T Sbjct: 176 PTIEHHPLFPERTNVQFAQVIGEDRIRMRVWERGTGITLASGSSSCATAVAAYRRGLTRA 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG L +EW D+ V+MTG + G L Sbjct: 236 KVEIVLDGGSLQVEWRDDG-VWMTGPTMHAFNGVL 269 >gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA] gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400] Length = 282 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 84/287 (29%), Positives = 130/287 (45%), Gaps = 13/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ N AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVNCFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ G V + R + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKKEITAETGAGVLTLQLFTGADGRVDRVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P L IP+ D D N VSMGNPH + FV+ D+ + Sbjct: 119 VNMGKPRLTRAEIPMLG--DPGDGQVVGQPLNILHTTFNITCVSMGNPHCVIFVD-DVEN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H MF N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 176 FQVEKYGPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 T + + + GG L +EW ++ ++MTG A + + G++++ T Sbjct: 236 LNGLTEKNILNHLSGGDLELEWAEDGFLYMTGPATEVFSGEINLGTL 282 >gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri] gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri] Length = 327 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 19/293 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTD-DNTHFDQIMLIHDFQDA-SVDAF 63 +FAK +G+GN ++ID R +T++ + D ++ + D Sbjct: 36 EFAKYQGLGNDFVLIDNRASDAVPVTAEQAAKMCDRNFGIGADGLIFAMPARPGTDEDYS 95 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R+ N DGSE + CGNG+RC+ RF + + T+ G++ + DG ++VDMG Sbjct: 96 MRMFNSDGSEPEMCGNGIRCLARFVSDVDGSAPRKYKVWTLAGLIQPELRADGQVAVDMG 155 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF----------- 170 +P+L+ +P + D VSMGNPH + F Sbjct: 156 KPVLEPANVPTKLAA-TKDSAAVRCEMDIDGEKWLVTAVSMGNPHCVTFGRAGDGELGAD 214 Query: 171 -VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L+++G H F N V + + + WERG G T ACG+ A Sbjct: 215 GPGLKVEDFALSTYGPKFESHVNFPARTNTEFTEVVNRGYVKMHVWERGAGATLACGTGA 274 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 CA+VVA + +R V++ GG L I W + + +V MTG A+ + G + + Sbjct: 275 CATVVAGVLEGRVDRECVVELPGGPLEIHWREADGNVIMTGPAEPVFTGVITV 327 >gi|260549304|ref|ZP_05823524.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624] gi|260407710|gb|EEX01183.1| diaminopimelate epimerase [Acinetobacter sp. RUH2624] Length = 281 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVAEEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803] gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803] Length = 368 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 141/288 (48%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R + SD + + D ++L Q Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPPQ-G 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RF +S++ ET G+++ + +DG Sbjct: 60 QGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L +++P S D R + + V MGNPH + V+ DL Sbjct: 120 IRVDMGAPFLKPEMVPTLLSPDAKGLPRGEVSR--EGLTLSLAAVGMGNPHVVVPVD-DL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + G L P+F N+ +V + L++R WERG G T ACG+ ACA++VA Sbjct: 177 EAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 + + ++ +V + GG L I W VFMTG A ++G ++ Sbjct: 237 AVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDGVMNPD 284 >gi|86136888|ref|ZP_01055466.1| diaminopimelate epimerase [Roseobacter sp. MED193] gi|85826212|gb|EAQ46409.1| diaminopimelate epimerase [Roseobacter sp. MED193] Length = 292 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 96/284 (33%), Positives = 134/284 (47%), Gaps = 19/284 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D R IT ++ FDQ+ LI DA + Sbjct: 26 PFMKMHGLGNDFVVVDARSHPLEITPALARGIAHRQFGVGFDQLALIE---QGKGDAHLT 82 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RC+ R L + T RG L A + +G SV+MG P L Sbjct: 83 FFNADGSTSAACGNATRCIARHLMDESGKSELHLTTDRGDLFACDAGNGLTSVNMGHPQL 142 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW+ IPL D ++ P MGNPH FFVE D L FG Sbjct: 143 DWRDIPLREETDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAGLIPLTDFGP 191 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 HP++ E N+ +A + + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 192 RYEHHPLYPERTNVQVAHLVGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRR 251 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + + GG L I+W D+ V+MTG + G T +++ Sbjct: 252 VQIDLDGGTLWIDWRDDG-VWMTGPTMHVFSGTF---TAAFLES 291 >gi|114705322|ref|ZP_01438230.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506] gi|114540107|gb|EAU43227.1| diaminopimelate epimerase [Fulvimarina pelagi HTCC2506] Length = 312 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 147/294 (50%), Positives = 197/294 (67%), Gaps = 1/294 (0%) Query: 3 SSM-VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + M V FA+M G+GN+I+V D+RG I+ A AL+ + T FDQIM IHD + D Sbjct: 17 ARMSVPFARMNGLGNEIVVADLRGSKTRISPQAARALAGHEATRFDQIMAIHDPRLDGTD 76 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A IRIIN DGSE ++CGNG RCVV+ L S ++ FTFET GI++A E DG I+VDMG Sbjct: 77 ALIRIINRDGSEAEACGNGTRCVVQALGSENGQRDFTFETRAGIIIAHEADDGMITVDMG 136 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P W+ IPLA F IGP++ L +P V SMGNPHAIF+V++D++ YDL Sbjct: 137 RPRFGWEDIPLAEEFRDTRAIELQIGPIDAPVLHSPSVASMGNPHAIFWVKNDVWSYDLE 196 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 FG +L HP+F E N+SIA+VT+ +SL LRTWERGVGLT ACGSAACA+ V++ + Sbjct: 197 RFGPVLEHHPIFPERANISIAQVTASDSLTLRTWERGVGLTLACGSAACAAAVSAARTGR 256 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 T+RAV+V + GG LLI W +++ V MTG A W G+LD TG +++ +++ Sbjct: 257 TDRAVTVTVPGGDLLIHWREDDKVMMTGPATWMWSGRLDPATGDFVRDAQEEAE 310 >gi|254467049|ref|ZP_05080460.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I] gi|206687957|gb|EDZ48439.1| diaminopimelate epimerase [Rhodobacterales bacterium Y4I] Length = 266 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 141/281 (50%), Gaps = 19/281 (6%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN +V+D R +T ++ FDQ+ ++ + DA + N Sbjct: 2 KMHGLGNDFVVLDARAQDIAVTPAMARGIAHRQFGVGFDQLAVL---TNGKGDAHLTFYN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ R L + T RG L A++ +G SV+MG P LDW+ Sbjct: 59 ADGSTSGACGNATRCIARHLILETGKPELHLTTDRGDLYARDAGNGLTSVNMGAPQLDWQ 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA D ++ P MGNPH FFVE D L FG Sbjct: 119 DIPLAEEADTLEL----------PIEGGPTATGMGNPHCTFFVE-DAEVIPLEEFGQRYE 167 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP++ + N+ +A+VT + + +R WERGVG+T A GS++CA+ VA+ T R V + Sbjct: 168 HHPLYPQRTNVQVAQVTGPDRIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGRKVQI 227 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + GG L I+W ++ V+MTG ++G L T ++++ Sbjct: 228 DLDGGTLWIDWAEDG-VWMTGPTMHVFDGTL---TREFLES 264 >gi|289207305|ref|YP_003459371.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix] gi|288942936|gb|ADC70635.1| diaminopimelate epimerase [Thioalkalivibrio sp. K90mix] Length = 278 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 135/282 (47%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS-VDAF 63 ++F KM G+GN +VID + + L+ DQI+L+ D + Sbjct: 3 LEFTKMHGLGNDFVVIDGTRQDVRLDEATLRQLADRHFGIGCDQILLVEPPGDPTQALFR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + + + ET+ G +V D + V+MG Sbjct: 63 YRIFNADGSEVEQCGNGARCFARFVREQGLTEAREIPVETLGGRIVLHVEDDEHVRVNMG 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P+ + IPL + G L VSMGNPHA+ V+ D+ + Sbjct: 123 QPVFTPEQIPLVAEHEADAYTLDVQGHAITLG-----AVSMGNPHAVLLVD-DVASAPVT 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L+ +H F VN+ A + +DLR +ERGVG T ACGS A A++ + Sbjct: 177 EVGPLIERHECFPRRVNVGFAALRDRTHVDLRVFERGVGETLACGSGAAAAMAILRRRNL 236 Query: 242 TNRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L++ W+ V++TG A + G +D+ Sbjct: 237 VDDEVEVSLPGGTLVLSWNAQAEAPVWLTGPATTVFNGWIDL 278 >gi|89052809|ref|YP_508260.1| diaminopimelate epimerase [Jannaschia sp. CCS1] gi|88862358|gb|ABD53235.1| diaminopimelate epimerase [Jannaschia sp. CCS1] Length = 281 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 137/275 (49%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID RG +T AL FDQ+ +I D+ D + Sbjct: 13 LPFLKMHGLGNDFVVIDARGVARAMTPALARALGDRHRGVGFDQLAVIETGTDS--DVEL 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R + T T RG+L A + DG SV+MGEP+ Sbjct: 71 TFWNADGSTAGACGNATRCIARREMELTGKHRITLRTERGLLEAIDVGDGLTSVNMGEPV 130 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + W+ IPL + D ++ P MGNPH FFVE D DL + G Sbjct: 131 MGWRDIPLKGACDTLNL----------PIDGTPVATGMGNPHCTFFVE-DADAIDLETLG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 +HP+F + N+ A V + L +R WERGVG+T A GS++CA V++ T R Sbjct: 180 AKYERHPLFPQRTNVQFAHVVGPDHLRMRVWERGVGVTLASGSSSCAVAVSAARRGLTGR 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG + ++W + V+MTG + G+L Sbjct: 240 KVRLTLDGGEISVDWRSDG-VWMTGPTAHVFSGEL 273 >gi|255291937|dbj|BAH90425.1| diaminopimelate epimerase [uncultured bacterium] Length = 305 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 139/303 (45%), Gaps = 25/303 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L+ DQI+ + VD Sbjct: 3 IRFTKMQGAGNDFVVLDETTALLGLSAAQYRWLADRHFGVGADQILSVRAAPGPGVDFEY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DG EV+ CGNG RC VR++ R ++ + G++ E DG ++VDMG Sbjct: 63 VIHNADGGEVEQCGNGARCFVRYVRERGLTDKRRVHVQVRHGVIELVEQADGRVTVDMGA 122 Query: 123 PILDWKLIPLAR------SFDKMDRDRFHIGPVN-------------HLFLRNPFVVSMG 163 P+ + IP + P++ + N V+SMG Sbjct: 123 PVFELPRIPFDPAGLTPVPAGADAAHLWQWWPLDLGRSAATAVAEPASDAIVNVAVLSMG 182 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 NPHA+ V D+ +A G L+ HP F + VN ++ ++ LR +ERGVG T Sbjct: 183 NPHAVQLV-ADVEAAPVARHGALIESHPAFPKRVNAGFMQILDRAAVRLRVYERGVGETL 241 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDI 281 ACG+ ACA+VVA L + V V GG L IEW + VFMTG A +EG+ +I Sbjct: 242 ACGTGACAAVVAGVRLGLLDSRVDVHTRGGVLSIEWAGGERDPVFMTGPATTVFEGETEI 301 Query: 282 KTG 284 Sbjct: 302 PEL 304 >gi|296284754|ref|ZP_06862752.1| diaminopimelate epimerase [Citromicrobium bathyomarinum JL354] Length = 269 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 17/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +++D R + + I AL+ FDQ++++ +A D Sbjct: 3 LPFIKMHGLGNDFVILDGREIDLPSLDTAQIRALADRHRGIGFDQLIVLGPSDEA--DLA 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DG EV++CGN R V + T G L + MG Sbjct: 61 MRIHNADGGEVEACGNATRAVAVLHGQ-----PASIATAGGTLRVRPGE-NMAEAAMGRA 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W+ IPLA + D + P+ L P V++GNPH +FFV+ D L + Sbjct: 115 RFHWQDIPLAYAMDTRE------MPLGWDMLERPSAVNVGNPHIVFFVD-DARAVPLETL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F E +N+++A++ S +++ LR WERG GLT ACG+ ACA+ + + Sbjct: 168 GPEIETDPLFPERINVNVAQILSRKAIRLRVWERGAGLTLACGTGACATATVAYRQGLVD 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V + GG L I + + M G A + + G ++ Sbjct: 228 AEVEVTLPGGTLTIRHDEEGGIHMAGPASEAFRGTFELD 266 >gi|78224185|ref|YP_385932.1| diaminopimelate epimerase [Geobacter metallireducens GS-15] gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15] Length = 282 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 128/285 (44%), Gaps = 13/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVNCFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ G + + + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKKEITAETGAGILTLQLVPGADGKIEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L IP+A + D N VSMGNPH + FV+ D+ Sbjct: 119 VNMGVPRLKRAEIPMAG--EPADGQIVSQPLNILHTTFNITCVSMGNPHCVIFVD-DVES 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 176 FQVEKYGPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T + + + GG L +EW D+ ++MTG A + + G++D+ Sbjct: 236 LNCLTEKKILNHLSGGDLELEWADDGFLYMTGPATEVFSGEIDLA 280 >gi|184159194|ref|YP_001847533.1| diaminopimelate epimerase [Acinetobacter baumannii ACICU] gi|332876023|ref|ZP_08443809.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059] gi|229807491|sp|B2HX82|DAPF_ACIBC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183210788|gb|ACC58186.1| Diaminopimelate epimerase [Acinetobacter baumannii ACICU] gi|323519138|gb|ADX93519.1| diaminopimelate epimerase [Acinetobacter baumannii TCDC-AB0715] gi|332735889|gb|EGJ66930.1| diaminopimelate epimerase [Acinetobacter baumannii 6014059] Length = 281 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 138/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP K N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVAEEPKALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|226505860|ref|NP_001141344.1| hypothetical protein LOC100273435 [Zea mays] gi|194704094|gb|ACF86131.1| unknown [Zea mays] gi|223948299|gb|ACN28233.1| unknown [Zea mays] Length = 353 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 131/289 (45%), Gaps = 13/289 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A + D ++ + + Sbjct: 65 SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-G 123 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + FT T G +V + DG + Sbjct: 124 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQV 183 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL IP ++ + VSMGNPH + F ++ Sbjct: 184 KVDMGEPILSGLDIPTKL-LATKNKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 242 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L+ G H MF N +V S L +R WERG G T ACG+ ACA Sbjct: 243 VLQVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACA 302 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 VVA+ + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 303 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 351 >gi|118594102|ref|ZP_01551449.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181] gi|118439880|gb|EAV46507.1| diaminopimelate epimerase [Methylophilales bacterium HTCC2181] Length = 286 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G GN +VI+ + +TS I L+ FDQ+++I A + Sbjct: 7 IPFSKMHGSGNDFVVINQIDNNYRLTSSQIKKLADRNFGIGFDQLLIIEKPTQAPAEFKY 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC + + T ET G++V +DG ISVDMG Sbjct: 67 RIFNADGSEVSQCGNGARCFFHYLRMKKLSSSNEITVETQSGMIVLSYKKDGLISVDMGV 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ D+K IP + + + +SMGNPHA+ + L DL Sbjct: 127 PVYDYKQIPF------ISTNTTLPTVTVDDKSYEFYPISMGNPHAVIKL-ASLQGVDLVK 179 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L K F + VN+ +V +L L+ +ERG G+T ACGS ACA+ V + Sbjct: 180 IGKVLQKSAAFPDSVNVGFVQVIDKHTLSLKVYERGSGMTLACGSGACAAGVVAIQKRWA 239 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VSV + GG L I V + G A+ ++G+L+ Sbjct: 240 QNPVSVLVDGGVLTINLTPQGSVELLGPAEWIFDGELN 277 >gi|222054498|ref|YP_002536860.1| Diaminopimelate epimerase [Geobacter sp. FRC-32] gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter sp. FRC-32] Length = 278 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D +D AI + + D ++LI A V + Sbjct: 1 MKFTKMHGAGNDYVYVDCFSEQVENPADVAIKVSNRNFGIGSDGLILIMPSDKAHV--RM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ G + N+ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P L IP++ D N SMGNPH + FV+ D+ + Sbjct: 119 VNMGKPRLTRGEIPMSGPADARVVSEPLNILHT---TFNITCASMGNPHCVIFVD-DVDN 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 175 FQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T++ + + GG L +EW ++ ++MTG A + + G++ I Sbjct: 235 LNGLTDKKILNHLSGGDLELEWSEDGFLYMTGPAVEVFSGEIAI 278 >gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305] gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305] Length = 281 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 129/283 (45%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN + +D+ + A D ++LI A DA Sbjct: 1 MKFTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPSDKA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117 +R+ N DGSE + CGNG+RCV +++ + G + ++ R + Sbjct: 59 MRMFNADGSEAEMCGNGLRCVAKYVYDHDIARKEELTLETGAGLLTVQVFPEDGRVKQVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL+ IP + D +G VSMGNPH I FV+ L Sbjct: 119 VNMGQPILESAKIPTTLAGDPPVEADLQVGDQ----TLKVTCVSMGNPHCITFVDK-LSD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + KH +F VN V S L++R WERG G T ACG+ ACA VA Sbjct: 174 EWVHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGACAVAVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 + R V++ +LGG L +EW + VFMTG A + + G+ Sbjct: 234 LSGRCERKVTIHLLGGDLELEWSEETGEVFMTGPAVEVYSGEW 276 >gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149] gi|153796512|gb|EDN78932.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149] Length = 292 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ N + A+ + + D ++LI+ + A D + Sbjct: 16 MKFTKMQGLGNDYVYVNGFEERIENPSEMAVKVSNRNFGVGSDGLILINPSEKA--DFEM 73 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + + ET+ GI ++ + + V Sbjct: 74 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVEDGKVVLVRV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL IP+ + + + VSMGNPHA+ F++ D+ H Sbjct: 134 DMGSPILTPAQIPVIADEAEAVAVPILVDETEYQM----TCVSMGNPHAVIFMD-DIEHL 188 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G H F VN +V + +R WERG G T ACG+ ACA VA Sbjct: 189 EIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGACAVAVACIL 248 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG LLIEW + N ++MTG A+ ++G Sbjct: 249 GGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDGVWK 291 >gi|169795021|ref|YP_001712814.1| diaminopimelate epimerase [Acinetobacter baumannii AYE] gi|213158316|ref|YP_002320367.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057] gi|215482569|ref|YP_002324761.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294] gi|260556501|ref|ZP_05828719.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606] gi|301345398|ref|ZP_07226139.1| diaminopimelate epimerase [Acinetobacter baumannii AB056] gi|301511588|ref|ZP_07236825.1| diaminopimelate epimerase [Acinetobacter baumannii AB058] gi|301594792|ref|ZP_07239800.1| diaminopimelate epimerase [Acinetobacter baumannii AB059] gi|332854281|ref|ZP_08435281.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150] gi|332865657|ref|ZP_08436483.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113] gi|226724200|sp|B7GY71|DAPF_ACIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724201|sp|B7I5Y5|DAPF_ACIB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807490|sp|B0VDN4|DAPF_ACIBY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169147948|emb|CAM85811.1| diaminopimelate epimerase [Acinetobacter baumannii AYE] gi|213057476|gb|ACJ42378.1| diaminopimelate epimerase [Acinetobacter baumannii AB0057] gi|213989050|gb|ACJ59349.1| diaminopimelate epimerase [Acinetobacter baumannii AB307-0294] gi|260409760|gb|EEX03060.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 19606] gi|332728097|gb|EGJ59486.1| diaminopimelate epimerase [Acinetobacter baumannii 6013150] gi|332735178|gb|EGJ66258.1| diaminopimelate epimerase [Acinetobacter baumannii 6013113] Length = 281 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVAEEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|16127916|ref|NP_422480.1| diaminopimelate epimerase [Caulobacter crescentus CB15] gi|221236736|ref|YP_002519173.1| diaminopimelate epimerase [Caulobacter crescentus NA1000] gi|21362486|sp|Q9A280|DAPF_CAUCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767096|sp|B8GVW2|DAPF_CAUCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|13425448|gb|AAK25648.1| diaminopimelate epimerase [Caulobacter crescentus CB15] gi|220965909|gb|ACL97265.1| diaminopimelate epimerase [Caulobacter crescentus NA1000] Length = 288 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 8/279 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN------THFDQIMLIHDFQDASVD 61 F KM G+GN +VI + T + I A++ DQ++ I + Sbjct: 5 FLKMNGLGNDFVVIQTLTEAFDPTPEQIRAIAKRPGVDGKGGIGCDQVIAIDPPRAEGAS 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A++R N DG +CGNG RCV L + + F+T+ G L D ++VDMG Sbjct: 65 AYVRFWNSDGEVAGACGNGTRCVAWLLMQSAGKDAVAFDTVAGRLSGVAAGDKLVTVDMG 124 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P LDW IPLA + +R +GP++ + P VSMGNPH +FFV+ + Sbjct: 125 PPGLDWTQIPLAEEMN-TERVELQVGPIDAPLVHTPVCVSMGNPHVVFFVDAPVTDDFAR 183 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+L+ HP+F EGVN+ A + S + + L+ WERG GLT ACG+ ACA+ VA+ Sbjct: 184 GTGSLVEHHPLFPEGVNVGFAHIASRDHIRLKVWERGAGLTQACGTGACAAQVAAVRRGL 243 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T+R V+ G L IEW + + HV MTG E+ GKL Sbjct: 244 TDRKARVEFDTGSLTIEWRESDGHVIMTGPITMEYAGKL 282 >gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus] Length = 285 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 8/280 (2%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 + +V F+K +G+GN +++D R + +T++ +L D ++ D + Sbjct: 4 TKLVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSD-EM 62 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV 118 D +RIIN DGSE + CGNG+RC+ RFL +K + T+ G ++ DG ++V Sbjct: 63 DYSMRIINSDGSEPEMCGNGIRCMARFLADLEGKKKAEYKIHTLAGTIIPMAREDGLVTV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L+ +P + V+ VSMGNPHA+ FV D+ Sbjct: 123 DMGPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKD-WEVTCVSMGNPHAVVFV-PDVDAL 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G HP F +N +V + + + WERG G+T ACG+ ACA VVAS Sbjct: 181 DLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTGACALVVASVL 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 +R +V + GG L IEW + + V+MTG A+ ++G Sbjct: 241 AGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQG 280 >gi|307943539|ref|ZP_07658883.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4] gi|307773169|gb|EFO32386.1| diaminopimelate epimerase [Roseibium sp. TrichSKD4] Length = 321 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 125/298 (41%), Positives = 175/298 (58%), Gaps = 5/298 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M S+ V F KM G+GN +V D R N+ + I AL D FDQ++ + Sbjct: 15 MASARVPFLKMNGLGNDFVVWDARSSAFNLPKEKIAALGNRDTGIGFDQMITVERSPL-G 73 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-RDGSISV 118 VDAF+RI NCDGS+V +CGN RCV R L T ET G+L A +++V Sbjct: 74 VDAFMRIHNCDGSQVDACGNATRCVGRLLMEEKSTDRATIETKAGLLNAFATAVPRTVTV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L+W IPLA F IGP++ +L P +SMGNPHAIF+V+ D+ + Sbjct: 134 DMGKPRLNWDEIPLAEEFYDTRAIELQIGPIDAPYLHTPAAISMGNPHAIFWVK-DVEAH 192 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G LL HP+F EG N+S+A V + + L+ WERG GLT ACG+AACA+ VA+ Sbjct: 193 DLGTIGPLLEHHPVFPEGANISLAHVFAENQIRLKVWERGAGLTQACGTAACAAAVAAAR 252 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 K R ++ + GG + IEW + ++HV MTG + E+EG++D+ T +W + D+A Sbjct: 253 DDKAGRKSTIHLPGGPIEIEWREGDDHVLMTGLTEVEFEGEVDLDTLEWQRTGPGDDA 310 >gi|254508790|ref|ZP_05120901.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16] gi|219548247|gb|EED25261.1| diaminopimelate epimerase [Vibrio parahaemolyticus 16] Length = 269 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 130/273 (47%), Gaps = 10/273 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + D I L+ FDQ++++ D D RI N Sbjct: 1 MHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF+ + ++ T +G +V D ++V+MG P + Sbjct: 61 DGSEVEQCGNGARCFARFVRMKGLTNKYSISVSTKKGKMVLNIEEDDQVTVNMGVPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP ++ +I L VSMGNPH V DD+ D+ + G LL Sbjct: 121 NKIPFKAK----QTEKTYILRAEDKTLFCG-AVSMGNPHV-VTVVDDVATADVETLGPLL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN +V S ++LR +ERG G T ACGS AC +V + V+ Sbjct: 175 ESHERFPERVNAGFMQVISRNEVNLRVYERGAGETQACGSGACGAVAVGVVQGLLDEHVT 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V + GG L I W +FMTG A ++G+L Sbjct: 235 VHLPGGDLKISWKGPGKPLFMTGPATHVFDGQL 267 >gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4] gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4] Length = 278 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + +D AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVNCFSERVDNPADVAIKVSNRNFGIGSDGLILIMPSDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ G + N+ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVGKKEISAETGAGILTLQLFTNEANKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L IP+ + + SMGNPH + FV+ D+ + Sbjct: 119 VNMGRPRLTRSEIPMTGEAGAKVINEPLNILHT---TFHITCASMGNPHCVIFVD-DVEN 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G ++ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 175 FQVEKYGPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAVCVAGA 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ ++MTG A + + G+++I Sbjct: 235 LNGLTEKKILNHLSGGDLELEWAEDGFLYMTGPAVEVFSGEIEI 278 >gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5] gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5] Length = 282 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 11/283 (3%) Query: 11 MEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V+D +T + AL+ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 CDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG P+ Sbjct: 61 CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120 Query: 127 WKLIPL-ARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P A D R + P++ R VSMGNPHA+ V+ D+ Y + G Sbjct: 121 PAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-DVEAYPVLEEG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ H F + VN ++ S + LR +ERG G T ACG+ ACA+V A + Sbjct: 180 PLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239 Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 V+V GG L I W + + M G A +EG++D+ Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282 >gi|239500989|ref|ZP_04660299.1| diaminopimelate epimerase [Acinetobacter baumannii AB900] Length = 281 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|229807519|sp|A3M804|DAPF_ACIBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|193078107|gb|ABO13048.2| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978] Length = 281 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|225439868|ref|XP_002278566.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 370 Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 138/291 (47%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F K G+GN +++D R + +T + L D ++ Sbjct: 82 ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPG-ING 140 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + ++SFT T G++V + DG + Sbjct: 141 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 200 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171 VDMG+PIL +P + D+ N VSMGNPH + F Sbjct: 201 KVDMGKPILKALDVPTKLPAN-KDQSVVKSELNVDGVSWNVTCVSMGNPHCVTFGTKGGQ 259 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +LA G H MF N +V S L +R WERG G T ACG+ ACA Sbjct: 260 NLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGACA 319 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VVA+ R+ +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 320 VVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 370 >gi|86148172|ref|ZP_01066470.1| diaminopimelate epimerase [Vibrio sp. MED222] gi|218710944|ref|YP_002418565.1| diaminopimelate epimerase [Vibrio splendidus LGP32] gi|254767122|sp|B7VMD4|DAPF_VIBSL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85834019|gb|EAQ52179.1| diaminopimelate epimerase [Vibrio sp. MED222] gi|218323963|emb|CAV20325.1| Diaminopimelate epimerase [Vibrio splendidus LGP32] Length = 276 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 133/277 (48%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+KM G+GN +V+D + + D I L+ FDQ++++ D D R Sbjct: 4 HFSKMHGLGNDFMVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEP 123 I N DGSEV+ CGNG RC RF+ + ++ T +G +V K + I+V+MG P Sbjct: 64 IFNADGSEVEQCGNGARCFARFVRMKGLTNKYSINVSTKKGKMVLKIEDNDLITVNMGIP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + IP ++ +I + L VSMGNPH V DD+ D+ + Sbjct: 124 EFEPGKIPFKAKQP----EKTYILRTDVHTLFCG-AVSMGNPHV-VTVVDDVDTADVDTL 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL H F E VN +V + E + LR +ERG G T ACGS AC +V Sbjct: 178 GPLLESHERFPERVNAGFMQVVNREEVRLRVYERGAGETQACGSGACGAVAVGITQGLLA 237 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 V V++ GG L I W + MTG A ++G+L Sbjct: 238 ENVKVRLPGGDLHISWQGPGKPLLMTGPATHVFDGQL 274 >gi|22124300|ref|NP_667723.1| diaminopimelate epimerase [Yersinia pestis KIM 10] gi|45442954|ref|NP_994493.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str. 91001] gi|51594545|ref|YP_068736.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953] gi|108806175|ref|YP_650091.1| diaminopimelate epimerase [Yersinia pestis Antiqua] gi|108810285|ref|YP_646052.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|145600712|ref|YP_001164788.1| diaminopimelate epimerase [Yersinia pestis Pestoides F] gi|153949600|ref|YP_001399202.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758] gi|153997099|ref|ZP_02022232.1| diaminopimelate epimerase [Yersinia pestis CA88-4125] gi|162421020|ref|YP_001605134.1| diaminopimelate epimerase [Yersinia pestis Angola] gi|165926336|ref|ZP_02222168.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165939113|ref|ZP_02227664.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. IP275] gi|166011684|ref|ZP_02232582.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213579|ref|ZP_02239614.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401857|ref|ZP_02307345.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420950|ref|ZP_02312703.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426291|ref|ZP_02318044.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170026222|ref|YP_001722727.1| diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII] gi|186893545|ref|YP_001870657.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+] gi|218930848|ref|YP_002348723.1| diaminopimelate epimerase [Yersinia pestis CO92] gi|229837175|ref|ZP_04457340.1| diaminopimelate epimerase [Yersinia pestis Pestoides A] gi|229839535|ref|ZP_04459694.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900098|ref|ZP_04515235.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. India 195] gi|229900456|ref|ZP_04515585.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|270488810|ref|ZP_06205884.1| diaminopimelate epimerase [Yersinia pestis KIM D27] gi|294505509|ref|YP_003569571.1| diaminopimelate epimerase [Yersinia pestis Z176003] gi|17380442|sp|P46357|DAPF_YERPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81640737|sp|Q66FZ5|DAPF_YERPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123246795|sp|Q1CNH8|DAPF_YERPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123372750|sp|Q1CBM6|DAPF_YERPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225764|sp|A4TRA3|DAPF_YERPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167012039|sp|A7FD74|DAPF_YERP3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813257|sp|B2K072|DAPF_YERPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813258|sp|A9R8K5|DAPF_YERPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813259|sp|B1JPE1|DAPF_YERPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21957072|gb|AAM83974.1|AE013639_3 diaminopimelate epimerase [Yersinia pestis KIM 10] gi|45437821|gb|AAS63370.1| diaminopimelate epimerase [Yersinia pestis biovar Microtus str. 91001] gi|51587827|emb|CAH19430.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 32953] gi|108773933|gb|ABG16452.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|108778088|gb|ABG12146.1| diaminopimelate epimerase [Yersinia pestis Antiqua] gi|115349459|emb|CAL22432.1| diaminopimelate epimerase [Yersinia pestis CO92] gi|145212408|gb|ABP41815.1| diaminopimelate epimerase [Yersinia pestis Pestoides F] gi|149289405|gb|EDM39483.1| diaminopimelate epimerase [Yersinia pestis CA88-4125] gi|152961095|gb|ABS48556.1| diaminopimelate epimerase [Yersinia pseudotuberculosis IP 31758] gi|162353835|gb|ABX87783.1| diaminopimelate epimerase [Yersinia pestis Angola] gi|165912886|gb|EDR31512.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. IP275] gi|165921860|gb|EDR39057.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. F1991016] gi|165989453|gb|EDR41754.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205252|gb|EDR49732.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961079|gb|EDR57100.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048750|gb|EDR60158.1| diaminopimelate epimerase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054810|gb|EDR64614.1| diaminopimelate epimerase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752756|gb|ACA70274.1| Diaminopimelate epimerase [Yersinia pseudotuberculosis YPIII] gi|186696571|gb|ACC87200.1| diaminopimelate epimerase [Yersinia pseudotuberculosis PB1/+] gi|229682475|gb|EEO78562.1| diaminopimelate epimerase [Yersinia pestis Nepal516] gi|229686878|gb|EEO78957.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. India 195] gi|229695901|gb|EEO85948.1| diaminopimelate epimerase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706118|gb|EEO92127.1| diaminopimelate epimerase [Yersinia pestis Pestoides A] gi|262363575|gb|ACY60296.1| diaminopimelate epimerase [Yersinia pestis D106004] gi|262367503|gb|ACY64060.1| diaminopimelate epimerase [Yersinia pestis D182038] gi|270337314|gb|EFA48091.1| diaminopimelate epimerase [Yersinia pestis KIM D27] gi|294355968|gb|ADE66309.1| diaminopimelate epimerase [Yersinia pestis Z176003] gi|320013557|gb|ADV97128.1| diaminopimelate epimerase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 274 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PDFEPQTVPFRAA---KAEKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V S + + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLENHERFPERANIGFMQVVSRDHIRLRVYERGAGETQACGSGACAAVAVGVVQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V++ GG L I W H ++MTG A ++G + + Sbjct: 235 NENVHVELPGGSLHIRWQGPGHPLYMTGPATHVYDGFIHL 274 >gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6] gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6] Length = 282 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 11/283 (3%) Query: 11 MEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V+D +T + AL+ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 CDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG P+ Sbjct: 61 CDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120 Query: 127 WKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P S + R VSMGNPHA+ V+ D+ Y + G Sbjct: 121 PAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVD-DVEAYPVLEEG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ +H F + VN ++ S + LR +ERG G T ACG+ ACA+V A + Sbjct: 180 PLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDS 239 Query: 245 AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 V+V GG L I W + + M G A +EG++D+ Sbjct: 240 PVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLTA 282 >gi|262376586|ref|ZP_06069814.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145] gi|262308296|gb|EEY89431.1| diaminopimelate epimerase [Acinetobacter lwoffii SH145] Length = 281 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + I L+ FDQ++++ S D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDPVTIQRLANRNFGIGFDQLLVVEPPDVPSADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC +F+ R + +T GI+ + +G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFAKFVHDRQLTTKTKIKVQTKSGIVEPELGANGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + + VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPQEIPFVADAP----ESLYDIDLAGGEKLTIDVVNMGNPHAVTIV-PDVIAADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F VN ++ + LR +ERGVG T ACG+ ACA+ ++ Sbjct: 177 RIGPQVEAHARFPARVNAGFMQIIDEKHARLRVYERGVGETLACGTGACAAAISGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V +++ GG L IEW + + V+MTG +EG+LD++ Sbjct: 237 LSSKVEIELAGGKLQIEWKEGDVVWMTGPTATVYEGRLDLR 277 >gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303] gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303] Length = 323 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 135/285 (47%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++ID R N + + D ++L + A Sbjct: 1 MLQFSKYQGLGNDFVLIDGREGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D ++I N DGS + CGNG+RC+ RF + + + + ET+ GI+ DG Sbjct: 60 DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P LD + IP + + N V MGNPH I VE DL Sbjct: 120 ICVDMGSPFLDPESIPTTLTIGSAGLPQGEC--HLGGTSLNVAAVGMGNPHVIVPVE-DL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +G +L KH F N+ ++ S L++R WERG G T ACG+ ACAS+VA Sbjct: 177 ESIPFEKWGQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACASLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L ++ V + GG L I W VFMTG A+ ++G L Sbjct: 237 ACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDGVL 281 >gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574] gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574] Length = 281 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 138/288 (47%), Gaps = 16/288 (5%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ G+GN ++++ G D+ + A D ++L+ D D Sbjct: 1 MHFTKVHGLGNDFILVNAGMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLDS--GVADV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----I 116 +RIIN DGSE + CGN +RCV ++L + ET+ GI+V + + + Sbjct: 59 RMRIINSDGSEAEMCGNAIRCVAKYLYEHGIVRKDEIKVETLAGIIVPQIIQKNGRVEAV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L+ + IP+ + ++ + + VSMGNPH + FV DL Sbjct: 119 RVDMGAPRLERQEIPMLGTPGQVVNEPLQVNGQTFKI----TAVSMGNPHCVIFV-PDLS 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G + HP F N+ +V S + + WERG G T ACG+ ACA A Sbjct: 174 VIPLNQIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACAVATAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 T R+V+V + GG L IEW DN ++MTG A++ + G+ + G Sbjct: 234 VLNGLTARSVTVHLPGGSLHIEWADNGRLYMTGPAEEVFNGEYIVYNG 281 >gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus sp. 18P13] Length = 279 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ N ++ D ++LI Q A D + Sbjct: 1 MKFTKMQGIGNDYIYVNCFEEQVVNPEQLSVRLSDRRFGIGGDGLILIMPSQIA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 RI N DGSE CGNG RC+ +++ + T ET GI + + G ++V Sbjct: 59 RIFNADGSEAMMCGNGTRCIGKYVYEHGLTNKTHITLETNSGIKYLELHCTGDQVTSVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ IL + IP+ + + L VS+GNPHA+ F + + Sbjct: 119 DMGKAILTPREIPVESDSQEPFVAKPVQVG---DRLERLTCVSVGNPHAVVFCDR-VEDL 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G L H +F + VN RV +L +R WERG G T ACG+ ACA+ VA+ Sbjct: 175 DLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACATTVAAVL 234 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + VK+ GG L I + + V MTG A++ ++G++++ Sbjct: 235 NGYCPQGEPILVKLRGGDLTITYQADGTVMMTGPAEEVFQGEINL 279 >gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii] gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii] Length = 318 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 16/293 (5%) Query: 1 MQSSM-VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQD 57 M S+ + F+K +G+GN +++D R + + T + + D ++ Sbjct: 26 MASAKPLTFSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVIFALPP-V 84 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ +F + + T+ G++ + DG Sbjct: 85 GDTDLTMRIFNSDGSEPEMCGNGIRCLAKFVSDIDNAAPRKYKIHTLAGLIQPEMLADGQ 144 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV---- 171 + VDMG PIL+ +P + V VSMGNPHA+ + Sbjct: 145 VRVDMGTPILEGPKVPTTLA-PTQGSTVVQQDLVVEGKTYKVTCVSMGNPHAVIYSCDGE 203 Query: 172 --EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + D +LA+ G ++ +F N V S + + WERG G T ACG+ A Sbjct: 204 PIKIDDLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRTLACGTGA 263 Query: 230 CASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CA VVA + +R V + GG L IEW +NH++MTG A+ + G+L Sbjct: 264 CALVVAGILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316 >gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544] gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544] Length = 278 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 134/283 (47%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +G GN +++D + + + A D ++ + A D + Sbjct: 1 MRFSKWQGCGNDFVLVDCFKENVSDFAAFAKKVCDRHYGIGGDGVLYVLPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRD----GSISV 118 RI N DGSE + CGNG+RC +++ FT ET GILV + + + V Sbjct: 59 RIFNTDGSEAEMCGNGIRCFARYLHDFGLTEKEEFTVETGAGILVPRLQIEAGKVTGVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP+L+ + IP+ VSMGNPH + FVE D + Sbjct: 119 DMGEPVLEGEKIPVTG---FGMNRVIEEDIEVKGKTYKMTCVSMGNPHCVIFVE-DAEAF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G HP F N V + + +R WERG +T ACG+ +CA+ VA Sbjct: 175 PIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCATGVAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 +T+R V V++ GG L +EW + NHVFMTG A+ + G++D Sbjct: 235 TGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEID 277 >gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756] gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756] Length = 290 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 98/277 (35%), Positives = 131/277 (47%), Gaps = 10/277 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 F KMEG+GN +V+D + + + ++ DQI+L+ D R Sbjct: 14 PFTKMEGLGNDFVVLDGVRRNFLLDPETCQRIAHRHYGIGCDQILLVEPASSPDCDFRYR 73 Query: 66 IINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG EV CGNG RC ++S ET G L + + DG+++VDMG P Sbjct: 74 IFNADGGEVGQCGNGARCFALFVRRAGLTDKRSIRVETASGPLELQVHDDGTVTVDMGVP 133 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 LD IP + +H+ L V MGNPHA+ VE D+ +A Sbjct: 134 RLDPADIPFRAPA--AANNYRLDLGQDHIELA---AVGMGNPHALLRVE-DVRGAPVAEI 187 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G LL HP F E N+ + S +L LRTWERG G T ACGS ACA+VVA Sbjct: 188 GPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAVVAGRGWGALR 247 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V V++ GG L I W H+ MTG A+ ++G Sbjct: 248 ERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDGVW 284 >gi|254504487|ref|ZP_05116638.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11] gi|222440558|gb|EEE47237.1| diaminopimelate epimerase [Labrenzia alexandrii DFL-11] Length = 293 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 119/287 (41%), Positives = 164/287 (57%), Gaps = 5/287 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V D R +T D I L FDQ++ + VDAF+RI N Sbjct: 1 MNGLGNDFVVWDAREKPLRLTKDQIAKLGDREHGIGFDQMITVERST-CGVDAFMRIHNS 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-GSISVDMGEPILDWK 128 DG +V +CGN RC+ R L + T ET G+L A + +++VDMG+P L+W Sbjct: 60 DGGQVDACGNATRCIGRLLMEENAKDLVTIETNAGLLHAFDAAGLRNVTVDMGKPRLNWD 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA F IGP++ L P VV+MGNPHAIF+V+ D+ YDLA G LL Sbjct: 120 QIPLAEEFADTRAIELQIGPIDEPILHTPAVVNMGNPHAIFWVK-DVEAYDLARVGPLLE 178 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 +HP+F EG N+S+A + + ++ WERG GLT ACG+AACA VA+ KT R ++ Sbjct: 179 RHPVFPEGANISLAHIFDDNQIRVKVWERGAGLTLACGTAACAVGVAAARDDKTGRKTTI 238 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 + GG + IEW + + HV MTG + E+EG++DI+T W K D Sbjct: 239 HLPGGPIGIEWREGDGHVLMTGLTEVEFEGEVDIETLTWRKTAGGDA 285 >gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311] gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311] Length = 380 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 138/288 (47%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNIT-----SDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R + + + L D ++L + Sbjct: 1 MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEPDPNWVRQLCDRRFGIGGDGLILALPPEHG 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RF +++ ET+ G++V + DG Sbjct: 61 E-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG+P L+ +P + + I V MGNPH + V+ DL Sbjct: 120 IRVDMGKPFLNSDQVPTNLPQGRSGLPQGEIDLQGSTL--QLAAVGMGNPHVVVPVQ-DL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G+ L +F N+ V +L++R WERG G T ACG+ ACA++VA Sbjct: 177 KSIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 + L + +VK+ GG L I W VFMTG A ++G L+ + Sbjct: 237 ASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDGVLNPE 284 >gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205] Length = 341 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 132/285 (46%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMR-----GCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M F+K +G+GN L++D R +T + + L D ++L + Sbjct: 1 MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPP-NG 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DG+E + CGNG+RC+ RF +++ +T+ G +V + DG+ Sbjct: 60 GGELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L IP + + F MGNPH + V+ + Sbjct: 120 IRVDMGAPFLKPSEIPTTLEVGEAGLPSGELEIDGERF--AVAAAGMGNPHVVVPVD-SV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 DL FG+ L HP F N+ V S L +R WERG G T ACG+ ACA++VA Sbjct: 177 DEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 L + R + + GG L I W N VFM G A+ ++G + Sbjct: 237 CHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281 >gi|255320349|ref|ZP_05361533.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82] gi|262379368|ref|ZP_06072524.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164] gi|255302544|gb|EET81777.1| diaminopimelate epimerase [Acinetobacter radioresistens SK82] gi|262298825|gb|EEY86738.1| diaminopimelate epimerase [Acinetobacter radioresistens SH164] Length = 281 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+D+ + I L+ FDQ++++ + D Sbjct: 1 MLEFTKMHGLGNDFMVVDLITQRAYFDTLTIQRLADRHFGIGFDQLLIVEPPDLPTADFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ K +G + V+MG Sbjct: 61 YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKSGIVEPKLGPNGWVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +LIP + D + +N+ L VV+MGNPHA+ V D+ ++A Sbjct: 121 YPKFAPELIPFVTE----ETDPLYALELNNNQLLKIDVVNMGNPHAVTIV-PDVLTAEVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G + H F E VN+ ++ + + + LR +ERG G T ACG+ ACA+ V+ Sbjct: 176 SIGPQVESHVRFPERVNVGFMQILNEKQVRLRVFERGSGETLACGTGACAAAVSGMRRGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 236 LAPEVEVELAGGKLQIGWREGDVVWMTGPTANVYEGRLDLR 276 >gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876] gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876] Length = 277 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ + + AI D ++LI A D F+ Sbjct: 1 MKFTKMEGLGNDYVYVNCLEEQIADPSKTAIEVSDRHFGIGSDGLILIKPSDKA--DFFM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118 + N DGS+ + CGNG+RCV + + T +T+ GI N + + V Sbjct: 59 EMYNADGSQGKMCGNGIRCVGKFVYDYGLTDKTEITVDTLAGIKYLSLNIENKAVKSVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+P LIP+ D + F G + VSMGNPH I +++ D+ + Sbjct: 119 NMGKPEFTPALIPVKADGDVVIDKEFIFGGNAYRI----TCVSMGNPHCITYMD-DIKNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G + +F + VN V ++L +R WERG G T ACG+ ACA VAS Sbjct: 174 EIEKIGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACAVAVASIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 N +V+VK+LGG L I W + + V+M G A + G+ + Sbjct: 234 NGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTGEWN 276 >gi|91791758|ref|YP_561409.1| diaminopimelate epimerase [Shewanella denitrificans OS217] gi|123061318|sp|Q12S90|DAPF_SHEDO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91713760|gb|ABE53686.1| diaminopimelate epimerase [Shewanella denitrificans OS217] Length = 275 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 141/281 (50%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ ++ ++ T G + + RDGS+ V+MG Sbjct: 61 YRIFNADGSEVEQCGNGARCFARFVRNKGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+ D IP + + +SMGNPH + V+ D+ + Sbjct: 121 VPVTDPSNIPFKAK-----KVEKTYLLQTPVQTFLCGAISMGNPHCVIEVD-DIDTVAVD 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL +H FS+GVN+ ++ + + LR +ERG G T ACG+ ACA+ K Sbjct: 175 EIGALLTRHERFSKGVNVGFMQIINPGHIKLRVYERGAGETLACGTGACAAAAIGQLQDK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 +R V V + GG L I+W ++MTG A+ ++G++ + Sbjct: 235 LSRQVRVDLPGGTLHIDWDGEGKPLWMTGPAEHVYDGQIQL 275 >gi|23502782|ref|NP_698909.1| diaminopimelate epimerase [Brucella suis 1330] gi|62290786|ref|YP_222579.1| diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941] gi|82700697|ref|YP_415271.1| diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308] gi|148560145|ref|YP_001259754.1| diaminopimelate epimerase [Brucella ovis ATCC 25840] gi|163843955|ref|YP_001628359.1| diaminopimelate epimerase [Brucella suis ATCC 23445] gi|189025000|ref|YP_001935768.1| diaminopimelate epimerase [Brucella abortus S19] gi|225853370|ref|YP_002733603.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457] gi|237816293|ref|ZP_04595286.1| diaminopimelate epimerase [Brucella abortus str. 2308 A] gi|254696186|ref|ZP_05158014.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|254704943|ref|ZP_05166771.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|254731104|ref|ZP_05189682.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|256112264|ref|ZP_05453185.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|256263148|ref|ZP_05465680.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9] gi|256370334|ref|YP_003107845.1| diaminopimelate epimerase [Brucella microti CCM 4915] gi|260546050|ref|ZP_05821790.1| diaminopimelate epimerase [Brucella abortus NCTC 8038] gi|260758836|ref|ZP_05871184.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|260760560|ref|ZP_05872903.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|261755643|ref|ZP_05999352.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|265993695|ref|ZP_06106252.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|29839333|sp|Q8FYF0|DAPF_BRUSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|75496183|sp|Q57AW6|DAPF_BRUAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123546212|sp|Q2YLR4|DAPF_BRUA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166224246|sp|A5VSQ7|DAPF_BRUO2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082828|sp|B0CIT6|DAPF_BRUSI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807487|sp|B2S885|DAPF_BRUA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767092|sp|C0RFH7|DAPF_BRUMB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|23348803|gb|AAN30824.1| diaminopimelate epimerase [Brucella suis 1330] gi|62196918|gb|AAX75218.1| DapF, diaminopimelate epimerase [Brucella abortus bv. 1 str. 9-941] gi|82616798|emb|CAJ11888.1| Diaminopimelate epimerase [Brucella melitensis biovar Abortus 2308] gi|148371402|gb|ABQ61381.1| diaminopimelate epimerase [Brucella ovis ATCC 25840] gi|163674678|gb|ABY38789.1| diaminopimelate epimerase [Brucella suis ATCC 23445] gi|189020572|gb|ACD73294.1| Diaminopimelate epimerase [Brucella abortus S19] gi|225641735|gb|ACO01649.1| diaminopimelate epimerase [Brucella melitensis ATCC 23457] gi|237788360|gb|EEP62575.1| diaminopimelate epimerase [Brucella abortus str. 2308 A] gi|256000497|gb|ACU48896.1| diaminopimelate epimerase [Brucella microti CCM 4915] gi|260096157|gb|EEW80033.1| diaminopimelate epimerase [Brucella abortus NCTC 8038] gi|260669154|gb|EEX56094.1| diaminopimelate epimerase [Brucella abortus bv. 4 str. 292] gi|260670992|gb|EEX57813.1| diaminopimelate epimerase [Brucella abortus bv. 2 str. 86/8/59] gi|261745396|gb|EEY33322.1| diaminopimelate epimerase [Brucella suis bv. 3 str. 686] gi|262764676|gb|EEZ10597.1| diaminopimelate epimerase [Brucella melitensis bv. 3 str. Ether] gi|263093051|gb|EEZ17201.1| diaminopimelate epimerase [Brucella melitensis bv. 2 str. 63/9] gi|326409933|gb|ADZ66998.1| Diaminopimelate epimerase [Brucella melitensis M28] gi|326539646|gb|ADZ87861.1| diaminopimelate epimerase [Brucella melitensis M5-90] Length = 303 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|256059906|ref|ZP_05450092.1| diaminopimelate epimerase [Brucella neotomae 5K33] gi|261323878|ref|ZP_05963075.1| diaminopimelate epimerase [Brucella neotomae 5K33] gi|261299858|gb|EEY03355.1| diaminopimelate epimerase [Brucella neotomae 5K33] Length = 303 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISV MG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVGMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|161619850|ref|YP_001593737.1| diaminopimelate epimerase [Brucella canis ATCC 23365] gi|260567581|ref|ZP_05838051.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40] gi|189082827|sp|A9M8R8|DAPF_BRUC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|161336661|gb|ABX62966.1| diaminopimelate epimerase [Brucella canis ATCC 23365] gi|260157099|gb|EEW92179.1| diaminopimelate epimerase [Brucella suis bv. 4 str. 40] Length = 303 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|254700573|ref|ZP_05162401.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] gi|261751081|ref|ZP_05994790.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] gi|261740834|gb|EEY28760.1| diaminopimelate epimerase [Brucella suis bv. 5 str. 513] Length = 303 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVD+G P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDIGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|83949967|ref|ZP_00958700.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM] gi|83837866|gb|EAP77162.1| diaminopimelate epimerase [Roseovarius nubinhibens ISM] Length = 277 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 99/275 (36%), Positives = 135/275 (49%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V D R IT ++ DQ+ LI + DA + Sbjct: 9 LPFMKMHGLGNDFVVFDGRARDIAITPALARLVADRHRGIGCDQLALITA--EGPGDAHL 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R L + R + T RG L A++ G SV+MG P Sbjct: 67 TFWNADGSMAAACGNATRCIARHLMDDLGRDALHLTTARGDLAARDMGQGVTSVNMGAPQ 126 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA + D ++ P MGNPH FFVE D LA FG Sbjct: 127 LDWAEIPLAEAMDTLEL----------PIEGGPTATGMGNPHCTFFVE-DAERVALAEFG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP+F E N+ +A + + L +R WERGVG T A GS++CA+ VA+ T R Sbjct: 176 PRYEHHPLFPERTNVQVASLIGPDHLRMRVWERGVGPTLASGSSSCATAVAAARRGLTGR 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V++ + GG L I+W ++ V+MTG +G L Sbjct: 236 CVTITLDGGTLEIDWREDG-VWMTGRTAHVCDGVL 269 >gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656] gi|259595055|sp|C4Z900|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656] Length = 285 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 136/287 (47%), Gaps = 14/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ + + +I D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 RI N DGSE + CGNG+RCV +++ G + +EN+ + V Sbjct: 59 RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPIL IP+ ++ D + + + VSMGNPHA+ FV+ D+ Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD-DV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++L +G L H MF + N + S +R WERG T ACG+ CA+V+A Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281 KT+ V V + GG L IE + NHVFMTG A + + G++DI Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284 >gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1] gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1] Length = 279 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 13/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K G GN ++++ + A+ D ++++ Q A D + Sbjct: 1 MQFTKWHGQGNDFVIVNGFQEKIEDYAQAAVKICDRHFGIGADGLVIVGPSQVA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE + CGN RCV + + T ET+ G + + + ++ V Sbjct: 59 RIFNSDGSEAEMCGNVTRCVARYVYEYGLTDKTKITLETLAGPIKPELIFENGVLRTVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP L IP+ D + ++ + + + VSMGNPH I FV+ D+ Sbjct: 119 DMGEPRLKRAQIPMIGEPD---SEAINVPLIVNDKTYDITCVSMGNPHCIIFVD-DVDEI 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +LA+ G L+ HP F N+ +V + + +R WERG G+T ACG+ A A++VA+ Sbjct: 175 NLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASATLVAAVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 KT R ++ + GG L++EW ++NHV+M+G A + + G+ Sbjct: 235 NGKTGRVATIHLDGGDLVLEWGNDNHVYMSGPAVEVFRGE 274 >gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1] gi|229807510|sp|B0TGR9|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1] Length = 281 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 19/288 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +V++ ++ A+ D ++L+ A D Sbjct: 1 MEFVKMHGLGNDFIVVNAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPSDKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRD-----G 114 RI+N DGSE + CGNG+RC+ R++ R ++ ET+ GI+V + D Sbjct: 59 IRWRILNSDGSEPEMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVT 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMGEP L IP+ +G + +SMGNPH + +V +D Sbjct: 119 GVCVDMGEPRLQRHQIPMVGPEGPAVNQELVVGD----AVVRVTALSMGNPHCLIYV-ND 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + + G + HP F N+ +V + + + +R WERG G T ACG+ ACA+VV Sbjct: 174 IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGTGACATVV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 S T+R V+V + GG L IEW +NN V+MTG A + + G+L + Sbjct: 234 GSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281 >gi|254470941|ref|ZP_05084344.1| diaminopimelate epimerase [Pseudovibrio sp. JE062] gi|211960083|gb|EEA95280.1| diaminopimelate epimerase [Pseudovibrio sp. JE062] Length = 291 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 118/288 (40%), Positives = 165/288 (57%), Gaps = 5/288 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V D R +T I + FDQ++ + + AF+RI N Sbjct: 1 MNGLGNDFVVFDSREKKIVLTPAQIATIGDREKGIGFDQMITVEPA-SSDAYAFMRIHNR 59 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMGEPILDWK 128 DGSEV +CGN RC+ R L S T +T G+L+A + + +SVDMG P L+W Sbjct: 60 DGSEVDACGNATRCIGRLLMGEAGTPSVTIQTNAGLLIAHASDSETLVSVDMGRPRLEWD 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA F IGP++ L +P VV++GNPHAIF+V+ D+ +DL FG LL Sbjct: 120 QIPLAEEFADTRAIELQIGPIDAPVLHSPSVVNVGNPHAIFWVD-DIEAHDLERFGPLLE 178 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HPMF E N+S+A++ + L+ WERGVGLT ACG+AACA+ VA+ + R +V Sbjct: 179 CHPMFPEKANISLAQIIGENEIRLKVWERGVGLTRACGTAACATGVAAARTGRAARKCTV 238 Query: 249 KMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 + GG L IEW ++N H+ MTGE E+EG+L++ T + K D A Sbjct: 239 HLPGGPLGIEWREDNDHIMMTGETAIEFEGELNLDTLAYTKTASGDAA 286 >gi|254694561|ref|ZP_05156389.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] gi|261214885|ref|ZP_05929166.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] gi|260916492|gb|EEX83353.1| diaminopimelate epimerase [Brucella abortus bv. 3 str. Tulya] Length = 303 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLLSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|170724854|ref|YP_001758880.1| diaminopimelate epimerase [Shewanella woodyi ATCC 51908] gi|229813248|sp|B1KQD0|DAPF_SHEWM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169810201|gb|ACA84785.1| Diaminopimelate epimerase [Shewanella woodyi ATCC 51908] Length = 279 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 91/279 (32%), Positives = 141/279 (50%), Gaps = 6/279 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 M+ FAKM G+GN +V+D + + + I L+ FDQ++L+ D +D Sbjct: 1 MIHFAKMHGLGNDFMVVDGVTQNVFFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV+ CGNG RC RF+ ++ + T G + + RDG+++V+MG Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRNKGLTNKHKIKVSTSNGKITLRLERDGNVTVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P+LD IP + + +SMGNPH + VE D+ H ++ Sbjct: 121 VPVLDPSKIPFNAK-RVEKTYLLQTSSSHAMETFLCGAISMGNPHCVLEVE-DIEHAEVE 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G LL ++ F +GVN+ +V + LR +ERG T ACG+ ACA+ K Sbjct: 179 RIGALLTQNERFPKGVNVGFMQVIDAGHIKLRVYERGAAETLACGTGACAAAAVGQLQGK 238 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 N+ V V + GG L I W + N ++MTG A+ ++G++ Sbjct: 239 LNKMVRVDLPGGTLTINWEGEGNPLWMTGPAEHVYDGQI 277 >gi|17986417|ref|NP_539051.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|256045536|ref|ZP_05448419.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|260562846|ref|ZP_05833332.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|265991962|ref|ZP_06104519.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] gi|21362470|sp|Q8YJF0|DAPF_BRUME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|17982011|gb|AAL51315.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|260152862|gb|EEW87954.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. 16M] gi|263003028|gb|EEZ15321.1| diaminopimelate epimerase [Brucella melitensis bv. 1 str. Rev.1] Length = 303 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + + P + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVDPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814] gi|149754558|gb|EDM64489.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814] Length = 282 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 140/284 (49%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ +S D +++I+ + A D + Sbjct: 1 MKFTKMQGLGNDYVYVNCFEEKIENPPAVARYVSDRHFGIGSDGLIMINPSEVA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + + ET+ GI ++ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTQISVETLGGIKYLDLTVEDGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L LIP+ +K+ + + + VSMGNPH + +V+ D+ + Sbjct: 119 DMGKPELKSDLIPIISENEKVIDEPIEVDGQVYHMTG----VSMGNPHTVIYVD-DVKNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H F + +N ++++R WERG G T ACG+ ACA VAS Sbjct: 174 DLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACAVAVASIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + T+ V+VK+LGG L IEW NHVFMTG AK ++G +DI Sbjct: 234 NNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVIDI 277 >gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704] gi|167661119|gb|EDS05249.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704] Length = 277 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + ++ S+ +S D +++I+ + A D + Sbjct: 1 MRFTKMHGLGNDYVYVNCFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPSKVA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + S + ET+ GI K+ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLGGIKYLDLTVKDGKVALVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L + IP+ +++ + +G + + VSMGNPH + +V+ DL Sbjct: 119 DMGKPELKPERIPIVSDEERVVNEPIIVGGMEYRMTG----VSMGNPHVVVYVK-DLEGV 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G H F + VN +V +++++R WERG G T ACG+ ACA VAS Sbjct: 174 KIEHVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACAVAVASIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG LLIEW + V+MTG A ++G++ I Sbjct: 234 NGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277 >gi|152979621|ref|YP_001345250.1| diaminopimelate epimerase [Actinobacillus succinogenes 130Z] gi|171704361|sp|A6VQR8|DAPF_ACTSZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150841344|gb|ABR75315.1| Diaminopimelate epimerase [Actinobacillus succinogenes 130Z] Length = 274 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 96/280 (34%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + I L+ FDQ++L+ D +D Sbjct: 1 MHFSKMHGLGNDFVVVDAVTQNVFFPEEVIKKLADRHRGIGFDQLLLVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG I V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTNKKDIAVSTAKGRMVLTVKDDGQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + VE D+ ++A Sbjct: 121 PIWEPAKIPFNA-----NKFEKNYILRTDIQTVLCGAVSMGNPHCVIQVE-DIKTANVAQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPLLESHERFPERVNAGFMQVIDRHHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V V + GG L+IEW H ++MTG+A ++G + + Sbjct: 235 DSPVQVDLPGGSLIIEWDGEGHPLYMTGDATHIYDGVIKL 274 >gi|169632676|ref|YP_001706412.1| diaminopimelate epimerase [Acinetobacter baumannii SDF] gi|229807501|sp|B0VT30|DAPF_ACIBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169151468|emb|CAP00217.1| diaminopimelate epimerase [Acinetobacter baumannii] Length = 281 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + N VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F E +N +V + + LR +ER VG T ACG+ ACA+ V+ Sbjct: 177 GIGPQVESHKRFPERINAGFMQVIDDKHVRLRVFERCVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 237 LANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 277 >gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB] gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB] Length = 292 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 101/284 (35%), Positives = 151/284 (53%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G+GN + I+ ++ +S D ++LI D + A D + Sbjct: 16 VKFTKMHGLGNDYIYINAVLEDIKNPNEFSKFVSDRHFGIGSDGLVLILDSKIA--DFKM 73 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE + CGN +RCV +F+ +K T ET+ G+ V + +G + V Sbjct: 74 RMFNSDGSEAEMCGNAIRCVGKFVYDNKLTDKKIITIETLAGVKVLEMTVEGEEVVLVKV 133 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEP L+ IP+ + + N F VSMGNPHA+ ++E D+ ++ Sbjct: 134 DMGEPTLEALKIPVISDKYPVINETIDSNGYNFKF----TCVSMGNPHAVTYIE-DVDNF 188 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L G L H F + N+ V + E+L +R WERG G T ACG+ ACA +V+S Sbjct: 189 ELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAGETLACGTGACAVLVSSVL 248 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + R +VK+LGG L++EW + NNHV+MTG A K +EGK+ + Sbjct: 249 NGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKIKL 292 >gi|301155563|emb|CBW15031.1| diaminopimelate epimerase [Haemophilus parainfluenzae T3T1] Length = 274 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+ D+ ++A Sbjct: 121 PIWEPNKIPFTA-----NKFEKNYILRTDVQTVLCGAVSMGNPHCVVQVD-DIETANVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW + ++MTG+A ++G + + Sbjct: 235 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 274 >gi|254713653|ref|ZP_05175464.1| diaminopimelate epimerase [Brucella ceti M644/93/1] gi|254715993|ref|ZP_05177804.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261217761|ref|ZP_05932042.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261321391|ref|ZP_05960588.1| diaminopimelate epimerase [Brucella ceti M644/93/1] gi|260922850|gb|EEX89418.1| diaminopimelate epimerase [Brucella ceti M13/05/1] gi|261294081|gb|EEX97577.1| diaminopimelate epimerase [Brucella ceti M644/93/1] Length = 303 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGKPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158] gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158] Length = 311 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 135/288 (46%), Gaps = 11/288 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D +T + AL+ DQ++++ D Sbjct: 25 LSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALANRHFGIGADQLLVVEKPTVDGADFK 84 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI NCDG EV+ CGNG RC V+F++ R ++S + ++G++ +G + VDMG Sbjct: 85 YRIFNCDGGEVEHCGNGARCFVKFVSDRGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMG 144 Query: 122 EPILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + + S + + R VSMGNPHA+ V+ D Y Sbjct: 145 APVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVD-DAEAYP 203 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L+ +H F + VN ++ S + LR +ER G T ACG+ ACA+V A Sbjct: 204 VLDEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAVAAGIRR 263 Query: 240 HKTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V GG L I W + + M G A+ +EG++D+ Sbjct: 264 GLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDLNA 311 >gi|71892348|ref|YP_278082.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640808|sp|Q491Z7|DAPF_BLOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71796454|gb|AAZ41205.1| diaminopimelate epimerase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 274 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 148/280 (52%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN ++ID + ++TS+ I LS FDQ++++ D ++D Sbjct: 1 MRFTKMNGLGNDFVIIDAVTQNIHLTSENIRYLSDRFYGVGFDQLLIVEPPYDPAIDFHC 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+EV CGNGMRCV +F+ + +++ T ++ D +SV+MG Sbjct: 61 RIYNSDGTEVNQCGNGMRCVAQFVCLKKLTNKRNIHISTRANHIILSIMNDNRVSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D KLIP S + F + VVSMGNPH I VE + + + S Sbjct: 121 PIFDPKLIPFYISQYQKTYILFLP-----TQIILCGVVSMGNPHCIILVEK-IENIQVTS 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ L H F E VN+S ++ + ++ LR +ERGVG T ACG+AACA+V Sbjct: 175 LGSALEDHHCFPERVNVSFMQIINCNNIRLRVYERGVGETQACGTAACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +V+V + GG + + W +N ++MTG ++G +++ Sbjct: 235 YESVNVNLPGGTISVNWKGASNALYMTGSTSYVYDGYINL 274 >gi|306842919|ref|ZP_07475555.1| diaminopimelate epimerase [Brucella sp. BO2] gi|306286942|gb|EFM58462.1| diaminopimelate epimerase [Brucella sp. BO2] Length = 303 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P W Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFGW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAIFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ] gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ] Length = 278 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D + ++ AI + + D ++LI A D + Sbjct: 1 MKFTKMHGAGNDYVYVDCFKETVDNPAETAIKVSNRNFGIGSDGLILIMPTDKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ G + EN+ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKTEITAETGAGILTLQLFPNAENKVERVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L + IP+ VSMGNPH I +V+ D+ + Sbjct: 119 VNMGPPRLSREEIPMNG---TPAAQVVAEELTVLDKTFKITCVSMGNPHCIIYVD-DVDN 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +A++G L+ H +F N+ ++ S + RTWERG G T ACG+ A A VA Sbjct: 175 FPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGASAVCVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T+R + + GG L +EW +N VFMTG A + + G++ + Sbjct: 235 LNNLTDRKILNHLAGGDLELEWVENGPVFMTGPATEVFSGEIAL 278 >gi|163743348|ref|ZP_02150728.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10] gi|161383342|gb|EDQ07731.1| diaminopimelate epimerase [Phaeobacter gallaeciensis 2.10] Length = 281 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 95/275 (34%), Positives = 138/275 (50%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +IT ++ FDQ+ +I DA + Sbjct: 12 LPFMKMHGLGNDFVVVDARDQTWDITPAMAAGIAHRQMGIGFDQLTVI---TKGDEDAHL 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R L + T RG+L+A++ +G SV+MG+P Sbjct: 69 TFYNADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGQPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA D ++ P MGNPH FFV + LA FG Sbjct: 129 LDWQDIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFVG-NAEVIPLAEFG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A V + + L +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 178 ARYEHHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG L I+W ++ V+MTG +G Sbjct: 238 KVQIDLDGGTLWIDWREDG-VWMTGPTMHVADGYF 271 >gi|306843382|ref|ZP_07475983.1| diaminopimelate epimerase [Brucella sp. BO1] gi|306276073|gb|EFM57773.1| diaminopimelate epimerase [Brucella sp. BO1] Length = 300 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 195/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAICLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 RDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTMDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1] Length = 285 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 14/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ + + +I D ++ I D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS--GKADFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 RI N DGSE + CGNG+RCV +++ G + +EN+ + V Sbjct: 59 RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPIL IP+ ++ D + + + VSMGNPHA+ FV+ D+ Sbjct: 119 DMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD-DV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++L +G L H MF + N + S +R WERG T ACG+ CA+V+A Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHVFMTGEAKKEWEGKLDI 281 KT+ V V + GG L IE + NHVFMTG A + + G++DI Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEIDI 284 >gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771] gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771] Length = 277 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 146/284 (51%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K+ G+GN +V++ ++ A D ++L+H + D Sbjct: 1 MHFVKVHGLGNDFVVVNAMTETLPADLPELARRVCHRYFGIGADGLVLLHKSD--AADLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117 ++IIN DGSE + CGN +RCV ++ + K ET+ GI + + + I Sbjct: 59 MQIINSDGSEPEMCGNAIRCVAKYAYEQNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP+ S ++ + ++G VSMGNPH + FV++ + Sbjct: 119 VDMGEPILERAEIPMRGSAGRVLAEDLNVGN----ETFKVTAVSMGNPHCLIFVDEAVS- 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + ++ G + H +F N+ V + + ++ WERG G T ACG+ ACA+VVA+ Sbjct: 174 FPVSLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATVVAAV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V+V + GG LLIEW DNNHV+MTG A++ + G + Sbjct: 234 LNGLTERQVTVHLTGGDLLIEWADNNHVYMTGPAEEVFAGSYKL 277 >gi|254707543|ref|ZP_05169371.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] gi|261315024|ref|ZP_05954221.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] gi|261304050|gb|EEY07547.1| diaminopimelate epimerase [Brucella pinnipedialis M163/99/10] Length = 303 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 145/285 (50%), Positives = 193/285 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DL TWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLHTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|87199423|ref|YP_496680.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM 12444] gi|87135104|gb|ABD25846.1| diaminopimelate epimerase [Novosphingobium aromaticivorans DSM 12444] Length = 275 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 105/276 (38%), Positives = 145/276 (52%), Gaps = 16/276 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R ++T+ AL+ DQ++++ A D + Sbjct: 9 IPFRKMHGLGNDFVVIDAREAAVSMTAARAAALADRRTGIGCDQLIVLEPSDVA--DVRM 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DGSEV++CGN R V L F G L+ E R +SVDMG P Sbjct: 67 RIFNNDGSEVEACGNASRAVGLLLGG------TQFIETLGGLIRSEARPDGVSVDMGAPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IP++ + D ++ PV L NP V++GNPH IFFV+ D DLA G Sbjct: 121 LRWDEIPVSYAMDTLE------MPVGWEDLENPVGVNVGNPHVIFFVD-DADAVDLARLG 173 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ P+F E +N+++A V + L LR WERG GLT ACG+ ACA+ VA+ T R Sbjct: 174 PLIENDPLFPERINVNVASVVGPDHLKLRVWERGAGLTRACGTGACATAVAAIRRKLTGR 233 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + + GG L I W + + MTG A +EG + Sbjct: 234 KVRIDLPGGPLTITWPEGGTIDMTGPATLSFEGAFE 269 >gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502491|sp|Q2JLR0|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 285 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 138/286 (48%), Gaps = 15/286 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + + F K +G+GN +++D R ++ + AL D ++ + Q+ Sbjct: 2 TPRLSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQE-GA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSIS 117 D +R+ N DGSE + CGNG+RC+ RFL + T+ G +V + DG ++ Sbjct: 61 DFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVT 120 Query: 118 VDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG P L K IP L +K+ R + VSMGNPH + F+E++ Sbjct: 121 VDMGIPRLLAKQIPTTLVEPDEKVIRQPLAVAGRE----WRVTAVSMGNPHCVVFLEEEG 176 Query: 176 YHYDL--ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 +L A+ G L HP F E N +V S L LR WERG G T ACG+ ACA + Sbjct: 177 SLEELDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVL 236 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 VA+ + +V++ GG L I W HV+MTG A + G Sbjct: 237 VAAVLEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282 >gi|254708920|ref|ZP_05170731.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|256030446|ref|ZP_05444060.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] gi|256158430|ref|ZP_05456328.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|256253850|ref|ZP_05459386.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261220988|ref|ZP_05935269.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261316419|ref|ZP_05955616.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|265987490|ref|ZP_06100047.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] gi|265996947|ref|ZP_06109504.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|260919572|gb|EEX86225.1| diaminopimelate epimerase [Brucella ceti B1/94] gi|261295642|gb|EEX99138.1| diaminopimelate epimerase [Brucella pinnipedialis B2/94] gi|262551415|gb|EEZ07405.1| diaminopimelate epimerase [Brucella ceti M490/95/1] gi|264659687|gb|EEZ29948.1| diaminopimelate epimerase [Brucella pinnipedialis M292/94/1] Length = 303 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] Length = 279 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 136/282 (48%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ + A D ++LI + D + Sbjct: 3 MKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADFEM 60 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILV----AKENRDGSISV 118 ++ N DGS + CGNG+RCV + + + ET+ GI +E + + V Sbjct: 61 KMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PI + IP+ D + + VSMGNPHA+ +++ D+ + Sbjct: 121 DMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM----TCVSMGNPHAVVYLD-DIQNM 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G HP F VN ARV E++++R WERG G T ACG+ ACA VAS Sbjct: 176 EIEKIGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGACAVAVASMV 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 T V+V++LGG L IEW + N V+MTG A ++G+L Sbjct: 236 NGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277 >gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912] gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Bacillus tusciae DSM 2912] Length = 277 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 139/280 (49%), Gaps = 13/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +V++ + + A N D ++ + A D +R Sbjct: 1 MKFVKMHGLGNDFIVVEGHALPLDPGALARNWCDRHFGIGADGLVFVLPSDRA--DVQMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISVD 119 I N DGSE + CGN +RCV ++ R +R+ ET+ G+ +G ++VD Sbjct: 59 IFNADGSEAEQCGNAVRCVGKYAFERGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEPIL+ IP+A + R F VSMGNPHA+ FV+ D+ D Sbjct: 119 MGEPILEPGRIPVALAEGGTPSGRVEAAGREWAF----TAVSMGNPHAVIFVD-DVEGTD 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + + +F VN+ + +R WERG G T ACG+ ACA+VVA Sbjct: 174 VRGVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAVVAGALE 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ R V V + GG L IEW ++ V+MTG A + + G++ Sbjct: 234 GRSGRKVRVHLPGGTLKIEWAEDGRVYMTGPAVEVFRGEI 273 >gi|253997559|ref|YP_003049623.1| diaminopimelate epimerase [Methylotenera mobilis JLW8] gi|253984238|gb|ACT49096.1| diaminopimelate epimerase [Methylotenera mobilis JLW8] Length = 279 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++M+ F KM+G GN +VID ++++D I L+ FDQ++L+ A D Sbjct: 2 ANMIKFTKMQGAGNDFMVIDGVTQSISLSADTIKKLANRQFGIGFDQLLLVESS--AVAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DGSEV CGNG RC VRF+ + +++ + ET GI+ K G ++V+ Sbjct: 60 FKYRIFNADGSEVSQCGNGARCFVRFVVDQGLTQQREISVETASGIITPKLEDHGLVTVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P IP + H + N VSMGNPHA+ V+ D+ Sbjct: 120 MGAPRFKPDAIPFVAA-----SAATHYALEVNDQAFNIAAVSMGNPHAVLTVD-DVETAP 173 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + HP F E VN+ +V + LR +ERG G T ACG+ ACA+ V Sbjct: 174 VLPLGSAIEHHPRFPERVNVGFMQVMDEHHIKLRVFERGSGETLACGTGACAAAVTGIQS 233 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 + + V V GG L I W + V MTG A + G++D+ Sbjct: 234 GRLSSPVKVSARGGELSIAWQGADTPVMMTGPAVTVFTGEIDLDA 278 >gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM 10507] gi|225037593|gb|EEG47839.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM 10507] Length = 278 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + S+ +S D ++LI Q A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPSQIA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGS+ CGNG+RCV +++ T + + + + V Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYVYDYGIVPKTTLRIATKSGIKELNLTVENGKVSLVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL+ IP+ + + + F VSMGNPHA+ +++ D+ + Sbjct: 119 NMGSPILEASKIPVVSDQSQAVNQPIKVNGHTYYFTG----VSMGNPHAVVYLD-DVDNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G KHP+F + VN +V ++L +R WERG G T ACG+ ACA V+S Sbjct: 174 DIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGACAVAVSSIL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + T V+VK+LGG L I W N V+MTG A ++G++ + Sbjct: 234 NNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITLP 278 >gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii] gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii] Length = 298 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 96/289 (33%), Positives = 132/289 (45%), Gaps = 14/289 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDA 58 +Q +DF K G+GN +++D R DAI + D ++ Sbjct: 7 LQQRTLDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ- 65 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RF+ +S+ T+ G ++ + DG Sbjct: 66 GCDYSMRIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQ 125 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 ++VDMG P L +P + D V VSMGNPH + F E D Sbjct: 126 VAVDMGPPTLKGAEVPTKLPVN-ADGAVVKQPLVVDGKTWLVTCVSMGNPHCVTFGEQDA 184 Query: 175 -----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + L G L H +F N +V S L +R WERG G T ACG+ A Sbjct: 185 KGDLEVNKLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGA 244 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 CA VVA+ + R V + GG L IEW + NNHV+MTG AK + G Sbjct: 245 CAVVVAAVLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293 >gi|254512917|ref|ZP_05124983.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11] gi|221532916|gb|EEE35911.1| diaminopimelate epimerase [Rhodobacteraceae bacterium KLH11] Length = 280 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 16/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +++D R IT + FDQ+ +I DA + Sbjct: 12 LPFMKMHGLGNDFVIVDARAHTVPITPAMARGIGHRRFGVGFDQLAVIE---QGQADAHL 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + + + T RG L+A++ DG S++MG+P Sbjct: 69 VFYNADGSTSAACGNATRCIARFLMNESGKSNLALTTERGTLLARDAGDGLTSINMGQPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA + ++ P MGNPH FFV D L FG Sbjct: 129 LDWQEIPLAEDVNTLEL----------PIEGGPTATGMGNPHCTFFV-VDAEAIPLEEFG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A+VT + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 178 ARYEYHPLYPERTNVQVAQVTGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V + + GG + I+W D+ V+MTG G L + Sbjct: 238 EVQIDLDGGTIWIDWRDDG-VWMTGPTCHVLSGTLTPE 274 >gi|254418556|ref|ZP_05032280.1| diaminopimelate epimerase [Brevundimonas sp. BAL3] gi|196184733|gb|EDX79709.1| diaminopimelate epimerase [Brevundimonas sp. BAL3] Length = 279 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 109/275 (39%), Positives = 146/275 (53%), Gaps = 6/275 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID T D I AL+ FDQ++ I + A DAF+R Sbjct: 7 PFIKMNGAGNDFIVIDALETPFRPTEDQIRALADRASGEGFDQLIAIEPSETA--DAFMR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DGS V++CGN +RCV L T +T G A D ++VDMG P L Sbjct: 65 VWNADGSMVETCGNALRCVGWLLMEAGGGDRVTIDTAAGPTTATRAGDRRVTVDMGRPRL 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW +PLA D + +GP++ L P VSMGNPH +FF + + G+ Sbjct: 125 DWTQVPLAEEMDTRGIE-LQVGPIDAPLLHTPGAVSMGNPHVVFFTDRQ-DDGFVTGSGS 182 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F EGVN+ A V + + LR WERG GLT ACG+ ACA+ VA+ T+R Sbjct: 183 LVEHHPLFPEGVNVGFAHVLDRDHIRLRVWERGAGLTKACGTGACAAQVAAARRGLTDRK 242 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V + GG L+I+W +HV MTG + E G L Sbjct: 243 ATVVVDGGELVIDWDPATDHVLMTGPVEIERTGAL 277 >gi|56695194|ref|YP_165542.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] gi|56676931|gb|AAV93597.1| diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] Length = 269 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 134/278 (48%), Gaps = 16/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R IT ++ FDQ+ +I DA + Sbjct: 1 MTFMKMHGLGNDFVVVDARLHPVRITGALARGIAHRHLGVGFDQLAVIEP---GKGDAHL 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R L + T RG L A++ DG SV+MG P Sbjct: 58 VFYNADGSTSAACGNATRCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQ 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA D ++ P MGNPH FFV D LA FG Sbjct: 118 LLWHEIPLAEEMDTLEL----------PIEGGPTATGMGNPHCTFFV-ADAEAIPLAEFG 166 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + NL +A++T + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 167 ARYEHHPLYPQRTNLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGR 226 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V + + GG + I+W ++ V+MTG + L + Sbjct: 227 KVQIDLDGGTIWIDWREDG-VWMTGPTMHVFSATLTPE 263 >gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59797812|sp|Q72W63|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 281 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + ID +T + I +S D ++ I + + D + Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 + N DGS + CGNG+RCV +++ K+ ET GIL N+ +S Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P+L IP+ ++ D+ +L VSMGNPH + FV+ D Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNL---KFTAVSMGNPHCVIFVD-DSDE 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ +H +F + VN+ + + L RTWERG G T ACG+ ACA +VA Sbjct: 178 FPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGN 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I Sbjct: 238 LTGRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281 >gi|303242859|ref|ZP_07329323.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2] gi|302589605|gb|EFL59389.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2] Length = 277 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ + S+ +S D ++LI Q D + Sbjct: 1 MKFTKMQGLGNDYIYVNCFTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPSQM--CDFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRG----ILVAKENRDGSISV 118 R+ N DGSE + CGN +RCV +F+ + ET+ G + K+N+ + V Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKFVYDNGMTQKSVIKVETLAGIKVLDMTVKDNKVELVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL+ IP+ + + I VSMGNPHA+ +V+ D+ + Sbjct: 119 DMGEPILEPAKIPVDSNKELFVSQPVVIDGREFK----VTCVSMGNPHAVTYVD-DVEKF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G + + ++ + +N +V ++L +R WERG G T ACG+ ACA +V+S Sbjct: 174 PLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGTGACAVLVSSVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +NR V VK+LGG L+IEW++ +NHV+MTG A K ++G +D+ Sbjct: 234 NDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDIDV 277 >gi|254488147|ref|ZP_05101352.1| diaminopimelate epimerase [Roseobacter sp. GAI101] gi|214045016|gb|EEB85654.1| diaminopimelate epimerase [Roseobacter sp. GAI101] Length = 298 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 148/301 (49%), Gaps = 30/301 (9%) Query: 1 MQSSM---VDFAKMEGIGNKILVIDMRGC--------HDNITSDAINAL-STDDNTHFDQ 48 M S M + F KM G+GN +V+D R +T A+ FDQ Sbjct: 14 MYSDMTNGLPFMKMHGLGNDFVVLDARDSALLGKDGDSLQVTPALAQAVGHRHFGVGFDQ 73 Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA 108 + +I + DA + N DGS +CGN RC+ RFL + S T RG L A Sbjct: 74 LAVI---TTGTGDAHLTFYNSDGSLSAACGNATRCIARFLMDETGKSSLHLTTDRGDLAA 130 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 ++ D +V+MG+P LDW+ IPLA + + ++ P MGNPH Sbjct: 131 QDMGDRLTAVNMGQPQLDWQDIPLAHAMETLEL----------PIDGAPTATGMGNPHCT 180 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 FFV DL DL FG + HP++ E N+ IA++ + + +R WERGVG+T A GS+ Sbjct: 181 FFV-ADLAAIDLERFGPGIEHHPLYPERTNVQIAQIIGPDHIRMRVWERGVGITLASGSS 239 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 +CA+ VA+ T R V + + GG L I+W ++ V+MTG + G L T +++ Sbjct: 240 SCATAVAAARRGLTGRKVRIDLDGGTLHIDWREDG-VWMTGPTAHVFSGTL---TREFLD 295 Query: 289 K 289 Sbjct: 296 G 296 >gi|110635719|ref|YP_675927.1| diaminopimelate epimerase [Mesorhizobium sp. BNC1] gi|122965555|sp|Q11CW3|DAPF_MESSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110286703|gb|ABG64762.1| diaminopimelate epimerase [Chelativorans sp. BNC1] Length = 293 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 149/288 (51%), Positives = 190/288 (65%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 FAKM G+GN I+V DMRG D + +A L++D THFDQIM IHD + + +I I Sbjct: 6 QFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 IN DGS Q+CGNGMRCVV+ L + R SFTFETI G+L A+E+ +G ISVDMG+P Sbjct: 66 INSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFG 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F + +GP++ L +P V SMGNPHAIF+VEDD Y YDL FG + Sbjct: 126 WQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLERFGPM 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N++IARV S E L +RTWERG GLT ACGSAACA+ V++ +T R V Sbjct: 186 LENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRTGRGV 245 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 V + GG L I W D++HV MTG A+ E+ G+ D TG W ++ E Sbjct: 246 KVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA 293 >gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1] gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1] Length = 290 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 132/281 (46%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN ++++ ++ L D + L+ + A+ + Sbjct: 1 MRFTKMHGLGNDFVIVEDFDLGLTNYAELAMGLCNRNFGIGADGLALLQPSEQAA--FRV 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 RI N DGSE + CGN +RC ++L + + + S+ V Sbjct: 59 RIFNPDGSEAELCGNLLRCAGKYLYEKGHTGETVIPVEMYDKIKVLRLAVTDGVVQSVEV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPIL+ L+P+A + + + VSMGNPH + FV+ + Sbjct: 119 DMGEPILESDLVPVAGKRRQAVNEEVTASGEKFVM----TAVSMGNPHCVIFVD-ETAAV 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L ++G L HP F + N+ V S + R WERG G T ACGS ACA +VA Sbjct: 174 PLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGATLACGSGACAVLVAGVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K NR ++ + GG L IEW D+NHV+MTG A + + G+L Sbjct: 234 SDKLNRKATLHLPGGSLEIEWRDDNHVYMTGPAAEVFRGEL 274 >gi|254476623|ref|ZP_05090009.1| diaminopimelate epimerase [Ruegeria sp. R11] gi|214030866|gb|EEB71701.1| diaminopimelate epimerase [Ruegeria sp. R11] Length = 281 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 142/285 (49%), Gaps = 19/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +IT ++ FDQ+ +I DA + Sbjct: 12 LPFMKMHGLGNDFVVVDARDQSWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHL 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R+L T RG+L+A++ +G SV+MG+P Sbjct: 69 TFYNADGSTSGACGNATRCIARYLLDESGTSKLRLTTDRGLLLAEDVGNGLTSVNMGQPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW+ IPLA D ++ P MGNPH FFVE + LA FG Sbjct: 129 LDWQDIPLAEDVDTLEL----------PIEGTPTATGMGNPHCTFFVE-NAEVIPLAEFG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A V + L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 178 ARYEHHPLYPERTNVQVAHVVGPDHLRMRVWERGVGITLASGSSSCATAVAAVRRGLTGH 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + + GG L ++W D+ V+MTG +G T ++++ Sbjct: 238 KVRIDLDGGTLWVDWRDDG-VWMTGPTMHVADGHF---TREFLES 278 >gi|89067276|ref|ZP_01154789.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516] gi|89046845|gb|EAR52899.1| diaminopimelate epimerase [Oceanicola granulosus HTCC2516] Length = 284 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 100/275 (36%), Positives = 141/275 (51%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R H +D I A++ +DQ+ +I A DA + Sbjct: 23 LPFMKMHGLGNDFVVLDRRDGHAMPGADVIRAMADRRRGVGYDQLAVIEGA--ADADARL 80 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ +CGN RC+ L R T RG L A+ + G ++V+MG P Sbjct: 81 TFWNSDGSQSAACGNATRCIAAHLMDETGRDDLALVTARGRLAAERHG-GVVAVNMGAPS 139 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 DW+ +PLAR D + +P MGNPH FFVE D DLASFG Sbjct: 140 TDWQGVPLAREVDTLHL----------PIPGDPVATGMGNPHCTFFVE-DAESVDLASFG 188 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP+F E N+ +A+V + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 189 AEHEHHPLFPERTNVQLAQVLDRARIRMRVWERGVGITEASGSSSCATAVAAARRGLTER 248 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V + GG L I+W D+ V+M G ++G Sbjct: 249 RVTVLLDGGELEIDWRDDG-VWMAGPTAHVFDGVW 282 >gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] Length = 277 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ H S+ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGS+ CGNGMRCV +++ + + + + V Sbjct: 59 EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MGEP+L+ K IP+ +K+ F++G + VSMGNPHA+ +V+ ++ + Sbjct: 119 NMGEPVLETKAIPMIYEGEKVISQPFNVGQDIYEI----TAVSMGNPHAVVYVD-NVKNL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G KH F E VN RV ++++R WERG G T ACG+ ACA VAS Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG L I W N V+MTG A+ +EG+++I Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277 >gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629] Length = 285 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 135/287 (47%), Gaps = 14/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +++ + +I D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNLFEEKLGDPARVSIYVSDRHFGIGSDGLITIGPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 RI N DGSE + CGNG+RCV +++ G + +EN+ + V Sbjct: 59 RIYNADGSEAEMCGNGIRCVAKYVYDHKLTDKTEISVETGAGIKYLTLYVEENKVSQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDL 175 DMGEPIL IP+ ++ D + + + VSMGNPHA+ FV+ D+ Sbjct: 119 DMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD-DV 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++L +G L H MF + N + S +R WERG T ACG+ CA+V+A Sbjct: 178 AGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGTGTCATVMA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 KT+ V V + GG L IE+ NHVFMTG A + + G++DI Sbjct: 238 CILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEIDI 284 >gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2] gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2] Length = 278 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 146/285 (51%), Gaps = 16/285 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN +VI N+ A N + D ++ I + A D Sbjct: 1 MMKFTKMHGLGNDFIVIAGEQQLPGNVAELAKNQCNRFFGIGADGLVYILPSEVA--DFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSI 116 +RIIN DGSE + CGN +RC +++ ++ T ET+ L + + + Sbjct: 59 MRIINSDGSEAEQCGNAIRCAAKYIYDNGLTDKEELTIETLGAGAQTVQLEVADGKVQQV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG PIL+ +P D++ + F VSMGNPH + +V+ D Sbjct: 119 RVDMGAPILNGLQVPTTVDEDRVIEHPIEVDGREFRF----TAVSMGNPHCVIYVD-DAA 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++DLA++G L HPMF +N+ V S E ++R WERG G T ACG+ ACA+VV+S Sbjct: 174 NFDLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACATVVSS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T+R V + GG L IEW++ +NHV+MTG A + + G+ Sbjct: 234 VLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGEWK 278 >gi|255262180|ref|ZP_05341522.1| diaminopimelate epimerase [Thalassiobium sp. R2A62] gi|255104515|gb|EET47189.1| diaminopimelate epimerase [Thalassiobium sp. R2A62] Length = 271 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 140/277 (50%), Gaps = 15/277 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D RG + S A+ FDQ+ ++ D + Sbjct: 9 LPFMKMHGLGNDFVVVDERGITPRVDSTIAKAIGDRHRGVGFDQLAVL--SNTDDADVQL 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ L + ++ T +T RG+L A + G SV+M P+ Sbjct: 67 TFYNADGSTAGACGNATRCIANHLLEQTSTRAMTLQTERGLLSAMSDVAGVTSVNMLHPL 126 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLA + D + P MGNPH FFV+ D+ L +FG Sbjct: 127 LDWAYVPLAENVDTLAL----------PIDGGPTATGMGNPHCTFFVD-DVEAVALETFG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + HP+F E N+ +A++ + + +R WERGVG+T + GS++CA+ VA+ T Sbjct: 176 ARMEHHPLFPERTNVQVAQIIGPDHIRMRVWERGVGITLSSGSSSCATAVAAARRGLTGC 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +V + + GG L I+W D+ V+MTG ++G + Sbjct: 236 SVQIDLDGGTLHIDWRDDG-VWMTGPTAHVFDGVWHL 271 >gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] Length = 277 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ H S+ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFQEHIENPSEVSRRISDRHFGIGSDGLILIKSSEKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGS+ CGNGMRCV +++ + + + + V Sbjct: 59 EMYNADGSQGAMCGNGMRCVGKYVYDYGLTDKTRISVDTKSGIKYLDLTVENKKVKQVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MGEP+L+ K IP+ +K+ F++G + VSMGNPHA+ +V+ ++ Sbjct: 119 NMGEPVLETKAIPMIYDGEKVISQPFNVGQDIYEI----TAVSMGNPHAVVYVD-NVKSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G KH F E VN RV ++++R WERG G T ACG+ ACA VAS Sbjct: 174 PLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACAVAVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+V++LGG L I W N V+MTG A+ +EG+++I Sbjct: 234 NGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEIEI 277 >gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392] gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392] Length = 285 Score = 218 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 139/280 (49%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 12 MQFSKMHGLGNDFVVVDAVTQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPDLDFHY 71 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T +G +V DG I V+MGE Sbjct: 72 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIAVSTQKGKMVLTVKEDGQIRVNMGE 131 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+ ++ ++A Sbjct: 132 PIWEPNKIPFTA-----NKFEKNYILRTDVQTVLCGAVSMGNPHCVVQVD-NIETANVAE 185 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN +V + + LR +ERG G T ACGS ACA+ Sbjct: 186 LGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGACAAAAVGIMQGLL 245 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG LLIEW + ++MTG+A ++G + + Sbjct: 246 DNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285 >gi|53804981|ref|YP_113353.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath] gi|53758742|gb|AAU93033.1| diaminopimelate epimerase [Methylococcus capsulatus str. Bath] Length = 275 Score = 218 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 93/279 (33%), Positives = 129/279 (46%), Gaps = 10/279 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F KM+G+GN +VID N+ A+ L+ DQI+L+ VD Sbjct: 1 MLRFTKMQGLGNDFVVIDAIHQTVNLDEAALRRLADRHYGIGCDQILLVEPPASDEVDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DG EV CGNG RC RF+ + + R ET G +V G + V+MG Sbjct: 61 YRIFNADGGEVSQCGNGARCFARFVREKGLIDRDEIRVETAAGRMVLWLEAGGEVRVEMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +PL DR+R VS+GNPHA+ V D+ +A Sbjct: 121 VPRHAPAEVPLLA-----DRERSVYTVNVEGVDWQFGAVSVGNPHAVITV-ADVDEAPVA 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L +H +F E N+ +V L LR +ERG G T ACGS ACA+ V Sbjct: 175 RVGTVLERHELFPERANIGFMQVLDLHHARLRVYERGTGETLACGSGACAAAVVGILQGT 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 V + + GG L I W V+++G A +EG++ Sbjct: 235 LESPVRIDLPGGTLRIGWQGRGTPVYLSGPAVTVFEGRM 273 >gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787] gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787] Length = 289 Score = 218 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 142/284 (50%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ + +S D +++I+ A D + Sbjct: 13 MKFTKMQGLGNDYVYVNCFKETIENPPEMAKKVSNRNFGIGSDGLIMINPSDVA--DFEM 70 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + +++ + ET+ GI ++ + + V Sbjct: 71 EMYNADGSRSEMCGNGIRCVGKYVYDYGLTEKEHISVETLAGIKYLDLTVEDGKVKLVKV 130 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L + IP+ +++ + ++ + VSMGNPHA+ +VE D+ Sbjct: 131 DMGSPELVPENIPIVADGNRVIDEPINVNGTEYRMTG----VSMGNPHAVVYVE-DVKGL 185 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ + G H F VN +V ++++R WERG G T ACG+ ACA VA Sbjct: 186 DIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVAVACIL 245 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG L IEW + + ++MTG A+ ++G++++ Sbjct: 246 NGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289 >gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098] gi|212674051|gb|EEB34534.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098] Length = 306 Score = 218 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 126/300 (42%), Gaps = 18/300 (6%) Query: 2 QSSM--VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHD 54 +++M + F KMEG GN + +D + I L+ D ++LI Sbjct: 5 RTTMRKIAFTKMEGCGNDYVYLDGVSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILP 64 Query: 55 FQDAS-VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE- 110 D +R+ N DGSE + CGN RCV RF ET+ GI + + Sbjct: 65 PTSPDSADLRMRMFNADGSEAEMCGNASRCVGRFAWEHALTDRPVIRLETLAGIKLLQRV 124 Query: 111 ----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP-VNHLFLRNPFVVSMGNP 165 + VDMG P L + IP+ P VSMGNP Sbjct: 125 DDAGGCPSRVCVDMGTPELARQRIPVCPDTASDPESPCIGQPIRVLDREWTMTCVSMGNP 184 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV+ D+ DL G HP F N ++ + +R WERG G T AC Sbjct: 185 HAVVFVD-DVDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLAC 243 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 G+ ACA VA T R V+V++ GG L I W + H+ MTG A+ + G+ G Sbjct: 244 GTGACAVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSGEYSPAQG 303 >gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4] gi|22256735|sp|Q8R9S4|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4] Length = 274 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + A+ D ++++ A D +R Sbjct: 1 MRFTKMHGLGNDFIVIEAVEG-VDYSELAVKLCDRHFGIGADGLLVVEPSHIA--DIKMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ + ++ T ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYEKGIVSKQKMTVETLAGVIMPELFVENGKIKSVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + V +G PH I FV Sbjct: 118 MGSPIFESSKIPVKSEKQKFIDEPVKIDGKTYRLSS----VRVGVPHTILFVS-SFEESF 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F EG N+ +V E++ +RTWERGVGLT ACGS A AS V S L Sbjct: 173 MKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASAVVSSLL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T R+V+V G LL+EW ++N ++++GE ++ + G+++I Sbjct: 233 GRTRRSVNVHFKAGVLLVEWKEDNSIYLSGEVEEVFRGEIEI 274 >gi|99082649|ref|YP_614803.1| diaminopimelate epimerase [Ruegeria sp. TM1040] gi|99038929|gb|ABF65541.1| diaminopimelate epimerase [Ruegeria sp. TM1040] Length = 275 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 98/277 (35%), Positives = 132/277 (47%), Gaps = 14/277 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-DASVDA 62 M+ F KM G+GN +VID R IT ++ FDQ+ +I DA Sbjct: 1 MLPFMKMHGLGNDFVVIDARESDIEITPAMAKGIAHRQMGLGFDQLAVIATADASTEADA 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ R+L + + S T RG+L+A + +G SV+MG Sbjct: 61 HLVFYNADGSTSGACGNATRCIARYLMDQSNKPSLRLTTDRGVLIATDAGEGLTSVNMGA 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IP + + P MGNPH FFVE D LA Sbjct: 121 PQLSWDEIP----------LAEELETLELPIEGAPSATGMGNPHCTFFVE-DAEVIPLAE 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG HP++ E N+ IA V L +R WERGVG+T A GS++CA+ VA+ T Sbjct: 170 FGPRYEHHPLYPERTNVQIAHVVGPNHLRMRVWERGVGITLASGSSSCATAVAAARKGLT 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V + + GG L I+W D+ V+MTG G Sbjct: 230 GRKVQIDLDGGTLWIDWRDDG-VWMTGPTMHVANGSF 265 >gi|294668983|ref|ZP_06734069.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308975|gb|EFE50218.1| diaminopimelate epimerase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 282 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 133/279 (47%), Gaps = 7/279 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID + S I A + FDQ++L+ D Sbjct: 4 LKFTKMHGLGNDFIVIDGISSPFDPASAPIAAWADRHTGIGFDQLLLVERPTSEQADFRY 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + ++ ET RGI+V K G ++V+MG+ Sbjct: 64 RIFNADGGEVEQCGNGARCFARFVADKGLSGKQEIRVETARGIIVPKLAEHGLVTVNMGQ 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + + V+MGNPHA+ VE + +A Sbjct: 124 PRFRPSEIPF-LPLENTSGETLQYDVRLDGGNVTVGCVNMGNPHAVLTVE-NTESAAVAE 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP F E VN+ ++ + + LR +ERGVG T ACG+ ACA+ V Sbjct: 182 LGAQIEPHPQFPEKVNVGFMQILNRRHIKLRVFERGVGETRACGTGACAAAVYGVRAGWL 241 Query: 243 NR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V + GG LLI W VFMTG A+ +EG+L Sbjct: 242 DEGEDIRVSLPGGDLLIAWQSGGDVFMTGPAETVFEGEL 280 >gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E] gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E] Length = 286 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 144/282 (51%), Gaps = 9/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+K + GN ++ + +S+ + L D ++ + DA D + Sbjct: 1 MYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGVIYVLPSLDA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE + CGNG+RC +F + + SF+ ET GIL + ++G++ VDMG Sbjct: 59 RIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMGI 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IP+ K+ D + R VSMGNPH + F + + ++ + Sbjct: 119 PNLNSDDIPVKGFSKKVIIDELLNISHENKAYR-INCVSMGNPHCVIFTDK-IDGINIEA 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+++ H F + N+ + S L ++ WERG G+T ACG+ +CA+VVA+ + Sbjct: 177 DGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAAILNNLV 236 Query: 243 NRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 N V + GG L I W + NHVFMTG A+K ++G +++ Sbjct: 237 NNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 278 >gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965] gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965] Length = 290 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 145/283 (51%), Gaps = 9/283 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++ F+K + GN ++ + +S+ + L D I+ + DA D Sbjct: 4 LMYFSKWQACGNDFIIFNSFKNKFIFSSEFVKKLCNRNFGIGADGIIYVLPSLDA--DFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGNG+RC +F + + SF+ ET GIL + ++G++ VDMG Sbjct: 62 MRIFNSDGSEAEMCGNGIRCFAKFVVNQKLINKSSFSVETGAGILFPEILKNGNVCVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ IP+ K+ D + R VSMGNPH + F + + ++ Sbjct: 122 IPNLNSDDIPVKGFSKKVVIDELLNISHENTAYR-INCVSMGNPHCVIFTDK-IDSINIE 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G+++ H F + N+ + S L ++ WERG G+T ACG+ +CA+VVA+ + Sbjct: 180 ADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVAATLNNL 239 Query: 242 TNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 N V + GG L I W + NHVFMTG A+K ++G +++ Sbjct: 240 VNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNIEVD 282 >gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 277 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ + A D ++LI + D + Sbjct: 1 MKFTKMQGLGNDYVYVNCLKEKVESPSEMARRVSDRHFGVGSDGLILICPSE--CADFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILV----AKENRDGSISV 118 ++ N DGS + CGNG+RCV + + + ET+ GI +E + + V Sbjct: 59 KMYNADGSRGEMCGNGIRCVGKYVYDYGLTDQTEISVETLGGIKHLSLTVEEGKVALVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PI + IP+ D + + +SMGNPHA+ +++ D+ + Sbjct: 119 DMGSPIFVPEQIPVKVEGDHAVNVPISVDGDEYRM----TCISMGNPHAVVYLD-DIQNM 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G HP F VN A V E++++R WERG G T ACG+ ACA VAS Sbjct: 174 EIEKIGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGACAVAVASMV 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 T V+V++LGG L IEW + N V+MTG A ++G+L Sbjct: 234 NGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275 >gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662] gi|167654139|gb|EDR98268.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662] Length = 285 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 135/288 (46%), Gaps = 14/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN + ++ ++ +S D ++ IH A Sbjct: 4 RSDSMKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA-- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDG 114 D + + N DG+E CGNG+RC+ +++ T + ++ + Sbjct: 62 DFRMAMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVT 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDM P+L+ IP+ +K D+ I VSMGNPH + FV+ Sbjct: 122 WVNVDMEAPVLEADKIPVIYDEEKKVIDKPVIVD---GREYRITCVSMGNPHGVVFVD-S 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + D+ G + HPMF + VN +V ++ +R WERG G T ACG+ ACAS Sbjct: 178 VDDLDIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAY 237 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 AS KT V V +LGG L IE+ + H +FM G A K ++G++D+ Sbjct: 238 ASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285 >gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917] gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917] Length = 360 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 83/285 (29%), Positives = 125/285 (43%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++++ R + L D +++ A Sbjct: 1 MLQFSKYQGLGNDFILLEGRSGQLSAAICEPDPAWVRRLCDRRFGIGADGLIVALPPAAA 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RFL +++ ET G+++ DG Sbjct: 61 G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTLLADGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P L + +P A G V R + + DDL Sbjct: 120 IQVDMGRPFLQPEQVPTALPVGAAG---LPQGEVELDGRRLALAAAGMGNPHVVVTVDDL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +G L P+F N+ +V S L +R WERG G T ACG+ ACA++VA Sbjct: 177 DQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L V + GG L I W D + + MTG A+ ++G L Sbjct: 237 AHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVL 281 >gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18] gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18] Length = 276 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 128/282 (45%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + AI + + D ++LI + A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEETVQDPAKVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSIS 117 R+ N DGSE + CGNG+RCV ++ G + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKEITAETGAGILTLQLFTGQDSKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L K IP+ + D+ + + + SMGNPH + FV+ D+ Sbjct: 119 VNMGPPRLTRKEIPMLGNPDEKVINEPLNILHS---TFHITCASMGNPHCVIFVD-DVDK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G ++ H MF N+ +V S + RTWERG G T ACG+ + A A Sbjct: 175 FPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAVTAACV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T + + + GG L +EW ++ +++MTG A + + G++ Sbjct: 235 LNGLTGKKILNHLSGGDLEMEWSEDGNIYMTGPAVEVFSGEI 276 >gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC 27755] gi|166029593|gb|EDR48350.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC 27755] Length = 288 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 146/285 (51%), Gaps = 12/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ + + +S D +++I+ + A D + Sbjct: 7 MKFTKMQGLGNDYVYVNCFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPSKVA--DFEM 64 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + + ET+ GI K+ + + V Sbjct: 65 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTHISVETLGGIKYLDLTVKDGKVALVRV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP LD + IP+ + DR + + VSMGNPH + +++ ++ Sbjct: 125 DMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMTGVSMGNPHDVVYID-NVQG 183 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G H F + +N ARV +++++R WERG G T ACG+ ACA VAS Sbjct: 184 LDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGACAVAVASI 243 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T R V +++LGG L IEW+ ++NHV+MTG A ++G++++ Sbjct: 244 LNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288 >gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50] gi|156865059|gb|EDO58490.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50] Length = 278 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 146/283 (51%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + I+ +N AI D ++LI A D + Sbjct: 1 MKFTKMEGLGNDYVYINCFSEKVENPEKLAIAMSDRHFGVGSDGVILIKPSDKA--DFTM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG----ILVAKENRDGSISV 118 + N DGS + CGNG+RCV + + S + ET+ G V K+ + ++V Sbjct: 59 DMYNADGSRSEMCGNGIRCVGKYVYDYGLTDKTSISVETLAGIKYLDFVIKDGKVDMVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL +P+ +++ ++ + V++ VSMGNPHA+ FV+ D H+ Sbjct: 119 DMGAPILKADQVPVRSDKEQVIDEKITVAGVDYHM----TCVSMGNPHAVMFVD-DTEHF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L H +F VN +V ++ +R WERG G T ACG+ ACA+ VA Sbjct: 174 PLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACATAVACVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 KT+ V+VK+LGG L+I + +NN V+MTG A+ ++G+ D Sbjct: 234 NGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGETD 276 >gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421] gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421] Length = 283 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 130/278 (46%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K EG+GN ++ID R + + +A D ++ + + D Sbjct: 8 LSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLL-SAETGADFR 66 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE Q CGNG+RC+ F + ET G+L DG + VDM Sbjct: 67 MRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRVDM 126 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L IP + D+ V+MGNPHA+ FV+ +L DL Sbjct: 127 GPPHLLADEIPTTLA--PADQKAVAASIPVGGVDWRVTCVNMGNPHAVVFVD-ELATVDL 183 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG L + F E VN A V S L ++ WERG G T ACG+ ACA +VA+ Sbjct: 184 HRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAVLVAAVLNG 243 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 ++ +V++ GG + I W NH+ MTG A+K + G Sbjct: 244 LSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSG 281 >gi|149204847|ref|ZP_01881809.1| diaminopimelate epimerase [Roseovarius sp. TM1035] gi|149141717|gb|EDM29772.1| diaminopimelate epimerase [Roseovarius sp. TM1035] Length = 277 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 99/275 (36%), Positives = 137/275 (49%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D RG +T I A++ FDQ+ +I DA + Sbjct: 9 LPFFKMHGLGNDFVVLDGRGRDLGLTPALIMAIADRHRGIGFDQLAVI---SQGMGDAHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R L + T RG LVA + G SV+MG+P Sbjct: 66 TFYNADGSTSAACGNATRCIARHLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA + D ++ P MGNPH FFV D LA FG Sbjct: 126 LDWAEIPLAEAMDTLEL----------PIEGGPVATGMGNPHCTFFV-ADAEAVPLAQFG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A V + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 AV V + GG + ++W ++ V+MTGE G Sbjct: 235 AVRVDLDGGTIHVDWREDG-VWMTGETAHVASGVF 268 >gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f. nagariensis] gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f. nagariensis] Length = 323 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 15/293 (5%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F+K +G+GN ++ID R + + T + + D ++ Sbjct: 33 SASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGVIFALPP-VGD 91 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI N DGSE + CGNG+RC+ +F + + + T+ G++ + DG + Sbjct: 92 TDLTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKAAPRKYKIHTLAGLIQPELLADGQVR 151 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV------ 171 VDMGEPIL+ +P + + VSMGNPHA+ + Sbjct: 152 VDMGEPILEGAKVPTTLA-PTQGSTVVQQDLIVDGKTYKVSCVSMGNPHAVIYSCDGDTI 210 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + D DLA G ++ +F N V + + + WERG G T ACG+ ACA Sbjct: 211 KIDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGRTLACGTGACA 270 Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VVA + +R V + GG L IEW+ ++NH++MTG A+ + G L + Sbjct: 271 LVVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGALRV 323 >gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 281 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 145/285 (50%), Gaps = 15/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN ++ID R + + A+ D ++ Q A+ D Sbjct: 3 IPFTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFALPGQ-AATDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGNG+RC+ +F+ + +++ T+ G ++ + + ++VD Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVD 121 Query: 120 MGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 MG P L IP L + +K+ + + L VSMGNPH + FV+ DL Sbjct: 122 MGPPQLLGSEIPTTLVKGSEKVLAVPLEVEGKDWLI----TCVSMGNPHCVTFVD-DLAS 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G HP+F + N+ V + + +R WERG G+T ACG+ ACA VVA+ Sbjct: 177 IPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVAAV 236 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 K +R +V++ GG L I W D +N V+MTG AK +EG I Sbjct: 237 STAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEGIYAI 281 >gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5] gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5] Length = 286 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 148/286 (51%), Gaps = 16/286 (5%) Query: 5 MVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+ R + + A+ + D ++ I A D Sbjct: 8 MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 65 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-------IRGILVAKENRDGSI 116 +RI+N DGSE + CGN +RCV +++ + L ++ + S+ Sbjct: 66 MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 125 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP+L+ +P + + + F VSMGNPH + +V+D + Sbjct: 126 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVEGREFRF----TAVSMGNPHCVIYVDDAVN 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +DL +G L HP+F +N+ A V S +D+R WERG G T ACG+ ACA++V+S Sbjct: 182 -FDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 240 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW + +NHV+MTG A+ ++GKL I Sbjct: 241 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286 >gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str. D14] Length = 278 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 152/285 (53%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN LV DN++ AI D ++ I A D + Sbjct: 1 MEFTKMHGLGNDFLVFYGEQQLPDNVSELAIRWCDRYFGVGGDGLVFILPSDKA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG-----ILVAKENRDGSIS 117 RIIN DG+E + CGN +RCV +++ + + S T ET+ L ++ ++ Sbjct: 59 RIINSDGTEAEQCGNAIRCVAKYVYDNRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPILD IP + + + F VSMGNPH + +V+ D + Sbjct: 119 VDMGEPILDGLTIPTTLNQNPVVSQPIETNGQEFKF----TAVSMGNPHCVIYVD-DAPN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +D+ ++G L HP F +N+ A VT+ + +++R WERG G T ACG+ ACA++V+S Sbjct: 174 FDVTTWGPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACATLVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+RA + + GG L IEW + +NHV+MTG A+ ++G ++I Sbjct: 234 LNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSVEI 278 >gi|297183608|gb|ADI19735.1| hypothetical protein [uncultured bacterium EB000_36F02] Length = 274 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 140/276 (50%), Gaps = 4/276 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R + ++ D I + + DQ+++I ++ +DA + Sbjct: 3 IKAFKMDGLGNDFVIIDQRIENIELSKDQIIKICNRNFIGCDQLIIIK--KNPKLDAELE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV FL+ +K T T G+L + + ++G P Sbjct: 61 FYNSDGSPTGACGNGTRCVADFLSKENNQKEITVWTSSGVLKSNILGSNLVETEIGTPKT 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPL+++ D + + I N+ V++GNPH +FFV+ D+ ++DL G Sbjct: 121 NWNEIPLSKNLDTKNLN-IKILSKNNTEHIGGAAVNVGNPHIVFFVK-DIENFDLKKIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H +F E N+++A+V + + ++ WERG GLT ACG+AACAS +A + Sbjct: 179 EIENHKLFPEKCNVTLAKVINKNLIKVKVWERGSGLTKACGTAACASAIAGNINGFVEKK 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ G L I N V M G ++ I Sbjct: 239 TDIEFKLGKLSIFIDAKNSVHMKGSVSDIKNIEIKI 274 >gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str. 56601] gi|29839327|sp|Q8F9V5|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str. 56601] Length = 281 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 145/284 (51%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + ID +T + I +S D ++ I + + D + Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG--DFMM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE-----NRDGSIS 117 + N DGS + CGNG+RCV +++ K+ ET GIL N+ +S Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYDHGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVS 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P+L IP+ ++ D+ +L VSMGNPH + FV+ D Sbjct: 122 VDMGKPVLVPSQIPVVWKNEETIIDQPLEIGDKNL---KFTAVSMGNPHCVIFVD-DSDE 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G L+ +H +F + VN+ + + L RTWERG G T ACG+ ACA +VA Sbjct: 178 FPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGN 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + V + + GG L I+W ++ ++ MTG A++ + G+++I Sbjct: 238 LTRRSGKDVQIDLRGGTLRIQWQESGNILMTGPAREIFSGEIEI 281 >gi|303256277|ref|ZP_07342293.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47] gi|330998973|ref|ZP_08322698.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT 11859] gi|302861006|gb|EFL84081.1| diaminopimelate epimerase [Burkholderiales bacterium 1_1_47] gi|329575715|gb|EGG57241.1| diaminopimelate epimerase [Parasutterella excrementihominis YIT 11859] Length = 284 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 7/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D ++T + L+ DQI+++ + D Sbjct: 3 IKFTKMHGAGNDFVVLDCTREPFSLTPQQLRFLADRHFGIGADQILVVEPAEAGEADFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+ ++ + +T++G++ + DG + V MG Sbjct: 63 RIFNADGGEVEQCGNGARCFVKFVYNKGLTEKKRIRAKTMKGVIELELKEDGMVRVSMGT 122 Query: 123 PILDWKLIPLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + +P R L V SMGNPH + V DD+ + Sbjct: 123 PSFEPSSLPFNPQGLPSREIRGFKQWAVRYKGELVWFSVCSMGNPH-VTIVTDDIESAPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F VN+ + + ++R WERG G T ACG+ CA+ S L Sbjct: 182 KELGPFIENHPAFPRRVNVGFIQPITEHEANVRVWERGAGETLACGTGNCAAAATSIELG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 + + GG L + W V + G A ++ ++++ Sbjct: 242 VLSSPILTHNRGGDLRLAWEGEGEDVELFGPAVTVFDSEIEVP 284 >gi|170751705|ref|YP_001757965.1| diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831] gi|170658227|gb|ACB27282.1| Diaminopimelate epimerase [Methylobacterium radiotolerans JCM 2831] Length = 325 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 120/279 (43%), Positives = 160/279 (57%), Gaps = 6/279 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG + + A++ D + FDQ+M++HD DAF+RI Sbjct: 38 RFLKMHGAGNAIVVLDLRGSAAKVRPEEARAIAQDPGSTFDQLMVLHDPVSPGADAFMRI 97 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSF------TFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV + ET G+L + + + +VDM Sbjct: 98 YNTDGSESGACGNGTRCVAYAMLDDPAMARPAEGGRLVLETRAGLLGVRRVSERAFTVDM 157 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W IPL+ F R IGP++ L +P V+MGNPHA+FFVE D +DL Sbjct: 158 GRPRLAWDEIPLSEPFPDTRRIELQIGPIDDPILHSPGAVNMGNPHAVFFVEQDPDSFDL 217 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G +L HP+F E N+S+A+VT E++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 218 ARIGPMLENHPLFPERANISVAQVTGRETIKLRVWERGAGLTLACGTAACATVVAASRLR 277 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R SV + GG L +EW ++HV MTG EG L Sbjct: 278 MIGRQASVALPGGELFVEWRADDHVLMTGPVALVAEGTL 316 >gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem] gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem] Length = 278 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 130/284 (45%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + + AI + + D ++LI + A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSIS 117 R+ N DGSE + CGNG+RCV ++ G + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVTKNEITAETGAGILTLQLFTDAGCKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L K IP+ ++ + + N SMGNPH + FV+ D+ Sbjct: 119 VNMGPPRLTRKEIPMLGEPEERVVNVPLNVLHSS---FNITCASMGNPHCVIFVD-DVDT 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 175 FQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAACV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ +++MTG A + + G++D+ Sbjct: 235 LNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFTGEIDL 278 >gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307] gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307] Length = 357 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 127/277 (45%), Gaps = 10/277 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G+GN +++D R A D ++L Q D ++ Sbjct: 19 FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGG-DVRMQ 77 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGE 122 I+N DGSE + CGNG+RC RFL + ET G+++ + ++VDMGE Sbjct: 78 ILNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGE 137 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L+ IP + V MGNPHA+ V+ DL D Sbjct: 138 PFLEPASIPTNLA---AGTPLPDGELQVAGISLQVAAVGMGNPHAVVQVD-DLESLDFDR 193 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L +HP F N+ +V + + L +R WERG G T ACG+ ACA+VVA+ Sbjct: 194 LGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLRGAC 253 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R +V++ GG L I+W NH+ M G A +EG L Sbjct: 254 ARQATVQLPGGPLQIDWDSTNHIQMAGPAVFVFEGVL 290 >gi|294851174|ref|ZP_06791847.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026] gi|294819763|gb|EFG36762.1| diaminopimelate epimerase [Brucella sp. NVSL 07-0026] Length = 294 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 145/282 (51%), Positives = 192/282 (68%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I IINCD Sbjct: 1 MNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAIINCD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW+ I Sbjct: 61 GTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDWQDI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL H Sbjct: 121 PLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLLENH 180 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+V + Sbjct: 181 PIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVTVNV 240 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 241 PGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDTQG 282 >gi|194700330|gb|ACF84249.1| unknown [Zea mays] Length = 308 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 91/289 (31%), Positives = 131/289 (45%), Gaps = 13/289 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A + D ++ + + Sbjct: 20 SERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVN-G 78 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + FT T G +V + DG + Sbjct: 79 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTIHTGAGKIVPEIQSDGQV 138 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMGEPIL IP ++ + VSMGNPH + F ++ Sbjct: 139 KVDMGEPILSGLDIPTKL-LATKNKAVVQAELAVEGLTWHVTCVSMGNPHCVTFGANELK 197 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L+ G H MF N +V S L +R WERG G T ACG+ ACA Sbjct: 198 VLQVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACA 257 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 VVA+ + R V + GG L IEW + +NHV+MTG A+ + G + Sbjct: 258 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVVFYGSV 306 >gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10] gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10] Length = 279 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 151/286 (52%), Gaps = 16/286 (5%) Query: 5 MVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++F KM G+GN +V+ R + + A+ + D ++ I A D Sbjct: 1 MMEFTKMHGLGNDFVVVYGERELPSDASELAVKLCNRFFGIGADGLVYILPS--AKADFM 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRG-----ILVAKENRDGSI 116 +RI+N DGSE + CGN +RCV +++ T ETI L ++ + S+ Sbjct: 59 MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHIDREEITIETIGAGVQQVRLTVQDGQVSSV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP+L+ +P + + + F VSMGNPH + +V+D + Sbjct: 119 RVDMGEPVLNGLSVPTLVDLNPVVNHPVEVDGREFRF----TAVSMGNPHCVIYVDDAVN 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +DL +G L HP+F +N+ A V S +D+R WERG G T ACG+ ACA++V+S Sbjct: 175 -FDLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACATLVSS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW + +NHV+MTG A+ ++GKL I Sbjct: 234 VLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279 >gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916] gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916] Length = 372 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN ++I+ R + + + D I+L + Sbjct: 1 MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 + +RI N DGSE + CGNG+RC+ RF +S++ ET G+++ DG Sbjct: 61 G-ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P+L +P + + + + L V MGNPH + V DL Sbjct: 120 IKVDMGAPMLAPDTVPTTLAVGEQGLPQGELTINGD--LLKVAAVGMGNPHVVVPV-PDL 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L P F N+ +V ++LD+R WERG G T ACG+ ACA++VA Sbjct: 177 ASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGTGACATLVA 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L + V + GG L I W D VFMTG A+ ++G + Sbjct: 237 AHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDGVV 281 >gi|225628131|ref|ZP_03786166.1| diaminopimelate epimerase [Brucella ceti str. Cudo] gi|260169356|ref|ZP_05756167.1| diaminopimelate epimerase [Brucella sp. F5/99] gi|261758874|ref|ZP_06002583.1| diaminopimelate epimerase [Brucella sp. F5/99] gi|225616956|gb|EEH14003.1| diaminopimelate epimerase [Brucella ceti str. Cudo] gi|261738858|gb|EEY26854.1| diaminopimelate epimerase [Brucella sp. F5/99] Length = 303 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 145/285 (50%), Positives = 193/285 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ + R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRAGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG + E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPTEWEFSGTFDPATGEWSRDTQG 291 >gi|118602558|ref|YP_903773.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166225752|sp|A1AWJ5|DAPF_RUTMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118567497|gb|ABL02302.1| diaminopimelate epimerase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 271 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 132/280 (47%), Gaps = 13/280 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +++D ++ I L+ FDQ++L+ +VD Sbjct: 2 LINFVKMHGLGNDFMMVDNLAGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 I N DG EV+ CGNG RC F++ + ET GI+ N D ++ VDMG Sbjct: 62 YVIYNADGLEVEQCGNGARCFAFFVSKKGLSNNNPIVVETRSGIINLYLNDDNTVRVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + I L + + VS+GNPH + VE D+ D++ Sbjct: 122 KPSFNPADILLLVPQQSTYYQ---------IEGFDLGAVSIGNPHCVMLVE-DVNTVDVS 171 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S + + + N+ ++ + ++LR +ERG G T ACGS ACA+VV Sbjct: 172 SIALRIQQSELLPNQANIGFMQILNTHEINLRVYERGSGETLACGSGACAAVVYGVEQGL 231 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + GG LIE+ HVF++G + +EGK++I Sbjct: 232 LKENVVAHLNGGDTLIEYIQGGHVFLSGPVQFVFEGKVEI 271 >gi|326388654|ref|ZP_08210247.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM 19370] gi|326206905|gb|EGD57729.1| diaminopimelate epimerase [Novosphingobium nitrogenifigens DSM 19370] Length = 269 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 104/275 (37%), Positives = 145/275 (52%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R +++ AL+ DQ++L+ + A D + Sbjct: 3 IPFRKMHGLGNDFVVIDARERAVEMSARRAAALADRHTGIGCDQLILLEPSETA--DVRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DG EV++CGN R V +L + + G ++A D ISV MG P Sbjct: 61 RIFNPDGGEVEACGNASRAVGLYLGGDKRIE------TLGGIIAASTSDTGISVAMGRPR 114 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IPLA D + PV L P V++GNPH IFFV D + DLA G Sbjct: 115 FGWDEIPLAYPMDTL------TMPVGWEDLVEPVAVNVGNPHVIFFV-PDTHSVDLARLG 167 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ P+F +N+++A +T ++LDLR WER GLT ACG+ ACAS +A+ T R Sbjct: 168 PLIENDPLFPRRINVNVATLTGPDALDLRVWERAAGLTRACGTGACASAIAAMRRKLTGR 227 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V + GG L+IEW D + + MTG A +EG Sbjct: 228 RVTVTLPGGPLVIEWTDADEIIMTGPATTSFEGSF 262 >gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA] gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA] Length = 280 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 8/283 (2%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ +R + +I S D ++LI A D Sbjct: 2 ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ +++ +++ T ET+ GI + K + + V+ Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVE 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +D L+ +R + D V MGNPH + F++ D+ + + Sbjct: 119 EVTVDMDLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVN 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA+ Sbjct: 178 LPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLN 237 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 HKT R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 238 HKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280 >gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA] gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA] Length = 278 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 133/284 (46%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ ++ +S D ++ IH A D + Sbjct: 1 MKFTKMHGCGNDYVYVNCFEETIENPNETAKFVSDRHFGIGSDGMICIHPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DG+E CGNG+RC+ +++ T + ++ + ++V Sbjct: 59 AMYNSDGTEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVNV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DM P+L+ IP+ +K D+ I VSMGNPH + FV+ + Sbjct: 119 DMEAPVLEADKIPVIYDEEKKVIDKPVIVD---GREYRITCVSMGNPHGVVFVD-SVDDL 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G + HPMF + VN +V ++ +R WERG G T ACG+ ACAS AS Sbjct: 175 DIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACASAYASYL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 KT V V +LGG L IE+ + H +FM G A K ++G++D+ Sbjct: 235 NQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278 >gi|226952076|ref|ZP_03822540.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244] gi|226837168|gb|EEH69551.1| diaminopimelate epimerase [Acinetobacter sp. ATCC 27244] Length = 284 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 94/280 (33%), Positives = 141/280 (50%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+D+ + + I L+ FDQ++L+ VD Sbjct: 3 LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLLVEPPDFPDVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 63 RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D D + + + N VV+MGNPHA+ V D+ D+A Sbjct: 123 PKFLPDEIPFVTQVD-EDIEGLYSLELADDKSINIDVVNMGNPHAVTIV-PDVLTADVAG 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 241 ASEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280 >gi|17544856|ref|NP_518258.1| diaminopimelate epimerase [Ralstonia solanacearum GMI1000] gi|21362465|sp|Q8Y344|DAPF_RALSO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|17427145|emb|CAD13665.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia solanacearum GMI1000] Length = 292 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 130/286 (45%), Gaps = 7/286 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D + T + A++ DQ++L+ VD Sbjct: 3 LHFTKMHGAGNDFVVLDGIATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC V+F+T R +++ E + GI DG ++VDMG Sbjct: 63 RIFNHDGGEVEQCGNGARCFVKFVTDRGLTDKRTIRVEVMNGISTLTMQPDGQVTVDMGA 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ + +P + + VSMGNPHA+ V+ D + + Sbjct: 123 PVFEAARLPFVPDALPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQVVD-DAEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ H +F VN + ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 182 REDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAAVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + V V GG L I W V MTG A +EG LD+ K Sbjct: 242 LLDSPVKVTTHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLDALK 287 >gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] Length = 279 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 8 FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN ++++ D++ + + D ++L+ Q A D +R Sbjct: 5 FTKWQGCGNDFVLVNGFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQA--DFRMR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS----ISVD 119 I N DG+E + CGNG+RC + + FT ET GILV + GS + VD Sbjct: 63 IFNADGTEAEMCGNGIRCFAGVVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVRVD 122 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEPIL+ + IP+ ++ + VSMGNPH + FVE D Sbjct: 123 MGEPILEGERIPVLGFGASRVIEQPIEA---EGETFSMTCVSMGNPHCVIFVE-DAQDVP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + FG LL +H F + N+ A + + +R WERG +T ACG+ +CA++VA+ Sbjct: 179 MEKFGPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLVAAALT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +T R V++ GG L IEW +N+HV+MTG A+K + G+ + Sbjct: 239 GRTKREAEVQLDGGRLQIEWAENHHVYMTGPAEKVFAGRYE 279 >gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644] gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644] Length = 293 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 135/288 (46%), Gaps = 14/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQD-ASVDA 62 + F KM GIGN + I + ++ A+ D ++L+ + + DA Sbjct: 3 LRFVKMHGIGNDYIYISGFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEADA 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-IRGILVAKEN--------RD 113 +R+ N DGSE CGNG+RCV +FL ++ +G V + R Sbjct: 63 VMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDRV 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V+MG PIL IP D + VSMGNPH + FVE Sbjct: 123 RRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVE- 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ DL G LL +H F + VN+ +A+V + + +RTWERG G+T ACG+ ACA + Sbjct: 182 DVASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTGACAVL 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 VA +T RA + + GG L +EW + V MTG A +EG D Sbjct: 242 VAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEGVWD 289 >gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2] gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2] Length = 276 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V + + A+ D ++ I A D + Sbjct: 1 MEFTKMNGLGNDFIVWYGHQELPSDASELAVRLCDRHFGIGADGLVYILPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSIS 117 RIIN DGSE + CGN +RC + + R+ T ET+ L + + Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP + + G F VSMGNPH + +VE D Sbjct: 119 VDMGEPILEGLKIPTTLDLTNVIDEPIEAGGSGFRF----TAVSMGNPHCVIYVE-DAPS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F + N+ A V S + +D+R WERG G T ACG+ ACA++VAS Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ++R V + GG L IEW D+NH++MTG A+ +EG++ Sbjct: 234 LNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276 >gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera] Length = 307 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 138/291 (47%), Gaps = 13/291 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F K G+GN +++D R + +T + L D ++ Sbjct: 19 ESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNFGIGADGVIFAMPG-ING 77 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + ++SFT T G++V + DG + Sbjct: 78 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLHTGAGLIVPEIQDDGKV 137 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-----V 171 VDMG+PIL +P + D+ N VSMGNPH + F Sbjct: 138 KVDMGKPILKALDVPTKLPAN-KDQSVVKSELNVDGVSWNVTCVSMGNPHCVTFGTKGGQ 196 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + +LA G H MF N +V S L +R WERG G T ACG+ ACA Sbjct: 197 NLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWERGAGATLACGTGACA 256 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 VVA+ R+ +V + GG L IEW ++NHV+MTG A+ + G + + Sbjct: 257 VVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVFYGSVPL 307 >gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469] gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469] Length = 277 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 134/284 (47%), Gaps = 15/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ ++ AI D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFKETVEDPEKTAILVSDRHFGIGSDGLILIKPSSVA--DGKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGS+ CGNG+RCV +++ + + + + ++ V Sbjct: 59 EMYNADGSQGAMCGNGIRCVAKYMYDYGITDKTSISVETKSGIKYLDLTVENGKVSAVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P+L IP + + + + VSMGNPHA+ +VE D+ H Sbjct: 119 NMGSPVLQAAAIPAVSEKETVIDEPVTVNGREWRL----TCVSMGNPHAVTYVE-DVKHL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G HPMF + VN A V ++++R WERG G T ACG+ ACA+ VAS Sbjct: 174 DIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACATAVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 T V+VK+LGG L I W N+V+MTG A ++G++ + Sbjct: 234 NGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEIAL 277 >gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313] gi|81577635|sp|Q7V7M5|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313] Length = 303 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 94/285 (32%), Positives = 136/285 (47%), Gaps = 14/285 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+ID R N + + D ++L + A Sbjct: 4 MLQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPR-A 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D ++I N DGS + CGNG+RC+ RF + + + + ET+ GI+ DG Sbjct: 63 DGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQ 122 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG P LD + IP + + + V MGNPH I VE DL Sbjct: 123 ICVDMGTPFLDPESIPTTLTIGSAGLPQGEC--HLGSTSLHVAAVGMGNPHLIVPVE-DL 179 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + ++G L KH F N+ ++ S L++R WERG G T ACG+ ACAS+VA Sbjct: 180 ENIPFENWGQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGACASLVA 239 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L ++ V + GG L I W VFMTG A+ ++G L Sbjct: 240 TCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDGVL 284 >gi|220904420|ref|YP_002479732.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254767100|sp|B8IZX7|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 287 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 134/286 (46%), Gaps = 13/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + I+ + + +S D ++LI A+ D + Sbjct: 5 LRFTKMQGIGNDYVYINGFQERIDSPGELARKISDRHFGIGSDGLVLILPS--ATADVRM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRD----GSISV 118 R+ N DGSE + CGN +RCV +++ + T ET G+ + + + +V Sbjct: 63 RMFNADGSESEMCGNAVRCVGKYVYDHGIQVKDVITVETRAGVKIVRLLFEAGKVCGATV 122 Query: 119 DMGEPILDWKLIPLARS--FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 DMGEP L IP+ D + + L VSMGNPHA+ F++ + Sbjct: 123 DMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKG-ID 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G HP+F + N A V S + +R WERG G T ACG+ ACA VA Sbjct: 182 DLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTGACAVAVAC 241 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V V++ GG L I W + +NHV+MTG A + G+ I Sbjct: 242 VLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287 >gi|82703657|ref|YP_413223.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196] gi|123543877|sp|Q2Y5Z0|DAPF_NITMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|82411722|gb|ABB75831.1| diaminopimelate epimerase [Nitrosospira multiformis ATCC 25196] Length = 277 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 133/281 (47%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID +++ + + L+ DQI+LI + D Sbjct: 3 LKFTKMHGLGNDFIVIDAVNQQISLSPEQLRRLADRHLGVGCDQILLIEKAE-GDADFRY 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VR++ ET+ G+++ + DG ++V+MG Sbjct: 62 RIFNADGGEVEQCGNGARCFVRYVHDHGMTDKQQVRIETLSGVVIPELEADGEVTVNMGV 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P D IP + VSMGNPHA+ V DL + + + Sbjct: 122 PKFDPVEIPFIAEQRAPTYSLSLDDRQVEI-----SSVSMGNPHAVQVVS-DLDNAPVLT 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ KH F + VN +V + LR +ERG G T ACG+ ACA+ VA Sbjct: 176 EGPVIEKHSRFPQRVNAGYMQVVDPHHIRLRVYERGAGETLACGTGACAAAVAGIQRGLL 235 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V G L I W +N V+MTG A ++G+++++ Sbjct: 236 ESPVRVSFSTGDLFIRWEGENQPVWMTGPAVAVFDGEIELQ 276 >gi|122203466|sp|Q2QNF7|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa Japonica Group] gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group] Length = 354 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 127/288 (44%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A + D ++ + + Sbjct: 66 SERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-G 124 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + SF T G+++ + DG + Sbjct: 125 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKV 184 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMG+PIL IP + VSMGNPH + F + Sbjct: 185 KVDMGQPILSGPDIPTKLPS-TKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELK 243 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L+ G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 244 VLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 303 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 VVA+ + R V + GG L IEW + +NH++MTG A+ + G Sbjct: 304 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 351 >gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab] gi|123506579|sp|Q2JUV6|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab] Length = 285 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 142/288 (49%), Gaps = 16/288 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M S + F K +G+GN +++D R +T + AL D ++ + Q+ Sbjct: 1 MPSR-LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQE- 58 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGS 115 D +R+ N DGSE + CGNG+RC+ RFL + T+ G +V + DG Sbjct: 59 GADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGL 118 Query: 116 ISVDMGEPILDWKLIP--LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG P L IP LA+ +K+ R +G VSMGNPH + F+E+ Sbjct: 119 VTVDMGIPRLLAGQIPTTLAKPEEKVVRQPLQVGGRE----WAVTAVSMGNPHCVVFLEE 174 Query: 174 --DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 L DL G L HP F E N A+V L LR WERG G+T ACG+ ACA Sbjct: 175 GGSLEELDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGACA 234 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 ++VA+ + +V++ GG L I W + HV+MTG A + G Sbjct: 235 ALVAAVLEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSGT 282 >gi|254717991|ref|ZP_05179802.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|265982937|ref|ZP_06095672.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|306839770|ref|ZP_07472571.1| diaminopimelate epimerase [Brucella sp. NF 2653] gi|264661529|gb|EEZ31790.1| diaminopimelate epimerase [Brucella sp. 83/13] gi|306405125|gb|EFM61403.1| diaminopimelate epimerase [Brucella sp. NF 2653] Length = 303 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 147/285 (51%), Positives = 193/285 (67%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+IT A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITPAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GPV+ L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPVDAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGHTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + Sbjct: 247 VNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDMHG 291 >gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1] gi|229807506|sp|A4J568|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1] Length = 284 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 144/285 (50%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ G+GN ++++ +G D+ ++ A D ++L++D D Sbjct: 1 MYFTKVHGLGNDFILVNAGTGQGFTDDCSTLAKEVCDRKFGIGADGLVLLYDS--GVADV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD----GSI 116 ++I+N DGSE + CGN +RCV ++L +K+ ET+ GI+V + + ++ Sbjct: 59 RMKIVNSDGSEAEMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMGEP ++ IP+ ++ + + +L VSMGNPH I FV DL Sbjct: 119 RVDMGEPRVERAEIPMIGPPGQVIGEELAVNGKVYL----VTAVSMGNPHCIIFV-PDLE 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L G + HP F + N+ +V + + WERG G T ACG+ ACA VA Sbjct: 174 DISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGACAVAVAG 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T R V+V + GG L+IEW +N ++MTG A + + G+ + Sbjct: 234 VLNGFTERMVTVHLPGGSLMIEWAENGRIYMTGPATEVFSGEYTV 278 >gi|294651117|ref|ZP_06728453.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194] gi|292823011|gb|EFF81878.1| diaminopimelate epimerase [Acinetobacter haemolyticus ATCC 19194] Length = 284 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+D+ + + I L+ FDQ++++ VD Sbjct: 3 LEFTKMHGLGNDFMVVDLITQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 63 RIFNADGSEVEQCGNGVRCFARFVHERRLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP D D + + + N VV+MGNPHA+ V D+ D+A Sbjct: 123 PKFLPDEIPFVTQVD-EDIEGLYSLELADDKSINIDVVNMGNPHAVTIV-PDVLTADVAG 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 181 IGPQVESHVRFPERVNAGFMQILDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTAYVYEGRLDLR 280 >gi|262369522|ref|ZP_06062850.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046] gi|262315590|gb|EEY96629.1| diaminopimelate epimerase [Acinetobacter johnsonii SH046] Length = 281 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 144/281 (51%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I L+ FDQ++++ +VD Sbjct: 2 LLEFTKMHGLGNDFMVVDLISQRAFLDTVTIQRLADRHFGIGFDQLLIVEPPDLPNVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + ++G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIKVQTKAGIVEPELGQNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + + + VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFLPQEIPFIADAP----EALYDIALANNEQLTIDVVNMGNPHAVTIV-PDVITADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H F + VN ++ + LR +ERGVG T ACG+ ACA+ ++ Sbjct: 177 RLGPQVESHERFPQRVNAGFMQIIDEKHARLRVFERGVGETLACGTGACAAAISGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + +V +++ GG L IEW + + V+MTG +EG++D+ Sbjct: 237 LDSSVEIELAGGKLHIEWREGDVVWMTGPTSNVYEGRIDLS 277 >gi|50085727|ref|YP_047237.1| diaminopimelate epimerase [Acinetobacter sp. ADP1] gi|81613095|sp|Q6F950|DAPF_ACIAD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49531703|emb|CAG69415.1| diaminopimelate epimerase [Acinetobacter sp. ADP1] Length = 281 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 144/281 (51%), Gaps = 8/281 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +++F KM G+GN +V+D+ + + I ++ FDQ++++ +VD Sbjct: 2 LLEFTKMHGLGNDFVVLDLISQRAYLDTTTIQRMADRHFGIGFDQLLIVEPPDYPNVDFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG+RC RF+ R K+ +T GI+ + +G + V+MG Sbjct: 62 YRIFNADGSEVEQCGNGVRCFARFVHERQLTKKTKIKVQTKAGIVEPELGPNGWVRVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + + + + + VV+MGNPHA+ V D+ D+A Sbjct: 122 YPKFMPHEIPFVTE----EFEALYTLELANEQSLKIDVVNMGNPHAVTIV-PDVLTADVA 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + H F + VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 177 TMGPQVESHVRFPQRVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG +EG+LD++ Sbjct: 237 LANEVEVELAGGKLQIAWQEGDVVWMTGPTANVYEGRLDLR 277 >gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863] gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863] Length = 272 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 90/281 (32%), Positives = 125/281 (44%), Gaps = 19/281 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 MV F KMEG GN + ++ + + A D +++I + D Sbjct: 1 MVRFTKMEGAGNDYIYVNNLVEQVPEERLPALARALSDRHFGVGADGLIVILPPAEPGYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 R+ N DGSE + CGNGMRC R+ R R+ +T G +V + D + S Sbjct: 61 FRFRMFNADGSEGEMCGNGMRCFARYCYERGLTARRRMRVQTAAGCVVPEVLVDDAGSFA 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 L I + R + VV G PH + FV+ D+ D Sbjct: 121 GVRVDLGPPRI--------LGDRRIAAEGREYP----VTVVDTGVPHIVIFVD-DVDAVD 167 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA G L +HP F VN++ A L RTWERG GLT ACG+ A A +VA+ Sbjct: 168 LAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTGASAVLVAACLK 227 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +T RA V+M GG L +EW + HVF+TG A+ +G Sbjct: 228 GRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAEFVCDGVF 268 >gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001] gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001] Length = 394 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 142/314 (45%), Gaps = 31/314 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD--------------------NITSDAINALS-TDDN 43 M+ + K +G+GN L++D RG D +T + I L Sbjct: 1 MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60 Query: 44 THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFE 100 D +++ ++ + +RI N DGSE + CGNG+RC+ RF + + + E Sbjct: 61 IGADGLIVAAPPREGG-ELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVE 119 Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 T+ G +V + DGS+ VDMG+P L + +P + + F Sbjct: 120 TLAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIGDAGIPQGSLEAAGESF--QVGAA 177 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 MGNPH + V DL DL FG L HP F N+ +V + L +R WERG G Sbjct: 178 GMGNPHVVIPV-PDLEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWERGAG 236 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T ACG+ ACA++V L R+ + + GG L I W ++HV+MTG A+ ++ + Sbjct: 237 PTLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVFDAVI 296 Query: 280 DIKTGKWIKKNEDD 293 W + DD Sbjct: 297 --APSLWDPEGVDD 308 >gi|148251980|ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] gi|166224244|sp|A5E915|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146404153|gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] Length = 289 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 122/277 (44%), Positives = 171/277 (61%), Gaps = 4/277 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM GIGN+I+V+D+R +T D A++ +DQ+M++ + +AFIRI Sbjct: 9 FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVAAR--VPYDQLMVLQPPRLDGTEAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCVVR + + + S TFET G+L + +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPAPDLYTVDMGVPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VV+MGNPHA+F+V+ D+ YDL FG L Sbjct: 127 WQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVDGDVNSYDLERFGPL 186 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + NR V Sbjct: 187 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRANRIV 246 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + GG L IEW + ++HV MTG A E+EG+ + + Sbjct: 247 QMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQ 283 >gi|258543859|ref|ZP_05704093.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826] gi|258520899|gb|EEV89758.1| diaminopimelate epimerase [Cardiobacterium hominis ATCC 15826] Length = 280 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 83/277 (29%), Positives = 125/277 (45%), Gaps = 9/277 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V++ + I AL+ FDQ+++I DA+ D RI Sbjct: 6 FSKMHGLGNDFIVLNALQQPFDWPRARICALADRHSGIGFDQLLIIEPAPDAAHDYAYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGSEV+ CGNG RC ++L + RG + S + Sbjct: 66 YNADGSEVEHCGNGARCFGKYLRDHSLHPLDRPLRVAIKRGSITIAYVGTDSDGSEQYRV 125 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + P F +R + +VSMGNPHA+ V+ D+ +A+ Sbjct: 126 DMGE---PDFTPFTPAQTERLYQPVSAAGETLEMGIVSMGNPHAVCVVD-DVATAPVAAV 181 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +HP+F VN ++ + LR +ERG G T ACG+ ACA+V + Sbjct: 182 GAALQQHPLFPAAVNAGFMQIRDRRHIRLRVYERGAGETQACGTGACAAVAVGIMRGLLD 241 Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 R V V++ G L I+W ++MTG A + G+L Sbjct: 242 REVQVELPRGNLTIQWQGTGQPLYMTGPAATVYHGEL 278 >gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|254767088|sp|B6YS11|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 275 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 139/282 (49%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ID + + AI D ++LI + Sbjct: 1 MKFTKMHGAGNDYIYIDCFKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPSDK--CSFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKE----NRDGSISV 118 R+ N DGSE Q CGN +RCV +++ + + T ET+ G+ + ++ + V Sbjct: 59 RMFNSDGSEAQMCGNAIRCVGKYVYDNGYTRKLNITIETLAGVKQLELFPTNDKIRKVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+PIL K IP+ +K+ + + VSMGNPH + FVE + Sbjct: 119 NMGKPILLAKDIPVIWEKEKLIYETIDFSSEQWIL----TAVSMGNPHVVIFVEK-VSRL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G + HPMF E +N+ + SL +R WERG G T ACG+ ACA++VAS Sbjct: 174 DVKRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAALVASVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 K NR ++ +LGG L +EW + HVFMTG+A + G+ Sbjct: 234 NGKLNRKATISLLGGDLELEWDEKTEHVFMTGDASLVFIGEF 275 >gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855] gi|212662618|gb|EEB23192.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855] Length = 280 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 8/283 (2%) Query: 3 SSMVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ +R + +I S D ++LI A D Sbjct: 2 ATTIKFTKMQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ +++ +++ T ET+ GI + K + + V+ Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVE 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +D L+ +R + D V MGNPH + F++ D+ + + Sbjct: 119 EVTVDMDLPLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVN 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G L HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA+ Sbjct: 178 LPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLN 237 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 HK R V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 238 HKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 280 >gi|90421739|ref|YP_530109.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18] gi|122477672|sp|Q21CU6|DAPF_RHOPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|90103753|gb|ABD85790.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB18] Length = 288 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 123/274 (44%), Positives = 172/274 (62%), Gaps = 4/274 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +++ A++++ +DQ+M++ + +AF+RI Sbjct: 9 FSKMNGIGNEIVVLDLRDHPVAVSAADARAIASE--VPYDQLMVLQPPRTPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGSE +CGNGMRCV R + + + TFET G+L +VDMG P L W Sbjct: 67 NNDGSESSACGNGMRCVARQVFATSASDALTFETRAGLLNCWRPAPNLYTVDMGPPKLGW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K IPLA F IGP++ L P VVSMGNPHAIF+V+ D+ +DLA FG LL Sbjct: 127 KDIPLAEEFRDTRSIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAHDLARFGPLL 185 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+++A++ + + +RTWERGVGLT ACGSAACA+ VA+ L + NR V Sbjct: 186 ENHPIFPERANITLAQIVDRDHIVIRTWERGVGLTKACGSAACATAVAAARLRRVNRVVH 245 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + GG L IEW ++HV MTG A E+EG+ D Sbjct: 246 ITLPGGELGIEWRASDDHVLMTGPAAFEFEGRFD 279 >gi|77163849|ref|YP_342374.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707] gi|254435289|ref|ZP_05048796.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27] gi|123595094|sp|Q3JEA2|DAPF_NITOC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76882163|gb|ABA56844.1| diaminopimelate epimerase [Nitrosococcus oceani ATCC 19707] gi|207088400|gb|EDZ65672.1| diaminopimelate epimerase [Nitrosococcus oceani AFC27] Length = 276 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN +VID ++T+ + ++ DQ++L+ ++D Sbjct: 3 IAFTKMQGLGNDFVVIDALSQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC RF+ + + +T GI+ + DG I+VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFARFVREQGLTDKNVLRVQTASGIIELQLETDGQITVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + G + VSMGNPH + V + +A Sbjct: 123 PRFAPHQIPFKVDQEADYYSLELDGQQVEIG-----AVSMGNPHCVLRVPA-VDTAPVAH 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G LL HP F + VN+ A++ S L LR +ERG G T ACG+ ACA+ V Sbjct: 177 WGPLLESHPRFPQRVNVGFAQIVSPGHLRLRVYERGAGETPACGTGACAAAVIGKRRGWL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V+V + GG L I W + V+M+G A+ ++G +++ Sbjct: 237 SGQVNVDLPGGRLGIHWEGDGKSVWMSGPAEIVFKGSIEL 276 >gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON] gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON] Length = 277 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN +V+D + A D I+++ A DA Sbjct: 1 MHFVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCDRHFGIGADGIIIVLPSDIA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSIS 117 +RI+N DGSE + CGNG+RC +++ K ET+ GI+ + + + Sbjct: 59 MRIVNADGSEAEMCGNGIRCFAKYVYESGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P + IP ++ + + +SMG PH + FV+ D+ Sbjct: 119 VDMGKPDFEPGAIPAFMPGTRIVERPLEVDSQPYAITS----MSMGVPHTVIFVD-DVDE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G + KHP+F + N++ V + + +RTWERG G T ACG+ +CAS VA+ Sbjct: 174 VDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASAVAAA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +T RAV+V ++ G L I W +++ VFMTG A K ++G ++ Sbjct: 234 ITGRTGRAVTVHLIAGQLEIRWAEDDTVFMTGPAAKVFQGDIE 276 >gi|85704066|ref|ZP_01035169.1| diaminopimelate epimerase [Roseovarius sp. 217] gi|85671386|gb|EAQ26244.1| diaminopimelate epimerase [Roseovarius sp. 217] Length = 277 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 97/275 (35%), Positives = 137/275 (49%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T I A++ FDQ+ +I DA + Sbjct: 9 LPFFKMHGLGNDFVVLDGRARDLGLTPGLIMAIADRHRGIGFDQLAVI---TQGMGDAHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ R+L + T RG LVA + G SV+MG+P Sbjct: 66 TFYNADGSTSAACGNATRCIARYLMDESGKARLELSTARGALVAVDAGGGLTSVNMGQPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA + D ++ P MGNPH FFV D LA FG Sbjct: 126 LDWAEIPLAEAMDTLEL----------PIEGGPVATGMGNPHCTFFV-ADAEAVPLAQFG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ +A V + + +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 175 PRYEHHPLYPERTNVQVATVIGPDHIRMRVWERGVGVTLASGSSSCATAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG + ++W ++ V+MTGE G L Sbjct: 235 RVRIDLDGGTIHVDWREDG-VWMTGETAHVASGVL 268 >gi|226946777|ref|YP_002801850.1| diaminopimelate epimerase [Azotobacter vinelandii DJ] gi|259595050|sp|C1DJ56|DAPF_AZOVD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226721704|gb|ACO80875.1| diaminopimelate epimerase [Azotobacter vinelandii DJ] Length = 276 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ H +I A FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVIDLVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET G++ DG + VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTVKKRIRVETRSGVIELDVRPDGQVCVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ + IP +D G L +SMGNPHA+ VE ++ + Sbjct: 122 PPRLEPREIPFQAENAALDYQVEVDGCEVELA-----ALSMGNPHAVLRVE-NVESAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKLEHHPRFPQRVNVGFLQVVDRQHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W + V MTG A + +EG++ + Sbjct: 236 MDSPVLVDLPGGRLSIAWAGPDQSVMMTGPAVRVYEGQVRL 276 >gi|87121332|ref|ZP_01077222.1| diaminopimelate epimerase [Marinomonas sp. MED121] gi|86163489|gb|EAQ64764.1| diaminopimelate epimerase [Marinomonas sp. MED121] Length = 269 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 130/275 (47%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D D I L FDQ++++ + +D RI NC Sbjct: 1 MHGLGNDFVVVDAVSRKVYFNKDMIARLGDRHTGIGFDQLLVVEPPTNPDMDFRYRIFNC 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DG+EV+ CGNG RC F+ + + ET G + + +G ++VDMG P + Sbjct: 61 DGTEVEHCGNGARCFATFVQDKELISNDIINVETKNGPIQLRVLANGQVTVDMGVPSFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P + + D G VS+GNPHA+ V+ +L + G + Sbjct: 121 ADLPFTGTANGAFYDIPVAG-----ESYPITPVSVGNPHAVHKVD-ELSDEYVERIGEAI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H +F VN+ ++ S ++LR +ERGVG T ACG+ CA+VVA V Sbjct: 175 ESHDLFPNNVNVGFMQLVSDSEINLRVYERGVGETQACGTGTCAAVVAGIKQGWLAAKVK 234 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 +LGG L IEW + + MTG K +EG++ + Sbjct: 235 ANLLGGELTIEWQGEGQPILMTGPTAKVFEGQIYL 269 >gi|254690073|ref|ZP_05153327.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|256258326|ref|ZP_05463862.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|260755611|ref|ZP_05867959.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|260884637|ref|ZP_05896251.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|297247173|ref|ZP_06930891.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196] gi|260675719|gb|EEX62540.1| diaminopimelate epimerase [Brucella abortus bv. 6 str. 870] gi|260874165|gb|EEX81234.1| diaminopimelate epimerase [Brucella abortus bv. 9 str. C68] gi|297174342|gb|EFH33689.1| diaminopimelate epimerase [Brucella abortus bv. 5 str. B3196] Length = 303 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 146/285 (51%), Positives = 194/285 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FA+M G+GN+I+V DMRG D+ITS A L++D T FDQIM IHD + D +I II Sbjct: 7 FARMNGLGNQIIVADMRGRADSITSAAAIRLASDSETAFDQIMAIHDPRTPGTDYYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R +FTFET GIL A E+ DG ISVDMG P DW Sbjct: 67 NCDGTQAQACGNGTRCVVQALAAETGRHAFTFETRAGILTATEHDDGLISVDMGTPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA++ + +GP + L +P + SMGNPHA+F+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAQAVADTRKIELQVGPADAPVLHSPSIASMGNPHAVFWVDKDVWSYELDKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS +++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 ENHPIFPERANISIAHVTSSDTIDLRTWERGAGLTRACGSAACAAAVSAARTGRTGRKVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V + GG LLIEW D++HV TG A+ E+ G D TG+W + + Sbjct: 247 VNVPGGPLLIEWRDDDHVMKTGPAEWEFSGTFDPATGEWSRDTQG 291 >gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21] gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21] Length = 278 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + + AI + + D ++LI + A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD-------GSIS 117 R+ N DGSE + CGNG+RCV ++ G + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVSKNEITAETGAGILTLQLFTGAGGKVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L K IP+ ++ + + N SMGNPH + FV+ D+ Sbjct: 119 VNMGPPRLTRKEIPMLGEPEERVVNVPLNVLHSS---FNITCASMGNPHCVIFVD-DVDS 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + +G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 175 FQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSSAVTAACV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T + + + GG L +EW ++ +++MTG A + + G++ + Sbjct: 235 LNGLTEKRILNHLTGGDLEMEWGEDGNIYMTGPAVEVFSGEIGL 278 >gi|49083432|gb|AAT51031.1| PA5278 [synthetic construct] Length = 277 Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ + + FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + + + G L VSMGNPH + VE ++ + Sbjct: 122 PPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVE-NVDSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|15600471|ref|NP_253965.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAO1] gi|218894381|ref|YP_002443251.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58] gi|254238025|ref|ZP_04931348.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719] gi|254243835|ref|ZP_04937157.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192] gi|12230928|sp|Q51564|DAPF_PSEAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724215|sp|B7V5G9|DAPF_PSEA8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|9951591|gb|AAG08663.1|AE004940_7 diaminopimelate epimerase [Pseudomonas aeruginosa PAO1] gi|126169956|gb|EAZ55467.1| diaminopimelate epimerase [Pseudomonas aeruginosa C3719] gi|126197213|gb|EAZ61276.1| diaminopimelate epimerase [Pseudomonas aeruginosa 2192] gi|218774610|emb|CAW30427.1| diaminopimelate epimerase [Pseudomonas aeruginosa LESB58] Length = 276 Score = 215 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ + + FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + + + G L VSMGNPH + VE ++ + Sbjct: 122 PPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVE-NVDSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|33520022|ref|NP_878854.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus] gi|81666875|sp|Q7VRM5|DAPF_BLOFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|33504368|emb|CAD83261.1| diaminopimelate epimerase [Candidatus Blochmannia floridanus] Length = 276 Score = 215 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN ++ID SD I +LS FDQ++++ D ++D Sbjct: 1 MRFSKMHGLGNDFVIIDSITQKVYFNSDKIRSLSNRFYGIGFDQLLVVEPPYDPNIDFHC 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG+RCV RF+ + ++ T ++ ISV+MGE Sbjct: 61 RIYNADGSEVYQCGNGIRCVARFVCIKKLTNKQHIKISTDTYSMMLSVLDSEFISVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP + + F F VVS+GNPH + VE + + Sbjct: 121 PIFDPIKIPFFSTQYQKMYVLFVPN-----FTILCGVVSIGNPHCVILVEQ-VDLVPVTV 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G++L H F + N+S ++ S ++ LR +ERG G T ACGSAACA+V Sbjct: 175 LGSILENHHCFPKKANISFMQIISQNNIKLRVYERGSGETKACGSAACAAVAIGIQQGLL 234 Query: 243 NRA--VSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + V V + GG L I W ++M G A ++G +++ Sbjct: 235 KKNISVQVNLPGGDLFISWKGLGYPLYMIGSATYIYDGCINL 276 >gi|74318544|ref|YP_316284.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259] gi|74058039|gb|AAZ98479.1| diaminopimelate epimerase [Thiobacillus denitrificans ATCC 25259] Length = 288 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 131/280 (46%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V D +T + ++ DQI+++ VD Sbjct: 14 LRFTKMHGLGNDFVVFDGVNQTVTLTPERCRRIADRHFGVGCDQILVVEKPTRPDVDFRY 73 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + + ET G++ + DG ++VDMG Sbjct: 74 RIFNADGGEVEQCGNGARCFVRFVHDHGLTDKTAIRVETASGVIEPRLLADGRVTVDMGA 133 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P +P + + VVSMGNPHA+ V +DL + Sbjct: 134 PRFAPAEVPFVAEAEA-----LTYPLKIGQHRLDIAVVSMGNPHAVLRV-NDLDSAPVDI 187 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ H F + VN +V + + LR +ERG G T ACG+ ACA+ V+ Sbjct: 188 LGAVIESHSRFPQRVNAGFMQVLTPHDIRLRVFERGAGETLACGTGACAAAVSGIRQGAL 247 Query: 243 NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 VSV GG L+IEW V MTG A+ +EG+L++ Sbjct: 248 ASPVSVHTRGGDLVIEWAGAGAPVLMTGPAETVFEGELEL 287 >gi|84503501|ref|ZP_01001556.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597] gi|84388179|gb|EAQ01132.1| Diaminopimelate epimerase [Oceanicola batsensis HTCC2597] Length = 289 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 97/275 (35%), Positives = 142/275 (51%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +++D RG T A+ FDQ+ I D + + D + Sbjct: 21 LPFRKMHGAGNDFVILDSRGMAPVCTPGLARAVGDRHRGVGFDQLAEIRDGE--NCDIAL 78 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV + + T T RG+L + R ++ V+MG P+ Sbjct: 79 DFWNSDGSRAGACGNATRCVAAEWMTETGQDRVTIRTTRGVLRGEM-RGEAVWVNMGPPV 137 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLAR D + +P V MGNPHA+FFVE D+ D+A+ G Sbjct: 138 LDWAQVPLAREVDLLHL----------PIAGDPCGVGMGNPHAVFFVE-DIDAVDVAARG 186 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + P++ E N+ +V S + + +R WERG G+T ACGS ACA VA+ T R Sbjct: 187 AEVEHDPLYPEATNVEFVQVRSHDEVRMRVWERGTGITLACGSGACAVAVAAHRRGLTGR 246 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V +++ GG L ++W D+ V+MTG + +EG+L Sbjct: 247 HVRIEVDGGWLELDWRDDG-VWMTGPVARVFEGRL 280 >gi|330827983|ref|YP_004390935.1| diaminopimelate epimerase [Aeromonas veronii B565] gi|328803119|gb|AEB48318.1| Diaminopimelate epimerase [Aeromonas veronii B565] Length = 276 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++DF+KM G+GN +V+D ++D I L+ FDQ++L+ D +D Sbjct: 2 LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + T RG +V + + ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRIVLQLEGENQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + VVSMGNPH + V + + Sbjct: 122 VPQFEPGKIPF-----RAQKAEKTYLLRAQEHTVMCGVVSMGNPHCVIEV-PSVADAPVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ +H F E VN+ + + + LR +ERG G T ACG+ ACA+ V K Sbjct: 176 TLGAIMERHERFPERVNVGFMEMVNATEIKLRVFERGCGETLACGTGACAAAVIGISQGK 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 236 LKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEV 276 >gi|75676960|ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] gi|74421830|gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] Length = 297 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 123/275 (44%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +T+ A+++ +DQ+M++ + +AF+RI Sbjct: 16 FSKMNGIGNEIVVVDLRDNPATVTAGEARAVASPGGVPYDQLMVLQPPRTPGTEAFVRIY 75 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L G SVDMG P Sbjct: 76 NNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSAPGLYSVDMGSPKFG 135 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 WK IPLA F +GP++ L +P VVSMGNPHAIF+V+ D++ YDLA FG L Sbjct: 136 WKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD-DIHAYDLARFGPL 194 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + R V Sbjct: 195 LENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATAVAAARLKRVERIV 254 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 255 HMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFD 289 >gi|145300548|ref|YP_001143389.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida A449] gi|166224238|sp|A4SRW9|DAPF_AERS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|142853320|gb|ABO91641.1| diaminopimelate epimerase [Aeromonas salmonicida subsp. salmonicida A449] Length = 276 Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++DF+KM G+GN +V+D ++D I L+ FDQ++L+ D +D Sbjct: 2 LIDFSKMHGLGNDFMVVDGVTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + T RG + + + ++V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVRLKGLINRDRIAVSTARGRISLQLEGENQVTVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + VVSMGNPH + V + + Sbjct: 122 VPQFEPGKIPF-----RAQKAEKTYLLRAQEHTVMCGVVSMGNPHCVIEV-PSVADAPVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G ++ +H F E VN+ + + + LR +ERGVG T ACG+ ACA+ V K Sbjct: 176 TLGAIMERHERFPERVNVGFMEMVNATEIRLRVFERGVGETLACGTGACAAAVIGISQGK 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+V + GG L I W V+MTG A+ ++G++++ Sbjct: 236 LKERVTVSLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276 >gi|313106694|ref|ZP_07792912.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016] gi|310879414|gb|EFQ38008.1| diaminopimelate epimerase [Pseudomonas aeruginosa 39016] Length = 276 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ + + FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP R+ + L VSMGNPH + VE ++ + Sbjct: 122 PPRLAPAEIPFQAE-----REALSYEIEVNGQLVELAAVSMGNPHGVLRVE-NVDSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|255009607|ref|ZP_05281733.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] gi|313147388|ref|ZP_07809581.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] gi|313136155|gb|EFR53515.1| diaminopimelate epimerase [Bacteroides fragilis 3_1_12] Length = 269 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 21/285 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ N AI + D ++LI A D Sbjct: 2 TRTIQFTKMHGAGNDYIYVNTLRFPIRNPGKTAIEWSACHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ + + T ET+ GI V K + + Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNIITLETLSGIKVLKLHLEAQTVK- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D ++ F VSMGNPH + FV+ D+ D Sbjct: 119 -------------AVTVDMGVPLETGTIDFDNKFPFVSTQVSMGNPHLVTFVD-DIRSID 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L +HP+F + N+ A++T + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPKLERHPLFPDRTNVEFAQITGENKIRMRVWERGSGITQACGTGACATAVAAHLT 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 +T R V + M GG L I+W + NHV+MTG A K ++G ++++ Sbjct: 225 GRTGRTVDIVMDGGTLTIKWDEATNHVYMTGPAVKVFDGTIELRE 269 >gi|260464163|ref|ZP_05812356.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075] gi|259029966|gb|EEW31249.1| diaminopimelate epimerase [Mesorhizobium opportunistum WSM2075] Length = 294 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 150/292 (51%), Positives = 194/292 (66%), Gaps = 2/292 (0%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M S+ FAKM GIGN+I+V DMRG D +T+ A L+ D T FDQIM IHD + Sbjct: 1 MASTT-PFAKMNGIGNEIIVADMRGRADRVTAAAAITLNADAATGFDQIMAIHDARTPGT 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 FI I+N DG+ Q+CGNGMRCVV+ L + +KSFTFET+ GIL A E+ DGSISVDM Sbjct: 60 AFFIDILNSDGTGAQACGNGMRCVVQALAAETGQKSFTFETVAGILNASEHADGSISVDM 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P W+ IPLA F IGP++ L +P VSMGNPHAIF+V+ D++ Y+L Sbjct: 120 GMPRFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYEL 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 FG LL HP+F E N++IA+VTS ES+ +RTWERG GLT ACG+A+CA+VVA+ Sbjct: 180 DRFGPLLENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGTASCAAVVAAARTR 239 Query: 241 KTNRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 +T R+VS+ GG L +EW D++HV +TG A+ E+ G D TG W + E Sbjct: 240 RTGRSVSLLTPGGGTLHVEWRDDDHVILTGAAEWEFSGSFDPSTGAWARDTE 291 >gi|85711582|ref|ZP_01042640.1| Diaminopimelate epimerase [Idiomarina baltica OS145] gi|85694734|gb|EAQ32674.1| Diaminopimelate epimerase [Idiomarina baltica OS145] Length = 275 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 9/280 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN +VID + + + I FDQ++L+ D +D Sbjct: 2 LLQFSKMHGLGNDFVVIDNVTQNFYVNPEQIKQWADRHRGIGFDQLLLVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC +F+ ++ + T G +V +DG ++V+MG Sbjct: 62 YRIFNADGSEVAQCGNGARCFAKFVKAKGLSNKNHLKVSTKAGTMVLHIEKDGQVTVEMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP+ + +P + V+ +GNPH + + D+ +A Sbjct: 122 EPMFEPASVPFKA-----QKPEHTYVLRVADETVLCGVMGLGNPHCVIETD-DVNTAPVA 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G +A+H F E VN+ ++ S + + LR +ERGVG T ACGS ACA+ V K Sbjct: 176 SLGEKIAQHERFPESVNVGFMQIVSRQQIKLRVFERGVGETQACGSGACAAAVIGMQQDK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V V + GG L I W V MTG A ++G++ I Sbjct: 236 LERQVKVTLPGGELTIRWQAGQSVKMTGPATLIFDGQMVI 275 >gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427] gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427] Length = 283 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM GIGN + +D + +S D +++I + A D + Sbjct: 3 INFTKMHGIGNDYVYVDGFKQTLKDPNAFSEFISDRHFGIGSDGLVIILPSEIA--DFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDG----SISV 118 R+ N DGSE + CGN RC+ +F+ +K+ + ET+ GI + + V Sbjct: 61 RMFNADGSEGKMCGNATRCIGKFVYETGYTDKKNISLETLSGIKYLTLTVEDGKVVYVEV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ IL + IP+ + I + VSMGNPH + + E D+ Sbjct: 121 DMGKAILSPQDIPVISDQETFINTPISIDN----EIYYGTCVSMGNPHVVVYCE-DVDLL 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L S G +P+F E +N ++ ++ +R WERG G T ACG+ ACA V+ Sbjct: 176 SLESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACAVAVSCVL 235 Query: 239 LH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K N ++VK+ GG L I + ++ V M G A K ++G ++ Sbjct: 236 NGYCKINEEITVKLRGGDLKITYKEDGTVLMKGPATKVFDGTIE 279 >gi|83592519|ref|YP_426271.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170] gi|83575433|gb|ABC21984.1| diaminopimelate epimerase [Rhodospirillum rubrum ATCC 11170] Length = 280 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 108/289 (37%), Positives = 149/289 (51%), Gaps = 13/289 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M F KM G+GN +VID R ++T + + AL+ DQ + I + Sbjct: 1 MSIRGTHFLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGG 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 V AF+ + N DG V+SCGN RCV R L + +S ET+ G++ A+ I VD Sbjct: 61 V-AFMGLRNADGEIVESCGNASRCVGRLLLEEREAESVLIETLGGMVEARRASGELIEVD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG L W+ IPLA + D + + + L +P VSMGNPHA+FFV+ D D Sbjct: 120 MGPARLTWQEIPLAGAADTLHIEL------SVGPLSDPCAVSMGNPHAVFFVD-DADAID 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA++G L+ H +F N+ + + L +R WERGVG+T ACG+ ACAS VA+ Sbjct: 173 LATWGPLIEHHGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRR 232 Query: 240 HKT-NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKW 286 R V + GG L I W + + HV MTG A + G LD G W Sbjct: 233 GLIAGRTAEVVLDGGTLGIVWRESDGHVLMTGSATLAYSGVLD--EGAW 279 >gi|227325796|ref|ZP_03829820.1| diaminopimelate epimerase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 259 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 84/261 (32%), Positives = 124/261 (47%), Gaps = 9/261 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFAKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + H L VVSMGNPH + VE D+ + + Sbjct: 121 PNFEPQQVPFRA---VKAEKTYIMRADEHTVLCG--VVSMGNPHCVIQVE-DVDTAKVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E N+ ++ ++ LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERANIGFMQIVDSHTVRLRVYERGAGETQACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNN 263 + V V + GG L I+W + Sbjct: 235 SANVRVSLPGGELDIQWDGRD 255 >gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1] gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710341|gb|EDS20920.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1] gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2] gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA] Length = 283 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 130/285 (45%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ N + +S D ++ I A D + Sbjct: 1 MKFTKMHGCGNDYVYVNCLEEKINNPNKVAKFISDRHFGIGSDGMICICPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGSE CGNG+RC+ +++ T + ++ + + V Sbjct: 59 AMYNSDGSEGAMCGNGVRCIAKYVYDYGLTDKTTITIETKGGIKELDLTVEDGKVTWVKV 118 Query: 119 DMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DM PI IP + D++ + + N +SMGNPH + FV+ + Sbjct: 119 DMEAPITKASQIPAIYDDLDEVIDQPVIVDGKEY----NITCISMGNPHGVVFVD-SVAD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G HPMF + VN + +++ +R WERG G T ACG+ ACAS AS Sbjct: 174 IDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACASAYASY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 KT + V V +LGG L IE+ + + +FMTG A ++G++D+ Sbjct: 234 LNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278 >gi|107104379|ref|ZP_01368297.1| hypothetical protein PaerPA_01005455 [Pseudomonas aeruginosa PACS2] gi|116053427|ref|YP_793752.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14] gi|152986770|ref|YP_001351337.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7] gi|296392136|ref|ZP_06881611.1| diaminopimelate epimerase [Pseudomonas aeruginosa PAb1] gi|122256554|sp|Q02E84|DAPF_PSEAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225743|sp|A6VE52|DAPF_PSEA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115588648|gb|ABJ14663.1| diaminopimelate epimerase [Pseudomonas aeruginosa UCBPP-PA14] gi|150961928|gb|ABR83953.1| diaminopimelate epimerase [Pseudomonas aeruginosa PA7] Length = 276 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ + + FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +KS ET GI+ DG ++VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVETKGGIIELNIRPDGQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + + + G L VSMGNPH + VE ++ + Sbjct: 122 PPRLAPAEIPFQAEREALSYEIEVNGQRVELA-----AVSMGNPHGVLRVE-NVDSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ VA Sbjct: 176 SLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAVAGIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V + + GG L IEW V MTG A + +EG++ + Sbjct: 236 LQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|312114979|ref|YP_004012575.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100] gi|311220108|gb|ADP71476.1| diaminopimelate epimerase [Rhodomicrobium vannielii ATCC 17100] Length = 291 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 111/281 (39%), Positives = 165/281 (58%), Gaps = 5/281 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN V+D R +T+D +A++ DQ++++ A D F+ Sbjct: 6 ISFKKMNGLGNDFAVLDARANDFQLTADEASAIANRETGVGCDQVIVLEPSSRA--DVFM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI+N DGSEV +CGN RCV + + + R+ T ET G+L A+ + DG ++VDMG P Sbjct: 64 RILNADGSEVGACGNASRCVGALVAAELGRERVTIETAAGVLDARISGDGLVTVDMGVPR 123 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W+ IPLA+ I + L P V ++GNPHAIF+V D+ YDLA+FG Sbjct: 124 FGWRDIPLAKEEPDTRAISLAITLPDGRVLEGPSVANVGNPHAIFWV-ADVDAYDLATFG 182 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L P+F E N+S+A V +++ LR WERG G+T ACG+AACA+ V++ +T R Sbjct: 183 GALEYDPIFPERANISLAEVIDDQTVKLRVWERGAGITQACGTAACATAVSAARTGRTGR 242 Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284 +V +++ GG + IEW D++H+ MTG E+EG L + G Sbjct: 243 SVEIRLPGGVIGIEWRADDDHILMTGPVAHEFEGTLTLSGG 283 >gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1] gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561] gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513] gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1] gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561] gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513] gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 274 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ R + + AI D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEAREN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R K ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FV+ L Sbjct: 118 MGSPIFEANKIPVKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVK-SLDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V GG LL+EW D+N ++++G ++ + G++++ Sbjct: 233 GKTERNVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 274 >gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166] Length = 276 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ H +I A FDQ++++ Q+ VD Sbjct: 2 LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I VDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + + G L VSMGNPHA+ V+ + + Sbjct: 122 PPRLVPAEIPFQAEREALSYSLEVDGQQVELA-----AVSMGNPHAVLRVD-SVERAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276 >gi|148555836|ref|YP_001263418.1| diaminopimelate epimerase [Sphingomonas wittichii RW1] gi|166225760|sp|A5VAG4|DAPF_SPHWW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148501026|gb|ABQ69280.1| diaminopimelate epimerase [Sphingomonas wittichii RW1] Length = 274 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 101/280 (36%), Positives = 143/280 (51%), Gaps = 17/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAF 63 V F KM G+GN +VID R +T+ AL+ DQ++L+ A DA Sbjct: 3 VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPS--AVADAR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGSEV++CGN RCVV L ET+ G+L + + DG +SV++GEP Sbjct: 61 MRIFNADGSEVEACGNATRCVVSLLGGSA-----RIETVAGLLEGR-SADGQVSVELGEP 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 DW IPLA + D PV L P ++GNPH +FFV + L Sbjct: 115 RFDWDAIPLAYAMDTR------AMPVAWEELEAPMAANVGNPHVVFFV-PETDAVALDRL 167 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + P+F +N+++A V ++ LR WERGVGLT ACG+ ACA+ V++ + Sbjct: 168 GPRIETDPLFPARINVNVATVDDRANIRLRVWERGVGLTDACGTGACATAVSAIRAGLVD 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V V + GG L I+W + MTG A + + D+ Sbjct: 228 SPVRVTLPGGPLTIDWAPGRPIVMTGPATHVFTAETDLSA 267 >gi|160878788|ref|YP_001557756.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg] gi|160427454|gb|ABX41017.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg] Length = 304 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 18/292 (6%) Query: 1 MQSSM---VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQ 56 +Q M + F KM+G GN + ++ N A D ++LI + Sbjct: 20 LQKGMVANMKFTKMQGCGNDYVYVNCFEETINDPNGVAKKVSDRRFGIGSDGLILIKPSE 79 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDG 114 A D + + N DGS+ + CGNG+RCV +++ + + ET+ G+ DG Sbjct: 80 IA--DFTMHMYNADGSQGKMCGNGIRCVGKYVYDHGMTQKTSLAIETLGGVKYLALIVDG 137 Query: 115 ----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++VDMGEP LD KLIP+A +++ I VS+GNPHA+ F Sbjct: 138 GKVTEVTVDMGEPELDPKLIPIAVEEEQVVNMPITIADREFYITG----VSVGNPHAVTF 193 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +E D + + ++G L +HP+F E +N ++ +++++R WERG T ACG+ A Sbjct: 194 IE-DTNSFPIENYGPLFEEHPLFPEKINTEFVQILDRKTVNMRVWERGSAETHACGTGAT 252 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 SV A+ T V+V MLGG ++I + + N +FMTG A ++G++++ Sbjct: 253 CSVYAAILNGLTEDEVTVHMLGGDVVIRYDREKNRLFMTGPAVTVFDGEIEL 304 >gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5] Length = 284 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 135/286 (47%), Gaps = 17/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + +S D ++LI + A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFEETVKDPAAVAKFVSDRHFGIGSDGLILIRPSEIA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGS+ CGNG+RCV +++ + + ++ + + V Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYVYDHGIVDKTSLSIATRSGIKYVDLTIRDGKASMVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL K IP+ +++ + + VSMGNPHAI +V+ D+ Sbjct: 119 NMGSPILTAKEIPVVAETEQVIDAPITVDGKEYHM----TAVSMGNPHAIIYVD-DVNSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H F + VN +V ++ +R WERG G T ACG+ ACA VAS Sbjct: 174 DLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGACAVTVASIL 233 Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 K + + V+V++LGG L I W + + V+MTG A ++G++D+ Sbjct: 234 NDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279 >gi|160017028|sp|A2ZLS4|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic; Short=DAP epimerase; Flags: Precursor gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group] Length = 357 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 127/288 (44%), Gaps = 13/288 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A + D ++ + + Sbjct: 69 SERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-G 127 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC RF+ + SF T G+++ + DG + Sbjct: 128 ADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKV 187 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 VDMG+PIL IP + VSMGNPH + F + Sbjct: 188 KVDMGQPILSGPDIPTKLPS-TKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELK 246 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L+ G H MF N V S L +R WERG G T ACG+ ACA Sbjct: 247 VLHVDDLKLSDIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACA 306 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 VVA+ + R V + GG L IEW + +NH++MTG A+ + G Sbjct: 307 VVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYGS 354 >gi|322384337|ref|ZP_08058035.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150839|gb|EFX44276.1| diaminopimelate epimerase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 280 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 152/286 (53%), Gaps = 18/286 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M++ KM G+GN +V+ ++ AI + D ++ I ++A D Sbjct: 1 MMNITKMNGLGNDFIVVSGEKQLPAGVSDLAIRLCNRHFGIGADGLVYILPSKEA--DFM 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI---------RGILVAKENRDG 114 +RIIN DGSE + CGN +RCV +++ + E R + K+ + Sbjct: 59 MRIINSDGSEAEQCGNAIRCVAKYVVDHGLVEHQNDEITIQTIGAGIQRVFVHKKDGKVD 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++ VDMGEPIL+ IP + + + + + F VSMGNPH + +V+D Sbjct: 119 TVRVDMGEPILNGLDIPTTVNANPVVKYPVEVNGRRFQF----TAVSMGNPHCVIYVDDA 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +L +G LL HP+F + +N+ A V S + + + WERG G T ACG+ ACA++V Sbjct: 175 V-TMNLHEWGPLLEVHPLFPKKINVEFATVQSRDRVIMHVWERGAGPTLACGTGACATLV 233 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 AS + T+R ++ + GG L IEW++ +NHV+MTG A + ++G+L Sbjct: 234 ASVLNNLTDRRATISLKGGDLFIEWNEADNHVYMTGPAAEVFQGRL 279 >gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 279 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 137/282 (48%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +V+D + + + A+ D +M++ + A D + Sbjct: 1 MEFTKWQGCGNDFVVVDFLAREPVDFAALAVRMCDRHFGVGADGLMVVLPSETA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118 R N DG+E + CGNG+RC + R+K++ FT ET+ GI+ + + + V Sbjct: 59 REFNPDGTEPEMCGNGIRCFARYLYEYGRIKKEQFTIETLAGIMTPRILIEDGKVTAVEV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L IP+ +R P+ VSMGNPHA+ FV+ D H Sbjct: 119 DMGVPVLTGDDIPV----RGFGTERVIAAPITVAGRTYKMTCVSMGNPHAVIFVD-DAEH 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + LA G H +F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +RA +++ GG + +EW ++ H+FMTG A+ + G Sbjct: 234 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGVW 275 >gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162] Length = 285 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 84/291 (28%), Positives = 138/291 (47%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ N ++ A D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPSDIA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-------AKENRDGSIS 117 + N DGS+ CGNG+RCV ++ + + K+ + + Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTSISVATKSGIKYLDLTLGKDGKVALVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG PIL + IP+ + +++ + H+ + VSMGNPHAI +++ L + Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVINEPLHVDGETYHI----TAVSMGNPHAIVYMDA-LKN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G H F + +N +V +L +R WERG G T ACG+ ACA VAS Sbjct: 174 LDIEKLGPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 ++ V+VK+LGG L I W+ + V+MTG A ++G++D+ + + Sbjct: 234 LNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIDVSSLE 284 >gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA] gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA] Length = 277 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ S+ +S D +++I+ A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDRHYGVGSDGLIMINPSDKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + S + ET+ GI ++ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P+L + +P+ +++ + + + VSMGNPHA+ F++ D+ + Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRM----TCVSMGNPHAVVFIDQDVKEF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G H F + VN V + +R WERG G T ACG+ ACA VA Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG L I+W + N V+MTG A+ ++G+ Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGEWK 277 >gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1] gi|29839316|sp|Q8DGM2|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1] Length = 286 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 17/287 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN L+ID R + + T + D ++ + D Sbjct: 3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGT-GESDYR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGSISV 118 +R+ N DGS Q CGNG+RC+ +F+ + R + +T+ G++V + DG ++V Sbjct: 62 MRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L + IP + D+ + VSMGNPH + FVE D+ Sbjct: 122 DMGKPRLLAQQIPTTLAA--ADQKVVDVPLTVGDRQWLVTCVSMGNPHCVTFVE-DVAAL 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DLA G HP F + N +V + L +R WERG G+T ACG+ ACA++VA+ Sbjct: 179 DLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLVAAVL 238 Query: 239 LHKTNR-----AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + +V++ GG L I W + H++MTG A + G L Sbjct: 239 TGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285 >gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399] gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399] Length = 287 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +V+D + + A+ D +M++ + A D + Sbjct: 9 MEFTKWQGCGNDFVVVDFLDREPVDFAALAVRMCDRHFGIGADGLMVVLPSETA--DIRM 66 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118 R N DG+E + CGNG+RC + R++++ FT ET+ GI+ + + + V Sbjct: 67 REFNPDGTEPEMCGNGIRCFARYLYEYGRIEKEQFTIETLAGIMTPRILIEDGKVTAVEV 126 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L IP+ +++ + + VSMGNPHA+ FV+ D H Sbjct: 127 DMGVPVLTGDDIPVRGFGTERVIAVPITVAGEEYKM----TCVSMGNPHAVIFVD-DAEH 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + LA G H +F +N V +R WERG G+T ACG+ CA++ A Sbjct: 182 FPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATLTAGV 241 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +RA +++ GG + +EW ++ H+FMTG A+ + G Sbjct: 242 LTGVLDRAADIEVDGGVIRVEWREDGHIFMTGPAEPVFTGVW 283 >gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470] gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470] Length = 283 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 131/286 (45%), Gaps = 11/286 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 MQ + F K + GN + ++ ++ D I+ + + A+ Sbjct: 4 MQEGFMHFTKWQACGNDFVFVNAMTMDIRPVVKKCVSICNRNFGIGADGIIFVLPSEKAT 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSIS 117 +RI N DGSE + CGNG+R ++ + F+ ET GIL + DG + Sbjct: 64 --LQMRIFNSDGSEAEMCGNGIRAFAKWAHELGLVSKHHFSVETGAGILFPELLPDGKVR 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ IP+ D M +R N L VSMGNPH + F + D+ Sbjct: 122 VDMGVPHLNSSEIPVTGFGDGMVVNR---KLTNDLHTYRITCVSMGNPHCVIFTD-DIDR 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G+ L F N+ A++ L +R WERG G+T ACG+ CA+VVA+ Sbjct: 178 ISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGTCATVVAAI 237 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNN--HVFMTGEAKKEWEGKLDI 281 V + GG L I W ++ HVFMTG A+K +EG+ I Sbjct: 238 LNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283 >gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191] gi|229807517|sp|B2KDH2|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191] Length = 274 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 140/278 (50%), Gaps = 8/278 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G+GN ++ID + + + D ++ + AS D I Sbjct: 1 MEFVKYQGLGNDFILIDCVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPS--ASADYKI 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGEP 123 RIIN DG+E + CGNG+RC +RF+ +K + TFET+ G + + + + VDMG P Sbjct: 59 RIINSDGTEPEMCGNGIRCAMRFVFDYIKPQRKLTFETLAGPIKTELLAENLVKVDMGAP 118 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L IPL S + VSMGNPH + FVE D+ D+A Sbjct: 119 KLTAAQIPLNISDSDGRAVDIPVKLEGGKIKGTG--VSMGNPHFVIFVE-DIKKTDVAKT 175 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + + F + N+ +V + L ++ WERGVG+T ACG+ ACAS+VA +KT Sbjct: 176 GKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVAGVLNNKTE 235 Query: 244 RAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280 R V++ GG L +EW D+ VFMTG A + + G Sbjct: 236 RLALVELDGGQLTVEWPDDGASVFMTGPATEVFSGVFK 273 >gi|52425839|ref|YP_088976.1| diaminopimelate epimerase [Mannheimia succiniciproducens MBEL55E] gi|81609437|sp|Q65RL9|DAPF_MANSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52307891|gb|AAU38391.1| DapF protein [Mannheimia succiniciproducens MBEL55E] Length = 274 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFPEEVIKKLADRHRGIGFDQMLIVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K T G ++ DG I V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVTLKGLTDKKDIAVSTTNGKMILTVQDDGMIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + IP ++ + + VSMGNPH V+ D+ ++ Sbjct: 121 PVWEPAKIPF-----IANKFEKNYILRTDIQTVLCGAVSMGNPHCTLVVD-DVETANVTE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN+ +V + + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPLLENHERFPERVNVGFMQVINPNHIKLRVYERGAGETQACGSGACAAAAIGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V + GG L IEW H ++MTG+A ++G + + Sbjct: 235 ENKVQVDLPGGSLWIEWQGEGHPLYMTGDATHVYDGVIKL 274 >gi|262373158|ref|ZP_06066437.1| diaminopimelate epimerase [Acinetobacter junii SH205] gi|262313183|gb|EEY94268.1| diaminopimelate epimerase [Acinetobacter junii SH205] Length = 284 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 138/280 (49%), Gaps = 5/280 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+D+ + + I L+ FDQ++++ D Sbjct: 3 LEFTKMHGLGNDFMVVDLVTQRAYLDTVTIQRLADRHFGVGFDQLLIVEPPDFPDADFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG+RC RF+ R + +T GI+ + +G + V+MG Sbjct: 63 RIFNADGSEVEQCGNGVRCFARFVHERQLTTKTKIRVQTKAGIVEPELGANGWVRVNMGP 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P IP + D + + + N VV+MGNPHA+ V D+ D+A Sbjct: 123 PKFLPAEIPFLTD-EHEDTEGLYKLGLADNKSINIDVVNMGNPHAVTIV-PDVLTADVAG 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + H F VN ++ + + LR +ERGVG T ACG+ ACA+ V+ Sbjct: 181 IGPQVESHARFPARVNAGFMQIVDEKHIRLRVFERGVGETLACGTGACAAAVSGMRRGLL 240 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W + + V+MTG ++ +LD++ Sbjct: 241 ANEVEVQLAGGKLHIAWREGDVVWMTGPTTHVYDARLDLR 280 >gi|83953199|ref|ZP_00961921.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1] gi|83842167|gb|EAP81335.1| diaminopimelate epimerase [Sulfitobacter sp. NAS-14.1] Length = 302 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 143/306 (46%), Gaps = 41/306 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-------------------------NITSDAINALST 40 + F KM G+GN +V+D R +T A+ Sbjct: 9 LPFMKMHGLGNDFVVLDARQKDVLDAREKVVLDARQTDARADAPPALPKVTPALAQAIGH 68 Query: 41 D-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 FDQ+ +I + + DA + N DGS +CGN RC+ RFL + Sbjct: 69 RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125 Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 T RG L A++ +G SV+MG P L W IPLAR D ++ P Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLGWDEIPLARQMDTLEL----------PIDGAPTA 175 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 MGNPH FFV+ D+ DLA FG + H ++ E N+ IA++ + + +R WERGV Sbjct: 176 TGMGNPHCTFFVD-DVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G+T A GS++CA+ VA+ T RAV + + GG L I+W ++ V+MTG + + G L Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293 Query: 280 DIKTGK 285 + Sbjct: 294 TPSFLE 299 >gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701] gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701] Length = 388 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 144/286 (50%), Gaps = 14/286 (4%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQD 57 +++ F+K +G+GN L++D R D + + + + D ++L + Sbjct: 7 AVLAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALPPE- 65 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDG 114 + +RI N DGSE + CGNG+RC+ RFL +++ ET+ G +V + DG Sbjct: 66 GDGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLADG 125 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMGEP L + +P + + + F MGNPH + VE+ Sbjct: 126 MVRVDMGEPFLLPEQVPTTLATGPAGLPQGELEVEGARFAAAAA--GMGNPHLVIPVEE- 182 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL FG LL +HP F N+ + + L +R WERG G T ACG+ ACA++V Sbjct: 183 VEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATLV 242 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A L + R+ + + GG L I+W +NH+FMTG A+ ++G L Sbjct: 243 ACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDGVL 288 >gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425] gi|254767099|sp|B8HU20|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425] Length = 280 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 131/282 (46%), Gaps = 12/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN ++ID R + A++ D ++ + D Sbjct: 3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPAT-GETDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL-----TSRMKRKSFTFETIRGILVAKENRDGSISV 118 +RI N DGSE + CGNG+RC+ RF + + T+ G + + DG ++V Sbjct: 62 MRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P L IP + VSMGNPH I FVE ++ Sbjct: 122 DMGQPRLLAGEIPTTLK--PAAEKVIAQPLQVGGRSWSVTCVSMGNPHCITFVE-NVAAI 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G HP F + +N V + L +R WERG G+T ACG+ ACA++VA+ Sbjct: 179 DLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGACAALVAAVL 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + +V++ GG L IEW V MTG A++ ++G L Sbjct: 239 NDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQGVL 280 >gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501] gi|166225745|sp|A4VGW5|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501] Length = 276 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +VID+ H +I A FDQ++++ Q+ VD Sbjct: 2 LLRFTKMHGLGNDFMVIDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I VDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVVDKRLTVKRKIKVETKGGIIELDIRPDGQIRVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + + G L SMGNPHA+ V+ + + Sbjct: 122 PPRLVPAEIPFQAEREALSYSLEVDGQQVELA-----AASMGNPHAVLRVD-SVERAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276 >gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453] gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453] Length = 278 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 97/285 (34%), Positives = 151/285 (52%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V+ N S+ L D ++ I + A D + Sbjct: 1 MEFTKMHGLGNDFVVVYGEQELPNDASERAVKLCHRFFGIGADGLVYILPSRKA--DFMM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSIS 117 RI+N DGSE + CGN +RCV + + R+ T ETI L ++ + S+ Sbjct: 59 RIMNSDGSEAEQCGNAIRCVAKYVYDHGHINREEITIETIGAGVQQVRLTVQDGQVSSVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP+L+ +P + + + F VSMGNPH + +V+D + Sbjct: 119 VDMGEPVLNGLSVPTTIDLNPVVDHPVEVDGREFRF----TAVSMGNPHCVIYVDDAVN- 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F +N+ A V S + +D+R WERG G T ACG+ ACA++V+S Sbjct: 174 FDLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACATLVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T+R+ ++ + GG L IEW + +NHV+MTG A+ ++G L I Sbjct: 234 LNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278 >gi|218261608|ref|ZP_03476354.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii DSM 18315] gi|218223922|gb|EEC96572.1| hypothetical protein PRABACTJOHN_02022 [Parabacteroides johnsonii DSM 18315] Length = 274 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 14/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ N AI + D ++LI + A D + Sbjct: 5 IRFTKMHGAGNDYIYVNAMAFPIRNPEKLAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGN RC+ +++ + +K+ T ET GI + Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYVYDKRLTDKKNVTLETRSGIKELQLTTRKLSGSRE-- 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 ++I + + + VVSMGNPH + FVE D+ + +L + Sbjct: 121 -----EVIEVTVDMGCPVVGEAALEIEAGGYFYTGTVVSMGNPHLVIFVE-DIANINLPA 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F N+ +V +++ + ++ WERG G+T ACG+ ACA+ VA KT Sbjct: 175 IGPLLECHPLFPNRTNVEFVQVLNMDEVRMKVWERGSGITQACGTGACATAVAGVIRRKT 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L I W + + HV+MTG A K +EG+L+I Sbjct: 235 GRKTKVVMDGGPLTIRWDESSGHVYMTGGAVKVFEGELEI 274 >gi|154251868|ref|YP_001412692.1| diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1] gi|154155818|gb|ABS63035.1| Diaminopimelate epimerase [Parvibaculum lavamentivorans DS-1] Length = 293 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 110/282 (39%), Positives = 156/282 (55%), Gaps = 8/282 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D+R +T A++ DQ++ I + D F+ Sbjct: 7 HFLKMNGLGNDFVVLDLRREPFVLTDAIARAIADREKGIGCDQLITIEPARQGG-DVFMG 65 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG V++CGN RC+ + + + + T ET+ G VA I+VDMG P L Sbjct: 66 IRNHDGGTVEACGNAARCIGKLILDETGKDAVTIETLAGDTVATRAEGDEITVDMGAPRL 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPL+ F IGP+ + +P VV++GNPHA+FFVE D+ DL G Sbjct: 126 DWNQIPLSEEFQDTRAIELEIGPLGAPIMHSPGVVNVGNPHAVFFVE-DVDAIDLERSGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+S+A+V S + +RTWERG GLT ACG+AACA+ VA+ KT R Sbjct: 185 MLEHHPLFPERANISVAKVLSPTHIRIRTWERGAGLTRACGTAACAATVAAIRRRKTERK 244 Query: 246 VSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282 ++V + GG L +EW + HV MTG ++EG LD + Sbjct: 245 ITVTLPGGDLTVEWLPDDENGYGHVLMTGPVAFDYEGTLDPR 286 >gi|114797495|ref|YP_762200.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444] gi|114737669|gb|ABI75794.1| diaminopimelate epimerase [Hyphomonas neptunium ATCC 15444] Length = 269 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 106/275 (38%), Positives = 157/275 (57%), Gaps = 7/275 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM G GN + D R T++ I ++ D DQ++ + +DA+ D F+R Sbjct: 1 MKLWKMNGAGNAFAIFDARSTAFTPTTEQIRKIAAD--LKADQVIAME--RDATKDVFMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGSEV +CGN RCV + + T +T +L A +G I+VDMG P + Sbjct: 57 IWNSDGSEVSACGNATRCVGLLMLDETGKDRVTIQTEADMLRATRAGEGLITVDMGSPQM 116 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPL+ D D IGP++ L P VVSMGNPHA+FFV+ D+ YD+ + G Sbjct: 117 GWEDIPLSEKMDVRGVD-VKIGPIDAPILSRPAVVSMGNPHAVFFVK-DVAAYDIPAIGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F +G N+ A+V E++ LR WER GLT ACG+ ACA++V + T R Sbjct: 175 LVEWHPLFPKGTNVGFAQVIDRETIRLRVWERAAGLTRACGTGACAALVCAARAGLTGRK 234 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + + GG L I+W + ++HV+MTG + E+E ++ Sbjct: 235 ARMILDGGDLTIDWRESDDHVYMTGPVELEFEAEI 269 >gi|145590184|ref|YP_001156781.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048590|gb|ABP35217.1| diaminopimelate epimerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 284 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 15/285 (5%) Query: 11 MEGIGNKILVIDMRGCHD-NITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V++ IT + AL+ DQI+L+ D RI N Sbjct: 1 MHGAGNDFIVLNGIDQDLSEITREQWQALAHRQFGIGADQILLVEKATRPDADFRYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG EV+ CGNG RC VRF+ + + E +L K + DG + VDMG PI D Sbjct: 61 ADGGEVEQCGNGSRCFVRFVLDQGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFD 120 Query: 127 WKLIPLARSFD---KMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYHYDLA 181 LIP + + + + P++ + V +SMGNPHA+ V D+ + Sbjct: 121 HNLIPFNANGLASMQEFHEMLYALPIDLPATHDSLVGVLSMGNPHAVQVVG-DVDSAPVL 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + +HP F VN+ +V + + LR +ERG G T ACG+ ACA VV+ Sbjct: 180 EEGSAIERHPAFPNKVNVGYLQVLNRNEIKLRVYERGAGETLACGTGACAGVVSGIRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHD-----NNHVFMTGEAKKEWEGKLDI 281 + V V GG L I W + V MTG A +EG+ +I Sbjct: 240 LDSPVKVHTRGGDLQIVWGGVIDEVAHPVIMTGPATTVFEGETEI 284 >gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681] gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus polymyxa E681] Length = 277 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 142/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V + A+ D ++ I + A D + Sbjct: 1 MEFTKMNGLGNDFIVWFGHQDLPSGASELAVRLCDRHFGVGADGLVYILPSEKA--DFCM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSIS 117 RIIN DGSE + CGN +RC + + R+ T ET+ L + + Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ IP ++ + G VSMGNPH + +VE D Sbjct: 119 VDMGEPILEGLKIPTTLERTRVINEPIEAGGSGF----CFTAVSMGNPHCVIYVE-DAPS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HP+F + N+ A V S + +D+R WERG G T ACG+ ACA++VAS Sbjct: 174 FDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATLVASV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 ++R V + GG L IEW D+NH++MTG A+ +EG+L Sbjct: 234 LNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRL 276 >gi|90408776|ref|ZP_01216921.1| diaminopimelate epimerase [Psychromonas sp. CNPT3] gi|90310120|gb|EAS38260.1| diaminopimelate epimerase [Psychromonas sp. CNPT3] Length = 275 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 144/279 (51%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+G+GN +VID ++ AI L+ FDQ++L+ D +D Sbjct: 3 IQFSKMQGLGNDFMVIDNITQSVFLSKTAIQRLADRNFGIGFDQLLLVEPPYDPELDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + +++ T +G + K +DG+I+VDMG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKLKGLTQKRVINVSTAKGKIQLKIEQDGNITVDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI D IP + + + H + VVSMGNPH + V+ D+ + + Sbjct: 123 PIFDPHKIPFVAKKE---EKTYILRVQEHTVICG--VVSMGNPHCVVLVD-DIDSAPVDT 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F VN+S + S + LR WERGVG T ACG+ ACA+ V K Sbjct: 177 LGPLLENHERFPNKVNVSFLEIKSPDYAKLRVWERGVGETLACGTGACAAAVIGQLQGKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++++ GG L W V MTG A+ ++G++ I Sbjct: 237 ATHCTIELPGGKLKFFWQMGQSVRMTGAAEFVFDGQIQI 275 >gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109] gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109] Length = 366 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 17/300 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + ++ + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 + +RI+N DGSE + CGNG+RC+ R+ + + ET+ G++ + D Sbjct: 60 EGELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L + IP + + + + + V MGNPH + V+ DL Sbjct: 120 LRVDMGPPFLTPEAIPTTVMPEDGLPQGVLLLEDEQIRVAS---VGMGNPHVVVPVD-DL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L HP F N+ +V S E L++R WERG G T ACG+ ACA++VA Sbjct: 176 ASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL--DIKTGKWIKKNED 292 + L + V + GG L+IEW D + V MTG A+ ++G + ++ +G + + +D Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDGVMTPELMSGLFAVEPQD 295 >gi|56461655|ref|YP_156936.1| diaminopimelate epimerase [Idiomarina loihiensis L2TR] gi|81599935|sp|Q5QUS6|DAPF_IDILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56180665|gb|AAV83387.1| Diaminopimelate epimerase [Idiomarina loihiensis L2TR] Length = 275 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 135/278 (48%), Gaps = 9/278 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F+KM G+GN +V+D + + D I FDQ++L+ D +D Sbjct: 2 LLHFSKMHGLGNDFMVVDNVTQNLYVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFH 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC +F+ ++ + T G +V +DG ++VDMG Sbjct: 62 YRIFNADGSEVAQCGNGARCFAKFVKAKNLSNKNHLKVSTKAGKMVLHLEKDGQVTVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP+ + +P + V+ +GNPH + V+ ++ + Sbjct: 122 EPLFEPAAVPFKA-----QKAEQTYVLRVKEETVLCGVLGLGNPHCVIAVD-NVDTTPVE 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G LA H F E VN+ + S + + LR +ERGVG T ACGS ACA+ VA Sbjct: 176 TLGAALAAHERFPESVNVGFMQKVSADEIKLRVFERGVGETRACGSGACAAAVAGIQQGL 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V V + GG L+I W V MTG A+ ++G++ Sbjct: 236 LNERVKVSLPGGDLIIRWQQGQPVKMTGPAELVYDGQM 273 >gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 278 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + S A D ++L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117 RIIN DGSE + CGNG+RC +++ R K F ET+ GI+ + + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ D D + + MG PH + FV+ D+ Sbjct: 119 VNMGKPSFKRKDIPMQGEPD---SDAINTSIEVDGKEYKITSLLMGVPHTVLFVD-DVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + +H +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 175 VDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIASN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 235 LNGYTERKANVHLYFGTLEIEWQEDGTVFMTGPAEEVFVGE 275 >gi|77920664|ref|YP_358479.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380] gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380] Length = 279 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 14/285 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + FAKM G GN + ++ + ++ +S D ++LI + A D + Sbjct: 1 MKFAKMHGAGNDYVYVNCFEQTIDDPAEMARKVSNRNFGIGSDGLILILPSEVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117 R+ N DGSE + CGNG+RCV ++ + G + ++ + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGLVEKKEITAETGAGILTLQLFTNDRDKVERVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P L IP+ S + + + VSMGNPH I FV+ ++ Sbjct: 119 VNMGKPRLTRGEIPMTGSPE---EQVINAELKVLDRTFHITCVSMGNPHCIIFVD-NVDE 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + +A +G ++ PMF N+ + S + RTWERG G T ACG+ + A VA Sbjct: 175 FPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGTGSSAVTVACV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +T R + +LGG L +EW ++ V+MTG A + +EG D + Sbjct: 235 LNERTERRLLNHLLGGDLEMEWAEDGSVYMTGPAVQVFEGVFDPQ 279 >gi|83942144|ref|ZP_00954606.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36] gi|83847964|gb|EAP85839.1| diaminopimelate epimerase [Sulfitobacter sp. EE-36] Length = 302 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 144/306 (47%), Gaps = 41/306 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-------------------------NITSDAINALST 40 + F KM G+GN +V+D R +T A+ Sbjct: 9 LPFMKMHGLGNDFVVLDAREKVVLDARQKEMLDARDGAVRADGTPALPKVTPALAQAIGH 68 Query: 41 D-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 FDQ+ +I + + DA + N DGS +CGN RC+ RFL + Sbjct: 69 RQFGVGFDQLAVI---TNGAADAHLTFFNADGSTSAACGNATRCIARFLMEETGKTQLHL 125 Query: 100 ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 T RG L A++ +G SV+MG P L+W IPLAR D ++ P Sbjct: 126 TTDRGDLAARDAGNGLTSVNMGHPQLEWDEIPLARQMDTLEL----------PIDGAPTA 175 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV 219 MGNPH FFV+ D+ DLA FG + H ++ E N+ IA++ + + +R WERGV Sbjct: 176 TGMGNPHCTFFVD-DVDAIDLAGFGPGIEHHALYPERTNVQIAQIIGPDHIRMRVWERGV 234 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G+T A GS++CA+ VA+ T RAV + + GG L I+W ++ V+MTG + + G L Sbjct: 235 GITLASGSSSCATAVAAARRGLTGRAVRIDLDGGTLHIDWREDG-VWMTGPSAHVFSGVL 293 Query: 280 DIKTGK 285 + Sbjct: 294 TPSFLE 299 >gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens] Length = 311 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 127/283 (44%), Gaps = 12/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+K +G+GN L++D R ++A + D ++ + ++ D Sbjct: 25 LAFSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGEN-GADFK 83 Query: 64 IRIINCDGSEVQSCGNGMRCVV-------RFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + I N D SE + CGNG+RC+ + FT T G +V DG I Sbjct: 84 MTIYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLI 143 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMGEP L +P A + DR VSMGNPH++ FV+D Sbjct: 144 TVDMGEPELAGPKVPCALAPTDGDR-VVDAALEAGGATYAVTAVSMGNPHSVAFVDDAKA 202 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + F E VN V +++ WERG G+T ACG+ ACA VA Sbjct: 203 VDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAVGVAG 262 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 +T+R V + GG L IEW + +N V+MTG A+ + G Sbjct: 263 VLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGS 305 >gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684] gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684] Length = 282 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D + + A+ D ++LI DA + Sbjct: 1 MKFIKMHGAGNDYVYVDGFQQDVHRPEELAVRISDRHFGVGSDGLILILPSD--CADARM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDG------SI 116 R+ N DGSE Q CGNG+RCV ++L + + T ET+ G+L D + Sbjct: 59 RMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQLTIETLAGVLSVDVTADTENPAISQV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V+MG+P L IP+ + VSMGNPH + +V+ D+ Sbjct: 119 TVNMGQPRLQRGQIPMTGP---QQDQALEVEIRVKNRTFTASCVSMGNPHCVVYVD-DVE 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 +D+A +G LL HP+F E +N+ + S + RTWERG G T ACG+ A A VA Sbjct: 175 QFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGASAVTVAG 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +T R + + GG L +E+ D+ V MTG A++ + G Sbjct: 235 FLTGRTQRTIRNHLRGGVLTLEYCDDETVMMTGPAEQVFTG 275 >gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756] gi|145847579|gb|EDK24497.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756] Length = 277 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ S+ +S D +++I+ A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCLQETIENPSELAKKISDWHYGVGSDGLIMINPSDKA--DFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGSISV 118 + N DGS + CGNG+RCV + + S + ET+ GI ++ + + V Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDYGLTDKTSISVETLAGIKYLDLTVEDGKVVLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P+L + +P+ +++ + + + VSMGNPHA+ F++ D+ + Sbjct: 119 DMGKPMLRPEEVPVVSEKEEVIDEPITVDGQEYRM----TCVSMGNPHAVVFIDQDVKEF 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G H F + VN V + +R WERG G T ACG+ ACA VA Sbjct: 175 PLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVAVACAL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG L I+W + N V+MTG A+ ++G+ Sbjct: 235 NGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGEWK 277 >gi|325123128|gb|ADY82651.1| diaminopimelate epimerase [Acinetobacter calcoaceticus PHEA-2] Length = 274 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 134/275 (48%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D+ + ++ I L+ FDQ++++ D RI N Sbjct: 1 MHGLGNDFMVVDLISQRAYLDTETIQRLADRHFGIGFDQLLIVEPPDLPEADFKYRIFNA 60 Query: 70 DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG+RC + S T +T GI+ + ++G + V+MG P Sbjct: 61 DGSEVEQCGNGVRCFARFVHERHLTTKTSITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + N VV+MGNPHA+ V D+ D+A G + Sbjct: 121 NEIPFVAEQPEALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVAGIGPQV 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN ++ + + LR +ERGVG T ACG+ ACA+ V+ +V Sbjct: 176 ESHKRFPERVNAGFMQIIDEKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270 >gi|163737876|ref|ZP_02145292.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107] gi|161388492|gb|EDQ12845.1| Diaminopimelate epimerase [Phaeobacter gallaeciensis BS107] Length = 267 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 95/271 (35%), Positives = 137/271 (50%), Gaps = 16/271 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN +V+D R +IT ++ FDQ+ +I DA + N Sbjct: 2 KMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVI---TKGDEDAHLTFYN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ R L + T RG+L+A++ +G SV+MGEP LDW+ Sbjct: 59 ADGSTSAACGNATRCIARHLLDESGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQLDWQ 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLA D ++ P MGNPH FFV+ + LA FG Sbjct: 119 DIPLAEDVDTLEL----------PIEGAPTATGMGNPHCTFFVD-NAEVIPLAEFGARYE 167 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP++ E N+ +A V + + L +R WERGVG+T A GS++CA+ VA+ T+R V + Sbjct: 168 HHPLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQI 227 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + GG L I+W + V+MTG +G Sbjct: 228 DLDGGTLWIDWRKDG-VWMTGPTMHVADGHF 257 >gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC 27560] gi|149735516|gb|EDM51402.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC 27560] Length = 277 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 145/283 (51%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG GN + ++ + + + D +++I+ A D + Sbjct: 1 MKFTKMEGCGNDYVYVNGFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPSDVA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILV----AKENRDGSISV 118 + N DGSE + CGNG+RCV +++ T ET+ GI ++++ ++ V Sbjct: 59 SMYNADGSEGKMCGNGIRCVAKYVYDNKMTDKTTITVETLSGIKTLVLNVEDDKVKTVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG PIL+ +P+ DK+ + + + VSMGNPHAI FV+ D+ Sbjct: 119 NMGSPILESAKVPVVSEKDKVIDEPVMVNNKEYRI----TCVSMGNPHAITFVD-DIDSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 D+ G + K +F E VN +V S + + +R WERG G T ACG+ ACASVVA Sbjct: 174 DIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACASVVACVL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T V+VK+LGG L IE++ D N V+MTG A+ + G+ + Sbjct: 234 NGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTGEFN 276 >gi|319778945|ref|YP_004129858.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9] gi|317108969|gb|ADU91715.1| Diaminopimelate epimerase [Taylorella equigenitalis MCE9] Length = 290 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 138/278 (49%), Gaps = 8/278 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M GIGN +V+D N+ S+ I A++ DQ++L+ + D RI N Sbjct: 1 MHGIGNDFVVLDGVSNFINVDSEIIRAIAHRQFGIGADQVLLVENPTHPEADFKYRIFNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV++CGNG RC V+F+ + R E G + N D +++VDMG P Sbjct: 61 DGSEVENCGNGARCFVQFIHDKHLSGRNPIKAEIATGTIELYRNEDKTVTVDMGCPTFKA 120 Query: 128 KLIPLARS---FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + F ++ + P+++ + +VSM NPHA+ V D+Y ++S G Sbjct: 121 SDVGFDSEGISFKNENQAQVWALPLSNGSVIEISLVSMANPHAVQIV-PDVYTAPVSSQG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F+ +N ++ S ++LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 PLIESHPYFANRINAGFMQIISENEINLRVYERGAGETFACGTGACAAVVSGIRRGLLKS 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V M GG + I + D V M G A +EG +DI Sbjct: 240 PVKVNMRGGSIEISY-DGEAVIMRGPATTVFEGVIDID 276 >gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L] gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L] Length = 279 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN + I D G + + + A+ D +++I + A D + Sbjct: 1 MKFVKMHGLGNDFVFIEDKEGKNKDFSQLAVKMCKRHTGIGADGLIVIVPSEKA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGS-----IS 117 RIIN DGSE + CGNG+RC +++ FT ET+ GI+ K ++ Sbjct: 59 RIINADGSEAEMCGNGIRCFAKYVYDHHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG+P + + IP+ + + + + + MG PH + +V+ D+ Sbjct: 119 INMGKPFPERRKIPMNGPSGTVINEPLTVDGKEYRITS----LLMGVPHTMIYVK-DVEQ 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL G HP F + N++ + ++ + TWERG G T ACG+ +CA V S Sbjct: 174 VDLPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCACAVGSF 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R V V++ G L I++ + + +V+MTG A + G+ + Sbjct: 234 LNGFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSYTGEWE 277 >gi|160885758|ref|ZP_02066761.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483] gi|156108571|gb|EDO10316.1| hypothetical protein BACOVA_03762 [Bacteroides ovatus ATCC 8483] Length = 269 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDATQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T GI + K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D + VSMGNPH + FVE D+ + Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITRIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP+F + N+ A++ + +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVNKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R V M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 225 GLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266 >gi|192288682|ref|YP_001989287.1| diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1] gi|229813241|sp|B3Q862|DAPF_RHOPT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|192282431|gb|ACE98811.1| Diaminopimelate epimerase [Rhodopseudomonas palustris TIE-1] Length = 293 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 129/288 (44%), Positives = 173/288 (60%), Gaps = 7/288 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V+ D+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTDRTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD--IKTGKWIKKNE 291 + + GG L IEW D +NHV MTG A+ E+EG+ D + G Sbjct: 246 EMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFDPALFAGALDPTGA 293 >gi|238897901|ref|YP_002923580.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465658|gb|ACQ67432.1| diaminopimelate epimerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 278 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 130/278 (46%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM +GN ++ID + ++ S+ I L+ FDQ++L+ +D Sbjct: 1 MRFSKMCSLGNDFVIIDAVTQNVHLRSEFICRLANRHTGIGFDQLLLLEPPNSPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC+ RF+ + +K+ T + I V+MGE Sbjct: 61 RIFNADGSEVFQCGNGARCLGRFVHLKGLTNKKNIQVSTKTVKMQIHLEEKNQICVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + IP + + V L VSMGNPH I VE L + Sbjct: 121 PDFFPQTIPF----RSKTIKKIYELDVAEQKLLCGI-VSMGNPHCIIQVEK-LDSDQIKL 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP F EG N+ ++ + + LR +ERG G T ACGS ACA+V Sbjct: 175 IGPLLGCHPSFPEGTNVGFMQIIDRKHIHLRVYERGAGETQACGSGACAAVSIGVQQDLL 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V V+ GG L I W H ++MTG A ++G + Sbjct: 235 DEKVHVEQKGGNLDICWKGTGHCLYMTGPADHVYDGVI 272 >gi|54293358|ref|YP_125773.1| diaminopimelate epimerase [Legionella pneumophila str. Lens] gi|81601542|sp|Q5WZH5|DAPF_LEGPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|53753190|emb|CAH14637.1| Diaminopimelate epimerase [Legionella pneumophila str. Lens] Length = 277 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE ++ + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|148361018|ref|YP_001252225.1| diaminopimelate epimerase [Legionella pneumophila str. Corby] gi|166225727|sp|A5IHM9|DAPF_LEGPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|148282791|gb|ABQ56879.1| diaminopimelate epimerase [Legionella pneumophila str. Corby] Length = 277 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE ++ + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|52840611|ref|YP_094410.1| diaminopimelate epimerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603548|sp|Q5ZYK6|DAPF_LEGPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52627722|gb|AAU26463.1| diaminopimelate epimerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 277 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE ++ + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIINHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|146337529|ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278] gi|166224245|sp|A4YKA5|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|146190335|emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS278] Length = 289 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 122/275 (44%), Positives = 172/275 (62%), Gaps = 4/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F KM GIGN+I+V+D+R +T D A+++ +DQ+M++ + +AFIRI Sbjct: 9 FVKMNGIGNEIVVLDLRDVKHVVTPDEARAVASR--VPYDQMMVLQRPRFDGTEAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCVV + + + S TFET G+L + +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPAPDLYTVDMGVPRFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHA+F+V++D+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVDNDVNSYDLERFGPL 186 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A++ + + +RTWERG GLT ACGSAACA+ VA+ L + NR V Sbjct: 187 LENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRANRLV 246 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG+ + Sbjct: 247 HMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFE 281 >gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902] gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902] Length = 355 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 86/288 (29%), Positives = 133/288 (46%), Gaps = 15/288 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + + + + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLDFAVAEPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DG+E + CGNG+RC+ R+ + ET G++ + +G Sbjct: 60 DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L+ IP N V MGNPH + VE DL Sbjct: 120 LRVDMGAPFLESASIPTTLE---PLAGLPRGALEIDGVPLNVASVGMGNPHVVVPVE-DL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +G L HP+F N+ +V + + L++R WERG G T ACG+ ACA++VA Sbjct: 176 SRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L + V + GG LLI W + V MTG A+ ++G + + Sbjct: 236 AVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDGVITPE 283 >gi|85714449|ref|ZP_01045437.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A] gi|85698896|gb|EAQ36765.1| diaminopimelate epimerase [Nitrobacter sp. Nb-311A] Length = 301 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 119/275 (43%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R ++T++ A+++ +DQ+M++ + +A +RI Sbjct: 20 FSKMNGIGNEIVVVDLRDSPASVTAEEARAVASPAGVPYDQLMVLQPPRTPGTEALVRIY 79 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L N G +VDMG P Sbjct: 80 NKDGSEANACGNGMRCVARQIFEASGKDALTFETRAGLLNCWRNSAPGLYTVDMGPPKFG 139 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V+ D+ +DL FG L Sbjct: 140 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD-DVNAHDLERFGPL 198 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERGVGLT ACGSAAC + VA+ L + R V Sbjct: 199 LENHPIFPERANITLAHIVDRDHIAMRTWERGVGLTKACGSAACGTAVAAARLKRAARIV 258 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 259 HMMLPGGDLTIEWRERDDHVLMTGPAVFEYEGTFD 293 >gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp] gi|166225744|sp|A4XNX4|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp] Length = 276 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ A FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K+ ET G++ + DG + V+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKTIRVETKSGVIELRVQNDGQVCVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L+ +P + +SMGNPHA+ V+ ++ + Sbjct: 122 APRLEPAQVPFQAE-----QAALTYRVDVEGQSVELAALSMGNPHAVLRVD-NVDSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW + V MTG A + +EG++ + Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276 >gi|316931776|ref|YP_004106758.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1] gi|315599490|gb|ADU42025.1| diaminopimelate epimerase [Rhodopseudomonas palustris DX-1] Length = 293 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 129/288 (44%), Positives = 172/288 (59%), Gaps = 7/288 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQSAPVTPADARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFAGSDQNGLTFETRAGLLNCWRGPADGFYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V+ D+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKRTERTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD--IKTGKWIKKNE 291 + + GG L IEW D +NHV MTG A+ E+EG+ D + G Sbjct: 246 DMTLPGGRLTIEWRDSDNHVLMTGGAEFEFEGRFDPALFAGALNPTGA 293 >gi|260174400|ref|ZP_05760812.1| diaminopimelate epimerase [Bacteroides sp. D2] gi|315922668|ref|ZP_07918908.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696543|gb|EFS33378.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 269 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T GI + K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D + VSMGNPH + FVE D+ + Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITRIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPKIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R V M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 225 GLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266 >gi|39933327|ref|NP_945603.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009] gi|81564373|sp|Q6ND59|DAPF_RHOPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|39652952|emb|CAE25694.1| diaminopimelate epimerase [Rhodopseudomonas palustris CGA009] Length = 293 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 128/288 (44%), Positives = 175/288 (60%), Gaps = 7/288 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T A++ +DQ+ML+ + + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAH--VPYDQLMLLQPARLSGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + S ++ TFET G+L DG +VDMGEP Sbjct: 67 NNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V+ D+ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMGNPHAIFWVD-DVNAYDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAAC++ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACSTAVAAARLKRTDRTV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD--IKTGKWIKKNE 291 + + GG L IEW + +NHV MTG A E+EG+ D + +G Sbjct: 246 EMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFDPALFSGALDPTGA 293 >gi|322509108|gb|ADX04562.1| dapF [Acinetobacter baumannii 1656-2] Length = 274 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 133/275 (48%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D+ + + I L+ FDQ++++ D RI N Sbjct: 1 MHGLGNDFMVVDLISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNA 60 Query: 70 DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG+RC + + T +T GI+ + ++G + V+MG P Sbjct: 61 DGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYPKFLP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP K N VV+MGNPHA+ V D+ D+A G + Sbjct: 121 NEIPFVAEEPKALYTLELANDQNISID----VVNMGNPHAVTIV-PDVLTADVAGIGPQV 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E VN +V + + LR +ERGVG T ACG+ ACA+ V+ +V Sbjct: 176 ESHKRFPERVNAGFMQVIDDKHVRLRVFERGVGETLACGTGACAAAVSGMRRGLLANSVE 235 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 236 VELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 270 >gi|160872224|ref|ZP_02062356.1| diaminopimelate epimerase [Rickettsiella grylli] gi|159121023|gb|EDP46361.1| diaminopimelate epimerase [Rickettsiella grylli] Length = 276 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 11/279 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 +F KM +GN +++D ++ I + FDQ++LI + S + R Sbjct: 4 EFIKMHLLGNDFVIVDTLQQPFKPSAKLIRKWAHRQRGIGFDQLLLIEKPRSQSKHFYYR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124 I N +G+EV CGNG CV R+L + + K+ T+ L G ++ ++G PI Sbjct: 64 IFNANGNEVAQCGNGALCVTRYLIEKKRYKNPIHLMTMNNRLELTMEESGKVTANLGLPI 123 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF- 183 D + IP + V+S+GNPH + V L L Sbjct: 124 FDPEKIPFINPSKAPIHPLETPFGR-----FDCCVLSLGNPHCVIQVNC-LEKAPLEDLG 177 Query: 184 -GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +P F +G NL + ++ + +DLR +ERGVG T ACGS ACA+V+A L++ Sbjct: 178 LYLNQHPYPYFPQGCNLELMKIRDPKQIDLRIYERGVGETQACGSGACAAVIAGRLLNRL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + V V + GG L + W +++ VF+ G + G +D Sbjct: 238 TKKVKVNLPGGLLTVRWESEHSPVFLRGTPTYVFRGSID 276 >gi|253567072|ref|ZP_04844523.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5] gi|251944196|gb|EES84705.1| diaminopimelate epimerase [Bacteroides sp. 3_2_5] Length = 269 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 131/285 (45%), Gaps = 21/285 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ AI + D ++LI A D Sbjct: 2 ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ + + T +T+ GI + + + +G Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + F VSMGNPH + FV+ D+ + Sbjct: 119 -------------TVTVDMGVPLETGTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRTVN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L+ G L KHP+F + N+ A++ ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LSEMGPKLEKHPLFPDRTNVEFAQIMGKNTIRMRVWERGSGITQACGTGACATAVAAHLT 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 225 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 269 >gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107] gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107] Length = 354 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 17/289 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R ++ + + + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLILEGRQDQLDVAISDPDPNWVRRICDRRFGVGGDGVILALPPQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DG+E + CGNG+RC+ R+ + ET G++ + +G Sbjct: 60 DGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNGQ 119 Query: 116 ISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG P L+ IP + R I N V MGNPH + V+ D Sbjct: 120 LRVDMGAPFLEATSIPTTLEPLGGLPRGSLEIDG----VPLNVASVGMGNPHVVVPVD-D 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L +G L HP+F N+ +V S L++R WERG G T ACG+ ACA++V Sbjct: 175 LSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGTGACATLV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 A+ L + V + GG LLI W V MTG A+ ++G + + Sbjct: 235 AAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDGVITPE 283 >gi|53713934|ref|YP_099926.1| diaminopimelate epimerase [Bacteroides fragilis YCH46] gi|81608423|sp|Q64SY7|DAPF_BACFR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52216799|dbj|BAD49392.1| diaminopimelate epimerase [Bacteroides fragilis YCH46] Length = 269 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 21/285 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ AI + D ++LI A D Sbjct: 2 ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ + + T +T+ GI + + + +G Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + F VSMGNPH + FV+ D+ + Sbjct: 119 -------------TVTVDMGVPLETDTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRIVN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLT 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 225 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 269 >gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605] gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605] Length = 368 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 136/285 (47%), Gaps = 15/285 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R N + + D ++L Q A Sbjct: 1 MLQFSKYQGLGNDFLIVEGRQGQLPDAISNPDPAWVRRICDRRFGVGGDGLILALPAQ-A 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 + +RI+N DGSE + CGNG+RC+ R+ + + ET+ G++ + DG Sbjct: 60 DGELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L + IP + + V MGNPH + V+ DL Sbjct: 120 LRVDMGPPFLSSEGIPTTL---MPEDGLPQGVLLLEGEQLKVAAVGMGNPHVVVPVD-DL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L HP F N+ +V + E L++R WERG G T ACG+ ACA++VA Sbjct: 176 ASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L + V + GG L+IEW D V MTG A+ ++G L Sbjct: 236 AVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDGVL 280 >gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] Length = 276 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 144/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN +V +N++ AI+ + D ++ I ++A D + Sbjct: 1 MEFTKMHGLGNDFIVFAGHQQLPENVSQLAIDLCNRFFGIGADGLVYILPSENA--DFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDG----SIS 117 RIIN DGSE + CGN +RCV +++ G+ + N ++ Sbjct: 59 RIINSDGSEAEQCGNAIRCVAKYVYDNGLTTNTDITIETIGAGVQQVQLNVKDGKVATVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPIL+ +P D++ + F VSMGNPH + +V+ D + Sbjct: 119 VDMGEPILEGLKVPTTVDADRVIAHAIEVDGREFSF----TAVSMGNPHCVIYVD-DAAN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +DL ++G L HPMF +N+ V S D+R WERG G T ACG+ ACA+VV+S Sbjct: 174 FDLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGACATVVSSV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T+R +V + GG L IEW + +NHV+MTG A + + G Sbjct: 234 LNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGTF 276 >gi|296105914|ref|YP_003617614.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy] gi|295647815|gb|ADG23662.1| diaminopimelate epimerase [Legionella pneumophila 2300/99 Alcoy] Length = 277 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE ++ + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|313901739|ref|ZP_07835167.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965] gi|313468001|gb|EFR63487.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 12/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + KM G+GN L +D D++ + A + D ++L+ +D Sbjct: 8 IRLTKMHGLGNNYLFLDGLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPPRDPGAR 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGS---- 115 +RI N DGSE + CGNG+RC+ R + R + F ET G + + + DG Sbjct: 68 FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRETEFVVETGAGPIRPRLHLDGHRVTG 127 Query: 116 ISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P L+ +IP+A ++ + + +SMGNPH + FV+ D Sbjct: 128 VTVDMGVPRLERGMIPMAGPAGEQAVEVPLEVEAGGERSVFTVTALSMGNPHCVVFVD-D 186 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L DL G HP F + VN RV + E + +R WERG G T ACG+ ACA V Sbjct: 187 LEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVWERGSGPTLACGTGACAVAV 246 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 A +T R V+V++ GG L +EW + HV+MTG A Sbjct: 247 AGALTGRTGRRVTVELPGGSLEVEWAGDGHVYMTGPAAYI 286 >gi|154492518|ref|ZP_02032144.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC 43184] gi|154087743|gb|EDN86788.1| hypothetical protein PARMER_02152 [Parabacteroides merdae ATCC 43184] Length = 274 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 14/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ N AI + D ++LI + A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMAFPVRNPEELAIRLSAPHTGIGSDGLVLIGSSKIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGN RC+ +++ + +K+ T ET+ GI + + Sbjct: 63 RIFNADGSEAMMCGNASRCIGKYVYDKRLTNKKNITLETLSGIKELQLTTRK-----LSG 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + + + I ++ V+SMGNPH + FVE D+ + +L Sbjct: 118 PHEEVTEVTVDMGCPVIGETALEIEAGDY--FYTGTVISMGNPHLVIFVE-DITNINLPV 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F N+ + S + + ++ WERG G+T ACG+ ACA+ VAS KT Sbjct: 175 IGPLLECHPLFPNRTNVEFVQALSTDEVRMKVWERGSGITQACGTGACATAVASAVRGKT 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L I W + + HV+MTG A K +EG+L+I Sbjct: 235 GRKTKVVMDGGPLTIHWDESSGHVYMTGGAVKVFEGELEI 274 >gi|119943833|ref|YP_941513.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] gi|166225746|sp|A1SQZ9|DAPF_PSYIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119862437|gb|ABM01914.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] Length = 275 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 94/279 (33%), Positives = 143/279 (51%), Gaps = 9/279 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID + ++ D I+ L+ FDQ+++I D +D Sbjct: 3 IQFSKMHGLGNDFMVIDNVTQNVFLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV+ CGNG RC RF+ + +++ T +G + K DG+I+VDMG+ Sbjct: 63 RIFNADGSEVEQCGNGARCFARFVKMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PIL+ +P ++ VVS+GNPH + V+ D+ + + + Sbjct: 123 PILEPAKVPFEA-----QKEEKTYILRVEDHTVLCGVVSIGNPHCVVLVD-DIDNAPVET 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F VN+ + S + LR WERGVG T ACG+ ACA+ V K Sbjct: 177 LGPLLENHERFPNKVNVGFLEIKSRDHARLRVWERGVGETLACGTGACAAAVVGQLQDKL 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 N ++++ GG L + W V MTG A ++G++ I Sbjct: 237 NPHCTIELPGGELRLFWQPGQSVKMTGTADFVFDGQIQI 275 >gi|92119035|ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] gi|122416839|sp|Q1QHJ3|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91801929|gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] Length = 290 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 117/275 (42%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F+KM GIGN+I+V+D+R +T++ A+++ +DQ+M++ + +AF+ I Sbjct: 9 FSKMNGIGNEIVVVDLRDRPAAVTAEEARAVASPGGVPYDQLMVLQPPRLPGTEAFVSIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + + TFET G+L + G +VDMG P Sbjct: 69 NNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPAPGLYTVDMGPPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V+ D+ +DL FG L Sbjct: 129 WRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD-DVNAHDLERFGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG G+T ACGSAACA+ VA+ L + +R V Sbjct: 188 LENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATAVAAARLKRADRVV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GGGL IEW + ++HV MTG A E+ G D Sbjct: 248 DMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFD 282 >gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL] gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL] Length = 278 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + A D I+L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNFLAKRMCHRHIGVGADGILLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117 RIIN DGSE + CGNG+RC +++ R K F ET+ GI+ + + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + D + + MG PH + FV+ D+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPE---SDAINTPIEVEGKEYKITSLLMGVPHTVLFVD-DVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L IEW D++ VFMTG A++ + G+ Sbjct: 235 LNGLTERKANVHLYFGTLEIEWQDDDTVFMTGPAEEVFVGE 275 >gi|54296402|ref|YP_122771.1| diaminopimelate epimerase [Legionella pneumophila str. Paris] gi|81602021|sp|Q5X822|DAPF_LEGPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|53750187|emb|CAH11579.1| Diaminopimelate epimerase [Legionella pneumophila str. Paris] Length = 277 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVATKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE ++ + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLELNNGNTVNLHAISIGNPHAVLLVE-NIDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|298293309|ref|YP_003695248.1| diaminopimelate epimerase [Starkeya novella DSM 506] gi|296929820|gb|ADH90629.1| diaminopimelate epimerase [Starkeya novella DSM 506] Length = 293 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 113/274 (41%), Positives = 159/274 (58%), Gaps = 3/274 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+I+V+D+R + AL+ +D FDQIM ++ + AF+RI Sbjct: 8 PFVKMNGLGNEIVVLDLRDAPLPVPPAEARALAREDVLPFDQIMALYPPKSEGTRAFVRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 IN DGSE +CGNG RC+ + R FE++ G+L +G I+ DMG P Sbjct: 68 INADGSEAGACGNGTRCIALYEAGRTGDNHVVFESVAGLLDCTVAPEG-ITADMGVPHFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA GP LR P VV++GNPHAIF+V D+ DL +G Sbjct: 127 WHDIPLAGPVADTRAIELQAGPAEAPVLRAPSVVNVGNPHAIFWV-HDIEAVDLGRYGPE 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+S A+V S + + L+ WERG GLT ACGSAACA+ V++ + T R V Sbjct: 186 LEHHPVFPERANISAAQVVSPDHIVLKVWERGAGLTKACGSAACAAAVSAARIGLTGRRV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V + GG L+I+W + ++H+ MTG A E++G+L Sbjct: 246 TVTLPGGDLVIDWRESDDHILMTGPAVFEFDGRL 279 >gi|209521421|ref|ZP_03270131.1| Diaminopimelate epimerase [Burkholderia sp. H160] gi|209498139|gb|EDZ98284.1| Diaminopimelate epimerase [Burkholderia sp. H160] Length = 307 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 137/285 (48%), Gaps = 9/285 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V+D N+T+ + AL+ DQ++L+ VD Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTTAQVRALANRHFGVGADQLLLVEKPTVEGVDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG EV+ CGNG RC V+F+ R ++S + +G + +G + VDMG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDRGLTDQRSVRVQVQKGTITLTMQDNGEVIVDMGT 122 Query: 123 PILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ D +L+P A + R+ + R VVSMGNPHA+ V+ D + + Sbjct: 123 PVFDPELVPFATKGLQGRREGADTLWPLDVNGTTRWMSVVSMGNPHAVQVVD-DAEAFPV 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + +H F + VN ++ + + LR +ERG G T ACG+ ACA+ A Sbjct: 182 LVEGPAIERHTRFPQRVNAGFMQIVNRNEIRLRVYERGAGETLACGTGACAAAAAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWH---DNNHVFMTGEAKKEWEGKLDIK 282 + V V GG L I W + M G A +EG++++ Sbjct: 242 LLDAPVLVHTHGGDLTITWDIAQPGTPLLMAGPAATVFEGEIELA 286 >gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23] gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23] Length = 268 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T GI + K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D + VSMGNPH + FVE D+ + Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITQIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R V M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 225 GLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEIE 266 >gi|307264792|ref|ZP_07546354.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920050|gb|EFN50262.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 274 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + AI D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALEN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R K ET+ G+++ + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGEVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MSNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLTS----LRVGVPHTIVFVE-SLDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G LL+EW ++N ++++G ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274 >gi|319899509|ref|YP_004159606.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73] gi|319403477|emb|CBI77057.1| Diaminopimelate epimerase [Bartonella clarridgeiae 73] Length = 284 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 129/284 (45%), Positives = 170/284 (59%), Gaps = 5/284 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GNKI+V DMR NIT A+ AL+ + THFDQIM IH D I I Sbjct: 4 PFSKMNGLGNKIIVADMRENTHNITLQAVLALAKNPQTHFDQIMTIHPSTKNETDFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ ++CGNG RCV+ +LT+ +SF ET GI+ K +G ISV+MG P D Sbjct: 64 WNADGSKAKACGNGTRCVIEWLTNHNLGESFQLETPAGIVEGKRQANGLISVNMGRPNFD 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P+A + GP L++ +VS GN HAIFFVE ++ H L +G Sbjct: 124 IKNMPIAYEIADTNHVEITAGP-----LKDASLVSFGNLHAIFFVESNIQHIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA VTS SL LRTWERG GLT ACG+AACAS VA+ T R + Sbjct: 179 LEHDPLFPERCNISIAFVTSRNSLILRTWERGAGLTKACGTAACASAVAAYRRGLTERRI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 +V +LGG L I + +++H+ MTG + E+ G L TG + K + Sbjct: 239 NVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLSPLTGDYKKDS 282 >gi|225023710|ref|ZP_03712902.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC 23834] gi|224943592|gb|EEG24801.1| hypothetical protein EIKCOROL_00574 [Eikenella corrodens ATCC 23834] Length = 282 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 144/281 (51%), Gaps = 7/281 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDA 62 +++ F KM G+GN +VID H + + I FDQ++L+ + Sbjct: 2 AVLKFTKMHGLGNDFMVIDGISQHFDPAAAPIAEWADRHRGIGFDQLLLVEVPPLPEAEF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV+ CGNG RC RF+ + + + T +G++V +G ++VDM Sbjct: 62 GYRIFNADGSEVEQCGNGARCFARFVHEKGLSRNRRIRVATAKGLIVLNLQENGLVTVDM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP L IP + + + +H ++ R V+MGNPHA+ V+ D++ + Sbjct: 122 GEPRLAAADIPFSPAPGEAADALWHEIGLDGASAR-FSCVNMGNPHAVLVVD-DVHCAPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G L +HP F E VN+ +V + LR +ERG G T ACG+ ACA+ VA Sbjct: 180 AEWGARLERHPQFPERVNVGFLQVLDTHHIRLRVFERGTGETQACGTGACAAAVAGMRAG 239 Query: 241 KTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V V + GG L IEW +NHV M+G A +EG + Sbjct: 240 LLARQGAVCVSLPGGDLQIEWAADNHVLMSGSAATVFEGTV 280 >gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200] gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200] Length = 274 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + AI D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALEN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R K ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MGNPIFEASKIPIKSDKQKFINEPVKIDGKVYKLTS----LRVGVPHTIVFVE-SLDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G LL+EW ++N ++++G ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLLVEWLEDNSIYLSGSVEEVFRGEIEL 274 >gi|218530898|ref|YP_002421714.1| diaminopimelate epimerase [Methylobacterium chloromethanicum CM4] gi|254767110|sp|B7KQM2|DAPF_METC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218523201|gb|ACK83786.1| Diaminopimelate epimerase [Methylobacterium chloromethanicum CM4] Length = 296 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 129/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI Sbjct: 8 RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV + + + T ET G++ K + S +VDM Sbjct: 68 YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPL F R +GP++ L +P VSMGNPHAIFFVE D YDL Sbjct: 128 GQPRLRWDEIPLTEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP+F E N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 RA V + GG L IEW ++HV MTG E EG D+ G Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293 >gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359] gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359] Length = 280 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 144/283 (50%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +DF KM G+GN + I D G + T+ A + D +++I D + A D + Sbjct: 1 MDFVKMHGLGNDFVFIEDKTGQDKDYTALARAMCNRHTGIGADGLIVIVDSRVA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ +K FT ET GI+ + N+ I+ Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQFTVETPAGIMEPEITVGADNKAKLIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG P + IP+ + ++ + + N + MG PH + +V+ D+ Sbjct: 119 INMGRPSFNRSEIPMEGADGRVLNEDLCVDGEN----WKVTSLLMGVPHTVTYVD-DVDT 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G L KH F + N++ A+ ++ +RTWERG G T ACG+ +C+ VAS Sbjct: 174 VDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSVAVASF 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 +T R V +++ G L IE+ ++ +V+MTG A + G Sbjct: 234 LNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTGTW 276 >gi|60682141|ref|YP_212285.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343] gi|60493575|emb|CAH08364.1| diaminopimelate epimerase [Bacteroides fragilis NCTC 9343] gi|301163620|emb|CBW23173.1| diaminopimelate epimerase [Bacteroides fragilis 638R] Length = 272 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 21/285 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ AI + D ++LI A D Sbjct: 5 ARAIQFTKMHGTGNDYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ + + T +T+ GI + + + +G Sbjct: 63 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + F VSMGNPH + FV+ D+ + Sbjct: 122 -------------TVTVDMGVPLETGTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRIVN 167 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 168 LSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLT 227 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 228 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 272 >gi|13473650|ref|NP_105218.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099] gi|21362484|sp|Q98EB6|DAPF_RHILO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|14024400|dbj|BAB51004.1| diaminopimelate epimerase [Mesorhizobium loti MAFF303099] Length = 294 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 148/286 (51%), Positives = 192/286 (67%), Gaps = 1/286 (0%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 FAKM GIGN+I+V DMRG D +T+ A AL+ D T FDQIM IHD + ++ I Sbjct: 6 PFAKMNGIGNEIIVADMRGRADQVTAAAALALNGDAATRFDQIMAIHDARTPGTAYYVDI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DG+ Q+CGNGMRCVV+ L + +K+FTFET GIL A+E+ DG+ISVDMG P Sbjct: 66 LNSDGTSAQACGNGMRCVVQALAAETGQKTFTFETRAGILNAREHADGTISVDMGMPHFG 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VSMGNPHAIF+V+ D++ Y+L FG L Sbjct: 126 WQEIPLAEEFRDTRMIELQIGPIDAPVLHSPSAVSMGNPHAIFWVDRDVWSYELERFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N++IA+VTS ES+ +RTWERG GLT ACGSAACASVVA+ +T R+V Sbjct: 186 LENHPIFPERANITIAQVTSPESMIIRTWERGAGLTKACGSAACASVVAAARTRRTGRSV 245 Query: 247 SVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 ++ GG L +EW DN+HV +TG A+ E+ G D TG W + E Sbjct: 246 NLLTPGGGTLHVEWLDNDHVILTGAAEWEFSGSFDPSTGTWARDTE 291 >gi|312878385|ref|ZP_07738293.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A] gi|311794840|gb|EFR11261.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A] Length = 278 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + S A D ++L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNSLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117 RIIN DGSE + CGNG+RC +++ R K F ET+ GI+ + + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPELILNEYGLVEKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + D + + MG PH + FV+ D+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPE---SDAINTSIEVDGKEYKITSLLMGVPHTVLFVD-DVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVIASN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L IEW D+ VFMTG A++ + G+ Sbjct: 235 LNGYTERKANVHLYFGTLEIEWQDSGTVFMTGPAEEVFVGE 275 >gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4] gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f] gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4] gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f] Length = 269 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 87/282 (30%), Positives = 130/282 (46%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTSQYPIADPAKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T GI + K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTRSGIKILKLHVEGKTVS- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D + VSMGNPH + FVE D+ + Sbjct: 119 -------------AVTVDMGSPLETEEIQWGGKYPFRSTKVSMGNPHLVTFVE-DITRIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP+F + N+ A++ S +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R V M GG + IEW++ + H+ MTG A K ++G+++ Sbjct: 225 GLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEIE 266 >gi|171464283|ref|YP_001798396.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193821|gb|ACB44782.1| Diaminopimelate epimerase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 284 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 133/285 (46%), Gaps = 15/285 (5%) Query: 11 MEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V++ + IT + L+ DQI+L+ + D RI N Sbjct: 1 MHGDGNDFIVLNGIDQDLSGITREQWQVLAHRQFGIGADQILLVENATRPDADFRYRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG EV+ CGNG RC VRF+ + E +L K + DG + VDMG PI + Sbjct: 61 ADGGEVEQCGNGSRCFVRFVQDHGLSSKNPLRVEVAHTVLTLKSHPDGQVEVDMGAPIFE 120 Query: 127 WKLIPLARSFD---KMDRDRFHIGPVNHLFLRNP--FVVSMGNPHAIFFVEDDLYHYDLA 181 + IP + ++ ++ +NH + V+SMGNPHA+ V D+ + Sbjct: 121 HRQIPFNADGLASVQEFQETLYVLSLNHPATHDGLVSVLSMGNPHAVQVVG-DVDSAPVL 179 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + + F + VN +V + + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 EEGPEIEQFAAFPKKVNAGYLQVINRNEIKLRVFERGAGETLACGTGACAAVVSGIRRGL 239 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281 + V V GG L+I W + V MTG A +EG+ +I Sbjct: 240 LDSPVKVNTRGGDLVIAWAGASEGVAQPVIMTGPAVTVFEGETEI 284 >gi|307302460|ref|ZP_07582217.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C] gi|307316210|ref|ZP_07595654.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|21362480|sp|Q92L46|DAPF_RHIME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|306898050|gb|EFN28792.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|306903130|gb|EFN33720.1| diaminopimelate epimerase [Sinorhizobium meliloti BL225C] Length = 301 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + A DA+I Sbjct: 5 VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + RK+F F T+ G+L AKE+ +G+ISVDMG+P Sbjct: 65 IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 125 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V +T R Sbjct: 185 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 244 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V+V + GG L IEW + ++HV MTG A+ EW G +D TG + + + Sbjct: 245 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 292 >gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1] Length = 292 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 19/297 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ + LS D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYIYVNCFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118 RI N DGSE CGN RC+ +++ + ++ T ET GI + +V Sbjct: 59 RIFNADGSEAMMCGNATRCIGKYVYEKGLTDKEDITLETNSGIRYLHLTAVNGVVEAVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ +L K IP+ D+ + VSMGNPHA+ FV D Sbjct: 119 DMGKAVLVPKDIPVNSDLDRFISQPVEADGR----TWSVTCVSMGNPHAVIFVG-DTDSL 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H +F + +N +V +L +R WERG G T ACG+ ACAS VA+ Sbjct: 174 DLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACASAVAAVL 233 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 + + + + GG L I + + V M G A+ +G++ ++I+K +++ Sbjct: 234 NGICPRDEEILIHLRGGDLTITYRSDETVIMKGPAEFICDGEVK---DEYIEKAKEN 287 >gi|163852139|ref|YP_001640182.1| diaminopimelate epimerase [Methylobacterium extorquens PA1] gi|229807499|sp|A9W6A5|DAPF_METEP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|163663744|gb|ABY31111.1| Diaminopimelate epimerase [Methylobacterium extorquens PA1] Length = 296 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 129/286 (45%), Positives = 166/286 (58%), Gaps = 8/286 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI Sbjct: 8 RFLKMHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV + + + T ET G++ K + S +VDM Sbjct: 68 YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL Sbjct: 128 GQPRLRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDL 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP+F E N+SIA VT +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 188 GRIGPLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLR 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 RA V + GG L IEW ++HV MTG E EG D+ G Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 293 >gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3] gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3] Length = 281 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 135/285 (47%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + I+ N ++ + D ++L+ A D + Sbjct: 3 LHFYKMQGIGNDYVYINAMETKVPNPSALSKTVSDRHFGIGSDGLILLLPSTVA--DVRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDG----SISV 118 ++ N DGSE + CGNG+RCV + KS T ET+ GI K + S+ V Sbjct: 61 QMFNADGSEGKMCGNGIRCVGKLAYELDICKSESMTVETLSGIKTLKLQVEDGKVSSVCV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P ++ + IP+ + +M + + + VSMGNPHA+ F + + Sbjct: 121 DMGSPSMEIEKIPVRYTERRMVEAPLTVNGTTY----SVTCVSMGNPHAVIFTDG-IDEM 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L G H +F E VN L +R WERG G T ACG+ ACA VVA+ Sbjct: 176 ELEKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAVVVAACL 235 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V + GG L I W DN+ V+MTG A+ + G ++I Sbjct: 236 TKRCPRGEDVDVLLRGGKLTIRW-DNDRVWMTGPAELVYTGDIEI 279 >gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068] gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068] Length = 280 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 81/283 (28%), Positives = 127/283 (44%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN + I+ + D ++ I + DA+ Sbjct: 1 MRFTKMQGAGNDYVYINCFAEQFPADPAEVARQMSDRHFGVGGDGVIYICPS-NQGADAW 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN------RDGSIS 117 +R+ N DGSE + CGNG+RCV +F+ + + G + + + + Sbjct: 60 MRMFNADGSESEMCGNGLRCVAKFVHDHGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PI++ IP + G + VSMGNPH + FV + Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPPVNATLEAGGRSFE----VTSVSMGNPHCVVFV-PEATD 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + PMF VN+ V S L RTWERG G T ACG+ A A VA Sbjct: 175 ELVLGIGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVCVAGV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +T R V++ +LGG L +EW++ +N ++ TG A + + G+ Sbjct: 235 LTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPAVEVFSGEW 277 >gi|308051402|ref|YP_003914968.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799] gi|307633592|gb|ADN77894.1| diaminopimelate epimerase [Ferrimonas balearica DSM 9799] Length = 269 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + ++ D I L+ FDQ++++ D D RI N Sbjct: 1 MHGLGNDFMVVDGVTQNLYLSPDKIRQLADRHLGIGFDQLLVVEPPYDPEQDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC RF+ + + T G LV + + ++V+MG P + Sbjct: 61 DGSEVEQCGNGARCFARFVRLKGLTHKNRIQVSTQGGPLVLDLDGEDRVTVNMGVPNFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P + ++ ++ P + + VSMGNPH + VE D+ + S G LL Sbjct: 121 ASLPFRAN----KVEKTYLLPTDVQTVLAG-AVSMGNPHCVIRVE-DIDSAPVESVGPLL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 +H F +GVN+ +V + + LR +ERG G T ACG+ ACA+ V V Sbjct: 175 ERHDRFPKGVNVGFMQVMNPNHIRLRVFERGAGETQACGTGACAAAVVGQFQGLLGDRVR 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V + GG L I W V+MTG A ++G++++ Sbjct: 235 VDLPGGSLHIRWAGEGKPVYMTGPAVHVYDGQIEL 269 >gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48] gi|122401301|sp|Q1I303|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48] Length = 276 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I + FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG + VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQVCVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D + VSMGNPH++ V+ D+ + Sbjct: 122 PPRFVPADIPF-----IADEQALSYPLEVDGQVHQIAAVSMGNPHSVLRVD-DVRTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAAAVAAIAQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V++ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276 >gi|329895689|ref|ZP_08271112.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088] gi|328922207|gb|EGG29561.1| Diaminopimelate epimerase [gamma proteobacterium IMCC3088] Length = 277 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 124/276 (44%), Gaps = 5/276 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN V+D+R +TS+ I FDQ++++ VD Sbjct: 3 IRFTKMHGLGNDFFVLDLRAQDVELTSERILAWSDRHRGVGFDQLLVLEPATQTGVDFKY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DGSEV+ CGNG RCV RF + F ET RG+L D + V MG P Sbjct: 63 RIFNADGSEVEHCGNGARCVARFAQRSSGQSDFVCETARGLLTLSVLDDQQVKVAMGIPT 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP ++ + + GNPHA+ +V + G Sbjct: 123 FKPSEIPFVADDAALNYNLPLYPDQASQIKVGALAI--GNPHAVVWVS-STAAAPVEELG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 +L HP F VN+ A ++LR +ERGVG T ACG+ ACA+ + Sbjct: 180 PILESHPRFPNRVNVGFAERVDEHEINLRVFERGVGETEACGTGACAAAIHGMLTQGLVS 239 Query: 245 AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 VSV + GG L I+W V MTG A ++G+L Sbjct: 240 PVSVHLPGGTLQIDWQGMGEQVIMTGPATFVYDGEL 275 >gi|148550337|ref|YP_001270439.1| diaminopimelate epimerase [Pseudomonas putida F1] gi|148514395|gb|ABQ81255.1| diaminopimelate epimerase [Pseudomonas putida F1] Length = 276 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SV+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP G L + VSMGNPHA+ V+ D+ + Sbjct: 122 PPRFIPAEIPFVADAQAPSYPLVVDG-----QLYSIAAVSMGNPHAVLRVD-DVSTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|15966992|ref|NP_387345.1| diaminopimelate epimerase [Sinorhizobium meliloti 1021] gi|15076265|emb|CAC47818.1| Probable diaminopimelate epimerase [Sinorhizobium meliloti 1021] Length = 306 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 1/288 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + A DA+I Sbjct: 10 VQFARMNGLGNKILVVDMRGRKDRVTPQAAIALNADPATEFDQIMAIHDPKSAGTDAWID 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + RK+F F T+ G+L AKE+ +G+ISVDMG+P Sbjct: 70 IVNSDGSMAQACGNGTRCVVQALAAETGRKAFLFHTVAGLLEAKEHDNGTISVDMGKPRF 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 130 GWDQIPLAEEFHDTRRIELQIGPIDAPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIAR+ S + +DLRTWERG GLT ACGSAACA+ V +T R Sbjct: 190 LLENHPIFPERANISIARIRSRQEMDLRTWERGAGLTLACGSAACAAAVNGARTGRTERM 249 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V+V + GG L IEW + ++HV MTG A+ EW G +D TG + + + Sbjct: 250 VTVNVPGGPLKIEWRERDDHVIMTGPAEWEWSGTVDPVTGIFARNEPE 297 >gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379] gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379] Length = 278 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 125/282 (44%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ + AI + + D ++LI A D + Sbjct: 1 MKFTKMQGAGNDYVYVNCFEETVADPRQVAIQVSNRNFGIGSDGLILIMPSTTA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA-------KENRDGSIS 117 R+ N DGSE + CGNG+RCV ++ G + + + + Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAFDHGIVSKKEITAETGAGILALRLIAGSDGKIAKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P L IP+ N SMGNPH + FV+ D+ Sbjct: 119 VNMGPPRLARSEIPMRGDAAPQVVGEQLTIL---DRTFNITCASMGNPHCVIFVD-DVAG 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + ++++G L+ H +F N+ ++ S + RTWERG G T ACG+ + A A Sbjct: 175 FPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSSAVTAACV 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T + + + GG L +EW ++ +++MTG A + + G++ Sbjct: 235 LNGLTEKRILNHLSGGDLEMEWAEDGNIYMTGPAVEVFSGEI 276 >gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A] gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A] Length = 279 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 139/282 (49%), Gaps = 11/282 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G+GN ++ID R + + S + + D ++ + D D Sbjct: 1 MYFFKYQGLGNDFILIDNRSSSELLLSSGQILKMCNRHFGIGADGVIFLL-SGDKVSDYG 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVD 119 + I N DGSE + CGNG+RC++ F+++ K + +T+ GI+ A+ + V+ Sbjct: 60 MHIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVE 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P+ K IP S D + V+MGNPH I FVE D + Sbjct: 120 MGTPLFLNKQIPTTLS--DKDNTVINYPLEIEKKNWLVTCVNMGNPHCITFVE-DTNLIN 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L H F E +N + L +R WERG G T ACG+ ACASVVA Sbjct: 177 LEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAGVIT 236 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 ++ R +V++ GG LLIEW ++ N V+MTG A++ + G+ + Sbjct: 237 NRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIGEYN 278 >gi|330501237|ref|YP_004378106.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01] gi|328915523|gb|AEB56354.1| diaminopimelate epimerase [Pseudomonas mendocina NK-01] Length = 276 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H ++ A FDQ++++ VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET G++ + DG + V+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKKVIRVETKSGVIELRVQNDGQVCVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + +P + + +SMGNPHA+ V+ + + Sbjct: 122 APRLQPEQVPFQAE-----QAALNYRVDVDGQSVELAALSMGNPHAVLRVD-NTDDAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G L HP F + VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAAAVAAIRQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + V +++ GG L IEW + V MTG A + +EG++ + Sbjct: 236 MDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276 >gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51] gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51] Length = 276 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D + L + VSMGNPHA+ V+ D+ + Sbjct: 122 PPRFTPAEIPFVA-----DAQALNYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVRTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276 >gi|33594001|ref|NP_881645.1| diaminopimelate epimerase [Bordetella pertussis Tohama I] gi|33599182|ref|NP_886742.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50] gi|33564075|emb|CAE43343.1| diaminopimelate epimerase [Bordetella pertussis Tohama I] gi|33575228|emb|CAE30691.1| diaminopimelate epimerase [Bordetella bronchiseptica RB50] gi|332383418|gb|AEE68265.1| diaminopimelate epimerase [Bordetella pertussis CS] Length = 303 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 133/292 (45%), Gaps = 12/292 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M +F KM G GN +V+D +T + AL+ DQI+L+ A D Sbjct: 8 MWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFR 67 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC VRF+ + R E + G++V E D ++VDMG Sbjct: 68 YRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMG 127 Query: 122 EPILDWKLIPLARSF-------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 D +P + + P V++ NPHA+ V+ D Sbjct: 128 STRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVD-D 186 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ HP F+ VN+ +V + LR +ERG G T ACG+ ACA+V Sbjct: 187 VDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVA 246 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A + V V GG L ++W+ + MTG A + G++DI + Sbjct: 247 AGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDIDRLVF 297 >gi|255597224|ref|XP_002536724.1| Diaminopimelate epimerase, putative [Ricinus communis] gi|223518756|gb|EEF25659.1| Diaminopimelate epimerase, putative [Ricinus communis] Length = 271 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 136/277 (49%), Gaps = 10/277 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G+GN +V+D +T A+ L+ DQ++L+ + +D RI N Sbjct: 1 MQGLGNDFVVLDGVRQSIELTESAVRQLADRHFGIGCDQLLLVEKSDRSDIDFRYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC VRF+ + + ET +GI++ + +G ++VDMG P+ D Sbjct: 61 DGSEVEQCGNGARCFVRFVHDQGLTDKHEIRVETAKGIIMPRLEANGLVTVDMGAPVFDP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP D+ + +SMGNPHA+ VE ++ + + G L+ Sbjct: 121 SEIPF-----DSDQPALTYPLDLDGNVVEISAISMGNPHAVQVVE-NIETAPVETQGPLI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F VN +V + LR +ERG G T ACG+ ACA+ VA + V+ Sbjct: 175 EHHQRFPNRVNAGFMQVVDRSHIRLRVYERGAGETLACGTGACAAAVAGMTRGLLDHTVT 234 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKT 283 V GG L+I+W H V MTG A + G++++ Sbjct: 235 VSTRGGDLVIQWQGYGHSVMMTGPAVVVFSGEIELGA 271 >gi|315121875|ref|YP_004062364.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495277|gb|ADR51876.1| diaminopimelate epimerase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 289 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 213/288 (73%), Positives = 238/288 (82%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ SMV FAKMEGIGNKILV+DMR DNIT +AIN LST+DN FDQIM IH+ Q+ Sbjct: 1 MQESMVGFAKMEGIGNKILVVDMRDRSDNITLEAINFLSTNDNFPFDQIMAIHNSQNKLA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFIRIIN DGSE QSCGNGMRCVVRFL+S+ K+K+F FETIRGIL AKEN DGSISVDM Sbjct: 61 DAFIRIINRDGSEAQSCGNGMRCVVRFLSSKTKKKTFIFETIRGILQAKENDDGSISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEPILDW+ IPLA+ FD D +F+IGP+N+ FLR+P +VSMGNPHAIFFVEDD+Y YDL Sbjct: 121 GEPILDWQHIPLAKPFDDTDSAQFYIGPINNSFLRSPSIVSMGNPHAIFFVEDDIYRYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + FG LL + MF EGVNLSIARVTS+ SLDLRTWERG GLTAACGSAACASVVAS Sbjct: 181 SGFGKLLENNFMFPEGVNLSIARVTSISSLDLRTWERGAGLTAACGSAACASVVASARSG 240 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 T+R VSV MLGG LLIEWH NNHVFM+G A K+W+G LDIKTGKW K Sbjct: 241 NTDRIVSVNMLGGELLIEWHHNNHVFMSGGADKQWDGNLDIKTGKWTK 288 >gi|33594907|ref|NP_882550.1| diaminopimelate epimerase [Bordetella parapertussis 12822] gi|33564983|emb|CAE39930.1| diaminopimelate epimerase [Bordetella parapertussis] Length = 303 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 133/292 (45%), Gaps = 12/292 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M +F KM G GN +V+D +T + AL+ DQI+L+ A D Sbjct: 8 MWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATQADADFR 67 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC VRF+ + R E + G++V E D ++VDMG Sbjct: 68 YRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMG 127 Query: 122 EPILDWKLIPLARSF-------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 D +P + + P V++ NPHA+ V+ D Sbjct: 128 STRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAGLPRSVAISTVAISNPHAVQVVD-D 186 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G L+ HP F+ VN+ +V + LR +ERG G T ACG+ ACA+V Sbjct: 187 VDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTGACAAVA 246 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A + V V GG L ++W+ + MTG A + G++DI + Sbjct: 247 AGVRRGLLDSPVRVHTRGGMLTVDWN-GERLRMTGPAISVFSGQVDIDRLVF 297 >gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 285 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 137/287 (47%), Gaps = 14/287 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGC---HDNITSD--AINALSTDD-NTHFDQIMLIHDFQDA 58 ++ F K +G+GN ++ID R ++ +T+D + + D I+L+ + + Sbjct: 3 IIKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQNSER- 61 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDGS 115 + ++I N DGS + CGNG+RC++++L + + +F ET+ G L Sbjct: 62 GANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGDH 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MG P + K IP S + ++ + N + + MGNPH + ++ + Sbjct: 122 IRVNMGSPSFEPKAIPTTLSPNNLNIPEGTVTIKNENIT--MYGIGMGNPHMVIILK-SI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G F N+ V ++ + ++ WERG G T ACG+ ACA + Sbjct: 179 EDLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGACACLAV 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + L TN V + GG L I+W + + ++MTG A+ + G+L I Sbjct: 239 TSLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285 >gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102] gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102] Length = 364 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 127/285 (44%), Gaps = 15/285 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN---ITSDAI---NALSTDDNTHFDQIMLIHDFQDA 58 M+ F+K +G+GN L+++ R + D + D ++L Q Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQ-G 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGS 115 D +RI N DGSE + CGNG+RC+ RF K + ET G++ + DG Sbjct: 60 QGDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQ 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + VDMG P L+ IP V MGNPH + VE DL Sbjct: 120 LRVDMGAPFLEPSSIPTTLPL---VDGLARGSADLADRALEVAAVGMGNPHVVVPVE-DL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++G L H +F N+ +V + L++R WERG G T ACG+ ACA++VA Sbjct: 176 NAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACGTGACATLVA 235 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 + L + V + GG L I W + V MTG A ++G L Sbjct: 236 AVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDGVL 280 >gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1] gi|189082837|sp|B0KQ41|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1] Length = 276 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D L + VSMGNPHA+ V+ D+ + Sbjct: 122 PPRFIPAEIPFVA-----DAQALSYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVRTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276 >gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409913|gb|ABP66917.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 278 Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + A D ++L+ + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDTRGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + + + N + + MG PH I FV+ D+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L I+W D++ VFMTG A++ + G+ Sbjct: 235 LNGLTERKANVHLYFGTLEIQWQDDDTVFMTGPAEEVFVGE 275 >gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a] gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a] Length = 277 Score = 208 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + + T AI D ++++ + D + Sbjct: 1 MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPS--NTCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGNG+RC + + + +FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + K IP+ + DK+ + + V +G PH FV+ D+ Sbjct: 119 DMGKPFFNSKDIPMNVTMDKV----IDVDLDVNGETVTVSSVLLGVPHTEVFVD-DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + +RTWERG G T ACG+ +CAS V S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSCASAVMSHK 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I+ Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277 >gi|257095703|ref|YP_003169344.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048227|gb|ACV37415.1| Diaminopimelate epimerase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 276 Score = 208 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 134/280 (47%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T+ + L+ DQI+L+ +D Sbjct: 3 MPFVKMHGLGNDFVVLDGVRQSVVLTAPQLRHLADRHFGIGCDQILLVEPASQPGIDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG RC VRF+ + ++ ET+ G++ + DG+++VDMG Sbjct: 63 RIFNADGGEVEQCGNGARCFVRFVHEQGLTAKREIRVETMGGVIGPRLEDDGTVTVDMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ IP + + V MGNPHA+ V D+ + Sbjct: 123 PVFASAQIPFVAA-----TEDLVQTLRVADEDIAITAVGMGNPHAVQVV-ADVDLAPVER 176 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L+ HP F + VN +V ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 177 QGPLIEAHPRFPQRVNAGFMQVLDRHTIRLRVFERGAGETLACGTGACAAAVAGIARGLL 236 Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 + V V GG L I W+ + V MTG A ++G++++ Sbjct: 237 DSPVRVATRGGELTIAWNGHATPVLMTGPAVTVFKGEIEL 276 >gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] Length = 276 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +IT A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRNDGQISVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP S + VSMGNPHA+ V +D+ + + Sbjct: 122 APRLVPADIPFQAS-----EQAASYALDVEGQSVDIAAVSMGNPHAVLRV-NDINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276 >gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1] Length = 276 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D L + VSMGNPHA+ V+ D++ + Sbjct: 122 PPRFIPAEIPFVA-----DAQALSYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVHTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|110678169|ref|YP_681176.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114] gi|109454285|gb|ABG30490.1| diaminopimelate epimerase [Roseobacter denitrificans OCh 114] Length = 280 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 139/275 (50%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +IT AL FDQ+ LI + + + Sbjct: 12 LPFMKMHGLGNDFVVLDARRRSMDITPRFAQALGHRHTGVGFDQLALITNTKTG---VHL 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ ++ ++ T T RG+L A +G SV+MG P Sbjct: 69 AFFNADGSVSSACGNATRCIADYIMAQTGASDMTLSTDRGVLAACRAANGQTSVNMGAPQ 128 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLAR D ++ P MGNPH FFV+ D+ D+A G Sbjct: 129 LDWTEVPLAREMDTLEL----------PIEGTPTATGMGNPHCTFFVD-DVMQTDVAKLG 177 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F + N+ A +T +++ +R WERGVG+T A GS++CA VA+ T R Sbjct: 178 AELEHHELFPQRTNVQFASITGPDTIRMRVWERGVGMTLASGSSSCAVAVAAARRGLTGR 237 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I+W ++ V+MTG + + G L Sbjct: 238 KVQVDLDGGRLEIDWREDG-VWMTGPTQHVFSGTL 271 >gi|153008262|ref|YP_001369477.1| diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188] gi|166225740|sp|A6WXE4|DAPF_OCHA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|151560150|gb|ABS13648.1| Diaminopimelate epimerase [Ochrobactrum anthropi ATCC 49188] Length = 300 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 153/286 (53%), Positives = 196/286 (68%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM G+GN+I+V DMRG D IT +A L+ D T FDQIM IHD + A D +I II Sbjct: 7 FAKMNGLGNQIIVADMRGRADRITPEAAIRLAGDSETAFDQIMAIHDPRTAGTDNYIAII 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG+E Q+CGNG RCVV+ L + R++FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 67 NCDGTEAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 126 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA F +GP++ L +P V SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 127 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS E++DLRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 187 EHHPIFPERANISIAHVTSPETIDLRTWERGAGLTRACGSAACAAAVSAVRTRRTGRTVT 246 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 V + GG L IEW D++HV MTG A+ E+ G D TG+W + ++D Sbjct: 247 VNVPGGPLRIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDAQND 292 >gi|91974994|ref|YP_567653.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5] gi|123749435|sp|Q13DT7|DAPF_RHOPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91681450|gb|ABE37752.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisB5] Length = 293 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 126/275 (45%), Positives = 170/275 (61%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T D A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--LPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R + + ++ TFET G+L DG +VDMGEP Sbjct: 67 NNDGSEAGACGNGMRCVARQMFASTDKQGLTFETRAGLLNCWRGPADGLYTVDMGEPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 WK IPLA F IGP++ L P VVSMGNPHAIF+V+ D+ +DL FG L Sbjct: 127 WKDIPLAEEFRDTRSIELQIGPIDAPLLHTPSVVSMGNPHAIFWVD-DIEAHDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + +R V Sbjct: 186 LENHPIFPERANITLAHIVDRDHITMRTWERGAGLTRACGSAACATAVAAARLKRADRVV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L I W + +NHV MTG A E+EG+ D Sbjct: 246 EMTLPGGQLSIAWRESDNHVLMTGGATFEFEGRFD 280 >gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645] gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645] Length = 283 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 87/288 (30%), Positives = 132/288 (45%), Gaps = 16/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63 + F KM GIGN + ++ + I L D ++LI + A DA Sbjct: 1 MRFTKMHGIGNDYVYVNCFAEQLPAAPETIAPLVSDRHFGIGGDGLILITPSEVA--DAR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD------GSIS 117 +R+ N DGSE + CGNG+RCV +++ K T + G V + + Sbjct: 59 MRMFNADGSESEMCGNGLRCVAKYVFDHDIAKKETLKLETGAGVLTVQIETENGLARQVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL+ K IP + + + I + + VSMGNPH + FVE Sbjct: 119 VNMGQPILEGKKIPTIFDSNPVVNQKIEIAGQS----FDVTCVSMGNPHCVIFVEK-ATD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G + + F VN+ V S + RTWERG G T ACG+ A A VA Sbjct: 174 ELVLKIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAVCVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTG 284 +T R + +LGG L +EW++ +N V+ TG A + + G+ + Sbjct: 234 LTGRTKRKILNHLLGGDLQLEWNEADNCVYKTGGATEVFTGEWMLPAL 281 >gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440] gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440] Length = 287 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 13 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 72 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 73 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 132 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D + L + VSMGNPHA+ V+ D+ + Sbjct: 133 PPRFIPAEIPFVA-----DAQALNYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVQTAPVH 186 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 187 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 246 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 247 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287 >gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia stuttgartiensis] Length = 277 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 13/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ +S D ++LI + A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFHEVVEDPVGLSKKISDRHFGVGSDGLILILPSEIA--DCKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE----NRDGSISV 118 RI N DGSE Q CGNG+RCV +++ +++ T ET+ GI + R S V Sbjct: 59 RIFNADGSEAQMCGNGIRCVAKYVYDHALVRKNPLTVETLAGIKTIELYTKNERVCSARV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P L IP+ + ++ + + +N VSMGNPH + FV+ DL Sbjct: 119 NMGRPKLMRPEIPMVGAETQVVDE---MLVLNENTSFRVTCVSMGNPHCVIFVD-DLKQL 174 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G + H +F E N+ +V + + TWERG G+T ACG+ A A VA Sbjct: 175 HIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGASAVCVAGVL 234 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + T R + + GG L +EW ++ +V+MTG A + + G+ Sbjct: 235 NNLTERKLLAHLPGGDLELEWVEDENVYMTGAAAEVFTGEW 275 >gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9] gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9] Length = 274 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 147/282 (52%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + A+ D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALEN-VDYSELAVKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R K++ T ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMTVETLAGVIMPEVFVKNGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVE-SLDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K +FS+G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G L +EW ++N ++++G+ ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274 >gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 274 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 142/282 (50%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +VI+ + + A D ++++ D +R Sbjct: 1 MKFTKMHGLGNDFIVIEALEN-VDYSELAAKLCDRHFGIGADGLLVVEPS--GIADIRMR 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVD 119 I N DGSE + CGNG RC +++ R K ET+ G+++ + + S+ V Sbjct: 58 IFNADGSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVKNGKVESVKVY 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG PI + IP+ K + I + + +G PH I FVE L Sbjct: 118 MGNPIFETSKIPIKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVE-SLDENM 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L Sbjct: 173 IKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACASAVASAVL 232 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V+V G L +EW ++N ++++G+ ++ + G++++ Sbjct: 233 GKTERNVNVHFKAGKLFVEWLEDNSIYLSGKVEEVFRGEIEL 274 >gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47] gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47] Length = 278 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + A D I+L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS-----IS 117 RIIN DGSE + CGNG+RC +++ R K F ET+ GI+ + + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFSKYVFERGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + D + + MG PH + FV+ D+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPE---SDAINTSIEVEGKEYKITSLLMGVPHTVLFVD-DVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIASN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T + V+V + G L IEW D+ VFMTG A++ + G+ Sbjct: 235 LNGFTEKKVNVHLYFGMLEIEWQDDGTVFMTGPAEEVFVGE 275 >gi|32171422|sp|Q88CF3|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 276 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+V DG +SVDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D + L + VSMGNPHA+ V+ D+ + Sbjct: 122 PPRFIPAEIPFVA-----DAQALNYPLEVDGQLHSIAAVSMGNPHAVLRVD-DVQTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276 >gi|170719431|ref|YP_001747119.1| diaminopimelate epimerase [Pseudomonas putida W619] gi|229813251|sp|B1J1W0|DAPF_PSEPW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169757434|gb|ACA70750.1| Diaminopimelate epimerase [Pseudomonas putida W619] Length = 276 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG + VDMG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQVCVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP D + L + VSMGNPHA+ V+ D+ + Sbjct: 122 PPRFIPAEIPFVA-----DEQALNYPLEVDGELHSIAAVSMGNPHAVLRVD-DIRTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F + VN +V +LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 GLGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 + VS+ + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPVSLDLPGGRLNIEWAGPGTSVLMTGPAVRVYEGQVRL 276 >gi|254438027|ref|ZP_05051521.1| diaminopimelate epimerase [Octadecabacter antarcticus 307] gi|198253473|gb|EDY77787.1| diaminopimelate epimerase [Octadecabacter antarcticus 307] Length = 271 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 140/275 (50%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 V F KM G+GN +VID R +T + A++ FDQ+ ++ + A D + Sbjct: 9 VPFMKMHGLGNDFVVIDARDGVLRVTDAIVMAMADRHRGVGFDQLAVMK--KRADADVHL 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+ +CGN RC+ R + + T T RGIL+A++ G S++MG P Sbjct: 67 TFYNADGTTAGACGNATRCIARHIMDETTKTDVTLTTDRGILLAQDAGGGMTSINMGLPQ 126 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W+ IPLAR D P MGNPH FFVE D DLA+ G Sbjct: 127 LTWQEIPLARDVDLDAL----------PINGAPMATGMGNPHCTFFVE-DAEAIDLAAMG 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP++ + N+ A + + L +R WERGVG+T A GS++CA+ VA+ T R Sbjct: 176 ALIEHHPIYPQRTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRKGLTGR 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V + + GG + I+W D+ V+MTG + G Sbjct: 236 SVRIDLDGGTIHIDWRDDG-VWMTGPTAHVFSGVW 269 >gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. 2250] gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 276 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP ++ R + N VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPFEAP-EQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str. 1704B] Length = 276 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 LDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|86747485|ref|YP_483981.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2] gi|123409040|sp|Q2J390|DAPF_RHOP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86570513|gb|ABD05070.1| diaminopimelate epimerase [Rhodopseudomonas palustris HaA2] Length = 293 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 126/275 (45%), Positives = 173/275 (62%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +T D A++ +DQ+ML+ + +AF+RI Sbjct: 9 FAKMNGIGNEIVVVDLRDQPAPVTPDDARAVAAH--VPYDQLMLLQPARLPGTEAFVRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV R L + ++ TFET G+L +G +VDMG P Sbjct: 67 NNDGSESGACGNGMRCVARQLFAGSDQQGLTFETRAGLLNCWRGPAEGLFTVDMGAPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VVSMGNPHAIF+V+ D++ YDL FG L Sbjct: 127 WQDIPLAEEFRDTRGIELQIGPIDAPILHTPSVVSMGNPHAIFWVD-DIHAYDLGQFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 186 LENHPIFPERANITLAHIVDRQHITMRTWERGAGLTRACGSAACATAVAAARLRRTDRIV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A+ E+EG+ D Sbjct: 246 EMTLPGGKLTIEWREGDDHVLMTGGAELEFEGRFD 280 >gi|27905004|ref|NP_778130.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839276|sp|P59582|DAPF_BUCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|27904402|gb|AAO27235.1| diaminopimelate epimerase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 286 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 142/285 (49%), Gaps = 11/285 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDAS 59 +S + F+KM G+GN ++I+ +TS+ I LS FDQ++L+ + ++ + Sbjct: 8 KSVKIKFSKMHGLGNDFIIINAMMQKTFPVTSNIIQNLSNRYTGIGFDQLLLVENSKNVN 67 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSIS 117 +D RI N +G+EV CGNG RC F+ + K T T L+ +G++ Sbjct: 68 IDFHYRIFNANGTEVSQCGNGARCFALFVLLKKLTKKRTLYVSTNTTTLILNVLNNGNVC 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P K I + + + H + + N +VS+GNPH I +V ++L Sbjct: 128 VDMGVPCFKLKNI----FGENIIENSLHSIKFVNKII-NYDLVSIGNPHCIIYV-NNLKK 181 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y + G L+ H +F EG+N++ V S + LR +ERGVG T ACGS ACASV Sbjct: 182 YPVKKIGFYLSTHKIFPEGINVNFVEVLSKNEIALRVYERGVGETLACGSGACASVALGI 241 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 V V +L G L I W ++MTG A ++G + Sbjct: 242 QQGLLFNEVQVNLLNGILKINWKGGSEKLYMTGPAVHVYDGYFYL 286 >gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 276 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFAPEDIPFQAA-----QQATRYSVEVDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276 >gi|254454521|ref|ZP_05067958.1| diaminopimelate epimerase [Octadecabacter antarcticus 238] gi|198268927|gb|EDY93197.1| diaminopimelate epimerase [Octadecabacter antarcticus 238] Length = 260 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 97/273 (35%), Positives = 140/273 (51%), Gaps = 15/273 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN +VID R +T + A++ FDQ+ +I DA DA + N Sbjct: 2 KMHGLGNDFVVIDARDGVVRVTDAIVMAMADRHRGIGFDQLAVITKRDDA--DAHLTFYN 59 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS +CGN RC+ R++ + T T+RGIL+A + G S++MG+P L W+ Sbjct: 60 SDGSIAGACGNATRCIARYIMDETTKTDLTLTTVRGILLAHDAGGGMTSINMGQPQLTWQ 119 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPLAR D P MGNPH FFVE D DLA+ G L+ Sbjct: 120 EIPLARDVDLDAL----------PIDGAPMATGMGNPHCTFFVE-DAEEVDLAAMGALIE 168 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 HP++ N+ A + + L +R WERGVG+T A GS++CA+ VA+ T R V + Sbjct: 169 HHPLYPARTNVQFAHLVGPDHLRMRVWERGVGVTLASGSSSCATAVAAHRRGLTGRRVRI 228 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + GG + I+W ++ V+MTG + G + Sbjct: 229 DLDGGTIHIDWRNDG-VWMTGPTAHVFSGVWYL 260 >gi|319785869|ref|YP_004145344.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1] gi|317464381|gb|ADV26113.1| diaminopimelate epimerase [Pseudoxanthomonas suwonensis 11-1] Length = 281 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 129/278 (46%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G GN +V+D+R + L+ DQI+ I + A A Sbjct: 7 LRFSKMHGAGNDFVVLDLRDGSPPPDAALAARLADRHRGVGCDQILTIEPPRSAGAVAAY 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVDMGE 122 I N DGS CGNG RCV +L + SF ++ GI + DG +VDMG Sbjct: 67 GIWNADGSPSGQCGNGARCVAAWLVRAGAARGESFVIDSPAGIHQVQALGDGRYAVDMGA 126 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P +PLA + + +F VSMGNPHA+ V D+ D+A Sbjct: 127 PRFAPAQVPLAGFGAEAAEYTLELDGRRVVFG----AVSMGNPHAVIEVG-DIDAVDVAG 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L F + VN+ A+V + + LR +ERGVG T ACGS ACA+V + + Sbjct: 182 TGRALQASAAFPQSVNVGFAQVLAPGHIRLRVYERGVGETLACGSGACAAVASLVRRGRI 241 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R +V + GG L I W ++ + M G A +EG+ Sbjct: 242 AREATVSLPGGDLRIGWAGEDASIIMAGPAAFVFEGEW 279 >gi|332296028|ref|YP_004437951.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796] gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796] Length = 282 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 135/286 (47%), Gaps = 14/286 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCH----DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN +++ +N + D ++L+ + A D Sbjct: 1 MKFYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPSEKA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGS---- 115 +RI N DGSE + CGNG+RC + E GI+V + R Sbjct: 59 LKMRIFNADGSEAEMCGNGIRCFAKLAKDMNIVNKDKIEVETLAGIIVPEIIRSDDKNSL 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MG P L + IP+ F+ D +N N VSMGNPH + F++ D+ Sbjct: 119 IRVNMGTPNLKPESIPI-LGFEGKDSVINQRIQINDKTFLNVTCVSMGNPHCVIFMDYDI 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ + + F + N+ ARV S ++LR WERGVG T ACG+ ACA+ VA Sbjct: 178 KNFPIEGIAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGACATAVA 237 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + TN V++ + GG L IE+ + N+VFMT A +EG ++I Sbjct: 238 AKLNGFTNGNVNIHLPGGILHIEY-ETNNVFMTATATLVFEGIIEI 282 >gi|237797830|ref|ZP_04586291.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020680|gb|EGI00737.1| diaminopimelate epimerase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 276 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPTNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFAPQEIPFQAA-----EQASSYSVELDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGAKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276 >gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|123634628|sp|Q48C02|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. B076] gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str. race 4] gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 276 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 97/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + ++ R + N VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|307609174|emb|CBW98631.1| diaminopimelate epimerase [Legionella pneumophila 130b] Length = 277 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D +T + I L+ FDQ +LI Q +D Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSIQLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T ++ N D S+SV+MG Sbjct: 63 RIFNADGQEVGQCGNGARCIALFARYYGLTAKNKLTVTTKTTLMDLIINEDNSVSVNMGV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IPL + + +N+ N +S+GNPHA+ VE ++ + S Sbjct: 123 PRLAPGEIPLLAD----RQSPEYSLKLNNGNTVNLHAISVGNPHAVLLVE-NIDTAPVNS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + E ++LR +ERG G T ACGS A A+ + + Sbjct: 178 LGQQISFHPQFPEQVNVGFMQIVNHEKINLRVYERGCGETIACGSGAVAAAAIARLFYNL 237 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + ++V + GG L I+W + +TG A +EG L Sbjct: 238 SDKITVHLPGGDLCIQWPCPTAPIILTGPAAFVYEGTL 275 >gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174] gi|149834042|gb|EDM89122.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174] Length = 280 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 133/287 (46%), Gaps = 18/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + ++ N ++ A D ++LI A D + Sbjct: 1 MKFTKMHGIGNDYVYVNCFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPSDVA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-------RDGSIS 117 + N DGS+ CGNG+RCV ++ + + + + Sbjct: 59 DMYNLDGSQGAMCGNGIRCVAKYAYDYGIVNKTNISVATKSGIKYLDLTLGDDGKVALVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG PIL + IP+ + +++ + ++ + VSMGNPHAI +++ DL + Sbjct: 119 VNMGAPILTSRQIPVVSTKEQVIDEPLNVDGTTYHI----TAVSMGNPHAIVYMD-DLRN 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G H F + +N +V +L +R WERG G T ACG+ ACA VAS Sbjct: 174 LDIEKIGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGACAVAVAST 233 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+VK+LGG L I W+ + V+MTG A ++G++ + Sbjct: 234 LNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIFL 280 >gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A] Length = 271 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 82/281 (29%), Positives = 124/281 (44%), Gaps = 21/281 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TARIKFTKMHGTGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T+ GI + K +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVS- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + VSMGNPH + F++ D+ + Sbjct: 119 -------------TVTVDMGSPQETGEIDWGKKYPFQSTKVSMGNPHLVTFID-DITRIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 R V M GG + IEW + H+ MTG A K ++G++ Sbjct: 225 GLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265 >gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str. DC3000] gi|32171419|sp|Q88B09|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str. DC3000] Length = 276 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|163734416|ref|ZP_02141856.1| diaminopimelate epimerase [Roseobacter litoralis Och 149] gi|161392424|gb|EDQ16753.1| diaminopimelate epimerase [Roseobacter litoralis Och 149] Length = 277 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T AL+ FDQ+ LI + + + Sbjct: 9 LPFMKMHGLGNDFVVLDARVRSIGVTPLFAQALANRHTGVGFDQLALITNTKTG---VHL 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ ++ ++ T T RG+L A +G SV+MG P Sbjct: 66 AFFNADGSVSSACGNATRCIADYIMAQTGASDVTLSTDRGVLAACRAANGQTSVNMGAPQ 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW +PLAR D ++ P MGNPH FFV+ D D+A G Sbjct: 126 LDWAEVPLAREMDTLEL----------PMKGAPTATGMGNPHCTFFVD-DAMQIDVAKLG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 H +F + N+ A +T + + +R WERGVG+T A GS++CA VA+ T R Sbjct: 175 AEFEHHELFPQRTNVQFASITGPDQIRMRVWERGVGITLASGSSSCAVAVAAARRGLTGR 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V + + GG L I+W D+ V+MTG + + G L Sbjct: 235 KVQIDLDGGRLEIDWRDDG-VWMTGPTQHVFSGTL 268 >gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|6014917|sp|O05322|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens] gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 276 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 129/281 (45%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I V+MG Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRSDGQIGVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP VSMGNPHA+ V D+ + Sbjct: 122 APRLVPADIPFQAPA-----QALSYQVDVDGATVELAAVSMGNPHAVLRV-ADINSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565] gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565] Length = 271 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 124/281 (44%), Gaps = 21/281 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D + AI D ++LI A D Sbjct: 2 TTRIKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T+ GI + K +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVS- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + VSMGNPH + F++ D+ + Sbjct: 119 -------------TVTVDMGSPQETGEIDWGKKYPFQSTKVSMGNPHLVTFID-DITRIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 R V M GG + +EW + H+ MTG A K ++G++ Sbjct: 225 GLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEI 265 >gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211] gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211] Length = 284 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 140/288 (48%), Gaps = 15/288 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN---ITSDA---INALSTDDNTHFDQIMLIHDFQD 57 +++ F K G+GN ++ID R ++++ I+ D I+LI Sbjct: 2 TLIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILPP-V 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDG 114 A D ++I N DGSE + CGNG+RC++R++ + F ET+ G + G Sbjct: 61 AGGDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAGKIQINIEE-G 119 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +I VDMG PI + IP ++ + I ++ FL SMGNPHAI V Sbjct: 120 NIKVDMGSPIFAPEKIPTTLPINERGIPQGRITILDQDFL--VSACSMGNPHAIIEVPT- 176 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + L +G L HP+F + N+ +V S +++ WERG G T ACG+ ACA + Sbjct: 177 IKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACACLA 236 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 L K N + VK+ GG L I W +FM G+AK + G +I Sbjct: 237 VLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGSFNI 284 >gi|146328927|ref|YP_001208979.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A] gi|146232397|gb|ABQ13375.1| diaminopimelate epimerase [Dichelobacter nodosus VCS1703A] Length = 278 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 79/274 (28%), Positives = 132/274 (48%), Gaps = 4/274 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V++ + T D I+AL+ + FDQ++L+ + ++ D RI Sbjct: 6 FSKMHGLGNDFVVLNCLHLPFSWTKDDISALAHRNCGIGFDQLLLLEPPKSSAADFSYRI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV+ CGNG RC+ +++ ++ + + Sbjct: 66 FNADGSEVEHCGNGARCLGKYIRDNGLFDFTRPAVVQTQKRTIIIDYCGVQNGSELFRVQ 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 +P F + +VSMGNPHA+ V+ D+ + + G+ Sbjct: 126 MG-VPDFSPFTTLQTSALAQPLSLAAGHFECGIVSMGNPHAVICVD-DVETAAVTAIGSA 183 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L +HP+F + VN+ ++ + E + LR +ERGVG T ACG+ ACA+V + V Sbjct: 184 LQQHPLFPQRVNVGFMQIINREHIRLRVFERGVGETLACGTGACAAVSVGIARGDLAQTV 243 Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V + GG L+I+W + +FMTG A + G++ Sbjct: 244 HVDLRGGSLIIDWAGEKEPLFMTGSATAVYHGQI 277 >gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056] gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056] Length = 284 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 135/283 (47%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D N + + D ++LI A D Sbjct: 2 TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ + + T +T+ GI + K + G Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178 + + P+ ++D P+ +R VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPSDEPV--NYDGKGSKPMTEHPIEIDGIRYTGTTVSMGNPHLVIFV-NDITKA 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL+S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 DLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + R + M GG L IEW HVFMTGEA K +EG+++ Sbjct: 237 TGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279 >gi|260771627|ref|ZP_05880547.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14] gi|260613404|gb|EEX38603.1| diaminopimelate epimerase [Vibrio metschnikovii CIP 69.14] Length = 261 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 128/265 (48%), Gaps = 10/265 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + + I L+ FDQ++++ D D RI N DGSEV+ C Sbjct: 1 MVVDCITQNVFFSPELIRRLANRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + ++ T +G ++ D + V+MG P + IP Sbjct: 61 GNGARCFARFVRMKGLTNKYSLSVSTKKGKIILSIEEDDQVCVNMGVPEFEPSKIPF--- 117 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 ++ +I V+ L VSMGNPH + VE D+ ++ G LL H F E Sbjct: 118 -RAKQAEKTYIMRVDEQTLFCG-AVSMGNPHVVTVVE-DIATAEVERIGPLLESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 VN +V + + ++LR +ERG G T ACGS ACA+V + V+V + GG L Sbjct: 175 RVNAGFMQVVNRQQINLRVYERGAGETQACGSGACAAVAVGILQDLLDDTVTVNLPGGRL 234 Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKL 279 I W ++MTG A ++G+L Sbjct: 235 EISWQGPGQPLYMTGPATHVFDGQL 259 >gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552] gi|169292132|gb|EDS74265.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552] Length = 277 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 93/283 (32%), Positives = 138/283 (48%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + +D + + I +S D +++I D + Sbjct: 3 LHFTKMEGLGNDYIYVDGINQDVCMDKEFIKKISDRHFGIGSDGMIVILPSDK--YDFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISV---- 118 R+ N DGSE + CGNG+RC +F+ ET G+ + + DG + Sbjct: 61 RMFNLDGSEGKMCGNGIRCFAKFIYDHKLSDKHVLEIETKAGLRIVELLFDGDKCIGAKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+PIL IP + + M I + N +SMGNPH + FV+ DL Sbjct: 121 DMGKPILTCSDIPCNYNQETMIDQTIVIDDYKY----NLTSISMGNPHTVTFVD-DLETL 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G H MF EGVN V + + +R WERG G T ACG+ ACA++ AS Sbjct: 176 DLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAMYASYL 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T V+V++LGG L IE+ N+ + M+G A +EG +++ Sbjct: 236 NNYTKNKVTVELLGGCLEIEYI-NDTIMMSGPAVNVFEGTIEV 277 >gi|170741816|ref|YP_001770471.1| diaminopimelate epimerase [Methylobacterium sp. 4-46] gi|229807516|sp|B0UCI8|DAPF_METS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|168196090|gb|ACA18037.1| Diaminopimelate epimerase [Methylobacterium sp. 4-46] Length = 293 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 120/277 (43%), Positives = 164/277 (59%), Gaps = 4/277 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+I+V+D+R + + A++ D + FDQ+M++HD DA +RI Sbjct: 8 RFLKMNGLGNEIVVLDLRASSHVVRPEEARAIAADPRSRFDQLMVLHDPVTPGTDARLRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSE +CGNG RCV + + T E+ G+L D +VDMG Sbjct: 68 YNRDGSESGACGNGTRCVAWAMRADPVMGRAGEQLTLESAAGLLAVTRVSDTDFTVDMGP 127 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPL+ F R IGP++ L +P VVSMGNPHA+FFV+ D YDL Sbjct: 128 PHLRWDEIPLSEPFPDTRRIELQIGPIDAPILHSPGVVSMGNPHAVFFVDRDPETYDLGR 187 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F E N+S+A+V + + + LR WERG GLT ACGSAACA++VA+ L T Sbjct: 188 IGPLLEAHPLFPERANISLAQVVAADRIRLRVWERGAGLTRACGSAACAALVAAARLRLT 247 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R +V + GG L+I W +++HV MTG + EWEG+ Sbjct: 248 GRRATVTLPGGDLVIAWGEDDHVRMTGPTELEWEGRF 284 >gi|310828902|ref|YP_003961259.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612] gi|308740636|gb|ADO38296.1| hypothetical protein ELI_3334 [Eubacterium limosum KIST612] Length = 292 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 84/285 (29%), Positives = 127/285 (44%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN +VID + + I A+ D ++L+ + D + Sbjct: 1 MNFTKMQGAGNDFIVIDNMDQSIELPAPLIEAMCRPHFGIGADGLILVEPSES--CDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGS----IS 117 N DGS + CGNG+RC+ ++ K F ET G + + I Sbjct: 59 NYYNQDGSIAEMCGNGVRCLAKYAADAGIVDASKPFEVETRAGKIGVQVLESYRGVSTIR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG + IP+ + ++ + SMGNPH VE ++ Sbjct: 119 VSMGSVSFQTQDIPVISDKTTLLGEKITYKDRELTYG----CASMGNPHMAVLVE-NVDS 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G KHPMF N+S A V S +S+ + TWERGVG T ACG+ CA+V Sbjct: 174 FPIEEVGPYFEKHPMFPNKCNISFAEVISHDSIAMDTWERGVGRTLACGTGTCATVAVLH 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V + GG L+IE D + VFMTG AK + G +++ Sbjct: 234 RMGLVGNKVHACLSGGDLVIEL-DGSAVFMTGPAKVVFRGTYEMQ 277 >gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 276 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + IP + G L VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRLVPEEIPFQTAEQAKSYSLDVDGQSVELA-----AVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis 2002] gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis 2002] Length = 278 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + A D ++L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVFERGIVKATKFKVETLAGIIEPELFINEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + + N + + MG PH I FV+ DL Sbjct: 119 VNMGKPSFKRKDIPMQGDPKSDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DLEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 235 LNGLTERKANVHLYFGILEIEWREDGIVFMTGPAEEVFVGE 275 >gi|304310447|ref|YP_003810045.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] gi|301796180|emb|CBL44386.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] Length = 279 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 89/277 (32%), Positives = 128/277 (46%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D ++ S+ I L+ FDQ++++ + VD Sbjct: 8 LAFTKMHGLGNDFMVLDATRAPIHLDSEQIRRLADRHFGVGFDQLLVVESATNPEVDFNY 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEP 123 RI N DG EV+ CGNG RC RF+ + + + + N G + VDMG P Sbjct: 68 RIFNADGGEVEQCGNGARCFARFVHEKGLTQKNPVRVSTKAGIIQLNLQGDFVQVDMGVP 127 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K IP + + D VV+MGNPHA+ V ++ +A Sbjct: 128 KTSPKEIPFSAATD-----EIFHFLKVGDQTLTISVVNMGNPHAVLQVS-NVETAPVAQI 181 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G ++ HP F VN+ V S + LR +ERG G T ACG+ ACA+ VA + Sbjct: 182 GPMIESHPSFPARVNVGFMEVVSRNHIKLRVFERGAGETLACGTGACAAAVAGIRAGLLD 241 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V V++ GG L I+W V M G A K +EG Sbjct: 242 SPVKVELAGGELQIQWAGIATSVIMEGPATKVYEGFW 278 >gi|330952169|gb|EGH52429.1| diaminopimelate epimerase [Pseudomonas syringae Cit 7] Length = 276 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A + FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGARHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPFEAA-----EQATCYTVDVDGQSIEMAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|27375588|ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] gi|32171443|sp|Q89X45|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|27348725|dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 126/276 (45%), Positives = 172/276 (62%), Gaps = 4/276 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFIRI 66 FAKM GIGN+I+V+DMR +T D A+++ +DQ+M++ + +AFI I Sbjct: 9 FAKMNGIGNEIVVVDMRDSTAKVTPDDARAVASAQGGVPYDQLMVLQKPRLDGTEAFISI 68 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPIL 125 N DGSE +CGNGMRCVVR + + + + TFET G+L A + +VDMG P Sbjct: 69 YNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPAPDLYTVDMGVPKF 128 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA F IGP+++ L +P VVSMGNPHAIF+V+ D+ YDLA FG Sbjct: 129 GWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWVD-DVNAYDLARFGP 187 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L + R Sbjct: 188 LLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATAVAAARLKRAERN 247 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 V + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 VEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFD 283 >gi|153953828|ref|YP_001394593.1| diaminopimelate epimerase [Clostridium kluyveri DSM 555] gi|219854444|ref|YP_002471566.1| hypothetical protein CKR_1101 [Clostridium kluyveri NBRC 12016] gi|146346709|gb|EDK33245.1| DapF [Clostridium kluyveri DSM 555] gi|219568168|dbj|BAH06152.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 274 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 141/284 (49%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +VID R A+ + D ++++ + AS+ Sbjct: 1 MKFTKMHGTGNDFIVIDDRENRFLGKEEELALRLCNRHFGIGADGVLIVRNSDIASI--K 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSIS 117 + IIN DGS CGNG+RC +++ K + G + K + I+ Sbjct: 59 MVIINSDGSYASMCGNGIRCFAKYIWEENLVKDKILKIETGDGIKEAVVTIKNGKAEEIT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG P + +P+ + ++++ + + MG PH + F + L Sbjct: 119 IDMGMPSFAPRKVPVEFKEEVIEKEVKIKNKNYIITT-----LFMGVPHTVIFGK--LED 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+A G + K+P+F++G N++ + + + + ++TWERG G T ACG+ +CA VVA+ Sbjct: 172 YDVAE-GEYIEKYPVFTQGTNVNFCEIVNEKEVKVKTWERGAGPTLACGTGSCACVVAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + T + V V + GG LL+E D+N VFMTG A ++G+ DI Sbjct: 231 KIGLTGKEVKVSVPGGILLVEIKDDNSVFMTGPAAISFKGEYDI 274 >gi|329904565|ref|ZP_08273871.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480] gi|327547925|gb|EGF32675.1| Diaminopimelate epimerase [Oxalobacteraceae bacterium IMCC9480] Length = 285 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 7/283 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +VID N+T L+ DQI+++ A +D Sbjct: 3 IKFTKMHGAGNDFIVIDAINQTINLTPVQWRQLADRRFGIGADQILVVEASGIADIDFRY 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV+ CGNG R VRF+T + + T+ G++V + DGSI+VDMG Sbjct: 63 RIFNADGGEVEQCGNGARAFVRFVTEKKLTSKSVLRVATMNGVIVPRLEADGSITVDMGA 122 Query: 123 PILDWKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P+ +P + D + + V+SMGNPHA+ V+ + L Sbjct: 123 PVFAPARVPFDTTGLDSIADAEEALWPLQINDRTVMMSVLSMGNPHAVQIVDA-VETAGL 181 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A G + H F VN ++ ++ LR +ERG G T ACG+ ACA+ VA Sbjct: 182 ALDGPAIEHHVRFPNRVNAGFMQILDRHAIRLRVFERGAGETLACGTGACAAAVAGIRRG 241 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 + + V V+ GG L I W +HV ++G A +EG++ + Sbjct: 242 QLDTPVRVETRGGQLSIAWEGGASHVMLSGPAVTVFEGEITLP 284 >gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13] gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] Length = 276 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 137/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ + DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELEIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + +P F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25] gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25] Length = 276 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGVIELDIRSDGQISVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + + VSMGNPHA+ V +D+ + + Sbjct: 122 APRLVPADIPFEAT-----EQAVSYALDVDGKTVDIAAVSMGNPHAVLRV-NDINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 EWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276 >gi|227823741|ref|YP_002827714.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234] gi|227342743|gb|ACP26961.1| diaminopimelate epimerase [Sinorhizobium fredii NGR234] Length = 306 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 148/291 (50%), Positives = 190/291 (65%), Gaps = 1/291 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA+I Sbjct: 10 VQFARMNGLGNKILVVDMRGRKDRVTPGAAIALNADPATEFDQIMAIHDPRAPGTDAWID 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+N DGS Q+CGNG RCVV+ L + +K+F F T+ G+L A+E+ DG ISVDMG P Sbjct: 70 IVNSDGSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAREHDDGLISVDMGSPRF 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLA F R IGP++ L +P V SMGNPHAIF+VE+D++ Y+L FG Sbjct: 130 GWNEIPLAEEFHDTRRIELQIGPIDDPVLHSPSVASMGNPHAIFWVENDVWSYELDRFGP 189 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+SIA V S + +DLRTWERG GLT ACGSAACA+ V+ +T+R Sbjct: 190 LLENHPIFPERANISIAHVRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTDRI 249 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 V+V + GG L IEW + ++HV MTG A+ EW G +D TG + + Sbjct: 250 VTVNVPGGPLKIEWRESDDHVIMTGPAEWEWTGTVDPATGAFERDAAATSE 300 >gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750] gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750] Length = 305 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 27/301 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D DN + AI+ D ++LI + A D F+ Sbjct: 7 MKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA--DFFM 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSIS 117 + N DGS+ Q CGNG+RCV +F+ + + T +T+ G+ + + + + + Sbjct: 65 EMYNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETAR 124 Query: 118 VDMGEPILDWKLIPL--------------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 V+MG PIL+ IP+ + + V VSMG Sbjct: 125 VNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTAVSMG 184 Query: 164 NPHAIFFVEDDLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 NPHAI +++ D+ +++ G H F E +N +V +L++R WERG G Sbjct: 185 NPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWERGSGE 244 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 T ACG+ ACAS+VA+ + ++ +LGG L I W + N V++ G AK + G++D Sbjct: 245 TLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVD 304 Query: 281 I 281 I Sbjct: 305 I 305 >gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101] Length = 395 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 + F+K +G+GN L++D R D +T + + L D ++L + Sbjct: 16 LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGVGGDGVILALPANNGG 75 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSI 116 + +RI N DG+E + CGNG+RC+ RFL R +++ +T+ G +V + DG+I Sbjct: 76 -ELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTLAGRIVPELLPDGTI 134 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG P L +P + + +F MGNPH + V + Sbjct: 135 RVDMGAPFLHSDQVPTTLPVGAAGLPQGELDVDGEVF--AVAAAGMGNPHVVIPVPL-VE 191 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL FG LL HP F N+ +V S + L +R WERG G T ACG+ ACA++V+ Sbjct: 192 EIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERGAGPTLACGTGACATLVSC 251 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 L +R + + GG L I W + VFM G A+ ++ + Sbjct: 252 HSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAEHVFDAVI 295 >gi|265764282|ref|ZP_06092850.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16] gi|263256890|gb|EEZ28236.1| diaminopimelate epimerase [Bacteroides sp. 2_1_16] Length = 269 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 21/285 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + ++ AI + D ++LI A D Sbjct: 2 ARAIQFTKMHGTGNNYIYVNTLRFPIARPEKAAIEWSAYHTGIGSDGLVLIGHSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ + + T +T+ GI + + + +G Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVE- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + F VSMGNPH + FV+ D+ + Sbjct: 119 -------------TVTVDMGIPLETGTIDFDGEFPFLSTQVSMGNPHLVTFVD-DIRIVN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L+ G L KHP+F + N+ A++T ++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LSEMGPKLEKHPLFPDRTNVEFAQITGENTIRMRVWERGSGITQACGTGACATAVAAHLT 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKT 283 +T R V+V M GG L IEW + H+ MTG A K ++G ++++ Sbjct: 225 GRTGRTVNVVMDGGTLTIEWDEATGHISMTGPAVKVFDGTIELRE 269 >gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5] Length = 276 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 134/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047] Length = 261 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 123/267 (46%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +VID+ + + I FDQ++++ Q D RI N DGSEV+ C Sbjct: 1 MVIDLVSQYVKLKPHLIPRWADRHFGIGFDQLLVVEPPQSPKADFRYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC F+ + +K ET G++ + ++VDMG P L IP Sbjct: 61 GNGARCFALFVRDKKLTNKKHLIVETKGGVIELHVTNNNEVTVDMGVPTLQPSKIPFEAK 120 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + + VSMGNPH + VE D+ D+ + G L+ H F + Sbjct: 121 -----EQAISYIIDINGQPLDISAVSMGNPHGVTLVE-DVKTADVETLGPLVEGHSRFPQ 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 N ++ S + LR +ERG G T ACG+ ACA+VVA +V+V + GG L Sbjct: 175 RTNAGFMQIISPSEIRLRVYERGAGETLACGTGACAAVVAGRLRGLLEESVTVHLPGGSL 234 Query: 256 LIEWH-DNNHVFMTGEAKKEWEGKLDI 281 I W + V MTG KK +EG++ + Sbjct: 235 NIVWPGEGQPVKMTGPCKKVFEGRIYL 261 >gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] Length = 269 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 128/281 (45%), Gaps = 18/281 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + I+ + A+ D ++LI D + Sbjct: 1 MKFTKMQGTGNDYVYINCFEETVERPEELAVKVSDRHFGIGSDGLILICPS--GQADCRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 ++ N DGSE + CGNG+RCV + +++K F ET GI K +G Sbjct: 59 KMFNADGSESEMCGNGIRCVGKFVYDHHIVEKKEFDVETKAGIKHLKVTDEGG------- 111 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 LI + ++ D V+ +SMGNPHAI++++ ++ DL + Sbjct: 112 ---KAALITVDMGIPEVTGDVPEPIVVDGRSYE-FIGISMGNPHAIYYMD-EIDDLDLEA 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H F E N +V L +R WERG G T ACG+ A AS VAS +T Sbjct: 167 IGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATASAVASVLSGRT 226 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 V V++ GG L I W ++ HV+MTG A + ++G+ + Sbjct: 227 ENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGEFQPE 267 >gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758] gi|225209149|gb|EEG91503.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758] Length = 275 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 137/283 (48%), Gaps = 16/283 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F KM G+GN + I+ L D ++LI + + D Sbjct: 1 MI-FTKMHGLGNDYVCINCFRERVEDPPGFARTLCDRHYGIGADGLILICPSKVS--DFK 57 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRG----ILVAKENRDGSIS 117 + I N DGS CGNG+RC+ + +++ + ET G L ++ + Sbjct: 58 MEIYNSDGSVAGMCGNGIRCLGKYVYDYRLTGKETLSIETKSGIRNMHLHIQDGKACGAM 117 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ IP+ D + D + N+ +SMGNPHA+ F+E ++ Sbjct: 118 VDMGVPRLNAHSIPILSEKDLVINDPIEVQKKNYRMTG----ISMGNPHAVIFLE-EING 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L G L HP F E N+ VT+ + +++R WERGVG T ACG+ ACA+VVAS Sbjct: 173 ISLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAVVASV 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 T+ V VK+LGG L + W NHVF+ G A K ++G L Sbjct: 233 LNDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDGVL 275 >gi|237713579|ref|ZP_04544060.1| diaminopimelate epimerase [Bacteroides sp. D1] gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22] gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a] gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b] gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22] gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1] gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22] gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a] gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b] gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22] Length = 271 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 122/278 (43%), Gaps = 21/278 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D + AI D ++LI A D + Sbjct: 5 IKFTKMHGAGNDYIYVDTTRYPIADPEKKAIEWSKFHTGIGSDGLILIGVSDKA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGNG RCV + + T +T+ GI + K +G Sbjct: 63 RIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLQVEGKTVS---- 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + D + VSMGNPH + F++ D+ +L Sbjct: 119 ----------TVTVDMGSPQETGEIDWGKKYPFQSTKVSMGNPHLVTFID-DITRINLPE 167 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L HP+F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 168 IGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAFINGLA 227 Query: 243 NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 R V M GG + IEW + H+ MTG A K ++G++ Sbjct: 228 GRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEI 265 >gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 276 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDADGQTVELAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|299133085|ref|ZP_07026280.1| diaminopimelate epimerase [Afipia sp. 1NLS2] gi|298593222|gb|EFI53422.1| diaminopimelate epimerase [Afipia sp. 1NLS2] Length = 290 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 122/275 (44%), Positives = 170/275 (61%), Gaps = 3/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R +++ A++ + +DQ+M++ + A AFIRI Sbjct: 9 FAKMNGIGNEIVVVDLRKSDSQVSAAEARAVAAPNGVPYDQLMVLQKPKLAGTSAFIRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV + + ++ TFET G+L + +VDMG P Sbjct: 69 NNDGSEAGACGNGMRCVAKRVFGENGERAATFETRAGLLNCWQGPSPDLYTVDMGAPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F +GP++ L +P VVSMGNPHAIF+V+ D+ YDL FG L Sbjct: 129 WQDIPLAEEFRDTRYIELQVGPIDSPVLHSPSVVSMGNPHAIFWVD-DIDAYDLERFGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + + +RTWERG GLT ACGSAACA+ VA+ L +TNR V Sbjct: 188 LENHPIFPERANITLAHIVDRDHIRMRTWERGAGLTKACGSAACATAVAAARLKRTNRIV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 QMSLPGGDLTIEWRERDDHVLMTGAAVLEYEGVFD 282 >gi|57238764|ref|YP_179900.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] gi|57160843|emb|CAH57741.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] Length = 265 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 97/275 (35%), Positives = 138/275 (50%), Gaps = 10/275 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M++F KM G N ++ID R + + DQ+++I + A D FI Sbjct: 1 MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS+V+ CGN RCV L++ K + T E IL I V+MG P Sbjct: 58 HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 WK IP+ D + P+ L P V++GNPHA+FFV+ + L G Sbjct: 118 FHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFVD-SIDDIPLTKIG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + TN Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ + GG LLI + D+N + M G + G + Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265 >gi|126727810|ref|ZP_01743640.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150] gi|126702937|gb|EBA02040.1| Diaminopimelate epimerase [Rhodobacterales bacterium HTCC2150] Length = 278 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 97/273 (35%), Positives = 138/273 (50%), Gaps = 16/273 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +VID RG +T AL FDQ+ I + D + Sbjct: 12 FMKMHGLGNDFVVIDSRGRDAVVTEKLARALGDRNRGVGFDQLAEIR--DGVTSDVILDF 69 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RCV FL + + T RG+L AK +S++MG P LD Sbjct: 70 WNSDGSRAGACGNATRCVSEFLMRQAGTGELSLTTERGLLRAKW-SGDLVSINMGLPQLD 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ +PLAR +P V MGNPH +FFV+ D+ D A G Sbjct: 129 WQDVPLARDVPVDHL----------PIDGDPVAVGMGNPHCVFFVD-DIADVDPAIAGPP 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + H +F E N+ A+V S + + +R WERG G+T ACGS ACA+ VA+ T++ V Sbjct: 178 IENHELFPERCNVEFAQVRSRDEIRMRVWERGTGITLACGSGACATAVAAHLRGLTDKCV 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +++ GG L ++W D+ V+MTG ++ +L Sbjct: 238 RMEVDGGWLTLDWRDDG-VWMTGPTAHVFDARL 269 >gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a] gi|75503931|sp|Q500B6|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|63254160|gb|AAY35256.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a] gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 276 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPFEAA-----EQATCYTVDVDGQHVDMAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|239833058|ref|ZP_04681387.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] gi|239825325|gb|EEQ96893.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] Length = 318 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 151/284 (53%), Positives = 196/284 (69%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM G+GN+I+V DMRG D IT +A L++D T FDQIM IHD + A D +I II Sbjct: 25 FAKMNGLGNQIIVADMRGRADRITPEAAIRLASDSETAFDQIMAIHDPRTAGTDNYIAII 84 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 NCDG++ Q+CGNG RCVV+ L + R++FTFET GIL A E+ DG ISVDMG+P DW Sbjct: 85 NCDGTQAQACGNGTRCVVQALAAETGRQAFTFETRAGILTATEHEDGLISVDMGKPRFDW 144 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + IPLA F +GP++ L +P V SMGNPHAIF+V+ D++ Y+L FG LL Sbjct: 145 QDIPLAEEFRDTRMIELQVGPIDAPVLHSPSVASMGNPHAIFWVDRDVWSYELEKFGPLL 204 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+SIA VTS E+++LRTWERG GLT ACGSAACA+ V++ +T R V+ Sbjct: 205 EHHPIFPERANISIAEVTSPETMNLRTWERGAGLTRACGSAACAAAVSAARTRRTGRTVT 264 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG LLIEW D++HV MTG A+ E+ G D TG+W + + Sbjct: 265 VNVPGGPLLIEWRDDDHVIMTGPAEWEFSGIFDPATGEWSRDAQ 308 >gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108] gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108] Length = 278 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + A D ++L+ + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKRMCHRHIGVGADGLLLVLNSDIA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R K+ F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYERGIVKATKFKVETLAGIIEPELFVNEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P K IP+ + + + N + + MG PH I FV+ D+ Sbjct: 119 VNMGKPSFKRKDIPMQGDPESDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DVEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH F N++ +V ++ +RTWERG G T ACG+ +CASV+AS Sbjct: 175 VDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIASN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 T R +V + G L IEW ++ VFMTG A++ + G+ Sbjct: 235 LNGFTERKANVHLYFGILEIEWQEDGIVFMTGPAEEVFVGE 275 >gi|254881595|ref|ZP_05254305.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA] gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A] Length = 280 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 8/282 (2%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ + A + D ++LI + A D Sbjct: 2 ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSAYHTGIGADGLVLIGVSEKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ +++ + ++ T ET+ GI + K + + D Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + L+ + V MGNPH + FV+ D+ D Sbjct: 120 VTVDMGTP-LLSNPGQIATKTGGMLAETILADGKEYKGTFVCMGNPHVVIFVD-DIKEVD 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G L HP+F E N+ + +SL +R WERG G+T ACG+ ACA+ VA+ Sbjct: 178 LPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAVAAVLN 237 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 HK R V+M GG L I W + + HV+MTG A K +EG+++ Sbjct: 238 HKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEIE 279 >gi|220920231|ref|YP_002495532.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060] gi|254767114|sp|B8I9H6|DAPF_METNO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219944837|gb|ACL55229.1| diaminopimelate epimerase [Methylobacterium nodulans ORS 2060] Length = 293 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 124/277 (44%), Positives = 164/277 (59%), Gaps = 4/277 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+I+V+D+RG + A++ D + FDQ+M++HD A DA +RI Sbjct: 8 RFLKMNGLGNEIVVLDLRGTPHIVQPQEARAIAADPRSRFDQLMVLHDPVTAGTDAALRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRFL----TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGSE +CGNG RCV + + T ++ G+L +VDMG Sbjct: 68 YNTDGSESGACGNGTRCVAWAMLEDPVMGRPAERLTLQSRAGLLAVTRVSATDFTVDMGP 127 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L W IPLA F R IGP++ L +P VVSMGNPHA+FFV+ D YDLA Sbjct: 128 PRLRWDEIPLAEPFPDTRRIELQIGPIDDPILHSPGVVSMGNPHAVFFVDRDPASYDLAR 187 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F E N+S+A+V E + LR WERG GLT ACGSAACA++VA+ L T Sbjct: 188 IGPLLEAHPIFPERANISVAQVRGPEHIVLRVWERGAGLTRACGSAACAALVAAARLRLT 247 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 R V + GG L+I+W +++HV MTG + EWEG L Sbjct: 248 GRRAVVTLPGGDLVIDWGEDDHVRMTGPTELEWEGTL 284 >gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 276 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 133/281 (47%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPDEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 QLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1] gi|123602830|sp|Q3K4R8|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1] Length = 276 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 129/281 (45%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H +I FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET GI+ DG I V+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP + VSMGNPHA+ V D+ + Sbjct: 122 APRLVPADIPFQAP-----EQALSYQVDVDGTPVDLAAVSMGNPHAVLRVS-DINTAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ +V LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276 >gi|58616748|ref|YP_195947.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel] gi|58416360|emb|CAI27473.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Gardel] Length = 265 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 10/275 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M++F KM G N ++ID R + + DQ+++I + A D FI Sbjct: 1 MINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DCFI 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS+V+ CGN RCV L++ K + T E IL I V+MG P Sbjct: 58 HIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 WK IP+ + D + P+ L P V++GNPHA+FFV+ + L G Sbjct: 118 FHWKDIPVLHACDTL------YLPIKTELLSYPVGVNIGNPHAVFFVD-SIDDIPLTKIG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + TN Sbjct: 171 PELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNH 230 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ + GG LLI + D+N + M G + G + Sbjct: 231 HATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 265 >gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482] gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510] gi|166224242|sp|A6L7E5|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482] gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510] Length = 280 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 8/282 (2%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM+G GN + ++ + A + D ++LI + A D Sbjct: 2 ATTIKFTKMQGTGNDYIYVNTLSSPLQDPIKAARKWSTYHTGIGADGLVLIGASEKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ +++ + ++ T ET+ GI + K + + D Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVVKD 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + L + K P + + V MGNPH + FV+ D+ D Sbjct: 120 VTVDMGTPLLSNPGQIATKTGGMLAETIPADGKEYK-GTFVCMGNPHVVIFVD-DIKEVD 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + G L HP+F E N+ + +SL +R WERG G+T ACG+ ACA+ VA+ Sbjct: 178 LPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACGTGACATAVAAVLN 237 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 HK R V+M GG L I W++ + HV+MTG A K +EG+++ Sbjct: 238 HKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEIE 279 >gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of Rhopalodia gibba] Length = 279 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDA-INALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K G+GN +++I R + + + + + D ++ + D Sbjct: 3 IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPG-IGNTDYT 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI+N DGSE Q CGNG+RC+ R + K+++ T G++ + +G + VD Sbjct: 62 MRILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVD 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P L IP + + L VSMGNPH I FVE D D Sbjct: 122 MGTPYLFAHEIPTTLG--NPNETVINKPLAVAGKLWLVTCVSMGNPHCITFVE-DASAID 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 LA G H MF E +N V + L +R WERG G T ACG+ ACASVVA Sbjct: 179 LAVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAGVLT 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 R +V++ GG L+IEW + +N ++MTG+A+ + G Sbjct: 239 ENCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGS 278 >gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1] gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1] Length = 280 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 86/282 (30%), Positives = 135/282 (47%), Gaps = 16/282 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KMEGIGN + ID + I +S D +++I + + D Sbjct: 1 MLKFTKMEGIGNDYIYIDGIHQDVPMNPHFITKISDRHFGIGSDGVIVIQESEI--CDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117 +R+ N DGSE + CGNG+RC +F+ K E + L+ N+ + Sbjct: 59 MRMFNLDGSEGKMCGNGIRCFAKFVYDHQLTKKTYLEIETLGGIKKVWLIIDNNKVQYVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+PIL K IP ++M + + + +SMGNPH + ++ Sbjct: 119 VNMGQPILKSKEIPCLFDKEEMINEPIEVDGQVYYLTS----LSMGNPHTVIYMNH--LD 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +++ G KH +F E VN V + + L +R WERG G T ACG+ ACA + AS Sbjct: 173 FNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAVMYASY 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V++LGG L I + +N ++M+G A +EG + Sbjct: 233 INGLCDNHVQVELLGGILDISY-ENGEIWMSGPATTVFEGII 273 >gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4] gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4] Length = 279 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 84/281 (29%), Positives = 122/281 (43%), Gaps = 13/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN +V+ R + A D ++ I + D +R Sbjct: 1 MHFVKMHGLGNDFVVVMARTLPPDTPELARKVCRPHFGVGADGLVFILPSE--EADITMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISVD 119 I N DGSE + CGN +RCV + G + K+ + S +VD Sbjct: 59 IFNADGSEAEMCGNAIRCVAKLAYETRLIPYQRMRIATGAGIKPVELTVKDGKVVSCTVD 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MGEPIL+ IP+ K+ + + +S GNPH + FV + Sbjct: 119 MGEPILERSAIPMQGPPGKVVNEPLI---FEDGLVLRVTALSFGNPHCVLFVPA-VEEAP 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G L HP F N+ V + +R WERGVG T ACGS ACA+ VAS Sbjct: 175 VEELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAAAVASILN 234 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 T R + V + GG L I W ++ HV++ G A ++G+ Sbjct: 235 GYTAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGEW 275 >gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6] gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6] Length = 277 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + + T AI D ++++ + D + Sbjct: 1 MKLTKMHGLGNDFILFSDSQGANKDYTDLAIRLCDRRTGIGADGLVIVVPS--NTCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGNG+RC + + + +FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKDTFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + K IP+ + DK+ + + V +G PH FV+ D+ Sbjct: 119 DMGKPFFNSKDIPMNVTMDKV----IDVDLDVNGETVTVSSVLLGVPHTEVFVD-DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + +RTWERG G T ACG+ +CAS + S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSCASAIMSHE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I+ Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPIE 277 >gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 276 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 136/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKGGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVELAAVSMGNPHAVLRVD-DINNVPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 TLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276 >gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str. F0412] Length = 277 Score = 205 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 137/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + T AI D + ++ + + D + Sbjct: 1 MKLTKMHGLGNDFILFADPKGTEKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGN +RC + +++FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + IP+ DK+ + + V +G PH F++ D+ Sbjct: 119 DMGKPFFKSQDIPMNVDMDKV----IDVDLDVNGETVTVSSVLLGVPHTEVFID-DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS V S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|88705497|ref|ZP_01103207.1| Diaminopimelate epimerase [Congregibacter litoralis KT71] gi|88700010|gb|EAQ97119.1| Diaminopimelate epimerase [Congregibacter litoralis KT71] Length = 269 Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 120/275 (43%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN ++ID + I ++ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVMIDTISQRIKLRPRDIRRIADRRRGVGCDQVLLVEPPGQPEADFRYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGNG RC RF + E ++ + + + VDMG P+ Sbjct: 61 DGSEAGQCGNGARCFARFVRHRRLTHLTTMVVEAGSSLMTLRLRENHEVEVDMGAPLFTP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP R+ + + G V+SMGNPHA+ V +D+ L G + Sbjct: 121 ADIPFRRAETAPEYELTAAG-----ETLRVGVLSMGNPHAVLRV-NDVNDGSLERLGEAI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 H F E N V + LR +ERGVG T ACGS ACA+VV + + V+ Sbjct: 175 RSHEDFPEETNAGFLEVVDRTHVRLRVFERGVGETEACGSGACAAVVYGRRMGWLDDRVT 234 Query: 248 VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 V++ GG L I+W ++ V MTG +EG + + Sbjct: 235 VELTGGKLHIQWQGDDSSVLMTGPTAISFEGTIRL 269 >gi|298489347|ref|ZP_07007361.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 276 Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + ++ R + N VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPF-EAAEQATRYNVEVDGQNIEL----AAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ V + LR WER G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|213581094|ref|ZP_03362920.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 246 Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 117/251 (46%), Gaps = 9/251 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ ++ + + Sbjct: 121 PNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLL 234 Query: 243 NRAVSVKMLGG 253 V V++ GG Sbjct: 235 AEEVRVELPGG 245 >gi|315924517|ref|ZP_07920738.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622221|gb|EFV02181.1| diaminopimelate epimerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 279 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 15/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN +V++ + I L D ++L+ + + AF+ Sbjct: 1 MKFLKMHGAGNDFIVVNNLDKSMMFSQKQIAQLCDRHKGIGADGLILVEPSNEDA--AFM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 N DG+ Q CGNGMRC+ +++T R +K+ FT + G + + + I V Sbjct: 59 DYYNADGTIAQMCGNGMRCLAKYVTDRQIVKKTQFTIASRAGRIGIELLKRTPAESTIRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG + + IP+ +++ F V + + SMGNPH + + D Sbjct: 119 DMGNVVFSAQKIPVISKKEEVIGAHFDWDGVTY----SYGCASMGNPHMVV-LTGDFDQT 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G KH MF E N+S A V + + TWERG G T ACG+ CA+V Sbjct: 174 PIEAIGPYYEKHAMFPENCNISFAEVKDTNHIRMDTWERGDGRTLACGTGTCATVAVLHR 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 L K + AV ++ GG L +E D +HV+MTG A+ +EG +D++ Sbjct: 234 LGKVDTAVEAQLSGGILSVEL-DGSHVWMTGPAQTVYEGSVDVEAL 278 >gi|154244368|ref|YP_001415326.1| diaminopimelate epimerase [Xanthobacter autotrophicus Py2] gi|154158453|gb|ABS65669.1| Diaminopimelate epimerase [Xanthobacter autotrophicus Py2] Length = 290 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 107/280 (38%), Positives = 150/280 (53%), Gaps = 6/280 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+ILV+D+R + + A AL+ FDQ M+++ + AF+RI Sbjct: 13 PFVKMNGLGNEILVLDLRADPVEVPAAAARALARPSVLPFDQAMVLYPPRREGTAAFVRI 72 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DGS +CGNG RC+ R FE+ G+L DG + VDMG P D Sbjct: 73 LNSDGSFSAACGNGTRCIAALEAERTGAPHALFESEAGLLDCLVRPDGQVEVDMGAPRFD 132 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLAR + + L +VSMGNPHA+FFV D D+ G Sbjct: 133 WRDIPLARDV----AETAQVIVPGFEALGPTSLVSMGNPHAVFFV-PDANAVDVEKLGAA 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+S A +T+ + + L WERG G T ACG+AACA+ V++ +T R+V Sbjct: 188 LEHHPLFPERANISFASLTAPDRILLHVWERGAGRTRACGTAACATGVSAARTGRTGRSV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGK 285 +V + GG L I W + + HV MTG + E+ G L + Sbjct: 248 TVTLPGGDLEISWREADGHVLMTGPVEHEFSGTLSPAMLE 287 >gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482] gi|253568641|ref|ZP_04846052.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6] gi|32171444|sp|Q8AAB7|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482] gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6] Length = 267 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + +K T +T GI V K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVT- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D F VSMGNPH + FVE D+ + Sbjct: 119 -------------AVTVDMGSPLETEAVDFGDQFPFQSTRVSMGNPHLVTFVE-DITQIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L + +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLH 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 R + M GG + IEW + H+ MTG A K ++G+++ Sbjct: 225 GLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266 >gi|209883420|ref|YP_002287277.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5] gi|229813237|sp|B6JAP3|DAPF_OLICO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209871616|gb|ACI91412.1| diaminopimelate epimerase [Oligotropha carboxidovorans OM5] Length = 290 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 119/277 (42%), Positives = 166/277 (59%), Gaps = 3/277 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+++D+R +++ A++ +DQ+M++ + AF+RI Sbjct: 9 FAKMNGIGNEIVIVDLRNTDSQLSAAEARAIAAPGGVPYDQLMVLQKPRMPGTTAFVRIY 68 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-DGSISVDMGEPILD 126 N DGSE +CGNGMRCV + + ++ TFET G+L + +VDMG P Sbjct: 69 NNDGSEAGACGNGMRCVAKRVFGESGAQAATFETRAGLLNCWQGPSPDLYTVDMGTPKFG 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHAIF+V+ D+ YDL G L Sbjct: 129 WQDIPLAEEFRDTRYIELQIGPIDAPVLHSPSVVSMGNPHAIFWVD-DIEAYDLERLGPL 187 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A V + +RTWERG GLT ACGSAACA+ VA+ L +T+R V Sbjct: 188 LENHPIFPERANITLAHVVDRNHIRMRTWERGAGLTLACGSAACATAVAAARLKRTDRTV 247 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + + GG L IEW + ++HV MTG A E+EG D Sbjct: 248 EMSLPGGDLTIEWRESDDHVLMTGAAVLEYEGLFDPD 284 >gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A] gi|166225742|sp|A2C243|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A] Length = 284 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 14/285 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN--ITSDA---INALSTD-DNTHFDQIMLIHDFQDASV 60 +F+K +G+GN ++ D R + + + + I L D I+LI + + Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117 ++I N DGSE + CGNG+RC++ FL + + ET G+++ + + +I Sbjct: 64 -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIK 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPIL IP + + I + + N + SMGNPH I FV +D+ Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +G+ L KH F N+ + ++ ++ WERG G T ACG+ ACA +V + Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 L KT +V + GG L +EW + + VFM G A K + G++DI Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284 >gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC 43183] gi|167697141|gb|EDS13720.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC 43183] Length = 284 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 134/283 (47%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D N + + D ++LI A D Sbjct: 2 TRSIKFTKMHGAGNDYIYVDTTRYPIENPEKLSKKWSAPHTGIGSDGLVLIGRSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ + + T +T+ GI + K + G Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKILKLHATGDKVDT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178 + + P+ ++D P+ +R VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPSDEPV--NYDGKGSKPMTEHPIEIDGIRYTGTTVSMGNPHLVIFV-NDITKV 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL+S G L HP+F + N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 DLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + R + M GG L IEW HVFMTGEA K +EG+++ Sbjct: 237 TGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEME 279 >gi|323705514|ref|ZP_08117089.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535416|gb|EGB25192.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum LX-11] Length = 277 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V++ + A D ++++ D + Sbjct: 1 MKFTKMTGLGNDFIVLENLENKELEYDVLARKLCDRHFGIGGDGLLIVEPS--GIADIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKE----NRDGSISV 118 RIIN DGSE + CGNG RC +++ + ET+ GI++ + + + V Sbjct: 59 RIINSDGSEAEMCGNGARCFAKYVYENGIVSKGKMSVETLSGIVMPELIFENDNVDKVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG PI LIP+ ++ + I + + +G PH + FV+ + Sbjct: 119 YMGNPIFRPDLIPVKTDKNQFIEETIKIDGRAY----TVTSLLIGVPHTVIFVD-SIDEN 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G L+ K +F G N+ +V ++ +RTWERG GLT ACG+ ACAS VAS Sbjct: 174 MIVNVGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACASAVASAL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T R V V G L IEW +N++++TG+A+K + G +DI Sbjct: 234 TDRTKRDVYVHFKRGDLYIEWTSDNNIYLTGKAEKVFTGDIDI 276 >gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215] gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215] Length = 286 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59 + F K +G GN +V D RG I + D ++ I + + + Sbjct: 4 ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L +K K + ET G+ +AK Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIN-DK 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILESQNIPTT--IEKKINSIPSHEFIEKNFKYIGYAVGMGNPHLIFFVQ-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L+ G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AK+ + G + Sbjct: 239 AYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSI 283 >gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A] gi|123621276|sp|Q46L14|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A] Length = 284 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 14/285 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN--ITSDA---INALSTD-DNTHFDQIMLIHDFQDASV 60 +F+K +G+GN ++ D R + + + + I L D I+LI + + Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSIS 117 ++I N DGSE + CGNG+RC++ FL + + ET G+++ + + +I Sbjct: 64 -VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIK 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MGEPIL IP + + I + + N + SMGNPH I FV +D+ Sbjct: 123 VNMGEPILSPLDIPTKLLMNSLKVPNGVITLKDQIL--NVYAASMGNPHMIVFV-NDIEG 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +G+ L KH F N+ + ++ ++ WERG G T ACG+ ACA +V + Sbjct: 180 IPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLVVTS 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 L KT +V + GG L +EW + + VFM G A K + G++DI Sbjct: 240 KLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEIDI 284 >gi|15615974|ref|NP_244279.1| diaminopimelate epimerase [Bacillus halodurans C-125] gi|20137993|sp|Q9K7F0|DAPF_BACHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|10176035|dbj|BAB07131.1| diaminopimelate epimerase [Bacillus halodurans C-125] Length = 286 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 146/286 (51%), Gaps = 20/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN + +D + + + A+ + D ++LI A V Sbjct: 1 MKFTKMHGLGNSYIYVDCFKELLKEEELPALAVAVADKNKGIGSDGMILICPSDRAPV-- 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----- 115 +R+ N DGSE ++CGNG+RCV +F K +F ET+ G++ A + + + Sbjct: 59 KMRVFNNDGSEAKNCGNGLRCVAKFAFEHGYVKETSFDVETLGGLVKATVHPNDNGLVDT 118 Query: 116 ISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V+MGEP L IP L ++ + F IG + VSMGNPHAI F++ Sbjct: 119 VTVNMGEPRLGRAQIPMLGEEAAEVVAEPFTIGEKEYRL----TAVSMGNPHAIMFIDT- 173 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + G LL KH F + VN+ +V S + R WERG G+T ACG+ ACA+VV Sbjct: 174 IEDAPVEQVGPLLEKHEAFPDWVNVEFVQVVSPTEIHFRVWERGSGITQACGTGACAAVV 233 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 AS T + V+V +LGG L I W +N V MTG A+ EG Sbjct: 234 ASVLNGFTQKGQEVTVHLLGGDLTISWLENGDVLMTGAAETICEGT 279 >gi|254283982|ref|ZP_04958950.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B] gi|219680185|gb|EED36534.1| diaminopimelate epimerase [gamma proteobacterium NOR51-B] Length = 275 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 89/279 (31%), Positives = 130/279 (46%), Gaps = 9/279 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID+ N+ I ++ DQ++L+ D RI N Sbjct: 1 MHGAGNDFVVIDLISQFLNLKPAHIRFIADRQRGIGCDQVLLVEPPTQPENDFRYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGNG RC RF+ + ++ ET G + +DG I+ ++G PI D Sbjct: 61 DGSESGQCGNGARCFARFVREKSLTWKRELQVETRNGTMALTVAQDGRINANLGAPIFDT 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP D G +SMGNPHA+ V+ + +++ G L+ Sbjct: 121 TQIPFQPE---DSEDNAEYGLTVAGNTHRIGALSMGNPHAVLTVD-SVADAPVSTLGPLI 176 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP F E VN+ + S + LR +ERGVG T ACGS ACA+ V + AV+ Sbjct: 177 ESHPAFPERVNVGFMELVSKNEIRLRVFERGVGETEACGSGACAAAVHGIRRGLLDNAVT 236 Query: 248 VKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDIKTG 284 V + GG L + W DN+ V++ G +EG + ++ G Sbjct: 237 VHLPGGKLSVTWSGADNDDVWLAGPTASVFEGVVKLREG 275 >gi|295691528|ref|YP_003595221.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756] gi|295433431|gb|ADG12603.1| diaminopimelate epimerase [Caulobacter segnis ATCC 21756] Length = 284 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 101/275 (36%), Positives = 147/275 (53%), Gaps = 4/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD--DNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+ + T + I A++ DQ++ I + A++R Sbjct: 5 FLKMNGLGNDFVVVQTLTQNFEPTPEEIRAIAKRGDGGIGCDQVIAIDPPKAEGASAYVR 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E +CGNG RCV L + F+T+ G L + ++VDMG P L Sbjct: 65 FWNSDGEETGACGNGTRCVAWLLMQSAGKTEVAFDTVAGRLSGVAAGEKLVTVDMGPPRL 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPLA + D + +GP++ ++ P VSMGNPH +FFV+ + G+ Sbjct: 125 EWSQIPLAEAMDTARVE-LQVGPIDAPWVHTPVCVSMGNPHVVFFVDAPVSDEFATKTGS 183 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ HP+F EGVN+ A V S + + L+ WERG GLTAACG+ ACA+ VA+ T+R Sbjct: 184 LVEHHPLFPEGVNVGFAHVESRDHIRLKVWERGAGLTAACGTGACAAQVAAVRRGLTDRK 243 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 V+ G L IEW + + HV MTG ++ GKL Sbjct: 244 AKVEFESGALTIEWRESDGHVIMTGPVSMDFAGKL 278 >gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 279 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +G GN +++D + + A D +M + A D + Sbjct: 1 MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118 R N DG+E + CGNG+RC R+L + FT ET+ G +V + ++V Sbjct: 59 REFNPDGTEPEMCGNGIRCFSRWLYEEGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVAV 118 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L+ IP+A +++ + + VSMGNPH + FV+ D Sbjct: 119 DMGIPVLEGARIPVAGFGTERVVAQPITVAGKEYAM----TCVSMGNPHCVVFVD-DADG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L G H F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLKQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +R ++++ GG + + W ++ H+ MTG A++ + G+ Sbjct: 234 LNDVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEW 275 >gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541] gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541] Length = 279 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 84/282 (29%), Positives = 135/282 (47%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +++D + + A+ D +M++ + A D + Sbjct: 1 MEFTKWQGCGNDFVIVDFLDREPVDFAALAVRMCDRHFGVGADGLMIVCPSETA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118 R N DG+E + CGNG+RC + R++R+ FT ETI G +V + + + V Sbjct: 59 REFNPDGTEPEMCGNGIRCFARCLYDCGRIRREQFTIETIAGTMVPRILTESGEVTAVEV 118 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP+L IP+ + + + + VSMGNPH + FV+ D Sbjct: 119 DMGEPVLAGDAIPVRGFGMEPVIAQPITVEDRTYAM----TCVSMGNPHCVIFVD-DAEG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + LA G HP F +N V + +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATLAAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +RA +++ GG + + WH + H+FMTG A+ + G Sbjct: 234 LCDVLDRAAEIEVDGGVIHVAWHADGHIFMTGPAEPVFAGIW 275 >gi|319760695|ref|YP_004124633.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF] gi|318039409|gb|ADV33959.1| diaminopimelate epimerase [Candidatus Blochmannia vafer str. BVAF] Length = 277 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 138/283 (48%), Gaps = 13/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D ++T + I LS F+Q++++ D S+D Sbjct: 1 MRFSKMHGLGNDFMVVDSITQKVHVTFEKIQWLSNRYRGIGFNQLLIVEPPYDPSIDFHC 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG+RCV RF+ + +++ T G + D ISV+MGE Sbjct: 61 RIYNADGSEVYQCGNGIRCVARFVYIKKLTNKENIRISTRFGNMYVSIIDDDLISVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP + + F VVS+GNPH I VE + L Sbjct: 121 PIFEPDKIPFIFPQYQKNYILFLP-----TQTILCGVVSIGNPHCIVLVET-IESVSLNI 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F + N+S R+ E+++LR +ERGVG T ACGSAACA+V Sbjct: 175 LGPALEDHHCFPKKSNISFMRIIDSENIELRVYERGVGETQACGSAACAAVAFGIQQGLL 234 Query: 243 NRA---VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V V +LGG L + W ++M G ++G + + Sbjct: 235 IREERLVQVHLLGGSLFVSWKGIGYPLYMIGSTSYVYDGCIHL 277 >gi|149928224|ref|ZP_01916468.1| diaminopimelate epimerase [Limnobacter sp. MED105] gi|149823030|gb|EDM82271.1| diaminopimelate epimerase [Limnobacter sp. MED105] Length = 291 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 137/290 (47%), Gaps = 13/290 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S+++ F KM G GN +V+D +++ I L+ DQ++++ + A D Sbjct: 4 SNILKFTKMHGAGNDFVVLDNCANQIDLSPGLIKRLADRHFGVGADQVLVVESSELA--D 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 RI N DG EVQ CGNG RC +++ + + T ET+ GI+ + + + V+ Sbjct: 62 FKYRIFNADGQEVQQCGNGARCFAQYVFDKGLTDKNQITVETLAGIIQPELIKHNWVKVN 121 Query: 120 MGEPILDWKLIPL------ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 MG L+ + +P +R + + R + L V SMGNPH + ++ Sbjct: 122 MGPAELNPEKVPFIVEGLASRKAGGLIQYRLPVDLGPDLEELWVGVASMGNPHVVILLDQ 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + G L HP F E VN+ + + LR +ERGVG T ACG+ ACA+ Sbjct: 182 PASNDLVQRLGATLESHPRFPERVNVGFLHIVDRSRVHLRVYERGVGETLACGTGACAAA 241 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKLDI 281 V + V V GG L IEW ++ V MTG A+ +EG+ + Sbjct: 242 VVGMKMGLIAEQVDVVKAGGTLTIEWSGQQDSDVLMTGPAQTVFEGEFYL 291 >gi|302189432|ref|ZP_07266105.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae 642] Length = 276 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 96/281 (34%), Positives = 139/281 (49%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + ++ + N VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPF-EAAEQASCYTVDVDGQNIEM----AAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G + HP F VN+ V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ALGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276 >gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14] gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14] Length = 267 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 125/282 (44%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ + F KM G GN + +D AI D ++LI A D Sbjct: 2 TTKIKFTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + +K T +T GI V K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVT- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D F VSMGNPH + FVE D+ + Sbjct: 119 -------------AVTVDIGSPLETEAVDFGDQFPFQSTRVSMGNPHLVTFVE-DITQIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L + +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLH 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 R + M GG + IEW + H+ MTG A K ++G+++ Sbjct: 225 GLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEME 266 >gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531] gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531] Length = 279 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 130/282 (46%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +G GN +++D + + A D +M + A D + Sbjct: 1 MKFSKWQGCGNDFVIVDFLDHEPVDFAVLAREMCDRHFGVGADGLMAACPSETA--DVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS----ISV 118 R N DG+E + CGNG+RC R+L + + FT ET+ G +V ++V Sbjct: 59 REFNPDGTEPEMCGNGIRCFSRWLYEQGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVAV 118 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P+L+ IP+A + + + + VSMGNPH + FV+ D Sbjct: 119 DMGIPVLEGARIPVAGFGTEHVVAQPIMVAGKEYAM----TCVSMGNPHCVVFVD-DADG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L G H F +N V +R WERG G+T ACG+ CA++ A Sbjct: 174 FPLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATLTAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +R ++++ GG + + W ++ H+ MTG A++ + G+ Sbjct: 234 LNNVLDREAAIEVDGGVIHVAWREDGHIVMTGPAEQVFTGEW 275 >gi|254561878|ref|YP_003068973.1| diaminopimelate epimerase [Methylobacterium extorquens DM4] gi|254269156|emb|CAX25122.1| diaminopimelate epimerase [Methylobacterium extorquens DM4] Length = 285 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 127/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI N D Sbjct: 1 MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPGTDAFMRIYNTD 60 Query: 71 GSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 GSE +CGNG RCV + + + T ET G++ K + S +VDMG+P Sbjct: 61 GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL G Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIA VT +++ LR WERG GLT ACG+AACA+VVA+ L R Sbjct: 181 PLLEAHPIFPERANISIAEVTGRDTIKLRVWERGAGLTLACGTAACATVVAASRLRLIGR 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 A V + GG L IEW ++HV MTG E EG D+ G Sbjct: 241 AARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282 >gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601] gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601] Length = 286 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 139/285 (48%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59 + F K +G GN ++ID RG I + D ++ I + + + Sbjct: 4 ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIFDIKKICNRQFGVGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L + + ET G+ +AK Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIN-DE 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILEGQNIPTT--IEKKINSIPSHEFIEKDFSNMGYAVGMGNPHLIFFVK-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W +++ V MTG AKK + G + Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSI 283 >gi|229826428|ref|ZP_04452497.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC 49176] gi|229789298|gb|EEP25412.1| hypothetical protein GCWU000182_01801 [Abiotrophia defectiva ATCC 49176] Length = 302 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 129/296 (43%), Gaps = 29/296 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G N L ID N T ++ D I+LI + + D + Sbjct: 12 INFTKMHGCKNDYLYIDCTKNELYNPTEVSVKLSDRHTGIGSDGIILICPSK--AADFRM 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-- 122 RI N DGSE + CGNG+RCV +F+ G+ +E G I + + Sbjct: 70 RIFNADGSEAEMCGNGIRCVGKFVYDFGLTDKEEVRIETGVRSNEEETTGIIPENRIKVL 129 Query: 123 ------------------PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 PI+ IP+ + ++ + +I + VSMGN Sbjct: 130 QLKVENGNVRAATVDMGRPIITPSEIPVVSAKNEFINEPINIEGKD----WYFTCVSMGN 185 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV+ D DL G + +F N +V S L++R WERG G T A Sbjct: 186 PHAVTFVD-DTKSLDLPVIGPKFEFNEIFPNRTNTEFIKVISRTELEMRVWERGSGETLA 244 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 CG+ ACAS A+ + V+V +LGG L+I++ H+FMTG + + G + Sbjct: 245 CGTGACASAYAAILNNLVEDEVTVHLLGGDLIIKYDRATGHIFMTGPCETVFSGSI 300 >gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748] gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748] Length = 277 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + + T AI D ++++ + D + Sbjct: 1 MKLTKMHGLGNDFILFADPQGANKDYTDLAIRLCDRRTGIGADGLVIVVPSD--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSI----SV 118 RIIN DGSE + CGNG+RC + + +++FT ET+ GI+ + + +V Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEITKETFTIETLAGIMKPTLTIENGVVTLVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + K +P+ DK+ + V +G PH +VE D+ Sbjct: 119 DMGKPFFNSKDVPMNVDMDKVIDVDIDVNG----ETVTVSSVLLGVPHTEVYVE-DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS V S Sbjct: 174 PVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAVMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|189461606|ref|ZP_03010391.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136] gi|189431716|gb|EDV00701.1| hypothetical protein BACCOP_02265 [Bacteroides coprocola DSM 17136] Length = 266 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 18/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + ++ + + S D ++LI A D + Sbjct: 3 IEFTKMHGAGNDYIYVNTLRYPIDNPEELSVEWSRYHTGIGSDGLVLICPSDQA--DFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE + CGN RC+ ++L + ET+ GI + + + +V+ Sbjct: 61 RIFNADGSEARMCGNASRCIGKYLYEEGLTNKTDIQLETLSGIKILHLHLNDKNTVESVT 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP D + VSMGNPH + FV+ ++ L Sbjct: 121 VDMG---IPT---------DIHEVALGEGYIASKGIAVSMGNPHLVIFVD-EINKIKLEE 167 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L HP+F + VN+ +V + + +R WERG G+T ACG+ ACA+ VAS + Sbjct: 168 VGPALEHHPLFPDRVNVEFVQVLTDSKVRMRVWERGSGITQACGTGACATAVASAFTDRC 227 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R S+ M GG L IEW +NH++MTG A K ++GK++I Sbjct: 228 GRKSSIVMDGGTLEIEWAGDNHIYMTGPATKVFDGKIEI 266 >gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745] gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27] gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44] gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745] gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44] gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27] Length = 277 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + T AI D + ++ + + D + Sbjct: 1 MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGN +RC + +++FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + IP+ + DK+ + + V +G PH F++ D+ Sbjct: 119 DMGKPFFKAQDIPMNVNMDKV----IDVDLNVNGETVTVSSVLLGVPHTEVFID-DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS S Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAAMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 276 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 135/281 (48%), Gaps = 10/281 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A + FDQ++++ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + ++ ET G++ DG ISV+MG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTTKRQIRVETKSGVIELDIRNDGQISVNMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP G L VSMGNPHA+ V+ D+ + Sbjct: 122 APRLVPADIPFQAPAQADSYTLDVDGRQVQLA-----AVSMGNPHAVLRVD-DINSAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F VN+ +V + LR WERG G T ACG+ ACA+ VA+ Sbjct: 176 ELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAAAVAAISQGW 235 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + + + + GG L IEW V MTG A + +EG++ + Sbjct: 236 MDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276 >gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402] gi|167704565|gb|EDS19144.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402] Length = 283 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + D + + I +S D +++I D + Sbjct: 9 LHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSDQ--YDFKM 66 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISV---- 118 R+ N DGSE CGNG+RC +F+ ET G+ + DG + Sbjct: 67 RMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAKV 126 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+P+L + IP + +KM + IG + +SMGNPH + FV DL Sbjct: 127 NMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRL----TTISMGNPHTVTFVS-DLDTL 181 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G H +F VN ++ + + +R WERG G T ACG+ ACA + A Sbjct: 182 DLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACYL 241 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 H T+ V+V++LGG L IE+ + + M+G A + G ++I Sbjct: 242 NHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIEI 283 >gi|58578685|ref|YP_196897.1| diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] gi|58417311|emb|CAI26515.1| Diaminopimelate epimerase [Ehrlichia ruminantium str. Welgevonden] Length = 281 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 97/277 (35%), Positives = 139/277 (50%), Gaps = 10/277 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S +++F KM G N ++ID R + + DQ+++I + A D Sbjct: 15 SHVINFIKMHGTLNDFVIIDCREKMYH-NINFKKIAHRKTGIGCDQVIVITSSKKA--DC 71 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I N DGS+V+ CGN RCV L++ K + T E IL I V+MG Sbjct: 72 FIHIYNPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGY 131 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P WK IP+ D + P+ L P V++GNPHA+FFV+ + L Sbjct: 132 PKFHWKDIPVLHECDTL------YLPIKTELLSYPVGVNIGNPHAVFFVD-SIDDIPLTK 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H +F N+SIA+V S + LR WERG G TA+CGSAACA++VA+ + T Sbjct: 185 IGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYT 244 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N ++ + GG LLI + D+N + M G + G + Sbjct: 245 NHHATIYLQGGNLLILYKDDNTILMEGVVSYVFSGVI 281 >gi|260752485|ref|YP_003225378.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551848|gb|ACV74794.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 269 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 142/274 (51%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R + ALS DQ+++I + ++ D + I Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV++CGN RCV FL + T G+L A+ + +G VDMG P L Sbjct: 64 WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEG-ACVDMGRPRLS 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA + D + PV L+ P V+MGNPH FV DD+ D GN+ Sbjct: 118 WDEIPLAYAMDTL------SMPVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + +F E +N++I VT L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|21232928|ref|NP_638845.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766999|ref|YP_241761.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. 8004] gi|188990092|ref|YP_001902102.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. B100] gi|24418361|sp|Q8P548|DAPF_XANCP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81307014|sp|Q4UYY2|DAPF_XANC8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813254|sp|B0RNK1|DAPF_XANCB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21114764|gb|AAM42769.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572331|gb|AAY47741.1| diaminopimelate epimerase [Xanthomonas campestris pv. campestris str. 8004] gi|167731852|emb|CAP50036.1| dapF [Xanthomonas campestris pv. campestris] Length = 284 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 125/283 (44%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 + + F KM G GN +V+D+R + L+ DQI+ I + A Sbjct: 6 HTGRLRFTKMHGAGNDFVVLDLRNGTPPPDASLAARLADRHFGVGCDQILTIETPRSAEA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A RI N DGS Q CGNG RCV +L + FT ++ + G+ SV Sbjct: 66 VAAYRIWNSDGSHSQQCGNGARCVAAWLVREGTAQGDVFTIDSPFTAHRVERLDAGTYSV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F E VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPESVNVGFAQVVDPAHVRLRVYERGVGETLACGSGACAAAVVLMH 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLD 280 + R V V + GG L I W V M+G A ++G+ + Sbjct: 241 RGRVERDVRVSLPGGELRIRWAGEQAQVVMSGPAVFVFDGEWN 283 >gi|294085379|ref|YP_003552139.1| diaminopimelate epimerase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664954|gb|ADE40055.1| Diaminopimelate epimerase [Candidatus Puniceispirillum marinum IMCC1322] Length = 293 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 21/288 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDAS 59 M+ F KM G+GN +++D R I +D + DQ+++I +A Sbjct: 1 MITFLKMHGLGNDFVILDARDPDSGIGADISVRAASLVSDRRRGIGCDQLLIIRPSDNA- 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS---I 116 D F++I+N DGS +CGNG RCV ++ + ET +L A+ +R G I Sbjct: 60 -DIFMQILNQDGSVAGACGNGTRCVADYVMRDLDVDQLLIETKSTMLFAERSRIGDADLI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +V+MG LDW+ +PLA++ D + D P SMGNPHA+ FV+ D+ Sbjct: 119 AVNMGAARLDWQQVPLAQAQDTLHVDLGADAP------ALAVCQSMGNPHAVMFVD-DVA 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL + G L +F + N+SI + +R WER VG+T ACGS ACA VA+ Sbjct: 172 AIDLDAIGPKLEHADIFPDRANISIVQKLDDAKFRMRVWERSVGITQACGSGACAVGVAA 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 R + M GG ++IEW DN V MTG G LD Sbjct: 232 HRRGLAGRLSEIVMDGGSVIIEWRDNGTAGGEVIMTGPVTYVGHGVLD 279 >gi|295090071|emb|CBK76178.1| diaminopimelate epimerase [Clostridium cf. saccharolyticum K10] gi|295115936|emb|CBL36783.1| diaminopimelate epimerase [butyrate-producing bacterium SM4/1] Length = 269 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 127/286 (44%), Gaps = 26/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + +D +N A+ + D ++LI + A D + Sbjct: 1 MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS CGNG+RCV ++ RK T ET GI +V + Sbjct: 59 DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEKNGKAVQL 118 Query: 121 GEPILDWK---LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + IP + D + +SMGNPHA+ FV+ D Sbjct: 119 TVDMGRPEQTSEIPESIEVDGKEYQ--------------FIGISMGNPHAVLFVD-DTAA 163 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L S G H F + N +V + +R WERG G T ACG+ ACAS VAS Sbjct: 164 VPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVASI 223 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 T+ V V++LGG L IEW + + V+MTG A + + G++ I Sbjct: 224 LSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269 >gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008] gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008] Length = 277 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 135/284 (47%), Gaps = 14/284 (4%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM G+GN ++ D +G + T AI D + ++ + + D + Sbjct: 1 MKLTKMHGLGNDFILFADPQGTSKDYTDLAIRLCDRRTGIGADGLAILVPSE--TCDVRM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 RIIN DGSE + CGN +RC + +++FT ET+ G++ + ++V Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYEHGETTKETFTIETLAGVMKPTLTIENGIVTQVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+P + IP+ + DK+ +N + V+ +F D+ Sbjct: 119 DMGKPFFKAQDIPMNVNMDKVIDVDL---DINGETVTVSSVLLGVPHTEVFID--DITKA 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G +L KH F N++ V + + + +RTWERG G T ACG+ +CAS + S Sbjct: 174 PVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASAIMSFE 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T R V V++ G L I + ++ V MTG A++ +E +L I Sbjct: 234 KGLTGREVDVELYLGTLHISYLEDGTVLMTGPAEEVFETELPID 277 >gi|238750681|ref|ZP_04612180.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380] gi|238711071|gb|EEQ03290.1| Diaminopimelate epimerase [Yersinia rohdei ATCC 43380] Length = 261 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 129/267 (48%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + + I L+ FDQ++++ D +D RI N DGSEV C Sbjct: 1 MVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVAQC 60 Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + ++ + T G ++ N D ++ V+MGEP D + +P Sbjct: 61 GNGARCFARFVRLKGLTNKRDISVSTQTGRMILSVNEDETVCVNMGEPNFDPQAVPFRA- 119 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + H L VVSMGNPH + V+ D+ ++A G +L H F E Sbjct: 120 --TKAEKTYIFRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVALLGPVLESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 N+ +V S E + LR +ERG G T ACGS ACA+V V V++ GG L Sbjct: 175 RANIGFMQVVSREHIRLRVYERGAGETQACGSGACAAVAVGIQQELLGEEVHVELPGGSL 234 Query: 256 LIEWHDNNH-VFMTGEAKKEWEGKLDI 281 I W H ++MTG A ++G + + Sbjct: 235 HISWKGPGHPLYMTGPATHVYDGFIHL 261 >gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 291 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 98/281 (34%), Positives = 138/281 (49%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ +GN ++I+ + A+ A D ++++ Q A D +R Sbjct: 1 MDFTKLHSLGNDFILIEGDLDNSEWPETAVWACDRHFGIGGDGLLVLMPSQKA--DYRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKE---NRDGSISVDM 120 I N DGSE ++CGNG+RC+V+++ ++ T ET G+ A D I M Sbjct: 59 IFNNDGSEAEACGNGLRCLVKYILEFKEQDKQELTIETAAGVRKATISGNTSDPDIKTGM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVEDDLYH 177 GEPIL+ IP+ K + VSMGNPHAI F+E DL Sbjct: 119 GEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTLAFVSMGNPHAIEFIESDLEA 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + L G + KH MF N IARV +++R WERGVG T ACGS ACA VVAS Sbjct: 179 FPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGACAVVVASW 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + T V +K+ GG L EW + V++TG A+ + G Sbjct: 239 IMGLTEGQVDIKLPGGELKAEWAETGEVYLTGRAQVVFSGN 279 >gi|146279011|ref|YP_001169170.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025] gi|145557252|gb|ABP71865.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17025] Length = 278 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 103/273 (37%), Positives = 138/273 (50%), Gaps = 15/273 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +VID RG +++ AL FDQ+ I D + D + Sbjct: 12 FMKMHGAGNDFVVIDSRGRGAVMSAGLARALGDRHRGVGFDQLAEIRDHE--GADFALDF 69 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGN RCV ++ + R + T RG L A DG +SV+MG P L Sbjct: 70 WNSDGSRAGACGNATRCVCDYIMRDLGRDAVALVTARGRLHAVRRTDGLVSVNMGAPQLL 129 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLAR P + P V MGNPH IFFVE D DLA G Sbjct: 130 WSEIPLARDV----------VPDSLPLAGAPAAVGMGNPHCIFFVE-DAEAVDLAGQGAA 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + P+F E N+ A + + + L LR WERG G+T ACGS ACA+ VA+ T R V Sbjct: 179 VETDPLFPERTNVEFASLIAPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQV 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++M GG L ++W ++ V+++G +EG+L Sbjct: 239 VLEMDGGTLEVDWREDG-VWLSGPVAHVFEGRL 270 >gi|301630319|ref|XP_002944269.1| PREDICTED: diaminopimelate epimerase-like [Xenopus (Silurana) tropicalis] Length = 289 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 16/287 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----ASVDAFIR 65 M+G GN +V+D +++ L+ DQI+ + A +D Sbjct: 1 MQGAGNDFIVLDETQGRLGLSAAQYRFLADRHLGVGADQILSVRAPTPQAVAAGIDFEYV 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N DG EV+ CGNG RC RF+ + + S +T G++ + DG +SVDMG P Sbjct: 61 IHNADGGEVEQCGNGARCFARFVRDQGLTDKDSIRVQTRAGVIAPRLTADGRVSVDMGLP 120 Query: 124 ILDWKLIPLARSF------DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + +P S + ++ + + + + SMGNPHA+ V+ D+ Sbjct: 121 RFAPQQLPFDASGLAPTTRHQGEKWPLTLDGIAPAAHVSIAIASMGNPHAVLLVD-DVDT 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A++G L+ H F VN ++ + LR +ERG G T ACG+ ACA+VV+ Sbjct: 180 APVATWGPLIECHARFPARVNAGFLQIVDRAQVRLRVYERGAGETLACGTGACAAVVSGI 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWEGKLDIK 282 L + V V GG L I W + VF+TG A +EG++++ Sbjct: 240 RLGLLDGLVDVHTRGGRLSIAWAGGTSDPVFLTGPATTVFEGQIELP 286 >gi|283797411|ref|ZP_06346564.1| diaminopimelate epimerase [Clostridium sp. M62/1] gi|291074767|gb|EFE12131.1| diaminopimelate epimerase [Clostridium sp. M62/1] Length = 269 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 128/286 (44%), Gaps = 26/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + +D +N A+ + D ++LI + A D + Sbjct: 1 MKFTKMQGLGNDYVYVDCFKETVENPEKTAVFVSNRHFGIGSDGLILIKPSKVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS CGNG+RCV ++ RK T ET GI + +V + Sbjct: 59 DMYNLDGSRGAMCGNGIRCVGKYAYDHGIVPADRKVLTVETASGIKTLTVKEENGKAVQL 118 Query: 121 GEPILDWK---LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + IP + D + +SMGNPHA+ FV+ D Sbjct: 119 TVDMGRPEQTSEIPESIEVDGKEYQ--------------FIGISMGNPHAVLFVD-DTAA 163 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L S G H F + N +V + +R WERG G T ACG+ ACAS VAS Sbjct: 164 VPLESIGPKFECHRRFPDRTNTEFVQVIDRGHIRMRVWERGSGETMACGTGACASAVASI 223 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 T+ V V++LGG L IEW + + V+MTG A + + G++ I Sbjct: 224 LSGYTDTLVEVELLGGCLTIEWDREKDTVYMTGPAVEVFNGEIAIP 269 >gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335] gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335] Length = 323 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 99/283 (34%), Positives = 137/283 (48%), Gaps = 12/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++FAK EG+GN ++ID R +T + L D ++ D Sbjct: 39 IEFAKYEGLGNDFILIDDRDRETPRLTPEQSERLCNRNFGVGGDGVIFALKAPQ-DYDFT 97 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE + CGNG+RC +FL KS+ T+ G +V + N +I+VDMGE Sbjct: 98 MRIYNSDGSEPEMCGNGIRCFAQFLKDLGEDAKSYKVNTLAGPIVPEMNP-DTITVDMGE 156 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PILD +P + + V+ + VSMGNPHAI FV+D D A Sbjct: 157 PILDGPSVPTTLAPNSEHNSVLEQTHVDKNGKEWKISAVSMGNPHAIIFVDDLEKDIDFA 216 Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L F N+ +V S L ++ WERG G T ACG+ CA VVA+ + Sbjct: 217 VDGPALESDTGAFPAKTNVEFVQVMSPNHLKMKVWERGAGPTLACGTGTCALVVAAIRAN 276 Query: 241 KTNRA----VSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 K R V V + GG L IEW +NN ++MTG A ++G Sbjct: 277 KIPRPGKEGVRVTLPGGDLFIEWREENNRIYMTGPATLSFKGT 319 >gi|149912566|ref|ZP_01901100.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b] gi|149812972|gb|EDM72798.1| diaminopimelate epimerase [Roseobacter sp. AzwK-3b] Length = 292 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 141/285 (49%), Gaps = 19/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V+D R +T AI FDQ+ +I DA + Sbjct: 24 LPFMKMHGLGNDFVVLDARARSLEVTPALAIALADRHKGVGFDQLAVI---SQGQRDAHL 80 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RC+ RFL + T RG L A + +G +V+MG+P Sbjct: 81 TFYNADGSTSAACGNATRCIARFLMDESGQGELCLTTDRGDLYALDRGEGMTAVNMGQPQ 140 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L+W+ IPLA + D ++ P MGNPH FFVE D L FG Sbjct: 141 LEWQDIPLAEAMDTVEL----------PIEGGPSATGMGNPHCTFFVE-DAEAIPLEQFG 189 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ E N+ + VT + L +R WERGVG T A GS++CA+ VA+ T R Sbjct: 190 PRYEHHPLYPERTNVQVVSVTGPDHLRMRVWERGVGHTLASGSSSCAAAVAAARRGLTGR 249 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V + + GG L I+W ++ V+MTG ++G L T ++++ Sbjct: 250 KVRIDLDGGTLYIDWREDG-VWMTGPTAHVFDGVL---TQEFLEG 290 >gi|56551968|ref|YP_162807.1| diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4] gi|81598240|sp|Q5NNL4|DAPF_ZYMMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56543542|gb|AAV89696.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ZM4] Length = 269 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 143/274 (52%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R + ALS DQ+++I + ++ D + I Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV++CGN RCV FL + T G+L A+ + +G VDMG P L Sbjct: 64 WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEG-ACVDMGRPRLS 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA + D + PV L+ P V+MGNPH FV DD+ D GN+ Sbjct: 118 WDEIPLAYAMDTL------SMPVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNM 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + +F E +N++I VT + L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 171 IEHDQLFPERINVNIVMVTGKDHLKMRTWERGAGLTRACGTGACATFVAAKRRRLVSGKT 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7] gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7] Length = 277 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 133/283 (46%), Gaps = 15/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEGIGN + D + + I +S D +++I D + Sbjct: 3 LHFTKMEGIGNDYIYFDGINQEIPMDKEFIMKISDRHFGIGSDGMIVILPSDQ--YDFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSISV---- 118 R+ N DGSE CGNG+RC +F+ ET G+ + DG + Sbjct: 61 RMFNLDGSEAMMCGNGIRCFAKFIYDHKLSDKHVLKIETKSGLRTVELLFDGDECIGAKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+P+L + IP + +KM + IG + +SMGNPH + FV DL Sbjct: 121 NMGKPVLTCQDIPCTYAKEKMIDEPVEIGGREYRL----TTISMGNPHTVTFVS-DLDTL 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + G H +F VN ++ + + +R WERG G T ACG+ ACA + A Sbjct: 176 DLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVMYACYL 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 H T+ V+V++LGG L IE+ + + M+G A + G + I Sbjct: 236 NHYTDSKVTVELLGGCLEIEYV-DETIMMSGPAANVFNGTIKI 277 >gi|329891138|ref|ZP_08269481.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568] gi|328846439|gb|EGF96003.1| diaminopimelate epimerase [Brevundimonas diminuta ATCC 11568] Length = 299 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 153/296 (51%), Gaps = 21/296 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTH-FDQIMLIHDFQDA 58 M + +M G GN +V+ + T D + AL+ FDQ++ + + A Sbjct: 5 MSQPARPYIRMNGAGNAFIVVQAFEEPFHPTEDQVRALADPATGLGGFDQLIGVEPSETA 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR------ 112 DAF+R+ N DGS V++CGN +RCV L ++ +T+ G A+ Sbjct: 65 --DAFMRVWNADGSMVETCGNALRCVGWLLLEATDKEEVVIDTLGGPTTARRAAGRVGSG 122 Query: 113 --------DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 ++VDMG P LDW +PL+ D + +GP++ L P VSMGN Sbjct: 123 DPEGSTAATHQVTVDMGAPRLDWSQVPLSEDMDTRGIE-LQVGPIDAPVLHTPGAVSMGN 181 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PH +FF + L + G+L+ HP+F EGVN+ A V + + + LR WERG GLT A Sbjct: 182 PHVVFFTDR-LDDAFVRGSGSLVEHHPLFPEGVNVGFADVLARDHIRLRVWERGAGLTLA 240 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CG+ ACA++VAS T+R +V + GG L I+W + + HVFMTG + E G L Sbjct: 241 CGTGACAALVASARRGLTDRKAAVTVDGGELTIDWDEASGHVFMTGPVEVEGTGFL 296 >gi|150398287|ref|YP_001328754.1| diaminopimelate epimerase [Sinorhizobium medicae WSM419] gi|150029802|gb|ABR61919.1| Diaminopimelate epimerase [Sinorhizobium medicae WSM419] Length = 292 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 150/283 (53%), Positives = 189/283 (66%), Gaps = 1/283 (0%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GNKILV+DMRG D +T A L+ D T FDQIM IHD + A DA+I I+N D Sbjct: 1 MNGLGNKILVVDMRGRKDRVTRQAAIVLNADPATEFDQIMAIHDPKSAGTDAWIDIVNSD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS Q+CGNG RCVV+ L + +K+F F T+ G+L AKE+ DGSISVDMG+P W I Sbjct: 61 GSMAQACGNGTRCVVQALAAETGKKAFLFHTVAGLLEAKEHDDGSISVDMGKPRFRWDQI 120 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA F R IGP+ L +P VVSMGNPHAIF+VE+D+ YDL FG LL H Sbjct: 121 PLAEEFHDTRRIELQIGPIEAPVLHSPSVVSMGNPHAIFWVENDVSGYDLDRFGPLLENH 180 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E N+S+AR+ S + +DLRTWERG GLT ACGSAACA+ V+ +T RAV+V + Sbjct: 181 PIFPERANISVARIRSRQEMDLRTWERGAGLTLACGSAACAAAVSGARTGRTERAVTVNV 240 Query: 251 LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 GG L IEW + ++HV MTG A+ EW G LD TG + + + Sbjct: 241 PGGPLRIEWRESDDHVIMTGPAEWEWSGTLDPVTGIFERNEPE 283 >gi|237727177|ref|ZP_04557658.1| diaminopimelate epimerase [Bacteroides sp. D4] gi|229434033|gb|EEO44110.1| diaminopimelate epimerase [Bacteroides dorei 5_1_36/D4] Length = 271 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 138/275 (50%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN + ++ +R + +I S D ++LI A D +RI N Sbjct: 1 MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGN RC+ +++ +++ T ET+ GI + K + + V+ +D Sbjct: 59 DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVEEVTVDMDL 117 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 L+ +R + D V MGNPH + F++ D+ + +L + G L Sbjct: 118 PLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVNLPAIGPKL 176 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F E N+ V SL +R WERG G+T ACG+ ACA+ VA+ HK R Sbjct: 177 ENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAGRKSR 236 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 237 VRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271 >gi|119383149|ref|YP_914205.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222] gi|119372916|gb|ABL68509.1| diaminopimelate epimerase [Paracoccus denitrificans PD1222] Length = 275 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 94/275 (34%), Positives = 136/275 (49%), Gaps = 15/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID R + + A++ FDQ+ +I ++A DA + Sbjct: 13 LPFMKMHGLGNDFVVIDSRRTGALPDAATVAAIADRHRGVGFDQLAVILPGENA--DARL 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS +CGN RCV RFL ++ T +L A++ D V+MG P+ Sbjct: 71 VFFNADGSLSAACGNATRCVARFLMDETGARALRLATDHAVLAAEDAGDRLTRVNMGAPV 130 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 LDW IPLA D + +P MGNPH + F D DL FG Sbjct: 131 LDWAGIPLAEDVDTLHL----------PVPGDPVATGMGNPH-MTFFVPDAAAVDLERFG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 HP++ + N+ + +V S + + LR WERG G+T A GS +CA+VVA+ T R Sbjct: 180 PAHEHHPLYPQRTNIELVQVVSPDEIILRIWERGTGITLASGSCSCAAVVAAARRGLTGR 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L I+W ++ V+MTG ++G Sbjct: 240 RVRVNVPGGVLEIDWREDG-VWMTGPTAHVFDGVW 273 >gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514] gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514] gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 269 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 141/277 (50%), Gaps = 14/277 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN +VI+ R + + AI D ++++ D +RI N D Sbjct: 1 MHGLGNDFIVIEAREN-VDYSELAIKLCDRHFGIGADGLLVVEPS--GIADIRMRIFNAD 57 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKE----NRDGSISVDMGEPI 124 GSE + CGNG RC +++ R K ET+ G+++ + + S+ V MG PI Sbjct: 58 GSEAEMCGNGSRCFAKYVYERGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGSPI 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IP+ K + I + + +G PH I FV+ L + G Sbjct: 118 FEANKIPVKTDKQKFINEPVKIDGKVYKLTS----IRVGVPHTIVFVK-SLDENMIKELG 172 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + K +F +G N+ +V E++ +RTWERGVGLT ACGS ACAS VAS L KT R Sbjct: 173 PKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAVLGKTER 232 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V+V GG LL+EW D+N ++++G ++ + G++++ Sbjct: 233 NVNVHFKGGKLLVEWLDDNSIYLSGSVEEVFRGEIEL 269 >gi|281354876|ref|ZP_06241370.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548] gi|281317756|gb|EFB01776.1| diaminopimelate epimerase [Victivallis vadensis ATCC BAA-548] Length = 276 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 84/277 (30%), Positives = 130/277 (46%), Gaps = 10/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K G+GN ++++ + A + D ++ + + Sbjct: 1 MQFSKWHGLGNDFVIVEPEKNPGFDFRGSAEHLCDRHFGIGADGVVTVRPL--GGSAFEM 58 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG+E + CGN RCV F T GI+ K +GS+ VDMGE Sbjct: 59 RIYNSDGTETEMCGNATRCVGLYIRKNKLAAGSEFELHTRGGIVRPKVLDNGSVRVDMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L IP+A + P + VSMGNPHA+ FV D+ +L Sbjct: 119 PHLLRGEIPVAGDPASGAENLAIELP---GRQFSAVGVSMGNPHAVIFV-PDINAVELEK 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G + H +F N+ V S + +R WERG G+T ACG+ +CA+ VA +T Sbjct: 175 WGPQVECHALFPNKTNVEFVEVISDRMVRMRVWERGCGVTLACGTGSCATCVAGVVTGRT 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 R ++V + GG L I++ ++NHV+MTG A + + G+ Sbjct: 235 ARCITVLLDGGELQIDYSLNDNHVYMTGPACEVFRGQ 271 >gi|154499895|ref|ZP_02037933.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC 29799] gi|150271493|gb|EDM98750.1| hypothetical protein BACCAP_03552 [Bacteroides capillosus ATCC 29799] Length = 280 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 133/286 (46%), Gaps = 21/286 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G+GN + ++ G DN+ A+ D ++ I + A D + Sbjct: 1 MRFTKMQGLGNDYVYLNCTGGLPDNLPELAVRLSDRHFGVGADGLICICPSERA--DFGM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDGSISVDMG 121 RI N DGSE CGNG+RC+ +++ + + T ET G+ + + + Sbjct: 59 RIFNADGSEGAMCGNGIRCLGKYVYDKGLTRKTSLLTVETASGVRYLELFLRDGLVQSVL 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +L P + + VS+GNPHA+ F + +LA Sbjct: 119 VDMGRPELSPPVK-------------LMAAGRTWQAVPVSVGNPHAVVFCGG-VDALNLA 164 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +HP F + VN+ A+ L +R WERG G T ACG+ ACA++ A+ Sbjct: 165 ELGPALERHPAFPDRVNVEFAQSDDRGGLKVRVWERGSGETLACGTGACAALTAAARAGL 224 Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286 +R +V + GG L + W +N H++MTG A +EG++ ++ + Sbjct: 225 VSRHTTVHLPGGELEVRWAEENGHLYMTGPAVTVFEGEISLENENY 270 >gi|237710867|ref|ZP_04541348.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA] gi|229454711|gb|EEO60432.1| diaminopimelate epimerase [Bacteroides sp. 9_1_42FAA] Length = 271 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 8/275 (2%) Query: 11 MEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN + ++ +R + +I S D ++LI A D +RI N Sbjct: 1 MQGAGNDYIYVNTLRHPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA--DFSMRIFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE CGN RC+ +++ +++ T ET+ GI + K + + V+ +D Sbjct: 59 DGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENG-LVEEVTVDMDL 117 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 L+ +R + D V MGNPH + F++ D+ + +L + G L Sbjct: 118 PLLTNSRQINTPDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFID-DIKNVNLPAIGPKL 176 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 HP+F + N+ V SL +R WERG G+T ACG+ ACA+ VA+ HK R Sbjct: 177 ENHPLFPKRTNVEFVEVLPDGSLRMRVWERGSGITMACGTGACATAVAAYLNHKAGRKSR 236 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V+M GG L + W++ + HV+MTG A K ++G+++I Sbjct: 237 VRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEIEI 271 >gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725] gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725] Length = 278 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 95/281 (33%), Positives = 142/281 (50%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VID RG + A D I+L+ D + A D + Sbjct: 1 MLFSKMHGLGNDFIVIDARGKEDIDYNLLAKKMCHRHIGVGADGILLVLDSKLA--DIRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKE-----NRDGSIS 117 RIIN DGSE + CGNG+RC +++ R KS F ET+ GI+ + + Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVFERGIVKSTKFKVETLAGIIEPELFVNEYGLVDKVK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+P + IP+ + + N + + MG PH I FV+ DL Sbjct: 119 VNMGKPSFKREDIPMQGDPKSDAINTSIVVDGNEYRI---TSLLMGVPHTILFVD-DLEK 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ + G + KH +F N++ +V ++ +RTWERG G T ACG+ +CASV+A+ Sbjct: 175 VDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVIAAN 234 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 R SV + G L IEW D+ VFMTG A++ + G+ Sbjct: 235 LNGYAERKASVHLYFGILEIEWQDDGIVFMTGPAEEVFVGE 275 >gi|241761946|ref|ZP_04760031.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373626|gb|EER63198.1| Diaminopimelate epimerase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 269 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 98/274 (35%), Positives = 142/274 (51%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN +V+D R + ALS DQ+++I + ++ D + I Sbjct: 5 FHKMHGLGNDFIVLDARKNPIQMNPALAQALSNRHTGIGCDQLIIIGNGKN-QADVSMEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGSEV++CGN RCV FL + T G+L A+ + +G VDMG P L Sbjct: 64 WNADGSEVEACGNATRCVPVFL-----GRDVIISTAAGLLDARLSDEG-ACVDMGRPRLS 117 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA + D + PV L+ P V+MGNPH FV DD+ D GN+ Sbjct: 118 WDEIPLAYAMDTL------SMPVAWEDLKEPTAVNMGNPHV-VFVVDDVDAVDFGRLGNI 170 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + +F E +N++I VT L +RTWERG GLT ACG+ ACA+ VA+ + Sbjct: 171 IEHDQLFPERINVNIVMVTGKNHLKMRTWERGAGLTRACGTGACATFVAAKRRRLISGKT 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + + GG L+++ + H+ M G A ++G+ D Sbjct: 231 QIDLPGGRLVLDENSEGHIIMRGPATYVFKGEAD 264 >gi|240139471|ref|YP_002963946.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium extorquens AM1] gi|240009443|gb|ACS40669.1| Diaminopimelate epimerase (DAP epimerase) [Methylobacterium extorquens AM1] Length = 285 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 127/282 (45%), Positives = 164/282 (58%), Gaps = 8/282 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN I+V+D+RG +T A++ D ++ FDQ+M++HD DAF+RI N D Sbjct: 1 MHGAGNAIVVLDLRGTAVRVTPAEARAIAADVHSRFDQLMVVHDPVTPCTDAFMRIYNTD 60 Query: 71 GSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 GSE +CGNG RCV + + + T ET G++ K + S +VDMG+P Sbjct: 61 GSESGACGNGTRCVGYALLDDPAMARPAENGALTLETKAGLVAVKRITERSFTVDMGQPR 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D YDL G Sbjct: 121 LRWDEIPLAEPFLDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDSYDLGRIG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 LL HP+F E N+SIA VTS +++ LR WERG GLT ACG+AACA+VVA+ L R Sbjct: 181 PLLEAHPIFPERANISIAEVTSRDTIKLRVWERGAGLTLACGTAACATVVAASRLRMIGR 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 V + GG L IEW ++HV MTG E EG D+ G Sbjct: 241 TARVALPGGELSIEWRADDHVLMTGPVYLEGEGTFSPDLFAG 282 >gi|254456341|ref|ZP_05069770.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211] gi|207083343|gb|EDZ60769.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. HTCC7211] Length = 274 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 4/276 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R + N++ D I + D DQ++ I + DA + Sbjct: 3 IKAFKMDGLGNDFVIIDQRSQNYNLSKDQIIKICGRDFIGCDQLIFIKNSGKK--DAELE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV L+ K T G L +K + + ++G Sbjct: 61 FYNSDGSISGACGNGTRCVAELLSKESDDKEIILWTSSGTLKSKILGNNLVETEIGVAKT 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W IPL + + + + I N+ + +++GNPH +FF++ D+ YDL G Sbjct: 121 NWDEIPLKKDLNTKNLNIKIISKNNNEHIG-GTSINVGNPHVVFFID-DIEDYDLKKIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + H F E N+++A+V + + ++ WERG GLT ACG+AACA+VVA+ T++ Sbjct: 179 EIENHNYFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATVVAANINGLTDKQ 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V+ G L I +N + M G ++ I Sbjct: 239 ADVEFALGKLTISIDKDNSIHMKGPVSDIKNIEIKI 274 >gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 286 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 143/286 (50%), Gaps = 16/286 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHD------NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 F K G GN ++ID R + + D N D ++ I + + Sbjct: 6 FEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILEPDRNNY- 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSIS 117 A + I N DGSE Q CGNG+RC+V++L + K + ET GI +A+ N +G I+ Sbjct: 65 AKMIIYNSDGSEAQMCGNGIRCLVQYLHNFNKGSYSVSEYRIETKAGIKIAQYN-NGEIT 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+PIL+ K IP D F + + V MGNPH IFF++ D+ Sbjct: 124 VKMGKPILETKSIPT--KIDTKINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQ-DITK 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L+ G + KH +F E N+ +++ + +++++R WERG G T ACG+ ACA VA+ Sbjct: 181 ISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGACAVHVAAY 240 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 L N + + GG L+I W + + MTG AKK + G +K Sbjct: 241 KLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYILK 286 >gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312] gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312] Length = 286 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 138/285 (48%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59 ++F K +G GN +VID RG I + D ++ I + + + Sbjct: 4 INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIFDIKQICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L + + ET G+ +AK Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIN-DE 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILESQNIPTT--IEKKINSIPSHEFIEKNFNNMGYAVGMGNPHLIFFVK-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L G + K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AKK + G + Sbjct: 239 AYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSM 283 >gi|209551319|ref|YP_002283236.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|229813253|sp|B5ZTH4|DAPF_RHILW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|209537075|gb|ACI57010.1| Diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 301 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 151/297 (50%), Positives = 197/297 (66%), Gaps = 5/297 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWNRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 R V++ + L IEW + ++HV MTG A+ EW G LD TG W + + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGSLDPSTGLWSRDGTQEA 298 >gi|126463355|ref|YP_001044469.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029] gi|126105019|gb|ABN77697.1| diaminopimelate epimerase [Rhodobacter sphaeroides ATCC 17029] Length = 278 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 103/277 (37%), Positives = 137/277 (49%), Gaps = 16/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID RG + T+ AL FDQ+ I D + Sbjct: 11 FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 68 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RCV +L + R T T RG L A+ DG ++V+MG P L Sbjct: 69 FWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNMGAPQL 128 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLAR+ + P V MGNPH +FFVE D+ DLA G Sbjct: 129 LWSEIPLARAMETDSL----------PLEGGPAAVGMGNPHCVFFVE-DVEAVDLAGRGA 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ T R Sbjct: 178 SVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V ++M GG L ++W D V+++G + +EG L + Sbjct: 238 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 273 >gi|138896544|ref|YP_001126997.1| diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2] gi|196250903|ref|ZP_03149588.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16] gi|166224258|sp|A4ISE8|DAPF_GEOTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|134268057|gb|ABO68252.1| Diaminopimelate epimerase [Geobacillus thermodenitrificans NG80-2] gi|196209632|gb|EDY04406.1| Diaminopimelate epimerase [Geobacillus sp. G11MC16] Length = 290 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 19/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + +D+ +++ + A + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVDLFRETLPEEDLPAIARSVADVHTGIGSDGLILICPSEQAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SISV 118 RI N DGSE ++CGNG+RCV ++ + +F ET+ G++ A+ + S+++ Sbjct: 64 RIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRSFLIETLSGLVEAEVTVENGEVTSVTI 123 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMGEP L IP+ +++ + F I + VSMGNPH IF+V+ D+ Sbjct: 124 DMGEPRLRRSAIPMTGPEAEQVVAESFAIDGREYEI----TAVSMGNPHVIFYVD-DIEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ K F EGVN+ V S L R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APVTTLGPVVEKDARFPEGVNVEFVEVVSERELHFRVWERGSGVTQACGTGACAAVVASV 238 Query: 238 CLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 KT R V V + GG L I W + V MTG A+ G Sbjct: 239 LNGKTARGVETVVHLAGGDLTITWGHDGKVRMTGPAETVCTGV 281 >gi|319409456|emb|CBI83105.1| Diaminopimelate epimerase [Bartonella schoenbuchensis R1] Length = 283 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 126/284 (44%), Positives = 171/284 (60%), Gaps = 5/284 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F+KM G+GN+I+V DMR NIT AI L+ D THFDQIM IH D I Sbjct: 3 IPFSKMNGLGNQIIVADMRESAHNITPQAIFTLAVDPQTHFDQIMAIHPPIQNDTDFRIE 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS ++CGNG RCV+ +L++ KSF ET G++ + +G I VDMG P L Sbjct: 63 IWNADGSIAKACGNGTRCVIEWLSNHTLNKSFRLETPAGVVEGERQSNGLICVDMGCPHL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + K +P++R + + GP L++ +VS+GN HAIFFV+ ++ L +G Sbjct: 123 NAKDMPVSREISDTNHVKITAGP-----LQDACLVSVGNLHAIFFVDHNIQSIPLEKYGP 177 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L P+F E N+SIA +TS +SL LRTWERG GLT ACGSAACAS VA+ T R Sbjct: 178 KLEHDPLFPERCNISIAFITSQKSLTLRTWERGAGLTKACGSAACASAVAAYRRGLTERH 237 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + V + GG L I + ++NH+ MTG+A+ E+ G D TG + K Sbjct: 238 IDVNLPGGTLAIHYREDNHIVMTGQAEYEFNGLFDPLTGAYEKD 281 >gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM 15897] gi|224524974|gb|EEF94079.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM 15897] Length = 279 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 98/283 (34%), Positives = 137/283 (48%), Gaps = 16/283 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F KMEGIGN + D I +S D +++I + + D Sbjct: 1 MLKFLKMEGIGNDYVYFDGINQDVPTDETFIKKVSNRHIGIGSDGVIIILPSE--TCDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDG----SIS 117 +R+ N DGSE + CGNG+RC +F+ + T ET+ GI + N + S+ Sbjct: 59 MRMFNLDGSEGKMCGNGIRCFSKFVYDQGLTDKTTLKIETLAGIRTCELNVEDGKVTSVC 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEPI IP+ S +M I + VSMGNPH I +V D Sbjct: 119 VDMGEPITLCSDIPVNYSKVEMVNAPIEIDGNTY----YCTAVSMGNPHVIQYV--DTLD 172 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +D+ + G +F E VN +V E L +R WERG G T ACG+ ACA + AS Sbjct: 173 FDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGACAVMYASY 232 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +K + V V++LGG L IE + +FMTG A+ +EG L Sbjct: 233 LNNKCDEKVDVELLGGHLQIELR-DKKIFMTGPARTTFEGTLK 274 >gi|300024818|ref|YP_003757429.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888] gi|299526639|gb|ADJ25108.1| diaminopimelate epimerase [Hyphomicrobium denitrificans ATCC 51888] Length = 289 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 126/277 (45%), Positives = 173/277 (62%), Gaps = 1/277 (0%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F KM G+GN+I+V+D+R T+D A++ D +HFDQ+M++H + ++ +R Sbjct: 7 LPFVKMNGLGNEIVVVDLRESAKVFTADEAAAIAADGKSHFDQMMVLHPAKTPGTESLVR 66 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGSE +CGNGMRCV L + + RK F ET G+L SI+VDMGEP Sbjct: 67 IYNTDGSEAGACGNGMRCVGWILANDIGRKQFKVETRAGVLDTVVRDQTSITVDMGEPRF 126 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IPLA F IGP++ L +P VV++GNPHAIF+V+ D+ YDL G Sbjct: 127 GWQDIPLAEEFRDTRAIELQIGPIDRPVLHSPSVVNVGNPHAIFWVD-DVEAYDLGRLGP 185 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+S+A+VTS SL L+TWERG GLT ACGSAACA+ V++ T R Sbjct: 186 MLECHPVFPERANISLAQVTSPRSLRLKTWERGAGLTRACGSAACAAAVSAARKRLTERT 245 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V + GG L + W DNN + MTG + E+EG +D+ Sbjct: 246 VDVTLPGGVLNVAWADNNRILMTGPVEFEYEGVIDLS 282 >gi|330813437|ref|YP_004357676.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063] gi|327486532|gb|AEA80937.1| diaminopimelate epimerase [Candidatus Pelagibacter sp. IMCC9063] Length = 263 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 93/271 (34%), Positives = 143/271 (52%), Gaps = 8/271 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G+GN L++D R +++ I L+ +N FDQ+++I D++ + I N D Sbjct: 1 MNGLGNDFLILDNRTKPTILSNVQIRHLANRNNIGFDQLIIIESGNDSAHN--ILFYNSD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G E ++CGNG RCV FL K K + T GIL + +N + +I++DMGEPI DW+ I Sbjct: 59 GEEAEACGNGSRCVAHFLMEEKKIKKISINTKSGILNSIDNGNKNITIDMGEPIFDWEKI 118 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PL+ D + + + + +S+GNPH IFF D+ L G + H Sbjct: 119 PLSEEMDPSNV----CITLKDNSSFDGYALSVGNPHIIFFN--DIETDKLKIIGPEIENH 172 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F + N++ A++ ++ + WERG GLT ACG+ ACA+ VAS + T R V++ Sbjct: 173 KTFPKKCNVTFAKIIDQNNIKVNVWERGAGLTKACGTGACATAVASAKKNLTERLVNIHF 232 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G L I+W NN + M+G E + I Sbjct: 233 QTGKLSIDWKKNNRIHMSGPVSDIQEVNISI 263 >gi|158425334|ref|YP_001526626.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571] gi|158332223|dbj|BAF89708.1| diaminopimelate epimerase [Azorhizobium caulinodans ORS 571] Length = 317 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 110/274 (40%), Positives = 154/274 (56%), Gaps = 6/274 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G+GN+ILV+D+R +++ + A AL+ FDQ M+++ + A AF+RI Sbjct: 40 PFVKMNGLGNEILVLDLRHEPEDVPAAAARALARPGVLPFDQAMVLYPPRRADTAAFVRI 99 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DGSE +CGNG RC+ + R+ + FE+ G+L DG ++VDMG P L Sbjct: 100 LNSDGSESGACGNGTRCIAAYEAGRIGERHVLFESAAGLLDCVMQPDGQVTVDMGAPRLG 159 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLAR + L +VSMGNPHA+FFV D D+ + G Sbjct: 160 WDAIPLARPVADTSAVQIE----GFASLGPASMVSMGNPHAVFFV-PDANAVDVEALGAT 214 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+S A+V S + + L WERG G T ACG+AACA+ V++ +T R V Sbjct: 215 LEHHPLFPERANISFAQVLSPDHILLHVWERGAGRTRACGTAACATGVSTARTGRTGRKV 274 Query: 247 SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 V + GG L+I+W + HV MTG E+ G L Sbjct: 275 RVTLPGGDLVIDWRASDGHVLMTGPVALEFTGTL 308 >gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora] gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora] Length = 376 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 14/288 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI-----TSDAINALS-TDDNTHFDQIMLIHDFQDA 58 M+ F+K G+GN L+ID R N + + L D +++I Sbjct: 1 MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLCDRHFGVGADGVIIILSPTLE 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGS 115 D +RI N DG+E Q CGNG+RC+ +FL K + ET+ GI+V++ + Sbjct: 61 G-DWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKENDM 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMG PIL IP S + + I + + MGNPH + V+ D Sbjct: 120 IYVDMGIPILSPHDIPTRLSVGQDNIAIGLIE--TNGITWSVAAAGMGNPHIVIPVK-DA 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ FG LL +H F N+ +V L LRTWERGVG+T ACG+ ACA+++ Sbjct: 177 EDIDIEKFGPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACAALIV 236 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + L +++ + + GG LL+ W +NH+ + G AK ++G L + Sbjct: 237 AHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDGVLTPE 284 >gi|218682290|ref|ZP_03529891.1| diaminopimelate epimerase [Rhizobium etli CIAT 894] Length = 301 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 151/297 (50%), Positives = 198/297 (66%), Gaps = 5/297 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + + Sbjct: 242 GRKVTINVASATPPAALSIEWRERDDHVIMTGPAEWEWSGRLDPSTGLWSRDGTQEA 298 >gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21] gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21] Length = 292 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 18/294 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQD 57 + ++V F+KM G+GN +VID ++ + + + D ++ + + Sbjct: 3 ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDKKPEICEEICRRGFSVGADGVIFVTPASN 62 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS 115 D RI N DGSE + CGNG+RC +++ ++ K ET+ GI + + G Sbjct: 63 EEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGGIKEIELDVMGG 122 Query: 116 IS----VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 VDMG P IP+ ++ + N V++GNPHA+ F Sbjct: 123 EVRSSSVDMGIPTFKSVEIPMKTEKEEFLDAELDVNG----TTVNLTAVNVGNPHAVIFT 178 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E ++ DL G + HP F E N+ V + +++ TWERG G T ACG+ A A Sbjct: 179 E-NIEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTLACGTGATA 237 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 SV+A L K + V V + GG LLI ++ +FM GEA ++G ++++ Sbjct: 238 SVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVMELE 291 >gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301] gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301] Length = 286 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59 + F K +G GN +VID RG I + D ++ I + ++ + Sbjct: 4 ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIFDIKQICNRQFGIGADGVIFIEEPKEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L + + ET G+ +AK Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIN-DE 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP +K + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILECQNIPTT--IEKKINSIPSHEFIEKDFNNMGYAVGMGNPHLIFFVK-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G +L K+ +F E N+ ++ + +++ ++ WERG G T ACG+ ACA VA Sbjct: 179 ESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AKK + G + Sbjct: 239 AYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSM 283 >gi|166710516|ref|ZP_02241723.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 284 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 124/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R +D L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDADLAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + G +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQGERFIIDSPVTAHAVERLEGGRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGMPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWN 283 >gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202] gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202] Length = 286 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 137/285 (48%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTD-DNTHFDQIMLIHDFQDAS 59 + F K +G GN +VID RG I + D ++ I + + + Sbjct: 4 ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIFDIKKICNRQFGIGADGVIFIEEPNEDN 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGS 115 A + I N DGSE Q CGNG+RC+V +L + + ET G+ +AK Sbjct: 64 Y-AKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIN-DE 121 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I+V MG PIL+ + IP + + F + V MGNPH IFFV+ D+ Sbjct: 122 ITVKMGVPILESQNIPT--KIENKINSIPSHEFIQKNFKYIGYAVGMGNPHLIFFVQ-DI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L+ G + + +F E N+ ++ + +++ ++ WERGVG T ACG+ ACA VA Sbjct: 179 LSIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGACAIHVA 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + L N V + GG L I+W ++ V MTG AK+ + G + Sbjct: 239 AYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSM 283 >gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20] gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20] Length = 282 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 10/284 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D + + A S D ++LI A D Sbjct: 2 TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ F + T +T+ GI + + Sbjct: 60 FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEITLDTLSGIRMLNLHLADGKVNS 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHY 178 + + P +D P+ R VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPADEP--ADYDGKGAKPMKEQPIEVDGERYVGTTVSMGNPHLVIFV-NDIEAI 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L G L HP+F +N+ A++ + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 GLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + R + M GG L I W HV MTGEA K ++GK+++ Sbjct: 237 TGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280 >gi|241206755|ref|YP_002977851.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860645|gb|ACS58312.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 301 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 198/298 (66%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW + ++HV MTG A+ EW G++D TG W ++ + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREAE 299 >gi|56964698|ref|YP_176429.1| diaminopimelate epimerase [Bacillus clausii KSM-K16] gi|56910941|dbj|BAD65468.1| diaminopimelate epimerase [Bacillus clausii KSM-K16] Length = 282 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 95/288 (32%), Positives = 140/288 (48%), Gaps = 18/288 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM G+GN + I++ H + A+ + D ++LI Sbjct: 1 MEFTKMHGLGNSYIYINLFKEHLPEERLAETAVWLADPNRGIGSDGMILIGPSTS--CAI 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN-----RDGS 115 +RI N DGSE ++CGNG+RCV ++ K+F+ ET+ G + A R G+ Sbjct: 59 KMRIFNNDGSEAKNCGNGLRCVAKYSYEHGLVHEKAFSIETLGGPVFATVEVDEEGRVGA 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++++MG+P L + IP+ DK + VSMGNPHA+ FVE + Sbjct: 119 VAINMGQPRLTRQAIPMIGEGDKPVVGEKLEA---NGETVQVTAVSMGNPHAVMFVEQ-I 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + S G ++ KH F + VN V S L R WERG G+T ACG+ ACA+VVA Sbjct: 175 EKAPVESLGPVIEKHSAFPDWVNAEWVEVVSETELHFRVWERGSGITQACGTGACAAVVA 234 Query: 236 SGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S K V+V +LGG L I W +N V M G A+ G + + Sbjct: 235 SVLNGYAKQGVPVTVHLLGGDLTIVWQENGDVLMRGPAEYICTGNVFL 282 >gi|288553989|ref|YP_003425924.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4] gi|288545149|gb|ADC49032.1| diaminopimelate epimerase [Bacillus pseudofirmus OF4] Length = 282 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 11/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN + +D+ + + A+ + D ++L+ A V Sbjct: 1 MKFTKMHGLGNSYIYVDLFKETLEEEQLAALAVEVADKNKGIGSDGMILVCPSDVAPV-- 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDM 120 +R+ N DGSE ++CGNG+RCV +F K TF ET+ G++ A + +G + Sbjct: 59 KMRVFNNDGSEAKNCGNGLRCVAKFAYEHGYVKDQTFQIETLGGLVTATVHIEGERVHTV 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYD 179 + +L + ++ P + VSMGNPH +FFVE D+ Sbjct: 119 TVNMGKPRLTRESLPMLGSSTEKIVAEPFEVAETKLELTAVSMGNPHGVFFVE-DINQAP 177 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G ++ K F E +N+ V S L R WERG G+T ACG+ ACA+VVAS Sbjct: 178 VDTLGPIIEKDERFPEWINVEFVEVVSESELHFRVWERGSGITQACGTGACAAVVASILN 237 Query: 240 HKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +N+ +V+V +LGG L IEW ++ V MTG A+ EG + Sbjct: 238 GHSNKGESVTVHLLGGDLEIEWTESGDVLMTGAAEVICEGVFE 280 >gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM 17241] gi|167667376|gb|EDS11506.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM 17241] Length = 276 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 132/283 (46%), Gaps = 17/283 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN + I+ + +S D ++LI A D +R+ N Sbjct: 1 MHGLGNDYVYINCLNQKLKHPEEIARIVSDRHFGIGSDGLILICPSDRA--DFQMRMFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN-------RDGSISVDMGE 122 DGSE CGNG+RCV +++ + + + + V + S+ VDMG+ Sbjct: 59 DGSEGNMCGNGIRCVGKYVYDQGLTERTSIQIETKSGVRSLDLTLGPDGTVSSVRVDMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L K IP+ +D + +L VSMGNPHA+ F + D+ + LA Sbjct: 119 ASLKAKDIPVETDYDDFISQPMLVRGEVYL----VTCVSMGNPHAVVFCD-DVDNLPLAE 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L +H F EGVN ++ ++L +R WERG G T ACG+ ACASV A+ Sbjct: 174 IGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASVAAAIVNENC 233 Query: 243 N--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + V+V++LGG L I H + V M G A ++G +++ Sbjct: 234 DFDEEVTVRLLGGDLKITVHSDYTVLMDGPAVHVFDGDIELDA 276 >gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073] gi|123524732|sp|Q2RK34|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073] Length = 279 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 16/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G+GN ++++ ++ A D ++L+ + A Sbjct: 1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPSEQAR--LR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117 +RI N DGSE + CGNG+RC R++ + + ET+ GI+ + +G + Sbjct: 59 MRIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEELQVETLAGIIKPRLILEGGRVAGVR 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P L+ + IP+A + + + + VSMGNPH +FFVE D+ Sbjct: 119 VDMGAPHLEREQIPMAGTGSPVLDEPIEVNG----ETWRGTCVSMGNPHCVFFVE-DVTG 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ HP+F N+ +V + E L +R WERG G T ACG+ ACA+ VA Sbjct: 174 APVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAAVAGA 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 ++NR V+V + G L IEW +NHV+MTG A + + G + Sbjct: 234 LTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPLD 279 >gi|327190189|gb|EGE57294.1| diaminopimelate epimerase protein [Rhizobium etli CNPAF512] Length = 351 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 200/298 (67%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 52 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 111 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 112 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 171 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V++D+ YDLA Sbjct: 172 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDEDVMSYDLAR 231 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 232 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 291 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + + Sbjct: 292 GRTVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDADRGAE 349 >gi|332998247|gb|EGK17849.1| diaminopimelate epimerase [Shigella flexneri K-272] Length = 279 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 10/256 (3%) Query: 30 ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88 + + I L+ FDQ++++ D +D RI N DGSEV CGNG RC RF+ Sbjct: 30 FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89 Query: 89 TSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 + ++ T G +V D + V+MGEP + +P + ++ Sbjct: 90 RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPF-----RANKAEKTY 144 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 VVSMGNPH + V+ D+ + + G +L H F E N+ +V Sbjct: 145 IMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVETLGPVLESHERFPERANIGFMQVVK 203 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265 E + LR +ERG G T ACGS ACA+V + V V++ GG L I W H + Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPL 263 Query: 266 FMTGEAKKEWEGKLDI 281 +MTG A ++G + + Sbjct: 264 YMTGPAVHVYDGFIHL 279 >gi|239834643|ref|ZP_04682971.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] gi|239822706|gb|EEQ94275.1| diaminopimelate epimerase [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 9/274 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +VID R +SD I + DQ+++ + +RI Sbjct: 49 FIKCNGLGNDFVVIDGRSTPFRKSSDYIQWVCNRHVGIGGDQLLVFEAPESPEASVRLRI 108 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG E ++C N RC + +R ET+ G + AK D +S+ +G D Sbjct: 109 YNIDGQEAETCLNATRCAAWLIMEETERDEAVIETLGGPIRAKRAGDHKVSLSIGNAKWD 168 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W IPLA S + L +P +++GNPH ++FV+ +L D+A+ + Sbjct: 169 WPEIPLAGSLESAGAQL------ESGPLVSPIAINIGNPHLVYFVQ-NLGGLDIAALADP 221 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-A 245 + K E N+ +A VT +S+ L +ER LT ACGS ACA+V+A+ + Sbjct: 222 VQKSGYLPEQANIGVAEVTGPDSIRLVVYERPGILTQACGSGACAAVLAARRAGLISSDK 281 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V GG L +E D +TG ++G + Sbjct: 282 VTVYAPGGQLEVEVFDGETFMLTGPVDVTFDGYI 315 >gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316] gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316] Length = 307 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 31/305 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSD-AINAL--STDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G GN + +D + I + D ++ I+ D S+D + Sbjct: 3 FTKMHGCGNDYVYVDGSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDFEM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-------VAKENRDGSIS 117 + N DGS + CGNG+RCV +++ + + +N S+ Sbjct: 63 EMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVIVSAGKKKYINLEIGTDNLVFSVK 122 Query: 118 VDMGEPILDWKLIPLARSFDK-----------------MDRDRFHIGPVNHLFLRNPFVV 160 VDMG PIL +P+A D M + V Sbjct: 123 VDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDGKEWKITCV 182 Query: 161 SMGNPHAIFFVEDDL--YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 SMGNPHA+ F+ +D+ +++ G + +F N +V ++ +R WERG Sbjct: 183 SMGNPHAVVFLPEDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNVHMRVWERG 242 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN--NHVFMTGEAKKEWE 276 G T ACG+ CA+ VA T+ V+V +LGG + W N + V M G A + Sbjct: 243 TGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIMEGPATTVFT 302 Query: 277 GKLDI 281 G++D+ Sbjct: 303 GEIDL 307 >gi|190893802|ref|YP_001980344.1| diaminopimelate epimerase [Rhizobium etli CIAT 652] gi|190699081|gb|ACE93166.1| diaminopimelate epimerase protein [Rhizobium etli CIAT 652] Length = 301 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 199/298 (66%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGQ 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWNRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW + ++HV MTG A+ EW G+LD TG W + + Sbjct: 242 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSRDADRGAE 299 >gi|149908509|ref|ZP_01897171.1| diaminopimelate epimerase [Moritella sp. PE36] gi|149808343|gb|EDM68280.1| diaminopimelate epimerase [Moritella sp. PE36] Length = 269 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 130/275 (47%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + +D I L+ + FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDCVTQNVFFNNDNIRRLADRNTGIGFDQLLVVEAPYDPDLDFHYRIYNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC F+ + T G + + DG ++V+MG P L Sbjct: 61 DGSEVEQCGNGARCFASFVRHKGLTNKTKIAVSTSGGKISLQVEYDGQVTVNMGVPELAP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + + V++GNPH + V+ D+ LA G+ + Sbjct: 121 DKIPF-----RATKQEKTYILRALDSTVFCGAVAIGNPHCVTIVD-DIETAPLADLGHAI 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 A H F VN +V S + LR +ERGVG T ACG+ ACA+ V K + V Sbjct: 175 AHHERFPNRVNAGFMQVLSPDHAKLRVYERGVGETQACGTGACAAAVVGQLQGKLGQDVC 234 Query: 248 VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDI 281 +++ GG L I W VFMTG A ++G+++I Sbjct: 235 IELPGGKLQISWRGPGTPVFMTGPATHVYDGQINI 269 >gi|332559405|ref|ZP_08413727.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N] gi|332277117|gb|EGJ22432.1| diaminopimelate epimerase [Rhodobacter sphaeroides WS8N] Length = 279 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 103/277 (37%), Positives = 136/277 (49%), Gaps = 16/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID RG + T+ AL FDQ+ I D + Sbjct: 12 FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RCV +L + R T T RG L A+ DG ++V+MG P L Sbjct: 70 FWNSDGSRSGACGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNMGAPQL 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLAR+ + P V MGNPH +FFVE D DLA G Sbjct: 130 LWSEIPLARAMETDSL----------PLEGGPAAVGMGNPHCVFFVE-DAEAVDLAGRGA 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ T R Sbjct: 179 SVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V ++M GG L ++W D V+++G + +EG L + Sbjct: 239 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274 >gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155] gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155] Length = 278 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 11/277 (3%) Query: 8 FAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +V++ +++++ A + DQ +++ + A + + Sbjct: 6 FTKMHGCGNDFIVVNTFRETVPEDLSALAQDMCQRRFAVGADQFIILGSAESADANFRMD 65 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I+N DGS+V+ CGN +RC + ++ ET+ GI A DG++ + + P Sbjct: 66 ILNADGSKVEMCGNALRCAAVYAKREGLIQSDELKIETMTGISFATILEDGNVRIAVAVP 125 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + L F + VS+GNPHA+ +V+ ++ +L Sbjct: 126 STTIVDVGLDSE-----HPLFGTPLSAEQYTFPMTAVSVGNPHAVTYVD-EIDLLNLEKI 179 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F N+ +V +++R WERG G T ACGS ACA VAS Sbjct: 180 GPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVASVLHGVAK 239 Query: 244 RAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKL 279 + V + GG L IEW V+M+G A ++ Sbjct: 240 SPMKVSLKGGDLEIEWEGRGKPVYMSGSASFVFDATW 276 >gi|221640409|ref|YP_002526671.1| diaminopimelate epimerase [Rhodobacter sphaeroides KD131] gi|221161190|gb|ACM02170.1| Diaminopimelate epimerase [Rhodobacter sphaeroides KD131] Length = 279 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 103/277 (37%), Positives = 136/277 (49%), Gaps = 16/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID RG + T+ AL FDQ+ I D + Sbjct: 12 FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 69 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RCV +L + R T T RG L A+ DG ++V+MG P L Sbjct: 70 FWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVTLVTARGHLHARRREDGLVAVNMGAPQL 129 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLAR+ + P V MGNPH +FFVE D DLA G Sbjct: 130 LWSEIPLARAMETDSL----------PLEGGPAAVGMGNPHCVFFVE-DAEAVDLAGRGA 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ T R Sbjct: 179 SVETDPLFPECTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V ++M GG L ++W D V+++G + +EG L + Sbjct: 239 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 274 >gi|153806182|ref|ZP_01958850.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185] gi|149130859|gb|EDM22065.1| hypothetical protein BACCAC_00437 [Bacteroides caccae ATCC 43185] Length = 270 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 127/282 (45%), Gaps = 21/282 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D AI D ++LI + A D Sbjct: 2 TKKIKFTKMHGAGNDYIYVDTTNYPIAAPEKKAIEWSKFHTGIGSDGLILIGNSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGNG RCV + + T +T+ GI + K + +G Sbjct: 60 FSMRIFNADGSEAMMCGNGSRCVGKYVYEYGLTDKTEITLDTLSGIKILKLHVEGKTVT- 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 A + D + VSMGNPH + FV+ D+ + Sbjct: 119 -------------AVTVDMGSPLETGEVHFEDKYPFRSTRVSMGNPHLVTFVD-DITQIN 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L H +F + N+ A++ +++ +R WERG G+T ACG+ ACA+ VA+ Sbjct: 165 LPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACATAVAAFIN 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 T R + M GG + IEW + + H+ MTG A K ++G+++ Sbjct: 225 ELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEIE 266 >gi|257413877|ref|ZP_04744546.2| diaminopimelate epimerase [Roseburia intestinalis L1-82] gi|257201933|gb|EEV00218.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] Length = 288 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 17/289 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M+ +M F KM+ GN + ID + N+ A D ++LI Sbjct: 1 MRITM-KFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG--- 114 D +R+ N DGSE + CGN +R V +++ + ET+ G+ Sbjct: 59 -DFRMRMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLV 117 Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 +I D+GEP L+ K+IP+ + D+ + VS GNPH FV+ Sbjct: 118 SNIRADIGEPRLNTKVIPVNTNLDQFVEQPVEVLDKTFHI----TAVSWGNPHCAMFVD- 172 Query: 174 DLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + D+ +G + +F N++ A + + +R WERG G T CG+ + Sbjct: 173 SVADLDVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTA 232 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 VVA +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 233 VVAGVLTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 281 >gi|188586527|ref|YP_001918072.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229813235|sp|B2A663|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 25/297 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS--VDAF 63 + F KM G+GN ++ M+ N A D +++ ++++ D Sbjct: 1 MKFEKMHGLGNDFIL--MKDFQRNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINADYQ 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS------ 115 +RI N DGSE + CGN +RC+ ++ T K T GI + + Sbjct: 59 MRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKRLAIATTAGIKRVEIVENFDLMGEIN 118 Query: 116 -----------ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + V+M +P+L IPLA D+ D R + VS G Sbjct: 119 LSGMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYGIYYL-TEVSTGP 177 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 PHA+ FV++ L L G ++ KH +F G N+ +V S L ++ WERG G T A Sbjct: 178 PHAVIFVQNLLPEEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWERGAGKTLA 237 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 CG+ ACA VVA+ N V++ GG L I W +N ++M G A+ + G+L+ Sbjct: 238 CGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYSGELN 294 >gi|160889460|ref|ZP_02070463.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492] gi|317479966|ref|ZP_07939081.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36] gi|156860977|gb|EDO54408.1| hypothetical protein BACUNI_01884 [Bacteroides uniformis ATCC 8492] gi|316903911|gb|EFV25750.1| diaminopimelate epimerase [Bacteroides sp. 4_1_36] Length = 282 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 10/284 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D + + A S D ++LI A D Sbjct: 2 TRAIKFTKMHGAGNDYIYVDTTQYPISHPEELARAWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ F + +T+ GI + + Sbjct: 60 FSMRIFNADGSEARMCGNASRCIGKYLFDYGLTSKTEIALDTLSGIRMLNLHLADGKVNS 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN-PFVVSMGNPHAIFFVEDDLYHY 178 + + P +D P+ R VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPADEP--ADYDGKGAKPMKEQPIEVDGERYVGTTVSMGNPHLVIFV-NDIEAI 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G L HP+F +N+ A++ + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 DLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + R + M GG L I W HV MTGEA K ++GK+++ Sbjct: 237 TGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280 >gi|116254272|ref|YP_770110.1| diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841] gi|115258920|emb|CAK10029.1| putative diaminopimelate epimerase [Rhizobium leguminosarum bv. viciae 3841] Length = 304 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 150/298 (50%), Positives = 197/298 (66%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 5 SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKAEGTDA 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 65 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKVFTFQTVAGILNAVEHEDGTISVDMGR 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 125 PVFDWDRIPLAEEFHDTSRIELQIGPIDKPVLHSPSAMSMGNPHAIFWVDRDVMSYDLAR 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 185 FGPLLENHPMFPERANITLAQVTSPTSVTTRTWERGAGLTLACGSAACSAAVSAARTGRT 244 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + L IEW + ++HV MTG A+ EW G++D TG W ++ + Sbjct: 245 GRKVTINVASAKPPATLSIEWRERDDHVIMTGPAEWEWSGRVDPSTGLWSREGTREAE 302 >gi|188582087|ref|YP_001925532.1| diaminopimelate epimerase [Methylobacterium populi BJ001] gi|229807500|sp|B1ZDT1|DAPF_METPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|179345585|gb|ACB80997.1| Diaminopimelate epimerase [Methylobacterium populi BJ001] Length = 296 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 130/286 (45%), Positives = 167/286 (58%), Gaps = 8/286 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN I+V+D+RG + A++ D ++ FDQ+M++HD DAF+RI Sbjct: 8 RFLKMHGAGNAIVVLDLRGTSIRVAPAEARAIAADAHSRFDQLMVVHDPVTPGTDAFMRI 67 Query: 67 INCDGSEVQSCGNGMRCVVRF------LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGSE +CGNG RCV + + T ET G++ K D S +VDM Sbjct: 68 YNTDGSESGACGNGTRCVGYALLDDPAMARPAENGCLTLETKAGLVAVKRVTDRSFTVDM 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D +DL Sbjct: 128 GQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPDTFDL 187 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G LL HP+F E N+SIA+VTS +++ LR WERG GLT ACG+AACA+VVA+ L Sbjct: 188 GRIGPLLEAHPIFPERANISIAQVTSRDTIKLRVWERGAGLTLACGTAACATVVAAARLR 247 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 RA V + GG L IEW ++HV MTG E EG L D+ G Sbjct: 248 MIGRAARVALPGGELSIEWRADDHVLMTGPVFLEGEGSLSPDLFAG 293 >gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4] gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4] Length = 272 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 91/278 (32%), Positives = 134/278 (48%), Gaps = 15/278 (5%) Query: 11 MEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M GIGN + ++ + S AI D +++I D D +R+ N Sbjct: 1 MHGIGNDYIYVNGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPSDD--CDFKMRMFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK-----ENRDGSISVDMGE 122 DGSE + CGN RC+ +F+ + + T ET+ G+ K + +++VDMGE Sbjct: 59 DGSESEMCGNASRCIGKFVYDKGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDMGE 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + LIP + + + N N VSMGNPHA+ F + DL Sbjct: 119 PIFESGLIPTTINKPSIINEPVTF---NSEIKYNITCVSMGNPHAVIFTTG-IDKLDLNK 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +F N V S + + +R WERG G T ACG+ ACASVVA+ T Sbjct: 175 IGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVAAVLNGHT 234 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R +V++LGG L IEW + +N V++TG A +EG + Sbjct: 235 GRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272 >gi|227498959|ref|ZP_03929098.1| diaminopimelate epimerase [Acidaminococcus sp. D21] gi|226904410|gb|EEH90328.1| diaminopimelate epimerase [Acidaminococcus sp. D21] Length = 289 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 126/287 (43%), Gaps = 13/287 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN L ++ +S + D ++ I A D + Sbjct: 1 MKFTKMQGCGNDYLYVNCMDGMIPEPGKISAYVSPRHLSVGSDGLICICPSDKA--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 R+ N D SE CGNG RC+ +F+ + ++ T ET+ GI + S +V Sbjct: 59 RMFNADASEGMMCGNGSRCIAKFVYDKGLTQKNPITLETLSGIKTIAMDVADGKVVSATV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PI D IP+ + + VSMGNPH + FVE D+ Sbjct: 119 DMGVPITDPSSIPMTWEKSICLDETITVTVDGAPLSLRGTGVSMGNPHFVTFVE-DVATA 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ F E VN+ + + R WERG G T ACG+ ACA + Sbjct: 178 PVEKVGRVIEHSSYFPERVNVEFVEIVDDNHVKFRVWERGSGETLACGTGACAVAYTAIT 237 Query: 239 LHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 L K R ++V+ +GG L + + + H+ M G A +EG+++I Sbjct: 238 LGKAGRRDQFLTVEAVGGPLQLNYRSDGHMMMKGPAVTVYEGEMEIP 284 >gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885] gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885] Length = 301 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 91/288 (31%), Positives = 134/288 (46%), Gaps = 12/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + KM G+GN L +D A+S D ++L+ ++A Sbjct: 15 LRLTKMHGLGNNYLFLDGLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGS---- 115 +RI N DGSE + CGNG+RC+ R + R + FT ET G + + + + Sbjct: 75 FRMRIFNADGSEGEMCGNGIRCLARLVYDRGYTRAEEFTVETGAGPIRPRLHLENGEVVA 134 Query: 116 ISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P L+ IP+A ++ + +SMGNPH DD Sbjct: 135 VTVDMGVPRLERGAIPMAGPAGERAVEVPLEVEAAGERRTFTVTALSMGNPHC-VVFVDD 193 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DLA G HP F + VN +V S + + +R WERG G T ACG+ ACA V Sbjct: 194 VAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGPTLACGTGACAVAV 253 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A +T R V+V++ GG L I W ++ HV+MTG A + D + Sbjct: 254 AGAVTGRTGRRVTVELPGGALDIRWDEDGHVYMTGPAAYIADVTYDPR 301 >gi|88658257|ref|YP_506881.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas] gi|88599714|gb|ABD45183.1| diaminopimelate epimerase [Ehrlichia chaffeensis str. Arkansas] Length = 267 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 95/278 (34%), Positives = 141/278 (50%), Gaps = 12/278 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R NI AI + DQI++I + + A D F Sbjct: 1 MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ + + T E IL + + V++G Sbjct: 57 MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP ++ D + P+ L +P +++GNPHAIFFV+ + L Sbjct: 117 KFHWTDIPTSQECDTL------HLPIELEMLSDPVGINVGNPHAIFFVD-SIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + + LR WERG G TA+CGS ACA++VA+ TN Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V + GG LLI + +N + M G + G + Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYIFNGIYRV 267 >gi|197336395|ref|YP_002157270.1| diaminopimelate epimerase [Vibrio fischeri MJ11] gi|197317885|gb|ACH67332.1| diaminopimelate epimerase [Vibrio fischeri MJ11] Length = 261 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 90/267 (33%), Positives = 132/267 (49%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + D I L+ FDQ++++ D D RI N DGSEV+ C Sbjct: 1 MVVDCLTQNIFFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + + S + T +G ++ K D I+V+MGEP+ + IP Sbjct: 61 GNGARCFARFVRMKGLTNKTSISVSTKKGKMILKVEDDDQITVNMGEPVFEPNKIPFKA- 119 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 ++ ++ V+ L + VSMGNPH V DD+ YD+ +G L+ H F E Sbjct: 120 ---TQAEKTYLLRVDDKTLFSG-AVSMGNPHC-VTVVDDVDAYDVDKYGPLVESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 VN ++ S + LR +ERG G T ACGS AC +V V V + GG L Sbjct: 175 RVNAGFMQIISPNEVKLRVYERGAGETQACGSGACGAVAVGIMQELLGEEVKVSLPGGDL 234 Query: 256 LIEWHDNNH-VFMTGEAKKEWEGKLDI 281 I W + +FMTG A ++G+L I Sbjct: 235 YIVWQGSGKPLFMTGPATHVYDGQLSI 261 >gi|167648823|ref|YP_001686486.1| diaminopimelate epimerase [Caulobacter sp. K31] gi|189082829|sp|B0T542|DAPF_CAUSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|167351253|gb|ABZ73988.1| Diaminopimelate epimerase [Caulobacter sp. K31] Length = 289 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 9/280 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-------NTHFDQIMLIHDFQDASV 60 F KM G+GN +VI+ + T++ I A++ DQ++ I + Sbjct: 5 FLKMNGLGNDFVVIETLTQPFHPTAEEIRAIAKRPNAKEGEGGIGCDQVIAIDPPRAEGA 64 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A++R N DG E +CGNG RCV L ++ S F+T+ G L K D ++VDM Sbjct: 65 SAYVRFWNSDGEETGACGNGTRCVAWLLMQSGQKDSVAFDTVAGRLSGKMAGDKLVTVDM 124 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P L W IPLA D + + +GP++ + P VSMGNPH +FFV+ + Sbjct: 125 GQPGLAWNQIPLAEEMDTVGIE-LQVGPIDAPLVHTPGCVSMGNPHVVFFVDAPVSDAFA 183 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+L+ HP+F EGVN+ A + + + + L+ WERG GLTAACG+ ACA+ VA+ Sbjct: 184 RGTGSLVEHHPLFPEGVNVGFAHIAARDHIKLKVWERGAGLTAACGTGACAAQVAAVRRG 243 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 T+R V+ G L IEW + + HV MTG E+ GKL Sbjct: 244 LTDRVAKVEFESGALTIEWREADGHVIMTGPVTMEFVGKL 283 >gi|291538363|emb|CBL11474.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4] Length = 284 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + ID + N+ A D ++LI D + Sbjct: 1 MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 R+ N DGSE + CGN +R V +++ + ET+ G+ +I Sbjct: 59 RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GEP L+ K+IP+ + D+ + VS GNPH FV+ + Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDKTFHI----TAVSWGNPHCAMFVD-SVADL 173 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ +G + +F N++ A + + +R WERG G T CG+ +VVA Sbjct: 174 DVERYGKTIEHMTSLFPSKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|291535865|emb|CBL08977.1| diaminopimelate epimerase [Roseburia intestinalis M50/1] Length = 284 Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + ID + N+ A D ++LI D + Sbjct: 1 MKFTKMQAFGNDYVYIDAIHQNITNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 R+ N DGSE + CGN +R V +++ + ET+ G+ +I Sbjct: 59 RMFNPDGSEGEMCGNALRSVGKYVYDHKLTDKTELVIETLGGMQHLNLTVTDGLVSNIRA 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GEP L+ K+IP+ + D+ + VS GNPH FV+ + Sbjct: 119 DIGEPRLNTKVIPVNTNLDQFVEQPVEVLDKTFHI----TAVSWGNPHCAMFVD-SVADL 173 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ +G + +F N++ A + + +R WERG G T CG+ +VVA Sbjct: 174 DVERYGKTIEHMTSLFPNKTNVTFAEFVKRDYIKIREWERGTGETIGCGTGCSTAVVAGV 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 +T+R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 LTGRTDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|77464515|ref|YP_354019.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1] gi|123591013|sp|Q3IZB6|DAPF_RHOS4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|77388933|gb|ABA80118.1| diaminopimelate epimerase [Rhodobacter sphaeroides 2.4.1] Length = 276 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 102/277 (36%), Positives = 135/277 (48%), Gaps = 16/277 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI-TSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID RG + T+ AL FDQ+ I D + Sbjct: 9 FMKMHGAGNDFVVIDSRGRGGALVTAGLARALGDRHRGVGFDQLAEIR--DQEGADCALD 66 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGN RCV +L + R T RG L A+ DG ++V+MG P L Sbjct: 67 FWNSDGSRSGTCGNATRCVSDYLMRDLGRDEVNLVTARGRLHARRREDGLVAVNMGAPQL 126 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPLAR+ + P V MGNPH I+FVE D DLA G Sbjct: 127 LWSEIPLARAMETDSL----------PLEGTPSAVGMGNPHCIYFVE-DAEAVDLAGRGA 175 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + P+F E N+ A + + L LR WERG G+T ACGS ACA+ VA+ T R Sbjct: 176 AVETDPLFPERTNVEFASLIGPDRLRLRVWERGAGITLACGSGACATAVAAARRGLTGRQ 235 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V ++M GG L ++W D V+++G + +EG L + Sbjct: 236 VRLEMDGGVLEVDWRDEG-VWLSGPVARVFEGHLSPE 271 >gi|182680304|ref|YP_001834450.1| diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC 9039] gi|229807511|sp|B2IEM1|DAPF_BEII9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|182636187|gb|ACB96961.1| Diaminopimelate epimerase [Beijerinckia indica subsp. indica ATCC 9039] Length = 297 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 110/282 (39%), Positives = 147/282 (52%), Gaps = 9/282 (3%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM G+GN I+V+D+RG I++ A+ HFDQ+M++HD AF+RI N Sbjct: 10 TKMNGLGNAIVVLDLRGTGIVISAAEARAIGQGKGLHFDQLMVLHDPLSPGSAAFMRIYN 69 Query: 69 CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DGS +CGNG RCV ET G L + + SVDMG+P Sbjct: 70 IDGSLAGACGNGTRCVAWTLLREDHRIGAELMLETAAGQLACLKLAEDRFSVDMGKPAFA 129 Query: 127 WKLIPLARSFDKMD-----RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 W IPLA + RD + PV+ LR +V+MGNPHA+ FV D DLA Sbjct: 130 WDAIPLAHPVPDTNAVDLARDLAVLPPVDPDALRKASMVNMGNPHAVLFV-ADQDACDLA 188 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G +L HP+F + N+SIA V S + + L+ WERG G T ACGSAACA++VA+ Sbjct: 189 LVGPVLEHHPLFPDRANISIATVVSPDHIVLKVWERGAGATLACGSAACATLVAAVRHGL 248 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 R + + GG L I W ++HV MTG E+ +LD Sbjct: 249 AAREARISLPGGDLTIAWRAADDHVIMTGPVTFEFTTRLDPS 290 >gi|323167557|gb|EFZ53263.1| diaminopimelate epimerase [Shigella sonnei 53G] Length = 279 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 10/256 (3%) Query: 30 ITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL 88 + + I L+ FDQ++++ D +D RI N DGSEV CGNG RC RF+ Sbjct: 30 FSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 89 Query: 89 TSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 + ++ T G +V D + V+MGEP + +P + ++ Sbjct: 90 RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGEPNFEPSAVPF-----RANKAEKTY 144 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 VVSMGNPH + V+ D+ + + G +L H F E N+ +V Sbjct: 145 IMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVETLGPVLESHERFPERANIGFMQVVK 203 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-V 265 E + LR +ERG G T ACGS ACA+V V V++ GG L I W H + Sbjct: 204 REHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPL 263 Query: 266 FMTGEAKKEWEGKLDI 281 +MTG A ++G + + Sbjct: 264 YMTGPAVHVYDGFIHL 279 >gi|218513924|ref|ZP_03510764.1| diaminopimelate epimerase [Rhizobium etli 8C-3] Length = 297 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 150/296 (50%), Positives = 199/296 (67%), Gaps = 5/296 (1%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + Sbjct: 1 MMSATVEFARMNGLGNKILVVDMRGRPDKVTPAAAVALNADPETEFDQIMAIHDPKADGT 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DAFI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDM Sbjct: 61 DAFIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P+ DW IPL+ F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDL Sbjct: 121 GKPVFDWDRIPLSEEFHDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDRDVMSYDL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A FG LL HPMF E N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ Sbjct: 181 ARFGPLLENHPMFPERANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTG 240 Query: 241 KTNRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 +T R V++ + L IEW + ++HV MTG + EW G+LD TG W + + Sbjct: 241 RTGRKVTINVASAKPPATLSIEWRERDDHVIMTGPTEWEWSGRLDPATGLWSRDAD 296 >gi|90421125|ref|ZP_01229027.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1] gi|90334617|gb|EAS48397.1| diaminopimelate epimerase [Aurantimonas manganoxydans SI85-9A1] Length = 304 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 145/284 (51%), Positives = 193/284 (67%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V FA+M G+GN+I+V+D+RG I++ A AL+ D T FDQIM IHD + DA++R Sbjct: 13 VAFARMNGLGNEIVVVDLRGSAARISAAAARALAEDPATRFDQIMAIHDPRLDGTDAYVR 72 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IIN DGSE ++CGNG RCVV+ L + R+ FTFET GIL A E DG I+VDMG P Sbjct: 73 IINRDGSEAEACGNGTRCVVQALAAETGRRDFTFETRAGILTAFERDDGLIAVDMGRPRF 132 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F IGP++ L +P V SMGNPHAIF+V+ D++ Y+L FG Sbjct: 133 GWSEIPLSEEFSDTRAIELQIGPIDAPILHSPSVASMGNPHAIFWVDRDVWSYELDRFGP 192 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +L HP+F E N+SIA+VT+ ++L LRTWERGVGLT ACGSAACA+ V++ +T R Sbjct: 193 VLENHPLFPERANISIAQVTAPDALTLRTWERGVGLTRACGSAACAAAVSATRTRRTGRI 252 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V+V + GG LLI+W D++HV MTG A+ W G+LD TG +++ Sbjct: 253 VTVTVPGGDLLIDWRDDDHVIMTGPAEWNWSGRLDPATGAYVRD 296 >gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831] gi|29839324|sp|Q8ENX2|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831] Length = 286 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 141/283 (49%), Gaps = 17/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN + ID+ + + D +S D ++LIH DA D Sbjct: 3 IPFTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA--DV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK------ENRDGSI 116 +RI N DGSE +SCGNG+RC ++ + F + + N+ + Sbjct: 61 GMRIFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKKFHIQTKANIVEAEVSVDNNKVNQV 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++DMGEPIL IP+ + D + + ++ VSMGNPH +FFV+ D+ Sbjct: 121 TIDMGEPILARNEIPMMGNNDVKVVNEPFVVAGETQYI---TAVSMGNPHGVFFVD-DIE 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G + K F E +N+ V S L+ R WERG G+T ACG+ ACA+VVA+ Sbjct: 177 KAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVVAA 236 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 K + + V + GG L IEW ++NHV+MTG A+ G Sbjct: 237 TLNEKVTKSHPIVVHLAGGDLNIEWKEDNHVWMTGPAEVIATG 279 >gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 277 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 136/283 (48%), Gaps = 14/283 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +V + + + A D ++++ D + Sbjct: 1 MKFTKMNGLGNDFIVFENLDNEEYDYDILARKLCDRHFGIGADGLLIVEPS--GIADIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSI----SV 118 RIIN DGSE + CGNG RC +++ K+ + ET+ GI++ + + V Sbjct: 59 RIINSDGSEAEMCGNGARCFAKYVYENGIVKKDKMSVETLSGIIMPELIFKDDVVEKVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG PI +IP+ + I ++ + +G PH I FV + + Sbjct: 119 HMGSPIFRTDMIPVKTDKKSFIEETIKIDGRTYI----VTSLLVGVPHTIIFV-NSIDKN 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + + G L+ K +F G N+ +V ++ +RTWERG GLT ACG+ ACAS VAS Sbjct: 174 MILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACASAVASAL 233 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 KT R V V G L IEW +N++++TG A++ + G++ I Sbjct: 234 TEKTKRNVYVHFKKGDLYIEWLLDNNIYLTGIAEEVFTGEIKI 276 >gi|73666659|ref|YP_302675.1| diaminopimelate epimerase [Ehrlichia canis str. Jake] gi|72393800|gb|AAZ68077.1| diaminopimelate epimerase [Ehrlichia canis str. Jake] Length = 267 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 140/273 (51%), Gaps = 10/273 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+DF KM G N ++ID R N D + DQI++I + A D F+ Sbjct: 1 MIDFIKMHGTLNDFVIIDCRSKFYN-NIDYKAIANRKTGIGCDQIIVITKSEKA--DCFM 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS+V+ CGN RCV L++ ++ + T E IL + ++ V+MG Sbjct: 58 HIYNADGSKVEMCGNAARCVAYLLSNEKQKNNVTIELADRILSCLRISENTVQVNMGIAK 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IP+++ D + P+ L +P +++GNPHAIFFV + + L G Sbjct: 118 FHWTDIPISQECDTL------HLPITLEMLSDPVGINVGNPHAIFFV-NSIETIPLDKLG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L H +F + N+SIA + S + LR WERG G TA+CGS ACA++VA+ T+ Sbjct: 171 PKLENHNLFPKRANISIAEILSRNKIKLRVWERGTGETASCGSGACAALVAAVRRQYTDT 230 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 ++ + GG LLI + ++N + M G + G Sbjct: 231 TATICLQGGNLLISYQNDNTILMEGMVSYTFHG 263 >gi|319407863|emb|CBI81516.1| Diaminopimelate epimerase [Bartonella sp. 1-1C] Length = 283 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 128/290 (44%), Positives = 174/290 (60%), Gaps = 8/290 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++ F+KM G+GNKI+V DMR NIT AI AL+ + T+FDQ+M IH + Sbjct: 1 MET---PFSKMNGLGNKIIVADMRESTHNITLQAILALAKNPQTYFDQLMTIHPSIKNEI 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I I N DGS+ Q+CGNG RCV+ +LT +SF ET GI+ K +G ISV+M Sbjct: 58 NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + K +P+AR + GP L++ +VS+GN HAIFFVE+++ L Sbjct: 118 GRPNFNAKNMPIAREVADTNHVEITAGP-----LKDASLVSIGNLHAIFFVENNIEDIPL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G L P+F E N+SIA VTS SL LRTWERG GLT ACGSAACAS V + Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R + V +LGG L I + +++H+ MTG + E+ G L+ TG + K + Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHIIMTGPVEYEFSGLLNPLTGDYKKDS 282 >gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697] gi|217986557|gb|EEC52892.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697] Length = 283 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 130/283 (45%), Gaps = 10/283 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM G GN + +D N + + D ++LI D Sbjct: 2 TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKEWSALHTGIGSDGLVLIGRS--GKAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ + + T +T+ GI K + + + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVENNKVDT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHY 178 + + P +D + P+ +R VSMGNPH + FV +D+ Sbjct: 120 VTVDMGIPACEP--ACYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV-NDITKV 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G L HP F +N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 177 DLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACATAVAAFL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 ++ R +V M GG L IEW HVFMTG A + ++G+ + Sbjct: 237 TGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279 >gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii L2-63] Length = 1350 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 144/289 (49%), Gaps = 20/289 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM+GIGN + N + A+ D I+L+ + A DA Sbjct: 1070 MLKFTKMQGIGNDYIYCSTFDQEISNPEALAVRLSDRHFGIGGDGIILVCPSKVA--DAK 1127 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVAKE----NRDG 114 +++ N DGSE + CGNG+RCV +FL T ET+ GI K + Sbjct: 1128 MKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAYTSGGKVN 1187 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + VDMG+ ILD K IP+A DK+ I N+ N VSMGNPH + F++ D Sbjct: 1188 RLRVDMGKAILDPKEIPVALDGDKVVDRTVEIAGKNY----NITCVSMGNPHCVVFMD-D 1242 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + D+ + G +F E VN V ++ +R WERG G T ACG+ ACA V Sbjct: 1243 IDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETWACGTGACAVAV 1302 Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ K + +K+ GG L+I + + V+MTG A+K +EG++++ Sbjct: 1303 AACENGFCKKGEDIKIKLKGGDLIINYT-DETVYMTGNAEKVFEGEVEV 1350 >gi|150400642|ref|YP_001324408.1| diaminopimelate epimerase [Methanococcus aeolicus Nankai-3] gi|166225729|sp|A6UTH4|DAPF_META3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|150013345|gb|ABR55796.1| Diaminopimelate epimerase [Methanococcus aeolicus Nankai-3] Length = 295 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +VI D ++ ++ + + D ++ + D D Sbjct: 3 LNFTKMHGLGNDYIVINEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSI---- 116 RI N DGSE + CGNG+RC +F+ R+ +K+ ET+ G+ V++ N + +I Sbjct: 63 IRFRIFNSDGSEAEMCGNGIRCFSKFVYERVMQKNPLNVETMGGLRVSEMNIENNIVKSI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVED 173 V MG P + K IP+ + L N VV++GNPHA+ F++D Sbjct: 123 KVFMGAPTFELKDIPMVVEGKSENDVFLDEEIELKNALLNSVKLSVVNVGNPHAVIFMKD 182 Query: 174 DLYHY-----DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + L G + H +F E +N+ + + + + + TWERG G T ACG+ Sbjct: 183 NNLKAPFIRTHLNILGKEIEHHSVFPEKINVHFVEIVNPQEIKIITWERGAGYTTACGTG 242 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +SV+ + L KT V + GG L IE ++ V+M G+A ++G+L Sbjct: 243 TTSSVIIANKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMEGDAVIVYDGEL 292 >gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA] gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA] Length = 283 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 136/287 (47%), Gaps = 18/287 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM G GN + +D N + + D ++LI D Sbjct: 2 TRIIKFTKMHGAGNDYIYVDTTRYPIGNPEKLSKEWSALHTGIGSDGLVLIGRS--GKAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGIL----VAKENRDGS 115 +RI N DGSE + CGN RC+ + + T +T+ GI ++N+ + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYKLTSKTEITLDTLSGIKTLKLHVEDNKVDT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDD 174 ++VDMG P + +D + P+ +R VSMGNPH + FV +D Sbjct: 120 VTVDMGIPACEP------TCYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFV-ND 172 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL G L HP F +N+ A+V + +R WERG G+T ACG+ ACA+ V Sbjct: 173 ITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGACATAV 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 A+ ++ R +V M GG L IEW HVFMTG A + ++G+ + Sbjct: 233 AAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAE 279 >gi|319404903|emb|CBI78504.1| Diaminopimelate epimerase [Bartonella rochalimae ATCC BAA-1498] Length = 283 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 129/290 (44%), Positives = 173/290 (59%), Gaps = 8/290 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++ F+KM G+GNKI+V DMR NIT AI AL+ + T+FDQ+M IH + Sbjct: 1 MET---PFSKMNGLGNKIIVADMRESTHNITQQAILALAKNPQTYFDQLMTIHPSIKNEI 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I I N DGS+ Q+CGNG RCV+ +LT +SF ET GI+ K +G ISV+M Sbjct: 58 NFRIEIWNSDGSKAQACGNGTRCVIEWLTKHNLGESFQLETPAGIVEGKRQANGLISVNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P D K +P+AR + GP L++ +VS+GN HA FF E+++ H L Sbjct: 118 GRPNFDAKNMPIAREVADTNHVEIRAGP-----LKDASLVSIGNLHAYFFCENNIEHIPL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G L P+F E N+SIA VTS SL LRTWERG GLT ACGSAACAS V + Sbjct: 173 EKYGPKLENDPLFPERCNISIASVTSRNSLILRTWERGAGLTKACGSAACASAVTAYRRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R + V +LGG L I + +++HV MTG + E+ G L+ TG + K + Sbjct: 233 LTERCIDVNLLGGNLSILYQEDDHVIMTGPVEYEFSGLLNPLTGDYKKDS 282 >gi|227872769|ref|ZP_03991090.1| diaminopimelate epimerase [Oribacterium sinus F0268] gi|227841395|gb|EEJ51704.1| diaminopimelate epimerase [Oribacterium sinus F0268] Length = 275 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 74/280 (26%), Positives = 117/280 (41%), Gaps = 12/280 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ + ++ D ++LI A DA++ Sbjct: 1 MKFTKMEGLGNDYVYVNAFTEKVENPGELARRIADRHFGVGGDGLILIEPSDKA--DAYM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVDM 120 + N DGSE CGNG+RCV +++ R+ ET GI + M Sbjct: 59 HMFNADGSEGSMCGNGIRCVAKYIYDHGIVDKERRQLRIETKSGIKDIEIFVKD---GKM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + +D + L + R + + NP V + + DL Sbjct: 116 EKATVDMGEVKLDGELPENIEVRGMSLQFVGIDVGNPHAVYFLEDNP-ELSVSSVSELDL 174 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G +HP F + VN +V S + R +ERG G T ACG+ A A+VVA + Sbjct: 175 EKIGKDFEEHPRFPDKVNAEFIQVLSPSEIRFRVYERGSGETLACGTGATAAVVAGILMG 234 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + +V +LGG L I + H FMTG A++ + G+ Sbjct: 235 RLEDKATVHLLGGDLEISYDKKTGHAFMTGPAREVFNGEW 274 >gi|296108918|ref|YP_003615867.1| diaminopimelate epimerase [Methanocaldococcus infernus ME] gi|295433732|gb|ADG12903.1| diaminopimelate epimerase [Methanocaldococcus infernus ME] Length = 282 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 12/278 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M +GN +VI+ + + D ++ I + D RI N Sbjct: 1 MHALGNDYIVINEFDGEKVKNKEEFSKKVCRRRFSIGADGVIFIQKPSSNNYDVKFRIFN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS----ISVDMGEP 123 DGSE + CGNG+RC +++ R+ K+ ET G+ V + + I V MG+P Sbjct: 61 SDGSEAEMCGNGIRCFSKYVYERILKKNPLKVETKAGLRVCELEVEDDRVKKIRVYMGKP 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH--YDLA 181 K IP+ ++ +R + +L N VS+GNPHAI FV+ DL L Sbjct: 121 SFKCKDIPVKSEKEEFINERAELKNP-YLKEVNITAVSVGNPHAIIFVD-DLEKIREHLD 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + P+F E +N+ +V + + + + TWERGVG T ACG+ A AS V S L Sbjct: 179 VIGSEIENLPIFPERINVHFVKVLNDKEIKILTWERGVGYTMACGTGATASAVVSNRLGF 238 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T V V + GG L IE D+ +M G+A ++G + Sbjct: 239 TKDKVLVHLDGGDLEIEIKDDG-AYMKGDAVMVYDGVM 275 >gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088] gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088] Length = 290 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 20/292 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTD-DNTHFDQIMLIHDFQ 56 M + + F KM +GN ++ID + + + D ++ + + Sbjct: 1 MNTKTILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKICDRNFGVGGDGVIFV--SK 58 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVA----KE 110 ++D RI N DGSE + CGNG+RC +++ + +K ET+ G + K Sbjct: 59 SDNLDIKFRIFNADGSEAEMCGNGIRCFAKYVYEKGILRKKRMKVETLAGEKILNLKTKN 118 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 N SI VDMG + IP+ + V++GNPH + F Sbjct: 119 NLVESIKVDMGLATFKSEKIPVKTKDKTFINKVCKLNDKKIKL----SAVNVGNPHTVIF 174 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V+ ++ G ++ HP+F E N++ +V + + + TWERGVG+T ACG+ A Sbjct: 175 VD-EVSRDYAEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTGAV 233 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 AS + L K N+ V+V + GG L IE ++ N+ FM G+A +EG L Sbjct: 234 ASTIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEGIL 285 >gi|325918376|ref|ZP_08180507.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937] gi|325535399|gb|EGD07264.1| diaminopimelate epimerase [Xanthomonas vesicatoria ATCC 35937] Length = 283 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 120/283 (42%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + A DQI+ I + Sbjct: 6 RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAVLAARLADRHFGVGCDQILTIEAPRSEDA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F ++ + + SV Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAHGERFIIDSPVTAHAVERVDAETYSV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPAQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVLEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F VN+ A+V + LR +ERGVG T ACGS ACA+ Sbjct: 181 PVERVGALLQQNAAFPNSVNVGFAQVVDSTHVRLRVFERGVGETLACGSGACAAAAVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDAQEVVMSGPAVFVFDGEWN 283 >gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271] gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271] Length = 282 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 138/286 (48%), Gaps = 18/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS------DAINALSTDDNTHFDQIMLIHDFQDAS 59 +DF KM G+GN + +D + L L+ Sbjct: 1 MDFIKMHGLGNDFVCLDRFLDPAENNPAETDYSELAQRLCHRQLGIG-GDGLLLILPSEK 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS-- 115 DA +RI N DGSE + CGNG+RC R++ + ++ T ET+ GI + Sbjct: 60 ADARMRIFNADGSEPEMCGNGIRCFARYIYEQGYVQKDQLTVETLAGIKPIRLQMKDGRV 119 Query: 116 --ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++VDMG+P L K IP+ D++ R + VS+GNPH + F++ Sbjct: 120 YGVTVDMGKPRLSAKEIPVNDHSDRVVNKRLEVLGKEIGI----TAVSVGNPHCVLFLD- 174 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D D+ + G L KHP F N+ RV S E + ++ WERGVG T ACG+ ACASV Sbjct: 175 DFAETDVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACGTGACASV 234 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VA+ +T R ++V + GG L IE+ + + MTG A+ + G+L Sbjct: 235 VAAVLNGRTGRRLTVHLPGGDLQIEYAEEGRILMTGPAQYVFRGQL 280 >gi|319406388|emb|CBI80029.1| Diaminopimelate epimerase [Bartonella sp. AR 15-3] Length = 284 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 132/290 (45%), Positives = 174/290 (60%), Gaps = 8/290 (2%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M++ F+KM G+GNKI+V DMR NIT AI L+ + THFDQIM IH + + Sbjct: 1 MET---PFSKMNGLGNKIIVADMRESTHNITLQAILTLAKNPQTHFDQIMTIHPSTKSEI 57 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D I I N DGS+ ++CGNG RCVV +LT+ +SF ET GI+ K +G ISV+M Sbjct: 58 DFRIEIWNADGSKAKACGNGTRCVVEWLTNHNLGESFQLETPVGIVKGKRQTNGLISVNM 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P D K +P+A + GP L++ ++S+GN HAIFFVE+++ H L Sbjct: 118 GCPNFDAKNMPIAHEIADTNHVEITAGP-----LKDASLISIGNLHAIFFVENNIQHIPL 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +G L P+F E N+SIA VTS SL LRTWERGVGLT ACGSAACAS VA+ Sbjct: 173 EKYGPKLEHDPLFPERCNISIAFVTSRNSLILRTWERGVGLTKACGSAACASAVAAYRRG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 T R + + GG L I + +NNH+ MTG + E+ G L+ TG + K Sbjct: 233 LTERRIDINSPGGNLSIFYQENNHIIMTGPVEHEFSGLLNPLTGDYKKDA 282 >gi|303244555|ref|ZP_07330889.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1] gi|302485103|gb|EFL48033.1| diaminopimelate epimerase [Methanothermococcus okinawensis IH1] Length = 302 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM G+GN +VI D + + + + D ++ + + D Sbjct: 8 LEFTKMHGLGNDYIVINEFDGIKIKEEDKEEFSRKICKRGFSIGADGVIYVQKPTNDKYD 67 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI---- 116 RI N DGSE + CGNG+RC +++ R+ K+ ET G+ V++ + + I Sbjct: 68 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERILKKNPLNVETKGGLRVSEMDIENDIVKKI 127 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRD---RFHIGPVNHLFLRNPFVVSMGNPHAIFFVE- 172 V MG P K IP+ + + + + VV++GNPHA+ FVE Sbjct: 128 KVYMGAPTFQLKDIPMKVEGKSENDEFLNEAIKLNNDLIDEIKLSVVNVGNPHAVIFVED 187 Query: 173 ----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D +L + G + H +F E +N+ V + + + TWERG G T ACG+ Sbjct: 188 NNITMDFARDNLNTLGKEIENHEVFPERINVHFIEVINPNEIKILTWERGAGYTTACGTG 247 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +SV+ + L KT V + GG L IE ++ V+M G+A ++GKL Sbjct: 248 TTSSVIIAHKLGKTGNKVLAHLDGGDLEIEIKEDG-VYMKGDAVIVYDGKL 297 >gi|68171560|ref|ZP_00544937.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa] gi|67999026|gb|EAM85700.1| Diaminopimelate epimerase [Ehrlichia chaffeensis str. Sapulpa] Length = 267 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 12/274 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+DF KM G N ++ID R NI AI + DQI++I + + A D F Sbjct: 1 MIDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA--NRKTGIGCDQIIIITESEKA--DCF 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS+V+ CGN RCV L++ + + T E IL + + V++G Sbjct: 57 MHIYNADGSKVEMCGNAARCVGYLLSNEKQDNNITIELSDRILSCLRTSENRVQVNIGVA 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IP ++ D + P+ L +P +++GNPHAIFFV+ + L Sbjct: 117 KFHWTDIPTSQECDTL------HLPIELEMLSDPVGINVGNPHAIFFVD-SIETIPLDKL 169 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L H +F + N+SIA + S + + LR WERG G TA+CGS ACA++VA+ TN Sbjct: 170 GPKLENHHLFPKRANISIAEIVSRDKIKLRVWERGTGETASCGSGACAALVAAIRRQYTN 229 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V + GG LLI + +N + M G + G Sbjct: 230 KTAVVCLQGGDLLISYQHDNTILMEGMVSYTFNG 263 >gi|285019337|ref|YP_003377048.1| diaminopimelate epimerase [Xanthomonas albilineans GPE PC73] gi|283474555|emb|CBA17056.1| probable diaminopimelate epimerase protein [Xanthomonas albilineans] Length = 286 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 130/282 (46%), Gaps = 9/282 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KM+G GN +V+D+R + A+ DQI+ I ++A+ Sbjct: 8 RGARLRFTKMQGAGNDFVVLDLRDGSSPPDAALAVRLADRHFGIGCDQILTIEPARNAAA 67 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISV 118 A RI N DGS CGNG RCV +L F E+ G + D +V Sbjct: 68 LASYRIWNTDGSAAGQCGNGARCVAAWLVRDGSASGDRFVIESPAGAHRIERCDDDQFAV 127 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + +PL D +D + + F VSMGNPHA+ V + Sbjct: 128 AMGVPRFAPEDVPLIGFPDALDEYLLPMHGESVRFG----AVSMGNPHAVLEVGL-VDAA 182 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL +H F + VN+ +V + L LR +ERGVG T ACGS ACA+ Sbjct: 183 PVERLGPLLQQHASFPDSVNVGFVQVIDRDRLRLRVYERGVGETLACGSGACAAAAVLMQ 242 Query: 239 LHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 + +R V V + GG L ++W H + M+G A ++G+ Sbjct: 243 RGRVDRDVRVVLPGGELRVQWPHAAAPLVMSGPAAFVFDGEW 284 >gi|49474820|ref|YP_032862.1| diaminopimelate epimerase [Bartonella quintana str. Toulouse] gi|81646717|sp|Q6FYC7|DAPF_BARQU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49240324|emb|CAF26806.1| Diaminopimelate epimerase [Bartonella quintana str. Toulouse] Length = 283 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 130/284 (45%), Positives = 170/284 (59%), Gaps = 5/284 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM+G+GN+I+V DMR +T AI AL+ D THFDQIM IH D I I Sbjct: 4 PFRKMDGLGNQIIVADMRESTHALTPQAILALAADPQTHFDQIMTIHSSTQKEADFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCV+ +LT +SF ET GI+ K D ISVDMG P + Sbjct: 64 WNADGSMAKACGNGTRCVIAWLTDHNLGESFRLETPAGIIEGKRQTDNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + + GP L++ +VS+GN HAIFFVED++ L +G Sbjct: 124 AKEMPVSREIADTNYVKITAGP-----LKDACLVSIGNLHAIFFVEDNIQQIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA VTS +SL+LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 179 LEHDPLFPERCNISIASVTSHKSLNLRTWERGAGLTKACGSAACASAVAAYRRGLTQRHI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V + GG L I + ++NH+ MTG K E+ G L+ TG + K + Sbjct: 239 DVNLPGGTLNIVYREDNHIVMTGPTKYEFGGFLNPLTGTYKKDH 282 >gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579] gi|81580413|sp|Q816D1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579] Length = 288 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGESETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|167045713|gb|ABZ10360.1| putative diaminopimelate epimerase [uncultured marine bacterium HF4000_APKG2098] Length = 275 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 93/273 (34%), Positives = 155/273 (56%), Gaps = 4/273 (1%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM+G+GN ++ D R ++T + I +S ++ DQ++ I +D + +AF++ N Sbjct: 7 YKMDGLGNDFIIFDKRKKSVSLTKEQIIKISDRNSIGCDQVIFIE--KDENSNAFLKFYN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG E+ +CGNG RCV L K + T GIL A+ N +S++MGEP +W Sbjct: 65 SDGGEISACGNGSRCVAYLLMKENNNKKISLGTKVGILQAELNDKNLVSINMGEPNFEWN 124 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL++ D + + I ++ R F +S+GNPH IFFVE D ++L G + Sbjct: 125 KIPLSKKMDTQNL-KIKINGIDGKEARGGFSLSIGNPHVIFFVE-DFNQFNLKEIGPKIE 182 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 + F E N+++A + + + ++ WERGVGLT ACG+AACA+ V+ L + R V + Sbjct: 183 NYSYFPEKCNVTLASIKNKNHVKVKVWERGVGLTKACGTAACATAVSGAVLKLSERCVDI 242 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + G L I+W +N+++MTG+ + + ++I Sbjct: 243 EFVEGLLNIDWKKDNNIYMTGKVSEVKKITVNI 275 >gi|49476309|ref|YP_034350.1| diaminopimelate epimerase [Bartonella henselae str. Houston-1] gi|81647473|sp|Q6G1L7|DAPF_BARHE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49239117|emb|CAF28421.1| Diaminopimelate epimerase [Bartonella henselae str. Houston-1] Length = 283 Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 126/284 (44%), Positives = 169/284 (59%), Gaps = 5/284 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+G+GN+I+V DMR +T AI +L+ D T+FDQIM IH D I I Sbjct: 4 PFSKMDGLGNQIIVADMRESTHALTPQAILSLAADSQTYFDQIMAIHLPTKKEADFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS +CGNG RCV+ +LT + F ET GI+ K D ISVDMG P + Sbjct: 64 WNADGSMANACGNGTRCVIAWLTDHNYGEIFRLETPAGIVEGKRQIDNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP LR+ +VS+GN HAIFFVE+D+ + L +G+ Sbjct: 124 AKEMPVSREIIDTNHVELTAGP-----LRDACLVSIGNLHAIFFVENDIQYIPLEKYGSK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F + N+SIA VTS ESL+LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 179 LEHDPLFPQRCNISIACVTSQESLNLRTWERGAGLTQACGSAACASAVAAYRRGLTKRNI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V + GG L I + +++H+ MTG K + G L+ TG + K + Sbjct: 239 DVNLPGGTLNIFYREDDHIIMTGPVKYGFSGFLNPLTGSYKKDD 282 >gi|261250030|ref|ZP_05942607.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891] gi|260939534|gb|EEX95519.1| diaminopimelate epimerase [Vibrio orientalis CIP 102891] Length = 261 Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats. Identities = 86/265 (32%), Positives = 126/265 (47%), Gaps = 10/265 (3%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +V+D + + D I L+ FDQ++++ D D RI N DGSEV+ C Sbjct: 1 MVVDCITQNIFFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQC 60 Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 GNG RC RF+ + + S + T +G +V D ++V+MG P + IP Sbjct: 61 GNGARCFARFVRMKGLTNKYSVSVSTKKGKMVLSIEEDDQVTVNMGVPEFEPSKIPFKAK 120 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 ++ +I L VSMGNPH V DD+ D+ + G LL H F E Sbjct: 121 ----QTEKTYILRTEDKTLFCG-AVSMGNPHV-VTVVDDVATADVDTLGPLLESHERFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 VN +V + ++LR +ERG G T ACGS AC +V + V V + GG L Sbjct: 175 RVNAGFMQVLNRNEVNLRVYERGAGETQACGSGACGAVAVGIVQGLLDENVKVNLPGGSL 234 Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKL 279 I+W ++MTG A ++G+L Sbjct: 235 NIQWQGVGKPLYMTGPATHVFDGQL 259 >gi|57234492|ref|YP_181475.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195] gi|57224940|gb|AAW39997.1| diaminopimelate epimerase [Dehalococcoides ethenogenes 195] Length = 284 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 8/280 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN ++ID +G + + A++ D +MLI A D +R Sbjct: 1 MKFTKLQSVGNDFVLIDPQGEDKDWSKLALHMCHRHFGAGADGLMLILPS--AKADFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + R + ET+ GI A+ DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D + I +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLSLVSMGNPHAIHFCTKSVEEFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G L+ H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V +K+ GG L +EW +N V++TG+A+ + G+ Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHNDVYLTGKAEIIYTGEW 278 >gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264] gi|226724204|sp|B7HBI0|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264] Length = 288 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|257438842|ref|ZP_05614597.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165] gi|257198657|gb|EEU96941.1| diaminopimelate epimerase [Faecalibacterium prausnitzii A2-165] Length = 279 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 9/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G N + +D R +I + A + + D I+ I D Sbjct: 3 LSFTKMQGCANDYIYLDCRASGVPADIAALAQRLSARHFSVGADGIICICAPVTPGADGR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE Q CGNG+RCV +L + K +T G+ V+MG Sbjct: 63 MRIFNADGSEAQMCGNGVRCVAEWLYTHGVEKPVLAIDTNSGVKRITRQGAQLWQVEMGT 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +P + + + +S+GNPH + VE D+ L + Sbjct: 123 YSTLPADLP---AIHMGEDPLVDQPLTVEGKVWKVTCISVGNPHCVTVVE-DVDSLKLEA 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 179 IGPAFEHHANFPERINTEFVQVVDAAHLKMRVWERGSGETWACGTGTCATVAALTELGIC 238 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V++ GG L+I + MTG A +EG ++ Sbjct: 239 PAGQDIHVQLRGGELVIRVLPGRQLLMTGSAVTVYEGVAEV 279 >gi|70729907|ref|YP_259646.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] gi|68344206|gb|AAY91812.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf-5] Length = 264 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 14/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+ ++ID RG + IT + AL F+Q++++ D D++ A + Sbjct: 3 LNFVKMHANGDDFVLIDARGRTNPITRELARALGDRRRGIGFNQLVVLGDCSDSA--AQL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + +CG+ R L S +T RG+ D S+SV+MG P Sbjct: 61 TFFNADGSSLDTCGSATRGAADLLMQESGVTSVQVKTARGLQQCLRLEDRSVSVEMGLPS 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 DW+ IPLAR D + P SMGNPH FFV+ DL D+A+ G Sbjct: 121 FDWQSIPLARELDSLHL----------PLPGTPAACSMGNPHCSFFVD-DLAPLDIATLG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + P+F N+ +V +++ LR WER + GS +CA+ V + Sbjct: 170 PQIESDPLFPHKTNVHFIQVIDRQTIRLRIWERNGAIPLGSGSCSCAAAVNGIRRGLLDS 229 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V GG + + W V + G + + G L Sbjct: 230 PVQVLCDGGPVTVSWDGQGKVRLAGSVTRVFSGSL 264 >gi|254462864|ref|ZP_05076280.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2083] gi|206679453|gb|EDZ43940.1| diaminopimelate epimerase [Rhodobacteraceae bacterium HTCC2083] Length = 273 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 139/277 (50%), Gaps = 15/277 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +V D R +T + A++ +DQ++ I + A D Sbjct: 7 NKLPFMKMHGLGNDFVVFDERESGSVVTQALVIAMADRHMGVGYDQLVAIRNHDTA--DI 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS +CGN RC+ + +R ++ + T RG+L A + G I V+MG+ Sbjct: 65 ELVFWNADGSIAGACGNATRCIAGWDLARTGKEVLSIRTERGLLEAVDAGHGDIEVNMGQ 124 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW +PLAR D ++ P SMGNPH FFV +D+ +L + Sbjct: 125 PMTDWHEVPLAREMDTLEL----------PIEGKPTATSMGNPHCTFFV-NDVDAINLEA 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG + HP+F E N+ IA++ + +R WERGVG+T A GS++CA VA+ Sbjct: 174 FGPTIEHHPLFPERTNVQIAQIIGPNQIRMRVWERGVGITLASGSSSCAVAVAATRRGLI 233 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ + GG + I+ V MTG ++G Sbjct: 234 GGSATLTLDGGEIRIKILPTG-VHMTGTWAHVFDGHW 269 >gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134] gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus] gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134] Length = 288 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28] gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28] Length = 288 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 144/285 (50%), Gaps = 19/285 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAI 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K + ++V + GG L+I W + +V M G A+ G + Sbjct: 239 LNGKLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|296186652|ref|ZP_06855054.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296048689|gb|EFG88121.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 273 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN +VID R A D I+L+ + A + Sbjct: 1 MKFTKMQGTGNDFIVIDDRKNSFLGKEGELAKKLCDRKFAIGADGILLVRNSDVAQI--K 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL------VAKENRDGSIS 117 + I+N DGS CGNG+RC +++ K + G + + ++ Sbjct: 59 MIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLENHSIKEVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MG P + + IP + + + + N + MG PH I F + L Sbjct: 119 INMGTPSFEVEKIPA-----RFNEEVINKRIKVEKKEYNITSMLMGVPHTIIFGK--LED 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 Y++ G + K F +G N++ V S + ++TWERG G T ACG+ +CASV+A+ Sbjct: 172 YNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGSCASVIAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T+ +V V++ GG L IE N +FMTG A ++G+ ++ Sbjct: 231 KLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 273 >gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] Length = 286 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ G+GN + ++ ++ A + D ++LI + A D Sbjct: 1 MKFTKLHGLGNDYVYVNCFEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSERA--DF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGS 115 +R+ N DGSE ++CGNG+RCV +++ + TF + R Sbjct: 59 RMRVFNNDGSEAKNCGNGLRCVSKYVYDHGLTEQTTFTVETLGGTVTPVVSLGADGRVDQ 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +++DMGEP + IP+ ++ R+ G VSMGNPHAI FV+ ++ Sbjct: 119 VTIDMGEPRFERAAIPMTGIPEEQVREE---GIEVGGTAFTMTAVSMGNPHAILFVD-EV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ +G ++ H F E N+ ++ + E + R WERG G+T ACG+ ACA+ VA Sbjct: 175 KEEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACAAAVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 + KT R V+V + GG L IEW + +N V+MTG A + + G+ Sbjct: 235 AHLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGE 278 >gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335] gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335] Length = 271 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 87/271 (32%), Positives = 126/271 (46%), Gaps = 13/271 (4%) Query: 22 DMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 D R + A++ + D ++ + ++ D +RI N DGSE + CGN Sbjct: 2 DNRASETPMVTPEQAVDVCDRNFGIGADGVIFVLPGKE-GADYSMRIYNSDGSEPEMCGN 60 Query: 80 GMRCVVRF-------LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 G+RC+ +F KS+ T+ GI+ + DG ++VDMGEPIL + IP Sbjct: 61 GIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPDGQVTVDMGEPILTAREIPT 120 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + D VSMGNPH I FV+ D+ LA G H Sbjct: 121 TLG--QPDGKVIDETLTVAGENWQVTCVSMGNPHCITFVD-DVEAVPLADIGPRFEHHEA 177 Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG 252 F +N V + L ++ WERG G T ACG+ CA VVA+ K +R +V++ G Sbjct: 178 FPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCALVVAAVLNGKCDRQTTVELPG 237 Query: 253 GGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 G L IEW +NN V+MTG A + G + + Sbjct: 238 GNLEIEWANNNRVYMTGPATLVFSGDVAVDA 268 >gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189082825|sp|A7GUE1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98] Length = 288 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 140/284 (49%), Gaps = 17/284 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M H A+ + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETIFTIETLAGIVTAEVTVENDIVTLVKI 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P L +P+ + + H VSMGNPHA+ FV+ D+ Sbjct: 124 DMGAPRLTRAELPMLGEGETPF---IREDFLFHNQRYAFTAVSMGNPHAVIFVD-DVEKA 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACASVVA+ Sbjct: 180 PLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACASVVAAIL 239 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + V M G A+ G + Sbjct: 240 NGKMERGKEITVHLAGGDLMITWTEEGTVMMKGPAEVICHGVYE 283 >gi|229112384|ref|ZP_04241922.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15] gi|228671032|gb|EEL26338.1| Diaminopimelate epimerase [Bacillus cereus Rock1-15] Length = 288 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 142/285 (49%), Gaps = 19/285 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M A+ + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SV 118 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ V+ D+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 239 LNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|229099396|ref|ZP_04230326.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29] gi|228684020|gb|EEL37968.1| Diaminopimelate epimerase [Bacillus cereus Rock3-29] Length = 288 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 141/285 (49%), Gaps = 19/285 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSI----SV 118 R+ N DGSE ++CGNG+RCV ++ + F ET+ GI+ A+ + + + Sbjct: 64 RMFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKI 123 Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 124 DMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAI 238 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 239 LNGKLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|225378461|ref|ZP_03755682.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM 16841] gi|225209684|gb|EEG92038.1| hypothetical protein ROSEINA2194_04129 [Roseburia inulinivorans DSM 16841] Length = 283 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 125/284 (44%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + ID + +S D ++LI D + Sbjct: 1 MKFTKMQAFGNDYVYIDAIHQELKNLPELARFVSDRHFAIGSDGMVLICPSDKG--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 R+ N DG+E + CGN +R V +++ + ET+ G+ +I Sbjct: 59 RMFNPDGTEGEMCGNALRSVGKYVYDHRLTDKTELVIETLGGMQHLTLTVTDGYVSNIRA 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 D+GEP L K+IP+ D + VS GNPH FV+ + Sbjct: 119 DIGEPRLSTKVIPINTEMDTFVDQPVQVLDRTFHI----TAVSWGNPHCAMFVD-SVAEL 173 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ +G + +F N++ S + L +R WERG G T CG+ +VV + Sbjct: 174 DVEKYGKEIEYMTSIFPNKTNVTFTEFVSRDYLKIREWERGTGETIGCGTGCATAVVTAI 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 K +R V+V+ +GG LLIEW + NH+FMTG + +E ++D Sbjct: 234 LTGKCDRKVTVEQIGGPLLIEWDEKTNHLFMTGPSHTVFEAEID 277 >gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048] gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196] gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621] gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621] gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196] gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048] Length = 288 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 144/285 (50%), Gaps = 19/285 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M AI + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ + + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L + IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 124 DMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAI 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K + ++V + GG L+I W + +V M G A+ G + Sbjct: 239 LNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYE 283 >gi|300854262|ref|YP_003779246.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528] gi|300434377|gb|ADK14144.1| diaminopimelate epimerase [Clostridium ljungdahlii DSM 13528] Length = 273 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 135/284 (47%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN +VID R + + D I+++ + A + Sbjct: 1 MKFIKMQGTGNDFVVIDDRDNRFLGKEKELGLKLCNRHFGIGGDGILIVRQSEIAQI--K 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SIS 117 + IIN DGS CGNG+RC +++ K ET GI A N + ++ Sbjct: 59 MIIINSDGSYASMCGNGIRCFAKYVWEENLVKESPIKIETGDGIKEAFLNIENGKVKEVT 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG P D K IP+ + + ++ + + + MG PH + F DL Sbjct: 119 IDMGTPSFDPKKIPVNSCDEVVKKELKI-----NEKTYSITSMFMGVPHTVIFG--DLEK 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G + K+ +F EG N++ V + + + ++TWERG G T ACG+ CA VAS Sbjct: 172 YDVKE-GKAIEKYSIFPEGTNVNFCEVLNKDEIKIKTWERGAGPTLACGTGTCACAVASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T V + GG L IE +N VFMTG A+ ++G+ DI Sbjct: 231 KLGFTEGKVKAHVPGGILFIEVK-DNKVFMTGPAEVSFKGEYDI 273 >gi|217978010|ref|YP_002362157.1| Diaminopimelate epimerase [Methylocella silvestris BL2] gi|254767115|sp|B8EM14|DAPF_METSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|217503386|gb|ACK50795.1| Diaminopimelate epimerase [Methylocella silvestris BL2] Length = 290 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 117/273 (42%), Positives = 158/273 (57%), Gaps = 2/273 (0%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 KM GIGN+IL++D+RG +T A++ FDQ+M++ D + AF+ I N Sbjct: 10 VKMNGIGNEILIVDLRGAGAGVTGPQARAIARTKGLAFDQLMVLEDPRSKGCAAFVTIFN 69 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS+ +CGNG RCV L R ET G L + + SV+MG P L Sbjct: 70 ADGSQSAACGNGTRCVAWTLLKDGARDEVLLETAAGRLACRRVSELVFSVEMGRPRLKAA 129 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL+R GP + L+NP VV+MGNPHAIFFVE D+ YDLA+ G +L Sbjct: 130 EIPLSRDAPDTSAVDLSFGPADSPILKNPAVVNMGNPHAIFFVE-DIGAYDLAAIGPVLE 188 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 P+F E N+S+AR+ S E ++L+ WERGVGLT ACGSAACA++VA+ T R +V Sbjct: 189 HDPLFPERANISLARIVSPERIELKVWERGVGLTLACGSAACAALVAAARRGLTGRRATV 248 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + GG L I W + ++ V MTG E+E +LD Sbjct: 249 ALPGGELDIFWRESDDMVVMTGPVAFEFETRLD 281 >gi|240851392|ref|YP_002972795.1| diaminopimelate epimerase [Bartonella grahamii as4aup] gi|240268515|gb|ACS52103.1| diaminopimelate epimerase [Bartonella grahamii as4aup] Length = 283 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 127/285 (44%), Positives = 167/285 (58%), Gaps = 5/285 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+G+GN+I+VIDMR +T AI ALS D HFDQIM IH D I I Sbjct: 4 PFSKMDGLGNQIIVIDMRESTHALTPQAILALSADPEIHFDQIMAIHTPTQKKADFRIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCVV +L + F ET GI+ D ISVDMG P + Sbjct: 64 WNADGSMAKACGNGTRCVVAWLKDHNFGEKFRLETPAGIIEGTYQTDNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ ++S+GN HAIFFVE+D+ H L +G Sbjct: 124 AKEMPVSREIVDTNHVEITAGP-----LKDACLISIGNLHAIFFVENDIQHIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA +TS +SL+LRTWERGVGLT ACGSAACAS VA+ T R + Sbjct: 179 LEHDPLFPEQCNISIACITSKKSLNLRTWERGVGLTQACGSAACASAVAAYRRGLTQRHI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + G L I + +++HV MTG K ++ G L TG + K + Sbjct: 239 DVNLPKGTLNIFYREDDHVIMTGPIKYQFSGFLSPLTGCYKKDHS 283 >gi|73748553|ref|YP_307792.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1] gi|289432581|ref|YP_003462454.1| diaminopimelate epimerase [Dehalococcoides sp. GT] gi|73660269|emb|CAI82876.1| diaminopimelate epimerase [Dehalococcoides sp. CBDB1] gi|288946301|gb|ADC73998.1| diaminopimelate epimerase [Dehalococcoides sp. GT] Length = 284 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 140/280 (50%), Gaps = 8/280 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +MLI + A D +R Sbjct: 1 MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ R + ET+ G+ A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAVNKLLGNRDELSIETLAGMRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D + I +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G+ + H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V +K+ GG L +EW ++ V++TG+A+ + G+ Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIYTGEW 278 >gi|163942650|ref|YP_001647534.1| diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4] gi|229807486|sp|A9VN01|DAPF_BACWK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|163864847|gb|ABY45906.1| Diaminopimelate epimerase [Bacillus weihenstephanensis KBAB4] Length = 288 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 145/285 (50%), Gaps = 19/285 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M AI + + D ++LI A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISV 118 R+ N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ + + Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKI 123 Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG P L + IP+ + R+ F + F VSMGNPHA+ FV+ D+ + Sbjct: 124 DMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEN 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 179 APLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAI 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K + ++V + GG L+I W + +V M G A+ G + Sbjct: 239 LNGKMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYE 283 >gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108] gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108] Length = 281 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 88/286 (30%), Positives = 131/286 (45%), Gaps = 13/286 (4%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN + +D ST D ++LI A D Sbjct: 2 TRSIKFTKMHGAGNDYIYVDTTQYPVENPERLSKTWSTPHTGIGSDGLVLIGKSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE CGN RC+ F K+ T +T+ GI + K + V+ Sbjct: 60 FSMRIFNADGSEAMMCGNASRCIGKYLFDYGLTKKTEITLDTLSGIKILKLHVAADGKVN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV---VSMGNPHAIFFVEDDLY 176 + IP + + L +V VSMGNPH + FV +D+ Sbjct: 120 TVTVDMG---IPADEPVNYDGNGAKPMKEQPILIEGKRYVGTTVSMGNPHIVIFV-NDIT 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DLA+ G + HP+F +N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 176 DTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACATAVAA 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 + R + M GG + I+W + HV MTG A K +EG++++ Sbjct: 236 FLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEIEV 281 >gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis CT-43] Length = 288 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FVE D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|319780720|ref|YP_004140196.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166608|gb|ADV10146.1| diaminopimelate epimerase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 294 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 149/289 (51%), Positives = 195/289 (67%), Gaps = 1/289 (0%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 FAKM GIGN+I+V DMRG D +T+ A AL+ D T FDQIM IHD + + FI I Sbjct: 6 PFAKMNGIGNEIIVADMRGRADRVTAAAAVALNADAATSFDQIMAIHDARTSGTAFFIDI 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 +N DG+ Q+CGNGMRCVV+ L + +K FTFET+ GIL A+E+ DGSISVDMG P Sbjct: 66 LNSDGTGAQACGNGMRCVVQALAAETGQKIFTFETVAGILNAREHADGSISVDMGTPRFG 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L +P VVSMGNPHAIF+V++D++ Y+L FG L Sbjct: 126 WQDIPLAEEFRDTRMIELQIGPIDAPVLHSPSVVSMGNPHAIFWVDNDVWSYELDRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HPMF E N++IA+VTS E++ +RTWERG GLT ACGSA+CA+VVA+ ++T R+V Sbjct: 186 LENHPMFPERANITIAQVTSPETMIIRTWERGAGLTKACGSASCAAVVAAARTNRTGRSV 245 Query: 247 SVKML-GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 S+ GG L +EW D++HV +TG A+ E+ G D G W + E Sbjct: 246 SLLTPGGGTLHVEWRDDDHVVLTGAAEWEFSGNFDPSIGTWARDTESAA 294 >gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273] gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272] gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272] gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273] Length = 288 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 95/287 (33%), Positives = 147/287 (51%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDM-----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M R + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIREEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEDDKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L + IP+ D R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTREEIPMLGEGDTPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 283 >gi|147669314|ref|YP_001214132.1| diaminopimelate epimerase [Dehalococcoides sp. BAV1] gi|146270262|gb|ABQ17254.1| Diaminopimelate epimerase [Dehalococcoides sp. BAV1] Length = 284 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 8/280 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +MLI + A D +R Sbjct: 1 MKFTKLQSVGNDFVLLDPQGEEQDWPKLALHMCHRHFGAGADGLMLILPSEKA--DFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + ET+ G+ A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIAVNKLLGNLDELSIETLAGMRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D + I +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYNGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFP 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G+ + H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGSQVEIHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V +K+ GG L +EW ++ V++TG+A+ + G+ Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIYTGEW 278 >gi|90416169|ref|ZP_01224101.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207] gi|90331894|gb|EAS47108.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2207] Length = 274 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 93/280 (33%), Positives = 137/280 (48%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID + IT+ + L+ DQ+++I +D Sbjct: 1 MKFTKMHGLGNDFVVIDAVTQNVRITASMVRRLADRKTGIGCDQVLVIEPPSAVDIDFNY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI NCDG+EV+ CGNG RC+ RF+ R +KS +T ++ ++VDMG Sbjct: 61 RIFNCDGAEVEQCGNGARCLARFVHDRQLTGKKSIQVQTSNRVMTLNLINKNLVAVDMGV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P LD IP + D G ++ VSMGNPHA+ V D+ +A Sbjct: 121 PELDPPAIPFQATEAASLYDIDVNG-----QVQRIAAVSMGNPHAVLTV-ADINTATVAE 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L H F VN+ ++ + LR +ERGVG T ACGS ACA+ VA+ Sbjct: 175 LGAALESHERFPNRVNVGFMQIVDRSEIKLRVFERGVGETDACGSGACAAAVAAIQQELV 234 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + V+V + G L I+W + + M+G AK + G++ I Sbjct: 235 DSPVTVHLTRGPLKIDWKGSGSPLIMSGPAKTVFHGRIRI 274 >gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8] gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8] Length = 1351 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 138/289 (47%), Gaps = 14/289 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KM G GN + + + A+N D ++L+ + A Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGVGGDGVILVCRSKVA-- 1125 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD----G 114 D +R+ N DGSE + CGNG+RCV +F+ R T ET+ GI+ K +R Sbjct: 1126 DGRMRMFNLDGSEGRMCGNGIRCVAKFMRDNGLVDRDRMTIETLSGIIKVKLSRHYGEVN 1185 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +VDMG IL+ + IP D+ R VSMGNPH I F+ ++ Sbjct: 1186 GATVDMGAAILEPERIPCTLPADENGR-VVDREVEIAGEKHRVTCVSMGNPHCIVFM-NN 1243 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + ++ G P+F E VN +V +L +R WERG G T ACG+ ACA+VV Sbjct: 1244 IDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACAAVV 1303 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ N V+V + GG L I + ++ V+MTGEA +EG + + Sbjct: 1304 AAVLNGYCPMNEEVTVMLRGGNLTIRYTED-TVYMTGEAVTVFEGDIRV 1351 >gi|325925413|ref|ZP_08186812.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325928772|ref|ZP_08189941.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325540853|gb|EGD12426.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] gi|325544173|gb|EGD15557.1| diaminopimelate epimerase [Xanthomonas perforans 91-118] Length = 284 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 120/283 (42%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSQGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F + + +V Sbjct: 66 VAAYGIWNSDGSPARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPAQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283 >gi|115522349|ref|YP_779260.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53] gi|122297964|sp|Q07UV4|DAPF_RHOP5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|115516296|gb|ABJ04280.1| diaminopimelate epimerase [Rhodopseudomonas palustris BisA53] Length = 288 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 118/275 (42%), Positives = 160/275 (58%), Gaps = 5/275 (1%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 FAKM GIGN+I+V+D+R D + A A + +DQ+M++ + A AFIRI Sbjct: 9 FAKMNGIGNEIVVLDLRD--DPVAVTAAAARAIASQVPYDQLMVLQPPRAAGTAAFIRIY 66 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE-PILD 126 N DGSE +CGNGMRCV + + S + FE+ G+L I P Sbjct: 67 NNDGSESNACGNGMRCVAKQVFSGTDASALAFESRAGLLQCWRGAAPDIYTVDMGVPKFG 126 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 W+ IPLA F IGP++ L P VSMGNPHAIF+V+ D++ +DL FG L Sbjct: 127 WQDIPLAEEFRDTRMIELQIGPIDAPLLHTPSAVSMGNPHAIFWVD-DVHAHDLGRFGPL 185 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP+F E N+++A + + +RTWERGVGLT ACGSAACA+ VA+ L + R V Sbjct: 186 LENHPIFPERANITLAHIVDRTHIVIRTWERGVGLTKACGSAACATAVAAVRLKRAERQV 245 Query: 247 SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + + GG L I+W + ++HV MTG A E+EG LD Sbjct: 246 QISLPGGDLTIDWREADDHVLMTGGASFEFEGTLD 280 >gi|296446185|ref|ZP_06888133.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b] gi|296256379|gb|EFH03458.1| diaminopimelate epimerase [Methylosinus trichosporium OB3b] Length = 288 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 109/272 (40%), Positives = 153/272 (56%), Gaps = 3/272 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN+ILV+D+RG +T+ A++ FDQ+M +H+ + A +AF+RI N D Sbjct: 13 MNGAGNEILVLDLRGASHEVTAAEARAIARASGLRFDQLMTLHEPRAAGANAFMRIYNND 72 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS +CGNG RCV L + + + ET G + + + SVDMG P LDW+ I Sbjct: 73 GSRSGACGNGTRCVAFVLGEKGEGDALLLETDAGPIRSWRRGETLFSVDMGAPRLDWRAI 132 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PLA D R + P V+MGNPHA+FFVE D L + G + H Sbjct: 133 PLAGEG--ADTARVALAPAVIGAPEFFSAVNMGNPHAVFFVE-DPAAIALEALGPPIETH 189 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F E VN+S A V + + LR WERG G+T ACGSAACA++VA+ + R V++ Sbjct: 190 PLFPERVNVSFASVLAPGEIALRVWERGTGVTKACGSAACATLVAASRAGLSGREARVRL 249 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 GG L I+W ++HV MTG + E+ +LD + Sbjct: 250 PGGDLDIDWGADDHVMMTGPVELEFVTRLDPR 281 >gi|270157867|ref|ZP_06186524.1| diaminopimelate epimerase [Legionella longbeachae D-4968] gi|289163870|ref|YP_003454008.1| Diaminopimelate epimerase [Legionella longbeachae NSW150] gi|269989892|gb|EEZ96146.1| diaminopimelate epimerase [Legionella longbeachae D-4968] gi|288857043|emb|CBJ10858.1| Diaminopimelate epimerase [Legionella longbeachae NSW150] Length = 276 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 140/278 (50%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G+GN +VID + N++ I ++ + FDQ +L+ Q +D Sbjct: 3 LRFTKMHGLGNDFIVIDGINQNINLSPQQIAIMAQRNTGIGFDQCLLVESSQQEGIDFNY 62 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DG EV CGNG RC+ + T T + N D S+ VDMG Sbjct: 63 RIFNADGQEVGQCGNGARCLALFVKYYGLTNKSHLTVATKTTKMNLHINEDQSVRVDMGI 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P L + IPL + ++ D+ + ++L +S+GNPHA+ V +L+ + S Sbjct: 123 PKLAPRDIPL-LTQEQSDQYVLELSNNESIYLH---ALSVGNPHAVLLV-PELHRAPVLS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ HP F E VN+ ++ + + + LR +ERG G T ACGS A A+ +K Sbjct: 178 LGKKISLHPSFPEQVNVGFMQIVNSQHIKLRVFERGSGETQACGSGAVAAAAVGCLYYKM 237 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 ++ + V + GG LLI+W + N + +TG A +EG L Sbjct: 238 DKHIKVTLPGGDLLIDWPEFNKPICLTGPAIFVYEGTL 275 >gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803] gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803] Length = 288 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 146/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L + IP+ + R+ F + F VSMGNPHA+ FVE D+ Sbjct: 122 KIDMGAPRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|332286573|ref|YP_004418484.1| diaminopimelate epimerase [Pusillimonas sp. T7-7] gi|330430526|gb|AEC21860.1| diaminopimelate epimerase [Pusillimonas sp. T7-7] Length = 290 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 87/278 (31%), Positives = 131/278 (47%), Gaps = 8/278 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D +T + AL+ DQI+L+ D RI N Sbjct: 1 MHGAGNDFVVLDGVRQSIELTPERARALADRHFGIGADQILLVDAPLHPEADFRYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV+ CGNG RC VRF+ + +R E GI+ DG++SV+MG+ + Sbjct: 61 DGSEVEHCGNGARCFVRFVHEQGLSRRNPLRAEIKTGIITLDNTGDGNVSVEMGQTRFEP 120 Query: 128 KLIPLARSFDK---MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + + D P+ +V++ NPHA+ V+ D+ + + G Sbjct: 121 QALDFDAQDLQSAAYADDTLWTLPLPGHGDVQISLVAISNPHAVQLVD-DVQTAPVGTIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ HP F + VN +V ++ LR +ERG G T ACG+ ACA+ VA + Sbjct: 180 PLVESHPRFKQRVNAGFMQVLDRNTIKLRVYERGAGETLACGTGACAAAVAGIRRGLLDS 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V GG L I W +N + M+G A + G++DI Sbjct: 240 PVLVHTRGGPLTITWS-DNSLRMSGPAVTVFAGQVDID 276 >gi|150006986|ref|YP_001301729.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503] gi|166225741|sp|A6L8U3|DAPF_PARD8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149935410|gb|ABR42107.1| diaminopimelate epimerase [Parabacteroides distasonis ATCC 8503] Length = 269 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 127/280 (45%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + + I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMAYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGN RC+ +++ ++ T ET+ GI + + ++ Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + +A + + V+SMGNPH + FV+ ++ LAS Sbjct: 123 DMGMPAVGEMALEVEA------------GGEIYTGTVISMGNPHLVIFVD-EMDQVGLAS 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA KT Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L IEW + + VFMTG A +EG + + Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|56421492|ref|YP_148810.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426] gi|81557752|sp|Q5KVP4|DAPF_GEOKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|56381334|dbj|BAD77242.1| diaminopimelate epimerase [Geobacillus kaustophilus HTA426] Length = 290 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 101/292 (34%), Positives = 147/292 (50%), Gaps = 25/292 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDF 55 M+S F KM G+GN + +D+ + + + + A++ D ++LI Sbjct: 1 MRSF--SFTKMHGLGNSYIYVDLF--RETLPEEELPAIARSVADVHTGIGSDGLILICPS 56 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRD 113 + A V +RI N DGSE ++CGNG+RCV ++ TF ET+ G++ A+ Sbjct: 57 EKAPV--KMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVSDRTFLIETLSGLVEARVAVA 114 Query: 114 G----SISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 S++VDMGEP L+ IP L +++ + F I + VSMGNPH I Sbjct: 115 DGEVTSVTVDMGEPRLERSAIPMLGPEAERVVAEPFAIAGGEYEI----TAVSMGNPHVI 170 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 F+V+ D+ + + G L+ K P F EGVN+ V + L R WERG G+T ACG+ Sbjct: 171 FYVD-DIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTG 229 Query: 229 ACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ACA+VVAS KT V + GG L I W + V MTG A+ G Sbjct: 230 ACAAVVASVLNGKTARGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGV 281 >gi|78046245|ref|YP_362420.1| diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585937|sp|Q3BXU3|DAPF_XANC5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|78034675|emb|CAJ22320.1| Diaminopimelate epimerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 284 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 120/283 (42%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F + + +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPMSAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPAQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283 >gi|261420393|ref|YP_003254075.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61] gi|319768060|ref|YP_004133561.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52] gi|261376850|gb|ACX79593.1| diaminopimelate epimerase [Geobacillus sp. Y412MC61] gi|317112926|gb|ADU95418.1| diaminopimelate epimerase [Geobacillus sp. Y412MC52] Length = 290 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 147/292 (50%), Gaps = 25/292 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDF 55 M+S F KM G+GN + +D+ + + + + A++ D ++LI Sbjct: 1 MRSF--SFTKMHGLGNSYIYVDLF--RETLPEEELPAIARSVADVHTGIGSDGLILICPS 56 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRD 113 + A +RI N DGSE ++CGNG+RCV ++ + TF ET+ G++ A+ Sbjct: 57 EKAP--LKMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVA 114 Query: 114 G----SISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 S++VDMGEP L+ IP+ +++ + F I + VSMGNPH I Sbjct: 115 DGEVTSVTVDMGEPRLERSAIPMVGPKAERVVAEPFTIAGGEYEM----TAVSMGNPHVI 170 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 F+V+ D+ + + G L+ K P F EGVN+ V + L R WERG G+T ACG+ Sbjct: 171 FYVD-DIQKAPVTTLGPLVEKDPRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTG 229 Query: 229 ACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ACA+VVAS KT V + GG L I W + V MTG A+ G Sbjct: 230 ACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGV 281 >gi|169404550|pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of Diaminopimelate Epimerase From Bacillus Anthracis gi|169404551|pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of Diaminopimelate Epimerase From Bacillus Anthracis Length = 308 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 26 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 81 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 82 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 141 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 142 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 196 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 197 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 256 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 257 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 303 >gi|301308826|ref|ZP_07214778.1| diaminopimelate epimerase [Bacteroides sp. 20_3] gi|300833350|gb|EFK63968.1| diaminopimelate epimerase [Bacteroides sp. 20_3] Length = 269 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + + I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGN RC+ +++ ++ T ET+ GI + + Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIE--------- 113 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I + + + + V+SMGNPH + FV+ ++ DLAS Sbjct: 114 -REEVTEITVDMGMPAVGEIALEVEA--GGEIYTGTVISMGNPHLVIFVD-EMDQADLAS 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA KT Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L IEW + + VFMTG A +EG + + Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|163869368|ref|YP_001610624.1| diaminopimelate epimerase [Bartonella tribocorum CIP 105476] gi|189082826|sp|A9IZW1|DAPF_BART1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|161019071|emb|CAK02629.1| Diaminopimelate epimerase [Bartonella tribocorum CIP 105476] Length = 283 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 124/285 (43%), Positives = 169/285 (59%), Gaps = 5/285 (1%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM+G+GN+I+V DMR +T AI ALS D HFDQIM I + D I I Sbjct: 4 PFSKMDGLGNQIIVADMRESTQALTPQAILALSADPEMHFDQIMAIRNPTKNEADFHIEI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS+ ++CGNG RCV+ +LT ++F E GI+ K D ISVDMG P + Sbjct: 64 WNADGSKAKACGNGTRCVIAWLTDHNFGENFRLEAPTGIIEGKRQADNLISVDMGCPNFN 123 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ ++S+GN HAIFFVE+D+ H L +G Sbjct: 124 AKEMPVSREIVDTNHIDITAGP-----LKDACLISIGNLHAIFFVENDVQHIPLEKYGPK 178 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA +TS +SL+LRTWERG GLT ACGSAACA VA+ T R + Sbjct: 179 LEHDPLFPERCNISIACITSKKSLNLRTWERGAGLTQACGSAACAGAVAAYRRSLTQRHI 238 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V + GG L I + +++H+ MTG K ++ G L+ TG + K N Sbjct: 239 DVNLPGGKLNIFYREDDHIIMTGPIKYQFSGFLNPLTGCYKKDNS 283 >gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987] gi|81568769|sp|Q72YE7|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987] Length = 288 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 DQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|296505379|ref|YP_003667079.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171] gi|296326431|gb|ADH09359.1| diaminopimelate epimerase [Bacillus thuringiensis BMB171] Length = 288 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 91/287 (31%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI---- 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ V+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYE 283 >gi|121602373|ref|YP_988358.1| diaminopimelate epimerase [Bartonella bacilliformis KC583] gi|166224243|sp|A1UQV5|DAPF_BARBK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|120614550|gb|ABM45151.1| diaminopimelate epimerase [Bartonella bacilliformis KC583] Length = 282 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 125/284 (44%), Positives = 169/284 (59%), Gaps = 6/284 (2%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GNKI+V D+R NIT AI AL+++ THFDQIM IH D I I Sbjct: 4 PFSKMNGLGNKIIVADLRKAIHNITPQAIQALASNPQTHFDQIMAIHPPTQ-DADFRIEI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS ++CGNG RCV+ +L + +F ET GI+ K DG ISVDMG P L+ Sbjct: 63 WNADGSMAKACGNGTRCVIEWLANHNLGNNFRLETSTGIVEGKRQTDGLISVDMGRPYLN 122 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K +P++R + GP L++ +VS+GN HAIFF+E ++ + L +G Sbjct: 123 AKDMPVSREIIDTNHVDITAGP-----LQDACLVSVGNLHAIFFIESNIQNIPLEKYGPK 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L P+F E N+SIA++TS +SL LRTWERG GLT ACGSAACAS VA+ T R + Sbjct: 178 LEHDPLFPERCNISIAQITSKKSLTLRTWERGAGLTQACGSAACASAVAAYRRGLTERHI 237 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 V + G L I + D+ H+ MTG + E+ G + TG + K + Sbjct: 238 DVNLPKGILSILYRDDEHIIMTGPTEHEFSGLFNPLTGTYKKDH 281 >gi|30264977|ref|NP_847354.1| diaminopimelate epimerase [Bacillus anthracis str. Ames] gi|49187796|ref|YP_031049.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne] gi|50196964|ref|YP_052652.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor'] gi|52140590|ref|YP_086240.1| diaminopimelate epimerase [Bacillus cereus E33L] gi|165870848|ref|ZP_02215500.1| diaminopimelate epimerase [Bacillus anthracis str. A0488] gi|167634949|ref|ZP_02393267.1| diaminopimelate epimerase [Bacillus anthracis str. A0442] gi|167639995|ref|ZP_02398263.1| diaminopimelate epimerase [Bacillus anthracis str. A0193] gi|170685806|ref|ZP_02877029.1| diaminopimelate epimerase [Bacillus anthracis str. A0465] gi|170706937|ref|ZP_02897394.1| diaminopimelate epimerase [Bacillus anthracis str. A0389] gi|177652291|ref|ZP_02934794.1| diaminopimelate epimerase [Bacillus anthracis str. A0174] gi|190567303|ref|ZP_03020218.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I] gi|196040444|ref|ZP_03107744.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99] gi|227817708|ref|YP_002817717.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684] gi|228988182|ref|ZP_04148279.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229603550|ref|YP_002869180.1| diaminopimelate epimerase [Bacillus anthracis str. A0248] gi|254687270|ref|ZP_05151127.1| diaminopimelate epimerase [Bacillus anthracis str. CNEVA-9066] gi|254725282|ref|ZP_05187065.1| diaminopimelate epimerase [Bacillus anthracis str. A1055] gi|254735393|ref|ZP_05193101.1| diaminopimelate epimerase [Bacillus anthracis str. Western North America USA6153] gi|254740660|ref|ZP_05198351.1| diaminopimelate epimerase [Bacillus anthracis str. Kruger B] gi|254753078|ref|ZP_05205114.1| diaminopimelate epimerase [Bacillus anthracis str. Vollum] gi|254761420|ref|ZP_05213441.1| diaminopimelate epimerase [Bacillus anthracis str. Australia 94] gi|81685654|sp|Q632C7|DAPF_BACCZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|81715620|sp|Q81XR2|DAPF_BACAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767089|sp|C3PDH0|DAPF_BACAA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767090|sp|C3LC72|DAPF_BACAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|30259654|gb|AAP28840.1| diaminopimelate epimerase [Bacillus anthracis str. Ames] gi|49181723|gb|AAT57099.1| diaminopimelate epimerase [Bacillus anthracis str. Sterne] gi|50083026|gb|AAT70160.1| diaminopimelate epimerase [Bacillus anthracis str. 'Ames Ancestor'] gi|51974059|gb|AAU15609.1| diaminopimelate epimerase [Bacillus cereus E33L] gi|164713357|gb|EDR18882.1| diaminopimelate epimerase [Bacillus anthracis str. A0488] gi|167512076|gb|EDR87454.1| diaminopimelate epimerase [Bacillus anthracis str. A0193] gi|167529699|gb|EDR92448.1| diaminopimelate epimerase [Bacillus anthracis str. A0442] gi|170128040|gb|EDS96910.1| diaminopimelate epimerase [Bacillus anthracis str. A0389] gi|170670270|gb|EDT21010.1| diaminopimelate epimerase [Bacillus anthracis str. A0465] gi|172082297|gb|EDT67363.1| diaminopimelate epimerase [Bacillus anthracis str. A0174] gi|190561807|gb|EDV15777.1| diaminopimelate epimerase [Bacillus anthracis Tsiankovskii-I] gi|196028576|gb|EDX67183.1| diaminopimelate epimerase [Bacillus cereus NVH0597-99] gi|227005634|gb|ACP15377.1| diaminopimelate epimerase [Bacillus anthracis str. CDC 684] gi|228771479|gb|EEM19948.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229267958|gb|ACQ49595.1| diaminopimelate epimerase [Bacillus anthracis str. A0248] Length = 288 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842] gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str. T04001] gi|226724203|sp|B7IMV5|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842] gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 288 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 144/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 AILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|325294066|ref|YP_004279930.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3] gi|325061919|gb|ADY65610.1| Diaminopimelate epimerase [Agrobacterium sp. H13-3] Length = 300 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 145/292 (49%), Positives = 190/292 (65%), Gaps = 4/292 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V+FAKM G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DAFI Sbjct: 5 VEFAKMNGLGNKILVVDMRGRRDMVTPAAAIALNADPATQFDQIMAIHDPRVGGTDAFID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+NCDG++ Q+CGNG RCVV+ L+S + +FTF+T+ GIL A E+ DG ISVDMG P Sbjct: 65 ILNCDGTKAQACGNGTRCVVQALSSETGKTTFTFQTVAGILNAVEHEDGMISVDMGLPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F R IGP++ L +P V+SMGNPHAIF+V+ D +DL FG Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMEFDLERFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HPMF E N+++A+V S +L RTWERG GLT ACGSAACA+ V++ +T R Sbjct: 185 LLENHPMFPEKANITLAQVISDSALHTRTWERGAGLTLACGSAACAAAVSAARTGRTGRK 244 Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 V++ + L IEW ++NHV MTG A+ EW G +D +G + + + Sbjct: 245 VTIDVASSPVRVPLTIEWREDNHVIMTGPAEWEWSGMVDPISGAFSRDAVAE 296 >gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515] gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515] Length = 286 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 95/285 (33%), Positives = 140/285 (49%), Gaps = 16/285 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSD--AINALSTD-DNTHFDQIMLIHDFQDASVD 61 F K G GN ++ID R + I+ + I L D ++ I + + + Sbjct: 6 FEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILEP-NGNNH 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGILVAKENRDGSIS 117 A + I N DGSE Q CGNG+RC+V++L + K + ET G+ +A+ N G IS Sbjct: 65 ARMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQYND-GQIS 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG+PI+D K IP + DK F + V MGNPH IFFVE D+ Sbjct: 124 VKMGKPIIDIKSIPT--NIDKKQNFLPAFLFKESNFEYEGYAVGMGNPHLIFFVE-DITK 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L+ G + H +F E N+ +++ + +++ + WERG G T ACG+ ACA VA+ Sbjct: 181 ISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVHVAAF 240 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 L N + + GG L I W + M+G AKK + G + Sbjct: 241 NLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSGNYFL 285 >gi|294625640|ref|ZP_06704263.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600063|gb|EFF44177.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 284 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ A V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283 >gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7] gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7] Length = 1351 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 92/289 (31%), Positives = 137/289 (47%), Gaps = 14/289 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSD-AINALSTDDNTHFDQIMLIHDFQDASV 60 + + + F KM G GN + + + A+N D ++L+ + A Sbjct: 1068 EKTTLHFTKMHGCGNDYVYFNCFDRMIDNPEGFALNLSDRHFGIGGDGVILVCRSKVA-- 1125 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD----G 114 D +R+ N DGSE + CGNG+RCV +F+ R T ET+ GI+ K +R Sbjct: 1126 DGRMRMFNLDGSEGKMCGNGIRCVAKFMRDNGLVDRDLMTIETLSGIIKVKLSRHYGEVN 1185 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +VDMG ILD IP D + + N VSMGNPH I F+ ++ Sbjct: 1186 GATVDMGAAILDPVKIPCTLPAD-ENGMVVNREVDIAGEKHNVTCVSMGNPHCIVFM-NN 1243 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + ++ G P+F E VN +V +L +R WERG G T ACG+ ACA+VV Sbjct: 1244 IDDMEIEKIGPKFEHDPIFPERVNTEFIKVIDSHTLKMRVWERGSGETFACGTGACAAVV 1303 Query: 235 ASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ + V+V + GG L I + + V+MTGEA +EG + + Sbjct: 1304 AAVLNGYCPKDEEVTVMLRGGNLTIRYT-DETVYMTGEAVTVFEGDIRV 1351 >gi|315650526|ref|ZP_07903592.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986] gi|315487181|gb|EFU77497.1| diaminopimelate epimerase [Eubacterium saburreum DSM 3986] Length = 267 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 15/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + +D N + AI D ++LI A D + Sbjct: 1 MKFVKMQGAGNDYVYVDCFKEKIKNPSEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DGS CGNG RCV ++ KS F G + I V+ + Sbjct: 59 DMYNADGSRGLMCGNGARCVAKYAYDHGYVKSENFTMETGAGI------KYIKVEPKDGK 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLAS 182 ++ + + ++ + F + + + V +GNPHA+++++ + L + DL Sbjct: 113 AEYINVNMGKA---VITSEFPEKILINGEEKEFIGVDIGNPHAVYYIDSLEKLQNMDLNR 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G KH FS+ VN + +++ +R WERG G T ACG+ ACAS A+ Sbjct: 170 VGEYYEKHERFSQKVNSEFIYIKDRKNIYMRVWERGSGETLACGTGACASAFATMKKGAC 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + +V V +LGG L I +N+ ++M G+A+ + G+++ Sbjct: 230 DTSVRVHLLGGDLDISL-ENDEIYMRGKAEYVFTGEIN 266 >gi|300117992|ref|ZP_07055749.1| diaminopimelate epimerase [Bacillus cereus SJ1] gi|298724646|gb|EFI65331.1| diaminopimelate epimerase [Bacillus cereus SJ1] Length = 288 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S + R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGRMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|298377411|ref|ZP_06987364.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19] gi|298265825|gb|EFI07485.1| diaminopimelate epimerase [Bacteroides sp. 3_1_19] Length = 269 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + + I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGN RC+ +++ ++ T ET+ GI + + Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIE--------- 113 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I + + + + V+SMGNPH + FV+ ++ DLAS Sbjct: 114 -REEVTEITVDMGMPAVGEIALEVEA--GGEIYTGTVISMGNPHLVIFVD-EMDQVDLAS 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA KT Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L IEW + + VFMTG A +EG + + Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus str. Delta H] gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus str. Delta H] Length = 289 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 11/286 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 + M+ F+KM G+GN +VID ++ + + + T + D ++ + Sbjct: 2 TRMILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SG 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSI 116 D RI N DGSE + CGNG+RC +F+ + E GI + + Sbjct: 61 EGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGA 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + D + + +S+GNPHAI FV+ D Sbjct: 121 VVSSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLTALSVGNPHAIIFVD-DAE 179 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G + HP+F E +N+ V S + + TWERG G T ACG+ A ASV+A Sbjct: 180 GVDLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASVIAG 239 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 L K + +V V + GG L I+ + + +M G+A ++G L Sbjct: 240 VKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 285 >gi|262384259|ref|ZP_06077394.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B] gi|262293962|gb|EEY81895.1| diaminopimelate epimerase [Bacteroides sp. 2_1_33B] Length = 269 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 127/280 (45%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + + I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGN RC+ +++ ++ T ET+ GI + + Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIE--------- 113 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I + + + + V+SMGNPH + FV+ ++ H DLAS Sbjct: 114 -REEVTEITVDMGMPAVGEIALEVEA--GGEIYTGTVISMGNPHLVIFVD-EMDHVDLAS 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA KT Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L IEW + + VFMTG A +EG + + Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|255015978|ref|ZP_05288104.1| diaminopimelate epimerase [Bacteroides sp. 2_1_7] Length = 269 Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 127/280 (45%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + + I D ++LI A D + Sbjct: 5 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGN RC+ +++ ++ T ET+ GI + + ++ Sbjct: 63 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTEVTV 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + +A + + V+SMGNPH + FV+ ++ LAS Sbjct: 123 DMGMPAVGEMALEVEA------------GGEIYTGTVISMGNPHLVIFVD-EMDQVGLAS 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA KT Sbjct: 170 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 229 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L IEW + + VFMTG A +EG + + Sbjct: 230 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 269 >gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus sp. MC-1] gi|166225728|sp|A0LE31|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus sp. MC-1] Length = 278 Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 134/275 (48%), Gaps = 9/275 (3%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G+GN +V+D ++ DQ++ + + DA +R Sbjct: 4 RFIKMHGLGNDFVVLDHLESPRELSPQEARFWADRRRGVGCDQVVQLLPGVEGG-DAQMR 62 Query: 66 IINCDGSEVQSCGNGMRCV-VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS + CGN MRCV + R + ET+ GI+ + +I+VDMG P Sbjct: 63 IYNPDGSRAEMCGNAMRCVGLYLHEQRGMAAALAVETLAGIMRPQVTSALAITVDMGRPQ 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + IPL + + +D +G ++ +SMGNPH + V D ++LA G Sbjct: 123 WAGRAIPLDQDGEMIDA-PLEVGGQSYRM----TALSMGNPHGVVRV-ADAEGFELAKVG 176 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+ H +F +N + +V S + +R WERG G+T ACG+ ACA+ VA R Sbjct: 177 PLVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVACMRQGWVER 236 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +V + GG L I W +++ V M+G A + + G+L Sbjct: 237 DCTVVLDGGELQIVWLESDRVMMSGPATEVFRGEL 271 >gi|291561479|emb|CBL40278.1| diaminopimelate epimerase [butyrate-producing bacterium SS3/4] Length = 264 Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 26/282 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFEETVEDPCGTAKMVSDRHFGIGSDGLILIKPSRVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 + N DGS CGNG+RCV ++ + + K+ + G ++V Sbjct: 59 DMYNLDGSRGAMCGNGIRCVGKYSYDHGIVDKTEIDVETASGIKHLSMKLKDGKVGLVTV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG P + + + + F VSMGNPHA+ F++ + Sbjct: 119 DMGRPEQTSE-----------IGEPITVAGKEYRFTG----VSMGNPHAVVFMDG-IKDM 162 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G H F + N + +++R WERG G T ACG+ ACA+ VA Sbjct: 163 EIEKIGPSFEVHEKFPDRTNTEFVEIVDRGHVNMRVWERGSGETLACGTGACATAVACIL 222 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 T+ V V +LGG LLI W + + VFMTG A + + G++ Sbjct: 223 NGLTDDEVRVTLLGGDLLIRWDREKDTVFMTGPAAEVFHGEI 264 >gi|29840865|sp|Q8PPQ1|DAPF_XANAC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 284 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 85/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ A+V + LR +ERGVG T ACGS ACA+ Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283 >gi|253682263|ref|ZP_04863060.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873] gi|253561975|gb|EES91427.1| diaminopimelate epimerase [Clostridium botulinum D str. 1873] Length = 273 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 125/280 (44%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G GN +VID R N + A D I+L+ + + D Sbjct: 1 MYFTKMQGTGNDFVVIDDRKGIFNGRESEVAKKVCHRRFGIGADGILLVRKSEIS--DIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 + IIN DGS CGNG+RC R++ + ET GI +A N + + + Sbjct: 59 MEIINADGSYAAMCGNGIRCFARYVYDSKIVLKDIINIETGDGIKIAHLNILDNTVLGIT 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + ++ L P + ++ +N+ + + +D+ Sbjct: 119 INMGEFSLNPEDIPANCKEKIMNKKIYINNKEYIINSMKLGVPHTVVMCKINDID----I 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + K+ +F EG N++ V +++ ++TWERG G T ACG+ +CAS S L Sbjct: 175 QEGKYIEKYDLFKEGTNVNFCEVIDEDTIKVKTWERGAGPTLACGTGSCASFAISNILGY 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V + GG L+ E +N VFMTG A+ + G++++ Sbjct: 235 VGDKVKVLVPGGELITELK-DNKVFMTGPAEIVFTGEINL 273 >gi|91762613|ref|ZP_01264578.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1002] gi|91718415|gb|EAS85065.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1002] Length = 274 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 4/276 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R N+ D I + DQ++LI ++ +DA I Sbjct: 3 IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANIE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV L+ +K T T G L +K + + ++G P + Sbjct: 61 FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W+ IPL++ D D + I N+ +++GNPH IFFV+ D+ +DL + G Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFVD-DIEAFDLKNIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP+F E N+++A+V + + ++ WERG GLT ACG+AACA+ VA+ + + Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ G L I + N + M G + + Sbjct: 239 TDIEFALGSLTISIDERNSIHMKGPVSDIKNINIKL 274 >gi|160943083|ref|ZP_02090320.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii M21/2] gi|158445552|gb|EDP22555.1| hypothetical protein FAEPRAM212_00562 [Faecalibacterium prausnitzii M21/2] gi|295104700|emb|CBL02244.1| diaminopimelate epimerase [Faecalibacterium prausnitzii SL3/3] Length = 279 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 120/281 (42%), Gaps = 9/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G N + +D R +NI + + + D I+ I A DA Sbjct: 3 LSFTKMQGCANDYIYLDCRTSGVPENIAALSERLSRRHFSIGADGIICICAPVTAGADAM 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE + CGNG+RCV +L + K +T+ G+ +G V+MG Sbjct: 63 MRIFNADGSEGKMCGNGIRCVAEWLYTHGMAKPKLAIDTLSGLKTVARMGEGLWQVEMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +P + + + + L +S+GNPH + V ++ L Sbjct: 123 YTAMAAALP---AVNMGEGPLVDLPLEVEENLWRVTCISVGNPHCVTIV-PEVDSLKLEQ 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 179 IGPGFEHHENFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTELGIC 238 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I + MTG A+ EG ++ Sbjct: 239 PAGEDVHVQLRGGELTIRVLPGKQLLMTGAAETVCEGTTEV 279 >gi|86359535|ref|YP_471427.1| diaminopimelate epimerase [Rhizobium etli CFN 42] gi|123510509|sp|Q2K386|DAPF_RHIEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|86283637|gb|ABC92700.1| diaminopimelate epimerase protein [Rhizobium etli CFN 42] Length = 301 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 150/296 (50%), Positives = 199/296 (67%), Gaps = 5/296 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRSDKVTPAAAVALNADPQTEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAIEHEDGTISVDMGK 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA Sbjct: 122 PVFDWDRIPLAEEFHDTSRIELQIGPIDNPLLHSPSAMSMGNPHAIFWVDKDVMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+VTS ++ RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 R V + + L IEW + ++HV MTG A+ EW G+LD TG W + + + Sbjct: 242 GRKVKINVASAKPPAMLSIEWRERDDHVIMTGPAEWEWSGRLDPATGCWSRDDARE 297 >gi|28198606|ref|NP_778920.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1] gi|28056690|gb|AAO28569.1| diaminopimelate epimerase [Xylella fastidiosa Temecula1] Length = 275 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 1 MHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGE 122 RI N DGS Q CGNG RCV +L + F + G +V+MG Sbjct: 61 RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + + + VSMGNPHA+ V+ + + Sbjct: 121 PVFEPERIPLSGFPNALGEYVLSLQG----EVLCCGAVSMGNPHAVVEVDL-IDVAPVER 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+S +V + LR +ERG G T ACGS ACA+ V + Sbjct: 176 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 235 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R V V + GG L ++W V ++G A+ ++G Sbjct: 236 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 273 >gi|295698459|ref|YP_003603114.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA] gi|291157427|gb|ADD79872.1| diaminopimelate epimerase [Candidatus Riesia pediculicola USDA] Length = 280 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 134/286 (46%), Gaps = 11/286 (3%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M+ ++ F+KM G+GN ++++ I + FDQ++++ + + Sbjct: 1 MKKKIL-FSKMHGLGNDFVIVNTIHQKFFPRPKIIRMFARRTLGIGFDQLLILRESHSSR 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK--ENRDGSIS 117 D + +I N DG+E CGNG RC+ +++ + +K F + V ++R I+ Sbjct: 60 FDFYCQIFNSDGTESFQCGNGFRCLAKYIYVNINKKPFHIIRTKKHTVITSIKDRGKEIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P K + + + + NH +V++GN H +F ++D Sbjct: 120 VNMGTPRFISKKVLTVFQKEWLRQLLTFEKEYNHFE-----MVNIGNSHLVFIIQDSKEI 174 Query: 178 YDLASFGNLL-AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + + +F +G+N+++ ++ + + + L+ +ERG G T +CGS ACASV Sbjct: 175 VRIFRLIHSSLRINELFPKGININLMQIINRKKIFLKVYERGSGETKSCGSGACASVAFG 234 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 N V V G L + W + +FMTG A ++G + I Sbjct: 235 IKYGFLNNLVFVYSEEGYLKVYWKGRDYPIFMTGPATYVYDGSISI 280 >gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W] gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108] gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97] gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187] gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102] gi|81613513|sp|Q6HBW8|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226724205|sp|B7HUS8|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767091|sp|C1EX98|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W] gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108] gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97] gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187] gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102] Length = 288 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 283 >gi|58384654|gb|AAW72674.1| diaminopimelate epimerase [Buchnera aphidicola (Cinara cedri)] Length = 281 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 ++ + F KM G+GN ++I + +S+ I S FDQ++LI ++ Sbjct: 3 LRKKFIFFFKMHGLGNDFVLI-YFKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 + RI N +G EV+ CGNG RCV +L ++K K T L + + Sbjct: 62 AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG PI K IP ++F + + VV++GNPH + V ++L + Sbjct: 122 VDMGTPIFTPKNIPFITK-----TEKFFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G+ ++ + +F EGVN+ ++ S + + LR +ER VG T ACGS ACA+V Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280 + V VK+L G L I W+ + ++M+G+A ++G + Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280 >gi|237756085|ref|ZP_04584662.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691757|gb|EEP60788.1| diaminopimelate epimerase [Sulfurihydrogenibium yellowstonense SS-5] Length = 286 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 78/281 (27%), Positives = 132/281 (46%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +V+D +T D I + D I++ + D +RI Sbjct: 7 FVKSHGLGNDYIVLDSDKIDFELTQDLIKKICDVHYGIGSDGILV--KYNSDVADFKLRI 64 Query: 67 INCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGS------ISV 118 N DGSE + GNG+R + + + ++ FT ET GI+ AK I+V Sbjct: 65 FNPDGSEAEKSGNGLRIFCKFLYDYGYIDKEEFTVETKGGIVKAKIEEKNRFGKAKIITV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ I + K IP+ ++ ++ +G VS+GNPH + +++L Sbjct: 125 DMGKAIFNAKQIPVNTDKEEFMSEKITVGDKEFE----VSCVSVGNPHCVII-KENLDEE 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ +G ++ HP+F +N+ + S + WERG G T A GS++C Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T+R + +KM+GG L I ++ ++ MTGE ++ G + Sbjct: 240 KGLTDREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYI 280 >gi|325299792|ref|YP_004259709.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170] gi|324319345|gb|ADY37236.1| Diaminopimelate epimerase [Bacteroides salanitronis DSM 18170] Length = 266 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 81/280 (28%), Positives = 127/280 (45%), Gaps = 20/280 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN + ++ + A S D ++LI D + Sbjct: 3 IEFTKMQGAGNDYIYVNTLIYPLPNPEELAVAWSRPHTGIGSDGLVLIGSS--GKADFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE + CGN RC+ + ++ T +T+ GI + + + + Sbjct: 61 RIFNADGSEAKMCGNASRCIGKYVYEYGLTRKTEVTLDTLSGIKTLRLHVEDGKVDAVTV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I + R VSMGNPH + FV+ D+ DL Sbjct: 121 DMGIPAEI-------------HPVDLGEGYPYREGIAVSMGNPHLVIFVD-DMEQVDLPR 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L +HP+F + VN+ A+V + + +R WERG G+T ACG+ ACA+ VAS H+ Sbjct: 167 VGPVLERHPLFPDRVNVEFAQVLAPGRVRMRVWERGSGITMACGTGACATAVASAYTHRC 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 + M GG L I W +FMTG A+K ++G + + Sbjct: 227 PGESDIIMDGGTLRIRWAGEGTRLFMTGPAEKVFDGVITV 266 >gi|301056426|ref|YP_003794637.1| diaminopimelate epimerase [Bacillus anthracis CI] gi|300378595|gb|ADK07499.1| diaminopimelate epimerase [Bacillus cereus biovar anthracis str. CI] Length = 288 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ + F ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFAIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|118480026|ref|YP_897177.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam] gi|166224241|sp|A0RKC7|DAPF_BACAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118419251|gb|ABK87670.1| diaminopimelate epimerase [Bacillus thuringiensis str. Al Hakam] Length = 288 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGN HA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNSHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 283 >gi|256842003|ref|ZP_05547508.1| diaminopimelate epimerase [Parabacteroides sp. D13] gi|256736319|gb|EEU49648.1| diaminopimelate epimerase [Parabacteroides sp. D13] Length = 286 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 124/280 (44%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + + I D ++LI A D + Sbjct: 22 IRFTKMHGAGNDYIYVNTMVYPIDNPEELSIAWSKPHTGIGSDGLVLIGSSDIA--DFSM 79 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE CGN RC+ +++ ++ T ET+ GI + + + Sbjct: 80 HIYNADGSEAMMCGNASRCIGKYVYEAGLTQKNKVTLETLSGIKELQLKIEREEVTE--- 136 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + V+SMGNPH + FV+ ++ DLAS Sbjct: 137 ---------VTVDMGMPAVGEIALEVEAGGEIYTGTVISMGNPHLVIFVD-EMDQVDLAS 186 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL P+F + N+ +V + + +R WERG G+T ACG+ ACA+ VA KT Sbjct: 187 VGPLLECLPLFPDRTNVEFVQVLKPDEVRMRVWERGSGITQACGTGACATAVAGVVRGKT 246 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 R V M GG L IEW + + VFMTG A +EG + + Sbjct: 247 KRKTKVIMDGGPLTIEWDERSGKVFMTGGAVNVFEGFIKV 286 >gi|294666819|ref|ZP_06732052.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603403|gb|EFF46821.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 284 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSDGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 AAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPVTAHAVERLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ A V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGALLQQNAAFPDSVNVGFAHVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVQVSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 283 >gi|270308057|ref|YP_003330115.1| diaminopimelate epimerase [Dehalococcoides sp. VS] gi|270153949|gb|ACZ61787.1| diaminopimelate epimerase [Dehalococcoides sp. VS] Length = 284 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 140/280 (50%), Gaps = 8/280 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K++ +GN +++D +G + A++ D +ML+ A D +R Sbjct: 1 MKFTKLQSVGNDFVLVDPQGEERDWPKLALHMCHRHFGAGADGLMLLLPS--AKADFRMR 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSE + CGNG+RC++ ++ + R + ET+ GI A+ +DG I MG+ Sbjct: 59 IFNADGSEAEICGNGLRCLIHYIVANKLIGSRDELSIETLAGIRHAQIFKDGRIRTTMGK 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVEDDLYHYD 179 P+ + IP+A D I +VSMGNPHAI F + + Sbjct: 119 PMFEAHQIPVAAEPDPKHYSGQLISDFPLNINNRRVLVSLVSMGNPHAIHFCTKPVEEFL 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L G+L+ H F + N +A + E + +R WERGVG T CGS A A VA+ L Sbjct: 179 LGEVGSLVETHKAFPKRTNFEVANILDTEHIKVRVWERGVGETLGCGSGASAVAVAAQIL 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V +K+ GG L +EW ++ V++TG+A+ + G+ Sbjct: 239 GYVGKFVYIKLPGGTLGVEWDGHDDVYLTGKAEIIYTGEW 278 >gi|15889949|ref|NP_355630.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58] gi|22256736|sp|Q8UC03|DAPF_AGRT5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15157908|gb|AAK88415.1| diaminopimelate epimerase [Agrobacterium tumefaciens str. C58] Length = 299 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 147/294 (50%), Positives = 191/294 (64%), Gaps = 4/294 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V+FAKM G+ NKILV+DMRG D +T A AL+++ T FDQIM IHD + DAFI Sbjct: 5 VEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDAFID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I+NCDG++ Q+CGNG RCVV+ L+S + SFTF+T+ GIL A E+ DG ISVDMG P Sbjct: 65 ILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGLPRF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ F R IGP++ L +P V+SMGNPHAIF+V+ D +DL FG Sbjct: 125 RWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLERFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HPMF E N+++A+V S +L RTWERG GLT ACGSAACAS V++ +T R Sbjct: 185 LLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRTGRK 244 Query: 246 VSVKMLGG----GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 V++ + L I+W ++NHV MTG A+ EW G +D TG W + + A Sbjct: 245 VTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWARDAVERGA 298 >gi|254524684|ref|ZP_05136739.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14] gi|219722275|gb|EED40800.1| diaminopimelate epimerase [Stenotrophomonas sp. SKA14] Length = 283 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 124/281 (44%), Gaps = 9/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S+ + F+KM G GN +VID+R T + L+ DQI+ I + Sbjct: 6 STALRFSKMHGAGNDFVVIDLRDGTAPPTPELAARLADRHTGVGCDQILTIEAPRADGSV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 A RI N DGS + CGNG RC+ +L + F ++ K DG +V Sbjct: 66 ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDVFVIDSPLASHEVKVLGDGQFAVT 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +PL + + + F VSMGNPHA+ V + Sbjct: 126 MGVPAFEPSNVPLVGFAHPREEYLLPLQGESVRF----AAVSMGNPHAVIEVGL-IDAAP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H F VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPDHARLRVFERGVGETLACGSGACAAAVTLMQR 240 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + R + + GG L I+W + V M G +EG+ Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGEW 281 >gi|323141715|ref|ZP_08076589.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067] gi|322413790|gb|EFY04635.1| diaminopimelate epimerase [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 81/294 (27%), Positives = 119/294 (40%), Gaps = 18/294 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + +D +S D ++ + A D + Sbjct: 3 IEFTKMHGAGNDYVYVDCTKEMLPNPGAISEYVSHRRFGIGSDGLICVCKSDVA--DFKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE------TIRGILVAKENRDGSISV 118 R+ N D SE + CGNG+RCV +F+ + T +V + V Sbjct: 61 RMFNADRSEGKMCGNGVRCVAKFVHDKGLTDKTTITLETLSGVKEIEMVVENGEVVGAKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRF-----HIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 DMG+P+ IP+ H N +SMGNPH + FV+ Sbjct: 121 DMGKPVFRATEIPMNCDHYIFVDQAIVLNDNHDDVTKEKVFYNGTAISMGNPHFVTFVD- 179 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ +L G H +F EGVN +V ++ R WERG G T ACG+ A A Sbjct: 180 DVDSLNLEELGPQFEHHKLFPEGVNTEFVQVLDKNTVKFRVWERGSGETWACGTGASAVT 239 Query: 234 VASGCL---HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA L K ++V GG L + N+HV + G A ++G +DI Sbjct: 240 VACIMLNKAGKKGEPLNVHCKGGLLKVTHELNDHVTLEGNAVAVFDGVIDIPES 293 >gi|194367248|ref|YP_002029858.1| diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3] gi|194350052|gb|ACF53175.1| Diaminopimelate epimerase [Stenotrophomonas maltophilia R551-3] Length = 283 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 9/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F+KM G GN +VID+R T + L+ DQI+ I + Sbjct: 6 SKALRFSKMHGAGNDFVVIDLRDGTVPPTPELAARLADRHTGVGCDQILTIEAPRAEGSV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 A RI N DGS + CGNG RC+ +L + +F ++ K DG +V Sbjct: 66 ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDAFVIDSPLASHQVKVLGDGHYAVT 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +PL R VSMGNPHA+ V + Sbjct: 126 MGVPAFEPANVPLVG----FAHPREEYLLPLQGETVRFAAVSMGNPHAVIEVGL-IDAAP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+LL +H F VN+ A+V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 VERVGSLLQQHASFPRSVNVGFAQVMNPAHARLRVFERGVGETLACGSGACAAAVTLMQR 240 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + R + + GG L I+W + V M G +EG+ Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGEW 281 >gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 288 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NIGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 279 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 119/281 (42%), Gaps = 9/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G N + +D R +NI + + + D I+ I Q A D Sbjct: 3 LSFTKMQGCANDYIYLDCRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGADGM 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE + CGNG+RCV +L + K +T+ G+ G V+MG Sbjct: 63 MRIFNADGSEGRMCGNGIRCVAEWLYTHGIAKETLAIDTLSGLKTVTHKGAGLWQVEMGA 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +P + + + + +S+GNPH + VE D+ L Sbjct: 123 YSAMPASLP---AVNMGEEPLVDKELTVDGKTWHVTCISVGNPHCVTVVE-DVDSLKLEE 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 179 IGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVAALTELGIC 238 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V++ GG L I + MTG A+ EG ++ Sbjct: 239 PAGEDIHVQLRGGVLTIRVLPGRQLLMTGAAETVCEGTTEV 279 >gi|294674621|ref|YP_003575237.1| diaminopimelate epimerase [Prevotella ruminicola 23] gi|294471930|gb|ADE81319.1| diaminopimelate epimerase [Prevotella ruminicola 23] Length = 267 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 78/278 (28%), Positives = 121/278 (43%), Gaps = 16/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D + A I D ++LI D + Sbjct: 4 IHFTKMHGCGNDYIYVDTTQYNIPDPEAASIKWSHRHKGIGSDGLVLIGKSTVPEADFTM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 RI N DGSE CGN RC+ ++L R + + +S+ + + Sbjct: 64 RIFNADGSEAMMCGNASRCIGKYLYERGMTDLTEI------RLLTLSGVKVLSLHVTDGF 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++ + + + + H VSMGNPH + F + + G Sbjct: 118 VESVTVDMGEPVLENESQFLPSRNPGH-----GTFVSMGNPHYVIFTD---DVDQVGEAG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L HP F + N+ ARV + + R WERG G+T ACG+ ACA+ VA+ K +R Sbjct: 170 PALEYHPAFPQRCNIEFARVEADGGIRTRVWERGSGITQACGTGACATAVAAALTGKASR 229 Query: 245 AVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + M GG L IEW + +NHV+MTG A+ +G++ + Sbjct: 230 TSQIVMDGGTLTIEWSEQDNHVYMTGPAEFVCDGEIAL 267 >gi|116515294|ref|YP_802923.1| hypothetical protein BCc_380 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257148|gb|ABJ90830.1| diaminopimelate epimerase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 281 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 85/285 (29%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 ++ + F KM G+GN ++I + +S+ I S FDQ++LI ++ Sbjct: 3 LRKKFIFFFKMHGLGNDFVLI-YSKKYLLFSSELIKKWSNRFLGIGFDQLLLIQKKKNNK 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSIS 117 + RI N +G EV+ CGNG RCV +L ++K K T L + + Sbjct: 62 AQFYYRIFNSNGIEVEQCGNGARCVAYYLFLKKKIKEKKICVSTNNRYLFLEHIKKNIFK 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG PI K IP ++F + + VV++GNPH + V ++L + Sbjct: 122 VDMGTPIFTPKNIPFITK-----TEKFFYSIIFNKKKYFFSVVTLGNPHCVIQV-NNLKN 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G+ ++ + +F EGVN+ ++ S + + LR +ER VG T ACGS ACA+V Sbjct: 176 FPVKKVGSYISNNILFPEGVNVGFMQIISKKKILLRVYERHVGETNACGSGACAAVAIGI 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD--NNHVFMTGEAKKEWEGKLD 280 + V VK+L G L I W+ + ++M+G+A ++G + Sbjct: 236 RNKLLSNHVVVKLLYGKLKIFWNGILGDTLYMSGKASHVYDGYIK 280 >gi|254292484|ref|YP_003058507.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814] gi|254041015|gb|ACT57810.1| diaminopimelate epimerase [Hirschia baltica ATCC 49814] Length = 281 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 104/277 (37%), Positives = 157/277 (56%), Gaps = 9/277 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + +M G GN ++D RG ++++A+ ++ N DQ++ + + D F+R Sbjct: 1 MKYYQMNGCGNAFAILDGRGEKLRLSAEAVRRIAKSAN--ADQVVSLENSMRG--DIFMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--SISVDMGEP 123 I N GSEV +CGN RCV + R + ET G+L+A + +G ISVDMG P Sbjct: 57 IWNNTGSEVAACGNVSRCVGWIMMRERNRDTIKIETEAGLLIATRHGNGDTMISVDMGSP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +L W+ IPLA D D IGP++ +L+ P V+MGNPH +FFV+ +L D+ Sbjct: 117 LLKWEEIPLAERMDTRGID-VKIGPIDAPYLQLPGAVNMGNPHCVFFVD-ELDAVDVVGI 174 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ H MF E N+ A+V + + LR WER GLT ACG+ ACA+VVA N Sbjct: 175 GPLIEGHMMFPEKANVGFAQVLGRDCIRLRVWERDAGLTKACGTGACAAVVAGVRKGLLN 234 Query: 244 RAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 R+ +V + GG L I+W + ++HV MTG + E + ++ Sbjct: 235 RSCTVFVDGGDLHIDWREKDDHVIMTGPIELERQAEI 271 >gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820] gi|226724202|sp|B7JDJ2|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820] Length = 288 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R ++V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYE 283 >gi|222445674|ref|ZP_03608189.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii DSM 2375] gi|222435239|gb|EEE42404.1| hypothetical protein METSMIALI_01315 [Methanobrevibacter smithii DSM 2375] Length = 286 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTHFDQIMLIHDFQDASVD 61 + F+KM GIGN +ID +D A D ++ + A D Sbjct: 6 LKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--D 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS---- 115 R+ N DGSE + CGNG+RC F+ + K++ T ET GI + + Sbjct: 64 IGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVL 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG IP+A D+ + N +S+GNPHAI FV+ ++ Sbjct: 124 FKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLD----TTFNTTAISVGNPHAIIFVD-NI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A ++ ++ Sbjct: 179 DEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAIS 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 L + V + + GG L ++ FM G A+ ++G++ Sbjct: 239 GFKLGLFDSEVLLHLPGGDLKFNVYEKEEGLGAFMEGPAQLVFDGEI 285 >gi|311031748|ref|ZP_07709838.1| diaminopimelate epimerase [Bacillus sp. m3-13] Length = 284 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 21/291 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQD 57 M+S F KM G+GN + ++M ++ A+ + D ++LI + Sbjct: 1 MRSF--QFTKMHGLGNNYIYVNMFEEKLKEEELSNLAVKVANIHTGIGSDGMILICPSEV 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKEN 111 A V +RI N DGSE ++CGNG+RCV ++ + TF+ + + + Sbjct: 59 APV--KMRIFNNDGSEGKNCGNGLRCVAKYAYEHGIVQRKTFKIETLSGLVEAEMELEAG 116 Query: 112 RDGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + S++VDMGEP L K IP L + + + F + + VSMGNPH IF+ Sbjct: 117 KVTSVTVDMGEPRLSTKEIPILVEEKEALVAEPFTVDGETYEI----TTVSMGNPHVIFY 172 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ D+ L + G ++ K P F EGVN+ V + + L R WERG G+T ACG+ AC Sbjct: 173 LD-DIKDAPLTTLGPVVEKDPRFPEGVNVEFVEVVAEDELHFRVWERGSGITQACGTGAC 231 Query: 231 ASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A+VVAS +KT N+ V + GG L I W + V M G A+ G Sbjct: 232 AAVVASVLNNKTARNKETVVHLAGGDLFITWTKDGSVKMRGPAEVICTGSF 282 >gi|261349778|ref|ZP_05975195.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374] gi|288860562|gb|EFC92860.1| diaminopimelate epimerase [Methanobrevibacter smithii DSM 2374] Length = 286 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 80/287 (27%), Positives = 127/287 (44%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTHFDQIMLIHDFQDASVD 61 + F+KM GIGN +ID +D A D ++ + A D Sbjct: 6 LKFSKMHGIGNDFPIIDESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--D 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS---- 115 R+ N DGSE + CGNG+RC F+ + K++ T ET GI + + Sbjct: 64 IGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVL 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG IP+A D+ + N +S+GNPHAI FV+ ++ Sbjct: 124 FKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLD----TTFNTTAISVGNPHAIIFVD-NI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A ++ ++ Sbjct: 179 DEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAIS 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 L + V + + GG L ++ FM G A+ ++G++ Sbjct: 239 GFKLGLFDSEVLLHLPGGDLKFNVYEKKEELGAFMEGPAQLVFDGEI 285 >gi|182681289|ref|YP_001829449.1| diaminopimelate epimerase [Xylella fastidiosa M23] gi|32129480|sp|Q87DI4|DAPF_XYLFT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229813255|sp|B2IA16|DAPF_XYLF2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|182631399|gb|ACB92175.1| Diaminopimelate epimerase [Xylella fastidiosa M23] gi|307579740|gb|ADN63709.1| diaminopimelate epimerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 284 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 84/278 (30%), Positives = 127/278 (45%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGE 122 RI N DGS Q CGNG RCV +L + F + G +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + + + VSMGNPHA+ V+ + + Sbjct: 130 PVFEPERIPLSGFPNALGEYVLSLQG----EVLCCGAVSMGNPHAVVEVDL-IDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+S +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGPLLQQHSAFPESVNVSFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R V V + GG L ++W V ++G A+ ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 282 >gi|295101507|emb|CBK99052.1| diaminopimelate epimerase [Faecalibacterium prausnitzii L2-6] Length = 279 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 81/281 (28%), Positives = 117/281 (41%), Gaps = 9/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+G N + +D R +NI + + + + D I+ I A D Sbjct: 3 LSFTKMQGCANDYIYLDCRESGVPENIAALSQDLSRRHFSIGADGIICICAPVTAGADGR 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE Q CGNG+RCV +L + K +T G V+MG Sbjct: 63 MRIFNADGSEAQMCGNGVRCVAEWLYTHGTAKETLVVDTGSGPKTITRKGRQLWQVEMGG 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +P + + + +S+GNPH + V+ D+ L Sbjct: 123 YSAMAAALP---AVNMGEGPLVDCPLTVEGRTWRVACISVGNPHCVTVVD-DVDSLKLED 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G KHP F E +N +V L +R WERG G T ACG+ CA+V A L Sbjct: 179 IGPAFEKHPNFPERINTEFVQVVDSTHLKMRVWERGSGETWACGTGTCATVAALTELGVC 238 Query: 243 --NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L+I + MTG A EG ++ Sbjct: 239 PAGEDVHVQLRGGELIIRVLPGKKLLMTGSAVTVCEGVTEV 279 >gi|71082963|ref|YP_265682.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1062] gi|123647306|sp|Q4FP10|DAPF_PELUB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71062076|gb|AAZ21079.1| Diaminopimelate epimerase (DAP epimerase) [Candidatus Pelagibacter ubique HTCC1062] Length = 274 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 4/276 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + KM+G+GN ++ID R N+ D I + DQ++LI ++ +DA + Sbjct: 3 IKAFKMDGLGNDFVIIDQRSQDFNLDKDQIIKICDRSFIGCDQLILIK--KNKEIDANVE 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS +CGNG RCV L+ +K T T G L +K + + ++G P + Sbjct: 61 FFNSDGSISGACGNGTRCVADLLSKESGKKEITLLTTSGSLKSKILGNNLVETEIGIPKV 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W+ IPL++ D D + I N+ +++GNPH IFFV+ D+ +DL + G Sbjct: 121 NWQEIPLSKQLDTQDL-KIEIIDRNNTKHIGGIAINVGNPHIIFFVD-DIEAFDLKNIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 + HP+F E N+++A+V + + ++ WERG GLT ACG+AACA+ VA+ + + Sbjct: 179 KIENHPLFPEKCNVTLAKVINRNLIKVKVWERGAGLTKACGTAACATAVAANINNLVEKT 238 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + G L I + N + M G + + Sbjct: 239 TDIEFVLGSLTISIDERNSIHMKGPVSDIKNINIKL 274 >gi|71897643|ref|ZP_00679888.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] gi|71732546|gb|EAO34599.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] Length = 284 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 126/278 (45%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS--ISVDMGE 122 RI N DGS Q CGNG RCV +L + F + G +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSVATEHFLIDSPVQTHSVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + + + VSMGNPHA+ ++ + + Sbjct: 130 PVFEPERIPLSGFPNALGEYVLSLQG----EVLRCGAVSMGNPHAVVEIDL-IDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGPLLQQHAAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R V V + GG L ++W V ++G A+ ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 282 >gi|295401375|ref|ZP_06811346.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius C56-YS93] gi|312109665|ref|YP_003987981.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1] gi|294976590|gb|EFG52197.1| diaminopimelate epimerase [Geobacillus thermoglucosidasius C56-YS93] gi|311214766|gb|ADP73370.1| diaminopimelate epimerase [Geobacillus sp. Y4.1MC1] Length = 284 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 147/283 (51%), Gaps = 19/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A+ + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEETIPESLLSLLAVKVSNVNTGIGADGMILICPSKVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISV 118 RI N DGSE ++CGNG+RCV +++ +SF ET+ G++ A+ + ++++ Sbjct: 64 RIFNSDGSEGKNCGNGLRCVAKYVYEHGIVNDRSFFIETLSGLVKAEVEVENGAVTNVTI 123 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P L IP+ +++ + F + + VSMGNPH IF+V+ D+ Sbjct: 124 DMGKPRLKRSEIPMVGPEAERVVAEPFEVDGQLYEI----TAVSMGNPHVIFYVD-DINQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G ++ K F EGVN+ V + L R WERG G+T ACG+ ACA+VVAS Sbjct: 179 AAVTSLGPIVEKDKRFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 KT N+ V + GG L I W D +V MTG A+ G Sbjct: 239 LNGKTARNKETIVHLAGGDLTITWTDEGNVRMTGPAETICTGV 281 >gi|298674444|ref|YP_003726194.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303] gi|298287432|gb|ADI73398.1| diaminopimelate epimerase [Methanohalobium evestigatum Z-7303] Length = 276 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 21/284 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M++F K+ G GN +VID + A+ D I+ I Sbjct: 1 MIEFTKLHGNGNDFIVIDEFENEIVPENQKADFAVKYCRRKFGIGADGILYI--SGSDKA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRGILVAKENRDGS 115 D +R++ D SE + CGNG+RC+V++ T + + K++ Sbjct: 59 DMKMRLLQPDASEAEMCGNGIRCLVKYAYDNGYINLGESTVETIADVYNVKTRKDDGGFW 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V+MG+P+ IP D + VV+ G PHA+ FVE+ Sbjct: 119 VKVNMGKPLTKRSDIPAQGDSDDDFINVDLHD-------YPVSVVNTGVPHAVIFVEN-- 169 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 +++ + + F G N++ R+ S + + +RT+ERGV T +CG+ + AS Sbjct: 170 LDFNIQNTAPKIRFDETFPNGANVNFVRIDSNDEITIRTYERGVEDETLSCGTGSVASAY 229 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 S L K N V V GG L IE ++M G A+ ++G Sbjct: 230 ISNLLGKVNNPVLVHTKGGMLNIELDGKGFLYMEGPAETIYKGV 273 >gi|167535696|ref|XP_001749521.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771913|gb|EDQ85572.1| predicted protein [Monosiga brevicollis MX1] Length = 1222 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 117/285 (41%), Gaps = 26/285 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS- 59 M ++ + FAKM G+GN +V+D + +++I + Sbjct: 948 MAATTIRFAKMHGLGNDFVVVDSVRQSLPPLGSSW-------------LLVIEPPPASGP 994 Query: 60 ---VDAFIRIINCDGSEVQSCGNGMRC---VVRFLTSRMKRKSFTFETIRGILVAKENRD 113 +D RI N DGSEV CGNG RC V T L D Sbjct: 995 ELQIDFVYRIFNADGSEVGQCGNGARCLAAYVYRYHLAQAGAQLRVRTRNSELTMHGTPD 1054 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G+I+V+MG P D +PL + + VSMGNPH + V+ Sbjct: 1055 GAITVNMGCPKFDPAQVPLLAPARAD----VYHLALESGATICCGAVSMGNPHLVTLVD- 1109 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D+ + G L H E N+ ++ S+ LR +ERG G T ACGS ACA+V Sbjct: 1110 DVGTAPVLELGPQLESHARCPERANVGFMQIVDAHSVRLRVFERGAGETRACGSGACAAV 1169 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + V+V + GG L I W + ++MTG A +EG Sbjct: 1170 AVGIVQDRLLSPVTVSLPGGVLEIAWAGFDAPLYMTGPAAHVFEG 1214 >gi|160937939|ref|ZP_02085297.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC BAA-613] gi|158439165|gb|EDP16919.1| hypothetical protein CLOBOL_02833 [Clostridium bolteae ATCC BAA-613] Length = 280 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 24/294 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M++ M +F KM+G GN + +D + AI D ++LI + A Sbjct: 1 METDM-EFTKMQGTGNDYVYVDCFKETVRDPAKTAIYVSDRHFGIGSDGLILICPSRTA- 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGS 115 D + + N DGS+ CGNG+RCV +++ +++ T ET+ GI + + Sbjct: 59 -DCRMEMYNADGSQGIMCGNGVRCVGKYVYDHGLVDRDKRTITVETLAGIKTLELEIE-- 115 Query: 116 ISVDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 D K + + + R +++GNPHAI++V+ Sbjct: 116 ----------DGKAVSVTVDMGEAALTSRLPEDITVDGKEYRFVGINVGNPHAIYYVDQ- 164 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + DL G H F + VN V + L++R WERG G T ACG+ A ASV Sbjct: 165 VDCLDLERIGPAFENHERFAPDRVNTEFIHVADRKHLEMRVWERGSGETWACGTGATASV 224 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKTGKW 286 +AS + T V + GG L+I + ++ H+FMTG A + + G +DI + Sbjct: 225 MASILMGYTEDEAEVALRGGKLVIRYERESGHLFMTGPAVEVFRGSIDIPEEIY 278 >gi|300726014|ref|ZP_07059473.1| diaminopimelate epimerase [Prevotella bryantii B14] gi|299776728|gb|EFI73279.1| diaminopimelate epimerase [Prevotella bryantii B14] Length = 287 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 133/287 (46%), Gaps = 7/287 (2%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLI-HDFQDASV 60 S+ + F KM+G GN + ++ S A S D ++LI A Sbjct: 2 SNKIRFTKMQGAGNDYIYVNTLAYPIPNPSLASQIWSKYHFKIGSDGLVLIGRPSDPAKA 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISV 118 D + I N DGSE CGN RC+ ++L + ++ ET+ G+ + K + + Sbjct: 62 DYSMHIYNADGSEAMMCGNASRCIGKYLYEKGLTFQEEIRLETLSGVKILKLHLIDNKET 121 Query: 119 DMGEPI-LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 E + ++ + N VSMGNPH + FV +D+ Sbjct: 122 GKTEVESVTVDMLEPQLEEKAQYNAEVGKNIQIEDRIFNGTFVSMGNPHYVIFV-NDIDT 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+A +G+ L HP F + N+ A V + + R WERG G+T ACG+ ACA+ VA+ Sbjct: 181 IDIARYGSKLEVHPAFPQRCNIEFAEVRANGEIRTRVWERGSGITLACGTGACATAVAAA 240 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 + R + M GG L IEW +NNH++MTG A +EG++++ Sbjct: 241 LTGRAERKSKIVMDGGTLEIEWKANNNHIYMTGPAAFAFEGEIELPE 287 >gi|25008346|sp|Q8K901|DAPF_BUCAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21623478|gb|AAM68104.1| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 284 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 88/280 (31%), Positives = 142/280 (50%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +VI+ +T I LS + FDQ++LI + D Sbjct: 11 IYFSKMHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RCV FL + + ++ T + + K D +I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + I +++ + F + +N +VS+GNPH + VE + + + Sbjct: 131 PSFKLEEISISKKI---VLNNFSVKLINKNL--KCSLVSIGNPHCVIKVE-SINNAPVKK 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL K+ +F +G+N+ +V + + LR +ER VG T +CGS ACA+V + Sbjct: 185 IGELLEKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V V +LGG L+I+W N ++M G A ++G + I Sbjct: 245 CDNVKVDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 284 >gi|154151970|ref|YP_001405588.1| diaminopimelate epimerase [Candidatus Methanoregula boonei 6A8] gi|154000522|gb|ABS56945.1| Diaminopimelate epimerase [Methanoregula boonei 6A8] Length = 275 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 21/283 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN ++ID A D I+ + D Sbjct: 3 IPFVKLHGNGNDFVLIDEYAQMIIPDDLKGQFAALYCERRFGIGADGILFLAKPTRK-AD 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDG---SIS 117 +RI+ D SE + CGNG+RC+ ++ +++ T +T G L +G +++ Sbjct: 62 IRMRILQPDESEAEMCGNGIRCLAKYAYDMGYIQETCTVQTEAGDLEVSVRYEGEECTVT 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + MGEP K IP + + V+ G PHA+ + DL Sbjct: 122 IGMGEPKFKRKDIPATGKGEY----------HEQIGGFEVHAVNTGVPHAVILTD-DLGS 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 DLA+ + HP F G N++ + T +S+ +RT+ERGV T +CG+ A AS Sbjct: 171 IDLAAVAPQIRNHPTFPHGANVNFVQKTGEDSIRVRTFERGVEDETLSCGTGATASAAVV 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L N V V+ GG L I + M G A + G + Sbjct: 231 HHLGYMNGPVQVETKGGPLTIHFDPEGKARMEGPAVAVFSGLI 273 >gi|118444379|ref|YP_878028.1| diaminopimelate epimerase [Clostridium novyi NT] gi|118134835|gb|ABK61879.1| diaminopimelate epimerase [Clostridium novyi NT] Length = 274 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 20/285 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF KM+G GN +VI+ D A D I+L+ A D Sbjct: 1 MDFTKMQGTGNDFVVIEDLYDDFKGKEDSLAKVLCHRRFGIGADGILLVRKSSVA--DIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV----AKENRDGSI--- 116 + IIN DGS CGNG+RC R++ + K E G + N + + Sbjct: 59 MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKPIIEIETGDGIKIAHLTINNEDEVLGI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +++MG + IPL+ + +++D +N+ + + + D+ Sbjct: 119 TINMGNFSFEPVDIPLSVNEKIINKDV----NINNKEYKITSMKLGVPHTVVMCNIHDVD 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G + K+ +FSEG N++ + +++ ++TWERG G T ACG+ +CASVVAS Sbjct: 175 VVE----GKYIEKYKLFSEGTNVNFCEIEDNDTIRVKTWERGAGPTLACGTGSCASVVAS 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V + GG L IE D+ VFMTG A+ +EGK+++ Sbjct: 231 NTLGYVGNKCKVIVPGGELFIELKDD-VVFMTGPAEIVFEGKINL 274 >gi|212640228|ref|YP_002316748.1| diaminopimelate epimerase [Anoxybacillus flavithermus WK1] gi|212561708|gb|ACJ34763.1| Diaminopimelate epimerase [Anoxybacillus flavithermus WK1] Length = 289 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 91/283 (32%), Positives = 139/283 (49%), Gaps = 19/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M + ++ A + D ++LI A V + Sbjct: 11 FTKMHGLGNSYIYVNMFKECLTEEELSYIAKRVSNVHTGIGSDGLILICPSDVAPV--KM 68 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE----NRDGSISV 118 RI N DGSE ++CGNG+RCV ++ + + F ET+ G++ A+ + S+ + Sbjct: 69 RIFNSDGSEGKNCGNGLRCVAKYAYEHGIVQEEQFLIETLSGLVEARVFVEDGKVNSVEI 128 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +MG+P L IP+ + D + + + VSMGNPHA+F+V+ + Sbjct: 129 NMGKPRLSRVEIPMIGKEDDIVVSEPIEFEGHTYYMTG----VSMGNPHAVFYVDQ-IED 183 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G ++ K F EG+N+ V + L R WERG G+T ACG+ ACA+VVAS Sbjct: 184 APVTSLGPIVEKDERFPEGINVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 243 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 KT N V + GG L I W +N V M G A+ G Sbjct: 244 LNGKTKRNEETVVHLAGGDLYITWKENGDVLMRGAAETICTGV 286 >gi|58428214|gb|AAW77251.1| Diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 346 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 122/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 68 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 127 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F + + G +V Sbjct: 128 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 187 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P D IPLA R H VSMGNPHA+ V + Sbjct: 188 AMGMPQFDPPQIPLAG----FAHARDEYALPVHGDTVRFGAVSMGNPHAVVEVGR-VDAA 242 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 243 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 302 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W D+ V M+G A ++G+ + Sbjct: 303 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWN 345 >gi|8247916|sp|O27389|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 286 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 124/284 (43%), Gaps = 11/284 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASV 60 M+ F+KM G+GN +VID ++ + + + T + D ++ + Sbjct: 1 MILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPA-SGEG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISV 118 D RI N DGSE + CGNG+RC +F+ + E GI + + V Sbjct: 60 DIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRRLEVETLAGIKTVELEVEDGAVV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + D + + +S+GNPHAI FV+ D Sbjct: 120 SSRVDMGTATFKTDQIPMDVEEYEFIDRFLPVEGEDIKLTALSVGNPHAIIFVD-DAEGV 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G + HP+F E +N+ V S + + TWERG G T ACG+ A ASV+A Sbjct: 179 DLDRLGPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGATASVIAGVK 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 L K + +V V + GG L I+ + + +M G+A ++G L Sbjct: 239 LEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGIL 282 >gi|25294019|pir||F84998 diaminopimelate epimerase (EC 5.1.1.7) [imported] - Buchnera sp. (strain APS) gi|10039244|dbj|BAB13278.1| diaminopimelate epimerase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 305 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 32 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 92 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + S + + F I +N + N +VS+GNPH I V+ + + + Sbjct: 152 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SVKNAPVNI 205 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 206 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305 >gi|239828210|ref|YP_002950834.1| diaminopimelate epimerase [Geobacillus sp. WCH70] gi|259595057|sp|C5D729|DAPF_GEOSW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|239808503|gb|ACS25568.1| diaminopimelate epimerase [Geobacillus sp. WCH70] Length = 284 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 95/283 (33%), Positives = 148/283 (52%), Gaps = 19/283 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++S A+ + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEETIPESLLSSLAVKVSNVNTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SISV 118 RI N DGSE ++CGNG+RCV ++ K +F ET+ G++ A+ + ++++ Sbjct: 64 RIFNSDGSEGKNCGNGLRCVAKYAYEHGMVKDRSFFIETLSGLVKAEVTVENGAVTNVTI 123 Query: 119 DMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+P L IP+ +++ + F + + VSMGNPH IF+V+ D+ Sbjct: 124 DMGKPRLKRSEIPMIGLDAERVVAEPFEVDGKQYEI----TAVSMGNPHVIFYVD-DITT 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ K F EGVN+ V + L R WERG G+T ACG+ ACA+VVAS Sbjct: 179 APVTTLGPIVEKDERFPEGVNVEFVEVVNDHELHFRVWERGSGVTQACGTGACAAVVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 KT N+ V + GG L+I W D +V MTG A+ G Sbjct: 239 LNGKTARNKETVVHLAGGDLIITWTDEGNVRMTGPAETICTGV 281 >gi|311086311|gb|ADP66393.1| diaminopimelate epimerase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086885|gb|ADP66966.1| diaminopimelate epimerase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087475|gb|ADP67555.1| diaminopimelate epimerase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 305 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 32 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 91 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 92 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 151 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + S + + F I +N + N +VS+GNPH I V+ + + + Sbjct: 152 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SIKNAPVNI 205 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 GN + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 206 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 265 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 266 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 305 >gi|167761628|ref|ZP_02433755.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704] gi|167660771|gb|EDS04901.1| hypothetical protein CLOSCI_04040 [Clostridium scindens ATCC 35704] Length = 285 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 15/284 (5%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 G+GN +V D +TS+ + + + D ++ ++++ N Sbjct: 8 YHGLGNDYVVFDPNKNELELTSENVRMICDRNEGLGSDGVL--EGPILKEDGMYVKVWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPIL 125 DGSE ++ GNG+R ++L + F+ G + + V MG+ Sbjct: 66 DGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEITFLNEDGSRLRVSMGKLSF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 126 WSDDIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F + +N I +V E + + +ERG G T A G+ ACA+ + L TN Sbjct: 181 YAELARYFPKRINTQIMKVIDKEHVAIEIYERGAGYTLASGTGACAAAGVAYKLGMTNNK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V V+M GG L +E ++ +VFMTG+ + L + ++++K Sbjct: 241 VIVQMPGGELQVEIEEDWNVFMTGDVFYVAKITL---SNEFVEK 281 >gi|297528903|ref|YP_003670178.1| diaminopimelate epimerase [Geobacillus sp. C56-T3] gi|297252155|gb|ADI25601.1| diaminopimelate epimerase [Geobacillus sp. C56-T3] Length = 290 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 145/292 (49%), Gaps = 25/292 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-----DDNTHFDQIMLIHDF 55 M+S F KM G+GN + +D+ + + + + A++ D ++LI Sbjct: 1 MRSF--SFTKMHGLGNSYIYVDLF--RETLPEEELPAIARSVADVHTGIGSDGLILICPS 56 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRD 113 + A +RI N DGSE ++CGNG+RCV ++ + TF ET+ G++ A+ Sbjct: 57 EKAP--LKMRIFNSDGSEGKNCGNGLRCVAKYAYEHGIVRDRTFLIETLSGLVEARVAVA 114 Query: 114 G----SISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 S++VDMGEP L+ IP+ +++ + F I + VSMGNPH I Sbjct: 115 DGEVTSVTVDMGEPRLERSAIPMVGPKAERVVAEPFAIAGGEYEM----TAVSMGNPHVI 170 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 F+V+ D+ + G L+ K F EGVN+ V + L R WERG G+T ACG+ Sbjct: 171 FYVD-DIQKAPVTMLGPLVEKDSRFPEGVNVEFVEVVNERELHFRVWERGSGVTQACGTG 229 Query: 229 ACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ACA+VVAS KT V + GG L I W + V MTG A+ G Sbjct: 230 ACAAVVASVLNGKTVRGEETVVHLAGGDLTIVWGHDGRVRMTGPAETVCTGV 281 >gi|229175640|ref|ZP_04303148.1| Diaminopimelate epimerase [Bacillus cereus MM3] gi|228607781|gb|EEK65095.1| Diaminopimelate epimerase [Bacillus cereus MM3] Length = 288 Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 92/287 (32%), Positives = 142/287 (49%), Gaps = 23/287 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 +R+ N DGSE +SCGNG+RCV ++ ++ F ET+ GI+ A+ + Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFKIETLAGIVTAEVTVEEGKVTLA 121 Query: 117 SVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +DMG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 122 KIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DV 176 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA Sbjct: 177 EQAPLTTLGPVLETHEMFPERVNVEFVEILNDAEMNFRVWERGSGVTQACGTGACAAVVA 236 Query: 236 SGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 S K R + V + GG L+I W + +V M G A+ G + Sbjct: 237 SILNGKMERGKEIIVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|302385678|ref|YP_003821500.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] gi|302196306|gb|ADL03877.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] Length = 270 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 19/281 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + I+ +S D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYINCFEEIVETPEKLAKKVSDRHFGIGSDGLILICPSETA--DCRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 R+ N DGSE Q CGNG+RCV +++ ++ F ET GI K + + +V + Sbjct: 59 RMFNADGSESQMCGNGIRCVGKYVYDHGLVEKTEFNVETGAGIKHLKVSTEDGKAVRITV 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + + + F+ +SMGNPHAI++++ + DL + Sbjct: 119 DMGVP-------EVTSQVPEPIWVNGMEYEFIG----ISMGNPHAIYYMDF-IDGLDLEA 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G H F E N +V + + +R WERG G T ACG+ A AS VAS +T Sbjct: 167 IGPAFEHHERFPERTNSEFIQVVNRNYIRMRVWERGSGETWACGTGAAASAVASALSGRT 226 Query: 243 NRAVSVKMLGGGLLIEWH--DNNHVFMTGEAKKEWEGKLDI 281 V V++ GG L I W + HVFMTG A + +EG+ DI Sbjct: 227 AHMVEVELKGGNLTIHWDREGSGHVFMTGPAVEVFEGEFDI 267 >gi|71274750|ref|ZP_00651038.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon] gi|170730008|ref|YP_001775441.1| diaminopimelate epimerase [Xylella fastidiosa M12] gi|229813256|sp|B0U6U5|DAPF_XYLFM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71164482|gb|EAO14196.1| Diaminopimelate epimerase [Xylella fastidiosa Dixon] gi|167964801|gb|ACA11811.1| Diaminopimelate epimerase [Xylella fastidiosa M12] Length = 284 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 126/278 (45%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDAALVAWLADRHFGIGCDQVIAIEPPRGVGVVAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV +L + F ++ + +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + + VSMGNPHA+ V+ + + Sbjct: 130 PVFEPERIPLSGFPNACAEYVLSLQG----EVLRCGAVSMGNPHAVVEVDL-IDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGPLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R V V + GG L ++W V ++G A+ ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPARCVFDGVW 282 >gi|196228840|ref|ZP_03127706.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428] gi|196227121|gb|EDY21625.1| Diaminopimelate epimerase [Chthoniobacter flavus Ellin428] Length = 267 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 28/283 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F KM G GN +++D R + I L D ++++ Q + Sbjct: 1 MLTFTKMNGAGNDFVMLDNRDGKLTLDKAQIARLCDRHRGVGADGVLVVEPAQS-GANFR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +R N DG E + CGNG RC RF + +FET+ G + A+ + Sbjct: 60 MRYYNADGGEAEMCGNGARCFGRFAQRVSGQAGDISFETMAGKITAQFIDNNV------- 112 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I ++ + G + V+ G PHA+ FV+ DL D+ Sbjct: 113 ------RIQMSEPHSLRLNESLDSGG----EVLTVHSVNTGVPHAVVFVD-DLEQVDVRR 161 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 FG L H F +G N + + +++ +RT+ERGV T ACG+ A + L Sbjct: 162 FGAGLRYHSHFAPKGTNANFVQQLGPQTIAIRTYERGVEDETLACGTGMVACALIFHELT 221 Query: 241 KTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGK 278 V+VK+ GG L I + + V+ +TG A ++G+ Sbjct: 222 GAASPVAVKVRGGETLEIAFRQDGKVYRDVTLTGPADFVFDGQ 264 >gi|289664014|ref|ZP_06485595.1| diaminopimelate epimerase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 284 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 87/283 (30%), Positives = 123/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I NCDGS + CGNG RCV +L + + F ++ + G +V Sbjct: 66 VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGGRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGIPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVIEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWN 283 >gi|219682484|ref|YP_002468868.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254767094|sp|B8D8A8|DAPF_BUCAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219622217|gb|ACL30373.1| diaminopimelate epimerase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 284 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 11 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + S + + F I +N + N +VS+GNPH I V+ + + + Sbjct: 131 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SIKNAPVNI 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 GN + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 185 IGNNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|148643432|ref|YP_001273945.1| diaminopimelate epimerase [Methanobrevibacter smithii ATCC 35061] gi|148552449|gb|ABQ87577.1| diaminopimelate epimerase, DapF [Methanobrevibacter smithii ATCC 35061] Length = 286 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 127/287 (44%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL----STDDNTHFDQIMLIHDFQDASVD 61 + F+KM GIGN +I+ +D A D ++ + A D Sbjct: 6 LKFSKMHGIGNDFPIINESAGEVIPEADKAEACRFLCHRHFGVGGDGVLFVTPSDVA--D 63 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS---- 115 R+ N DGSE + CGNG+RC F+ + K++ T ET GI + + Sbjct: 64 IGYRMFNPDGSEAEMCGNGIRCFGDFVYRKGILKQEKMTVETKSGIKTIEITLENDEPVL 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 VDMG IP+A D+ + N +S+GNPHAI FV+ ++ Sbjct: 124 FKVDMGTSTFKTPEIPMASDMDEFLDSPLEVLD----TTFNTTAISVGNPHAIIFVD-NI 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ +G + H +F E +N+ V S + TWERG G+T ACG+ A ++ ++ Sbjct: 179 DEIDIDKYGPAIETHEVFPEKINVHFVEVISKNEGKMLTWERGAGVTLACGTGATSTAIS 238 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 L + V + + GG L ++ FM G A+ ++G++ Sbjct: 239 GFKLGLFDSEVLLHLPGGDLKFNVYEKEEELGAFMEGPAQLVFDGEI 285 >gi|225619856|ref|YP_002721113.1| diaminopimelate epimerase [Brachyspira hyodysenteriae WA1] gi|259595051|sp|C0QZX1|DAPF_BRAHW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225214675|gb|ACN83409.1| Diaminopimelate epimerase [Brachyspira hyodysenteriae WA1] Length = 279 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN + I+ + DAI + D I+LI A D Sbjct: 3 LSFTKMHGTGNDYIYINCFKEKFTV-EDAIKYSPILSHRHYSIGADGIILIMPSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGS 115 +R+ N DGSE + CGNG+RCV ++ R K ET+RGIL A K+ + Sbjct: 60 VQMRMFNYDGSESEMCGNGIRCVAKYAYDRGISKNNPMKIETLRGILEAELFLKDEEVDT 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + M PIL+ IP + + + F VSMGNPHA+ FV +DL Sbjct: 120 VEISMSSPILEGLKIPTTIDKTPIINEPIIFNDKTYYF----TAVSMGNPHAVIFV-NDL 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ D++S G+ + + +F N+ + + + RTWERG G T ACG+ A A VA Sbjct: 175 HNMDISSIGSYMENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGASAVCVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T+ + +LGG L++ + +N++VFM GEA+ +EG + + Sbjct: 235 GFISGRTDNIILNHLLGGDLILRY-ENDNVFMKGEARYCFEGTITL 279 >gi|28952060|ref|NP_240392.2| diaminopimelate epimerase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11131717|sp|P57649|DAPF_BUCAI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase Length = 284 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 11 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + S + + F I +N + N +VS+GNPH I V+ + + + Sbjct: 131 PDFKFYNL---SSLQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SVKNAPVNI 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 185 IGDSIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|325922224|ref|ZP_08184010.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865] gi|325547294|gb|EGD18362.1| diaminopimelate epimerase [Xanthomonas gardneri ATCC 19865] Length = 283 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 124/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + + Sbjct: 6 RSERLRFTKMHGAGNDFVVLDLRDGTPPPDAALAARLADRHFGVGCDQILTIEAPRSSEA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F ++ + G+ +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQGDDFVIDSPFTAHRVQRLDAGTYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGVPHFEPTQIPLAG----FAHAREEYALPVHGETVRFGAVSMGNPHAVIEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGGLLQQNAAFPDSVNVGFVQVVEPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVRVSLPGGELRIRWAGDQQEVVMSGPAVFVFDGEWN 283 >gi|289667448|ref|ZP_06488523.1| diaminopimelate epimerase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 284 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 86/283 (30%), Positives = 122/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISV 118 A I NCDGS + CGNG RCV +L + + F ++ + +V Sbjct: 66 VAAYGIWNCDGSAARQCGNGARCVAAWLVRDGTAQGEHFIIDSPVTAHAVEHLDGDRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGIPQFEPTQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVIEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPNSVNVGFVQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W + V M+G A ++G+ + Sbjct: 241 RGRVERDVRVSLPGGELRIRWPGDHEQVVMSGPAVFVFDGEWN 283 >gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC 43243] gi|217991449|gb|EEC57455.1| hypothetical protein BACPEC_01964 [Bacteroides pectinophilus ATCC 43243] Length = 293 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 88/292 (30%), Positives = 129/292 (44%), Gaps = 22/292 (7%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN + +D +S D ++LI A D F+ + N Sbjct: 1 MHGAGNDYVYVDCTKTSIENAGAVAKFVSDRHFGIGSDGLILIKPSDKA--DFFMEMYNS 58 Query: 70 DGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDG------SISVDMG 121 DGS Q CGNG+RCV + +K +T+ GI + N D S+ V+MG Sbjct: 59 DGSRAQMCGNGIRCVAKYVYDYRLTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRVNMG 118 Query: 122 EPILDWKLIPL---ARSFDKMDRDRFHIGPVNHLFL-----RNPFVVSMGNPHAIFFVED 173 PIL IP+ + + + +D V+ VSMGNPH + F++D Sbjct: 119 SPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVVFMDD 178 Query: 174 DLY--HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 D ++ + G L H +F E N +V +L +R WERG G T ACG+ CA Sbjct: 179 DFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGTGCCA 238 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIK 282 S+VA+ + +LGG L I W+ N V+M G A ++G +DI Sbjct: 239 SLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDIDIS 290 >gi|323484135|ref|ZP_08089505.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum WAL-14163] gi|323693220|ref|ZP_08107438.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] gi|323402577|gb|EGA94905.1| hypothetical protein HMPREF9474_01256 [Clostridium symbiosum WAL-14163] gi|323502703|gb|EGB18547.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] Length = 269 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 73/278 (26%), Positives = 117/278 (42%), Gaps = 16/278 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ ++ S AI D ++LI + A D + Sbjct: 1 MKFTKMQGIGNDYVYVNCFEEKVEDPCSMAIAVSDRHFGIGSDGLILIKPSEVA--DCQM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DG+ CGNG+RCV ++ + + + Sbjct: 59 DMYNLDGTRGAMCGNGVRCVGKYAYDHKIVDKPRISVETASGIKYLDMKVENGKVTAVTV 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---LYHYDLA 181 K + + F++++ +SMGNPHA+ F ++ + DL Sbjct: 119 DMGKPVQTSELFEELEIK---------GKSYRFIGISMGNPHAVVFEDEFEEPIETLDLE 169 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G H F + N RV + +R WERG G T ACG+ ACA VA+ Sbjct: 170 KIGPDFENHERFPDRTNTEFIRVIDRGHVKMRVWERGSGETMACGTGACAVAVAAILAGC 229 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 T+ V V++LGG L I W + + V+MTG A + + G+ Sbjct: 230 TDDTVEVELLGGTLTIAWDREKDTVYMTGPAVEVFHGE 267 >gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836] Length = 279 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + ++ AI + + D ++LI +++ D + Sbjct: 4 LKFTKMHGAGNDYIYMNGFIQEIEDPSALAIRLSNRNFGIGSDGLVLILPSENS--DFRM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISV 118 ++ N DGSE + CGN RCV +++ +K ET G+ ++V Sbjct: 62 QMFNSDGSEAEMCGNASRCVGKYVYDNGLTTKKEIALETKAGVKYITLLEGDEKARKVTV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMGEPILD IP+ + + I + VSMGNPHA+ F + Sbjct: 122 DMGEPILDPVQIPVKVDKEPVLNFPLDIDGK----IWEISCVSMGNPHAVVFTTG-IKEL 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL G KHP+F N V ++L++R WERG G T ACG+ ACA+ VA+ Sbjct: 177 DLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAAVAAIL 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +++ ++GG L IEW + NNHV+MTGEA +EG++ Sbjct: 237 NGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEI 278 >gi|219681929|ref|YP_002468315.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471639|ref|ZP_05635638.1| diaminopimelate epimerase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254767093|sp|B8D8F1|DAPF_BUCA5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|219624772|gb|ACL30927.1| diaminopimelate epimerase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 284 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 10/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F+KM G+ N +VI+ + +TS I LS FDQ++L+ D Sbjct: 11 INFSKMHGLKNDFMVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHY 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N +G+EV+ CGNG RC FL + +K T + L + + I V+M E Sbjct: 71 RIFNANGNEVEQCGNGARCFGLFLLLKGLTNKKKILISTKKKPLTIEFLTENMIKVNMNE 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + S + + F I +N + N +VS+GNPH I V+ + + + Sbjct: 131 PDFKFYNL---SSLQNVLDNNFSIKLINENLICN--LVSIGNPHCIIKVQ-SIKNAPVNI 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+ + K+P+F EGVN+S + + + + LR +ER VG T ACGSAACA+V Sbjct: 185 IGDNIEKNPIFPEGVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLL 244 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 + V V++LGG L+I W ++M G AK ++G + I Sbjct: 245 SDTVHVELLGGKLIIIWKGFGTPLYMVGPAKHVYDGYIYI 284 >gi|190575910|ref|YP_001973755.1| diaminopimelate epimerase [Stenotrophomonas maltophilia K279a] gi|190013832|emb|CAQ47470.1| putative diaminopimelate epimerase [Stenotrophomonas maltophilia K279a] Length = 283 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 121/281 (43%), Gaps = 9/281 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F+KM G GN +VID+R T + L+ DQI+ I + Sbjct: 6 SKALRFSKMHGAGNDFVVIDLRDGTAPPTPELAAQLADRHTGVGCDQILTIEAPRAEGSV 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVD 119 A RI N DGS + CGNG RC+ +L + F ++ + DG +V Sbjct: 66 ASYRIWNADGSNSEQCGNGARCIAAWLVREGSAQGDRFVIDSPLASHEVEVLGDGQFAVT 125 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + +PL + + + F VSMGNPHA+ V + Sbjct: 126 MGVPAFEPANVPLVGFAHAREEYLLPLQGESVRF----AAVSMGNPHAVIEVGL-IDAAP 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G LL +H F VN+ A+V LR ERGVG T ACGS ACA+ V Sbjct: 181 VERVGALLQQHASFPRSVNVGFAQVMGPGHARLRVNERGVGETLACGSGACAAAVTLMQR 240 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 + R + + GG L I+W + V M G +EG+ Sbjct: 241 GRLQRDARISLPGGDLRIQWPGDGQPVVMAGPTAFVFEGEW 281 >gi|224370826|ref|YP_002604990.1| DapF [Desulfobacterium autotrophicum HRM2] gi|259595052|sp|C0QAP3|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2] Length = 283 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 136/288 (47%), Gaps = 19/288 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F KMEG+GN +++D R A S +I + D Sbjct: 3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGG--DGIIIIIDSETAD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115 +I N DGSE + CGNGMRC + + + ++ FT ET+ G ++ + + Sbjct: 61 VGFKIFNPDGSEPEMCGNGMRCFAKLVFEQGIVTKQRFTVETLAGTIIPEILLSDTRQVE 120 Query: 116 -ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I VDMGEPIL+ IP + + ++ + + VSMGNPHA+ FV+ D Sbjct: 121 AICVDMGEPILEPDRIPFKCNRQRAVNEQIQVKG----ETVSITAVSMGNPHAVIFVD-D 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL + G + H +F N+ V + + L +R WERG G T ACG+ A A +V Sbjct: 176 VKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGASAVLV 235 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A+ T V + GG L I W +NH+F TG A + G++ I Sbjct: 236 AASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRIKI 283 >gi|147919801|ref|YP_686453.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I] gi|121685385|sp|Q0W3B6|DAPF_UNCMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110621849|emb|CAJ37127.1| diaminopimelate epimerase [uncultured methanogenic archaeon RC-I] Length = 280 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 79/289 (27%), Positives = 124/289 (42%), Gaps = 24/289 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASV 60 + + F KM G GN +VID A D ++ + Sbjct: 2 TKIKFTKMHGNGNDFIVIDEFENPVPEEKKAAFAKKVCHRRFGIGADGVLFLAKPLH--T 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAK---ENRDGS 115 +RI N DGSE + CGNG+RC V++ ET GIL + E+ Sbjct: 60 SLHMRIFNEDGSEAEMCGNGIRCFVKYAVDNGHMNPGKDKVETKAGILEVEARIEDGKTL 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + V MG+P+ D K IP A + +++ L V+ G PHA+ FV+ D+ Sbjct: 120 VKVSMGKPLFDPKKIPAAGLNNFINKP---------LHGYEVTAVNTGVPHAVIFVD-DV 169 Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233 DL + F +G+N++ + L +RT+ERGV T +CG+ + AS Sbjct: 170 NAVDLMKVAPEIRYDLKTFPKGINVNFVQREGHN-LRVRTYERGVEGETLSCGTGSVASA 228 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L T +V GG L I + + +M G A+ +EG++D+ Sbjct: 229 AVARYLGYTRDETTVYTAGGQLNISFVSD-IAYMEGPAETVYEGEIDVD 276 >gi|225570788|ref|ZP_03779811.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM 15053] gi|225160250|gb|EEG72869.1| hypothetical protein CLOHYLEM_06891 [Clostridium hylemonae DSM 15053] Length = 290 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 17/296 (5%) Query: 1 MQSSMVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD 57 M+ + + + G+GN +V D +T + + + + D ++ Sbjct: 1 MEVTKMKVVLERYHGLGNDYVVFDPNKNELGLTPENVRMICDRNAGLGSDGVL--EGPVM 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG--- 114 F+++ N DGSE ++ GNG+R ++L + F + Sbjct: 59 KEEGMFVKVWNPDGSESETSGNGVRIFAKYLKDAGYVQKKHFRLFTEHGPVEVAFLNEDG 118 Query: 115 -SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V MG+ IP+ ++ + G L V++GNPH + + Sbjct: 119 SRLRVSMGKLSFYSDDIPVTGERREVINEDMVFG----RTLYPVTCVTIGNPHCVIPMR- 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 ++ + G+ F +N I +V E++ + +ERG G T A G+ ACA+ Sbjct: 174 EISKPLVCKIGDYAEIARYFPNRINTQIMQVIDKENIAIEIYERGAGYTLASGTGACAAA 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + L TN V V M GG L +E D+ +V+MTG+ + L + ++++K Sbjct: 234 GVAYKLGMTNNKVIVHMPGGELQVEVEDDWNVYMTGDVFYVAKITL---SNEFVEK 286 >gi|182417996|ref|ZP_02949303.1| diaminopimelate epimerase [Clostridium butyricum 5521] gi|237668975|ref|ZP_04528959.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378167|gb|EDT75702.1| diaminopimelate epimerase [Clostridium butyricum 5521] gi|237657323|gb|EEP54879.1| diaminopimelate epimerase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 275 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 127/282 (45%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ N S A+ D ++++ Q A A + Sbjct: 1 MKFYKMQGAGNDFVFVEDFNNEINDECSLAVKLCDRHYGIGADGLVIVRKSQVAE--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 IIN DGS CGN +RC +++ F G V ++ + + V Sbjct: 59 IIINADGSRANMCGNAIRCFGKYVFEHNIVNKTEFSVETGDGVKIIEVLLEDEKIKYVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + IPL+ D +D + G V +G PH I F D Y Sbjct: 119 YMGKPSYRAEDIPLSHGEDFIDSEITCNGK-----TYKATTVLVGVPHTIIFENTD--EY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G L KH +F+EG N++ ++ + + TWERG G T ACG+ ASVV + Sbjct: 172 VVNEDGPSLEKHSLFTEGSNINFVKIIDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231 Query: 239 LHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L N + + VK GG L+IE + ++ V+M G A+ +EG Sbjct: 232 LGLVNKEKEIYVKAPGGELIIEVNGDD-VYMKGPAEVVFEGN 272 >gi|222087520|ref|YP_002546057.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84] gi|254767086|sp|B9JCL3|DAPF_AGRRK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221724968|gb|ACM28124.1| diaminopimelate epimerase protein [Agrobacterium radiobacter K84] Length = 301 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 148/298 (49%), Positives = 196/298 (65%), Gaps = 5/298 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 SNTVEFARMNGLGNKILVVDMRGRKDVVTAAAAIALNADPATEFDQIMAIHDPKAEGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I I+N DG++ Q+CGNG RCVV+ L + +K FTF+T+ GIL A E+ DG+ISVDMG Sbjct: 62 WIDILNSDGTKAQACGNGTRCVVQALAAETGKKVFTFQTVAGILNAVEHEDGTISVDMGR 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ DW IPLA F R IGP+++ L +P V+SMGNPHAIF+V+ D YDLA Sbjct: 122 PVFDWDKIPLAEEFADTRRIELQIGPIDNPVLHSPSVMSMGNPHAIFWVDKDPMSYDLAR 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 FG LL HPMF E N+++A+V S L RTWERG GLT ACGSAAC++ V++ +T Sbjct: 182 FGPLLENHPMFPERANITLAQVLSPTLLRTRTWERGAGLTLACGSAACSAAVSAARTGRT 241 Query: 243 NRAVSVKM----LGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 R V++ + G L IEW + ++HV MTG A+ EW G +D TG + + E Sbjct: 242 GRKVTIDVASAPASGQLTIEWRENDDHVVMTGPAEWEWSGVVDPVTGSFTRAQEQGAQ 299 >gi|15838082|ref|NP_298770.1| diaminopimelate epimerase [Xylella fastidiosa 9a5c] gi|21362498|sp|Q9PD98|DAPF_XYLFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|9106505|gb|AAF84290.1|AE003977_13 diaminopimelate epimerase [Xylella fastidiosa 9a5c] Length = 284 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 82/278 (29%), Positives = 127/278 (45%), Gaps = 9/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D+R + L+ DQ++ I + V A Sbjct: 10 LHFTKMQGAGNDFVVLDLRDGTPPPDVALVAWLADRHFGIGCDQVIAIEPPRGVGVFAAY 69 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGS Q CGNG RCV + + + F ++ + + +V+MG Sbjct: 70 RIWNADGSAAQQCGNGARCVAAWLVRDGSVADEHFLIDSPVQAHLVRCIGKDEYAVEMGL 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P+ + + IPL+ + + + VSMGNPHA+ V+ + + Sbjct: 130 PVFEPERIPLSGFPNACGEYVLSLQG----EVLRCGAVSMGNPHAVVEVDL-IDVAPVER 184 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G+LL +H F E VN+ +V + LR +ERG G T ACGS ACA+ V + Sbjct: 185 IGSLLQQHVAFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRV 244 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 R V V + GG L ++W V ++G AK ++G Sbjct: 245 GRDVRVVLPGGTLRVQWPVSGGPVTLSGPAKCVFDGVW 282 >gi|190894039|ref|YP_001984333.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT 652] gi|190699700|gb|ACE93783.1| putative diaminopimelate epimerase protein [Rhizobium etli CIAT 652] Length = 283 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 13/280 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDAS----VD 61 F KM G+ N +++D R + + I + +Q++ I D Sbjct: 6 PFIKMHGLHNYFVIVDRRDGSKSFDREDIVRICDCHTGPGGEQLLTIEPASDKGRNVGAY 65 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +RI N DG EV +CGN RC+ L ET G+L + ISV G Sbjct: 66 AAMRIFNIDGKEVGACGNATRCIAYLLLEETGEDEVQIETKAGVLHCRRAGPMQISVTFG 125 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +DW+ IPL+R D + PV L++ + +GNPHA+FFV+ L +D+A Sbjct: 126 PISMDWRRIPLSREVDTL------HLPVQSGPLKDGLALDIGNPHAVFFVDC-LELFDMA 178 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 ++ P+F EG+N+ A V +L L WER LT ACG+ AC + A+ Sbjct: 179 HHAPVVQNDPLFPEGINVDAAEVLDGRTLRLAVWERPGILTKACGTGACVAAYAALKRGL 238 Query: 242 -TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T+ ++V + G L IE + + MTG G ++ Sbjct: 239 VTSTRIAVHLPAGLLKIEIANGDMAVMTGPVAFCCHGFIE 278 >gi|188996119|ref|YP_001930370.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931186|gb|ACD65816.1| Diaminopimelate epimerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 286 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 16/281 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +V+D +T I + D I++ + D +RI Sbjct: 7 FVKSHGLGNDYIVLDSDKIDFKLTQGLIKKICDVHYGIGSDGILV--KYDSDVADFKLRI 64 Query: 67 INCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDG------SISV 118 N DGSE + GNG+R + + + FT ET GI+ AK I+V Sbjct: 65 FNPDGSEAEKSGNGLRIFCKFLYDYGYTDNEEFTVETKGGIVKAKIEEKNKFGKAKIITV 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ I + K IP+ ++ ++ +G VS+GNPH + +++L Sbjct: 125 DMGKAIFNAKQIPINTDKEEFISEKITVGDKEFEVN----CVSVGNPHCVII-KENLDEE 179 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ +G ++ HP+F +N+ + S + WERG G T A GS++C Sbjct: 180 EIKKYGPMIENHPLFPNRINVQFVKPISRNEAQILIWERGAGFTYASGSSSCGVASVLVK 239 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +R + +KM+GG L I ++ ++ MTGE ++ G + Sbjct: 240 KGLADREIKIKMIGGELKISIDEDWNIKMTGEVQEICSGYI 280 >gi|168186174|ref|ZP_02620809.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund] gi|169295648|gb|EDS77781.1| diaminopimelate epimerase [Clostridium botulinum C str. Eklund] Length = 274 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 20/285 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD--AINALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF KM+G GN +VI+ + A N D I+L+ A D Sbjct: 1 MDFTKMQGTGNDFVVIEDLYDDFKGKEETLAKNLCHRKFGIGADGILLVRKSSVA--DIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV----AKENRDGSI--- 116 + IIN DGS CGNG+RC R++ + K E G + N D + Sbjct: 59 MDIINADGSYAAMCGNGIRCFARYVYDKNIVKKSIIEIETGDGIKIAYLTINNDDEVLGI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +++MG K IPL+ + +K+ +I + V + DD+ Sbjct: 119 TINMGNFSFQPKDIPLSIN-EKIINKDININSTEYKITSMKLGV---PHTIVMCNIDDVD 174 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + G + KH +FSEG N++ V ++ ++TWERG G T ACG+ +CASVVAS Sbjct: 175 V----TEGKYIEKHELFSEGTNVNFCEVKDNNTISVKTWERGAGPTLACGTGSCASVVAS 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L V + GG L IE + VFMTG A+ +EGK++I Sbjct: 231 NTLGYIGNRCKVIVPGGELFIEVKGD-IVFMTGPAEIVFEGKINI 274 >gi|254249624|ref|ZP_04942944.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] gi|124876125|gb|EAY66115.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184] Length = 295 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + + D + + F+Q+ +I Sbjct: 29 IAFQKMNANGDDFVIVDLRGQEHDRAHPVDDDLVRRMGDRHRGIGFNQLAVI--SDGDDA 86 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 87 AARVAFRNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 146 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P LDW+ +P++ + D + P SMGNPH FFV+ D+ D+ Sbjct: 147 GAPRLDWQDVPVSEAVDTLVL----------PLPGAPAACSMGNPHCTFFVD-DVAALDI 195 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 196 EALGPAIEAHPLFPLKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 255 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG + ++W VF++G + G Sbjct: 256 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFGGVW 294 >gi|84625424|ref|YP_452796.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161898962|ref|YP_202636.2| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae KACC10331] gi|123520881|sp|Q2NYV5|DAPF_XANOM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|84369364|dbj|BAE70522.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 284 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 122/283 (43%), Gaps = 9/283 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV 60 +S + F KM G GN +V+D+R + L+ DQI+ I + Sbjct: 6 RSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGA 65 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISV 118 A I N DGS + CGNG RCV +L + F + + G +V Sbjct: 66 VAAYGIWNSDGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAV 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P D IPLA R H VSMGNPHA+ V + Sbjct: 126 AMGMPQFDPPQIPLAG----FAHARDEYALPVHGDTVRFGAVSMGNPHAVVEVGR-VDAA 180 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G LL ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V Sbjct: 181 PVERVGTLLQQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQ 240 Query: 239 LHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + R V V + GG L I W D+ V M+G A ++G+ + Sbjct: 241 RCRVERDVQVSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWN 283 >gi|281422920|ref|ZP_06253919.1| diaminopimelate epimerase [Prevotella copri DSM 18205] gi|281403012|gb|EFB33692.1| diaminopimelate epimerase [Prevotella copri DSM 18205] Length = 281 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 86/281 (30%), Positives = 137/281 (48%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS-VDAF 63 V F KM+G GN + +D + + AI + D ++LI D D Sbjct: 7 VHFTKMQGAGNDYIYVDTQQYDIPDPEKAAIAWSAYHTGIGSDGLVLIGKPHDGRRADYS 66 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMG 121 +RI N DGSE CGN RC+ ++L + + T ET+ GI + K + + V Sbjct: 67 MRIFNADGSEAMMCGNASRCIGKYLYEKGLTRKDTIRLETLSGIKILKLHLQDNKEVVKS 126 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + L + ++ V MGNPH + FV+ D+ D+A Sbjct: 127 VTVDM-----LEPKLENPEQFIGPSVLEADGRKFEGTYVCMGNPHFVTFVD-DIDTIDIA 180 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +G +L + F + N+ A+VT + + R WERG G+T ACG+ ACA+ VA+ ++ Sbjct: 181 HYGKILERDKAFPQRCNIEFAQVTDTDIIRTRVWERGSGITMACGTGACATAVAAALTNR 240 Query: 242 TNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 T R S+ M GG L IE+ + ++HV+MTG A +EG++++ Sbjct: 241 TGRKSSIVMDGGTLEIEYSEADDHVYMTGPAAFAFEGEIEL 281 >gi|299534479|ref|ZP_07047812.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1] gi|298730107|gb|EFI70649.1| diaminopimelate epimerase [Lysinibacillus fusiformis ZC1] Length = 284 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 143/286 (50%), Gaps = 18/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM GIGN + +D+ D A + D +++I + A D Sbjct: 3 IAFTKMHGIGNSYIYLDLFQHNYKEDIFCELAQKMANVHTGIGSDGLIIIQPSKIA--DC 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGIL----VAKENRDGSI 116 +R+ N DGSE +CGNG+RCV +++ R + T ET GI+ V ++NR + Sbjct: 61 GMRVFNKDGSEGTNCGNGLRCVAKYVFERHIVRQELITIETKSGIMLAQVVVQDNRVIEV 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDMG+P+L K IP+ + +++ + P L + + +GNP+A+FFV + Sbjct: 121 IVDMGKPLLLRKDIPMLGNPNELVINEIFPLPQQSLLV---TALFLGNPNAVFFVNA-IE 176 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + G++ F N+ + ++L WERG G+T ACG+ ACA+VVA+ Sbjct: 177 QAPLRTLGDIA-NDIRFPYRCNVEFVEIVHEKALKCCVWERGSGITEACGTGACAAVVAA 235 Query: 237 GCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V++ GG L+I W DN+H++M G A+ +G + Sbjct: 236 ILNGFCQKGEEIVVQLSGGDLVIRWADNDHIWMRGPAEFIADGIYE 281 >gi|323137808|ref|ZP_08072883.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242] gi|322396811|gb|EFX99337.1| diaminopimelate epimerase [Methylocystis sp. ATCC 49242] Length = 286 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 106/266 (39%), Positives = 144/266 (54%), Gaps = 5/266 (1%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN+ILV+D+RG + A++ FDQ+M +HD ++ DAF+RI N D Sbjct: 13 MNGAGNEILVLDLRGLDHVLAPQEARAIAAAPGLRFDQLMALHDPREKGDDAFMRIYNVD 72 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS +CGNG RCV L K + T + + + +VDMG P LDW+ I Sbjct: 73 GSLSGACGNGARCVAYALARDGKER-LRLATDAARIETRREAETVFTVDMGRPRLDWREI 131 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 PL+R D + P VSMGNPHA+FFV D L + G L H Sbjct: 132 PLSREADTR---TVALEPPVAGAPTQFSAVSMGNPHAVFFV-PDALATPLETLGPKLEHH 187 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F + N+S A++ + + LR WERG G T ACGSAACA++VA+ T R V++ Sbjct: 188 PLFPQRANISFAQIVARYDILLRVWERGTGATKACGSAACATLVAAARAGFTERRARVRL 247 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWE 276 GG L IEW D++HV MTG + E+E Sbjct: 248 PGGDLHIEWRDDDHVMMTGPVEFEFE 273 >gi|118366209|ref|XP_001016323.1| diaminopimelate epimerase family protein [Tetrahymena thermophila] gi|89298090|gb|EAR96078.1| diaminopimelate epimerase family protein [Tetrahymena thermophila SB210] Length = 310 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 32/306 (10%) Query: 5 MV-DFAKMEGIGNKILVIDMR-------GCHDNITSDAINALSTDDNTHFDQIMLIHDFQ 56 M+ F K G+GN ++ID R G D + D +M + + Sbjct: 1 MILHFDKFHGLGNDFIIIDNRQNLLNTCGNPDEFSKIIAKLCDRHLGIGADGVMFVENES 60 Query: 57 DAS------VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV 107 + D +I N DG E Q CGNG+RC R++ + +K T G+L Sbjct: 61 EKDKQDGIQADIRYKIFNADGYESQICGNGLRCFTRYILEKKIIQNKKIVQIRTNIGVLE 120 Query: 108 AKENRDGSISVDMGEPILDWKLIP------------LARSFDKMDRDRFHIGPVNHLFLR 155 +E G ++G+ + IP + + Sbjct: 121 CEELSLGLYRTNIGKATAEISKIPANPFNSDAESVVINQPLKINQNLHQQNLSHLSEETH 180 Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRT 214 V++GNPH + +V+ D+ ++ G L +F + VN+ ++ +L +R Sbjct: 181 YVTFVNVGNPHCVIYVD-DVETAEVERIGKTLQSRKDIFPQSVNVEFIQILDENTLKMRV 239 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKK 273 +ERG G T ACG+ ACASV A K + + V + GG L I + ++ + + G A K Sbjct: 240 YERGCGETMACGTGACASVFAGILNKKNSPSSKVLLRGGELQINVNQEDYSLQVIGPAAK 299 Query: 274 EWEGKL 279 +EG + Sbjct: 300 VFEGSI 305 >gi|284047714|ref|YP_003398053.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731] gi|283951935|gb|ADB46738.1| diaminopimelate epimerase [Acidaminococcus fermentans DSM 20731] Length = 296 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 124/281 (44%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D +S D ++ I A D + Sbjct: 3 MKFTKMHGCGNDYVYVDCMDRMLPNPGKISEFVSRRRFGIGSDGLICICPSDKA--DFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRG----ILVAKENRDGSISV 118 R+ N D SE + CGNG RC+ +++ + ++ + T ET+ G + ++ + V Sbjct: 61 RMFNADASEGKMCGNGSRCIAKYVYDKGLTRKDTITLETLGGIKTIHMTVEQGKVVLAEV 120 Query: 119 DMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 DMG+ ++ +P+ + +D+ GP F VSMGNPH + FVE D+ Sbjct: 121 DMGQAVVRTADVPMDWPEETCVDQPVVFAGPDGKGFTVRGTAVSMGNPHFVTFVE-DVET 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + G ++ P+F E N+ ++ + R WERG G T ACG+ ACA Sbjct: 180 APVEAVGRIIETSPVFPERTNVEFVQIVDENHVKFRVWERGSGETWACGTGACAVGYTCV 239 Query: 238 CLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 L K + + V+ GG L + + + + + G A + Sbjct: 240 TLGKAGKRGEFLKVEAKGGMLQVRTGEGDAMTLKGPATTVY 280 >gi|258511860|ref|YP_003185294.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478586|gb|ACV58905.1| diaminopimelate epimerase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 278 Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 125/278 (44%), Gaps = 8/278 (2%) Query: 6 VDFAKMEGIGNKILVID-MRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM +GN + +D R D++ S A D ++L+ A D Sbjct: 1 MQFFKMHALGNNYVFVDTARTTLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE +SCGNG+RCV R+ R + F V + + Sbjct: 59 GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVEGRVRL 118 Query: 123 PILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFVEDDLYHYDL 180 +D + DR V R +VSMGNPH + V+ + D+ Sbjct: 119 VTIDMGEARFGTEAVPYRGADRGEDVRVEAGGARYTGTLVSMGNPHFVTLVDR-VDDVDV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ HP F E VN+ V + + +D R +ERG G+T ACG+ ACASV A Sbjct: 178 ERVGRVIESHPDFPERVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAALAKKG 237 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 V+V +LGG L IE D+ HV+MTGEA EG Sbjct: 238 LVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGT 275 >gi|83944909|ref|ZP_00957275.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633] gi|83851691|gb|EAP89546.1| diaminopimelate epimerase [Oceanicaulis alexandrii HTCC2633] Length = 268 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 94/274 (34%), Positives = 135/274 (49%), Gaps = 10/274 (3%) Query: 11 MEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M G GN +V+D R I AL FDQ++++ DA D +R+ N Sbjct: 1 MNGAGNAFIVLDRRDASGPAAYGESGIAALLDVH--PFDQLIVLDPSSDADAD--LRVWN 56 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG EV +CGNG R L + +F + G + A+ DG+ VD+G LDW+ Sbjct: 57 RDGGEVGACGNGTRAAAWLLFEDGAKPQLSFTSSGGPMRAQRLSDGAAEVDLGPARLDWR 116 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL+ D M D P + L P VSMGNPH +F V+ D+ LA G + Sbjct: 117 DIPLSLPMDTMRLDFGVNLP-DGGRLEGPGAVSMGNPHVVFAVD-DVLALPLAEIGPCIE 174 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 P+F + VN A+V + + L+ +ERG GLT ACG+ ACA++VA NR + Sbjct: 175 HDPLFPDRVNAGFAQVRDRDDIRLKVFERGAGLTLACGTGACAALVALHRQGLVNREAVI 234 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + GG L + W HV ++G E +LD++ Sbjct: 235 EADGGKLPVRWDTEGHVHLSGPVVL--ERELDLR 266 >gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 284 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 129/301 (42%), Gaps = 44/301 (14%) Query: 6 VDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD----- 57 ++F+K G+GN ++++ I D ++++ Sbjct: 1 MNFSKWTGLGNDFVLLEPGESLDFSSGFEQRIIKLCDRRFGIGADGVVVVTPMDGDGCLV 60 Query: 58 --------------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFT 98 VD +RI N DGSE CGN RCV +++ +R K F Sbjct: 61 LNGISEGPVSKAVANGVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFN 120 Query: 99 FETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158 T G++ DG + VDMG P I L + Sbjct: 121 LHTKSGLVRPALLDDGRVCVDMGLPRTFLGSIKLTADCYDFTAET--------------- 165 Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 VSMGNPHA+ FV+ D+ L ++G++L F + N+ A+V + + +R WERG Sbjct: 166 -VSMGNPHAVIFVD-DIEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRVWERG 223 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+T ACG+ +CA++VA+ + V + GG L I+ ++ V MTG A++ ++G Sbjct: 224 CGVTMACGTGSCATLVAAQRTGRVGVEADVILDGGTLHIKHEEDGPVLMTGPAQEVFKGT 283 Query: 279 L 279 + Sbjct: 284 I 284 >gi|239627681|ref|ZP_04670712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517827|gb|EEQ57693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 122/288 (42%), Gaps = 21/288 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + +D +S D ++LI D + Sbjct: 3 MKFTKMQGIGNDYVYVDCFKEQVKEPGKVSRFISDRHFGIGADGLILICPS--GKADCRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS+ CGNG+RCV ++ R++ T ET+ GI + +V Sbjct: 61 EMYNADGSQGTMCGNGVRCVGKYAYDHGLVPADRRTMTVETLGGIKTLELEVKDGKAVS- 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 I + + D V+ R + +GNPHA+++++ + DL Sbjct: 120 ---------ITVDMGEGTLTSDLPEDIQVDGKDYR-FVGIDVGNPHAVYYMDG-IDRLDL 168 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G H F + VN V + L++R WERG G T ACG+ A ASV+AS + Sbjct: 169 EKTGPAFEYHERFAPDRVNTEFIEVVDRKHLNMRVWERGSGETWACGTGATASVLASILM 228 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTGKW 286 + V + GG L+I +FMTG A + + G +DI + Sbjct: 229 GYVDDEAEVSLRGGKLMIRLDRATGRLFMTGPAVEVFNGSIDIPQEIY 276 >gi|228961188|ref|ZP_04122809.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153125|ref|ZP_04281304.1| Diaminopimelate epimerase [Bacillus cereus m1550] gi|228630224|gb|EEK86874.1| Diaminopimelate epimerase [Bacillus cereus m1550] gi|228798482|gb|EEM45474.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 280 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ V+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|229181234|ref|ZP_04308564.1| Diaminopimelate epimerase [Bacillus cereus 172560W] gi|228602127|gb|EEK59618.1| Diaminopimelate epimerase [Bacillus cereus 172560W] Length = 280 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|229193215|ref|ZP_04320166.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876] gi|228590192|gb|EEK48060.1| Diaminopimelate epimerase [Bacillus cereus ATCC 10876] Length = 280 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEAGVVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|330810926|ref|YP_004355388.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379034|gb|AEA70384.1| Diaminopimelate epimerase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 267 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 14/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+ +++D R + +TS + + F+Q+ ++ D DA DA + Sbjct: 3 LNFQKMHANGDDFVIVDSRNSANPVTSAMAQRMGDRNLGVGFNQLAVLLDCDDA--DARV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + CG+ R L S T RG+L + G ISVDMG P+ Sbjct: 61 MFWNADGSALDVCGSATRGAADMLMREANVASVALRTNRGLLTCERTSTGDISVDMGVPL 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W IPLA++ D +P SMGNPH +FV+ D D+A+ G Sbjct: 121 FGWSDIPLAQALDTAVL----------PLAGSPAACSMGNPHCTYFVD-DPATVDIATIG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + + +F N+ ++ + LR WERG G+ GS +C +VV +R Sbjct: 170 PAIETNALFPLRTNVHFVQIIDRTHIRLRIWERGAGVALGSGSCSCGAVVNGIRRGLLDR 229 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V+ GG + ++W VF+ G + + G + Sbjct: 230 TVEVECDGGSVTVQWDGVGAVFLIGPVEASFSGTM 264 >gi|229118409|ref|ZP_04247763.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3] gi|228664979|gb|EEL20467.1| Diaminopimelate epimerase [Bacillus cereus Rock1-3] Length = 280 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 19/282 (6%) Query: 11 MEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M ++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSI----SVDMG 121 N DGSE ++CGNG+RCV ++ + F ET+ GI+ A+ + + +DMG Sbjct: 59 NNDGSEGKNCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLVKIDMG 118 Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERANVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 234 KLERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|229048630|ref|ZP_04194188.1| Diaminopimelate epimerase [Bacillus cereus AH676] gi|228722749|gb|EEL74136.1| Diaminopimelate epimerase [Bacillus cereus AH676] Length = 280 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 19/282 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M A+ + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAGKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMG 121 N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ V+ D+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 234 KMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 246 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 120/249 (48%), Gaps = 9/249 (3%) Query: 36 NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--- 92 D ++ ++ D +RI N DGSE + CGNG+RC+ FL Sbjct: 2 EMCDRHFGIGADGVIFALPGEN-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLS 60 Query: 93 -KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151 + ++ T+ G++ + DG I VDMG P L IP D + Sbjct: 61 RNKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGA--ADGKVINQPLEVE 118 Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 VSMGNPH I FVE D+ L G HP F + N +V S + L Sbjct: 119 GQTWEVTCVSMGNPHCITFVE-DVAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLK 177 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGE 270 +R WERG G+T ACG+ ACAS+VA+ +++R +V++ GG L IEW + + ++MTG Sbjct: 178 MRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGP 237 Query: 271 AKKEWEGKL 279 A + + GKL Sbjct: 238 ADRVFTGKL 246 >gi|229062608|ref|ZP_04199918.1| Diaminopimelate epimerase [Bacillus cereus AH603] gi|228716711|gb|EEL68407.1| Diaminopimelate epimerase [Bacillus cereus AH603] Length = 280 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 142/282 (50%), Gaps = 19/282 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M AI + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMG 121 N DGSE +SCGNG+RCV ++ ++ K FT ET+ GI+ A+ + +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEGKVFTIETLAGIVTAEVTVEDDKVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L + IP+ + R+ F + F VSMGNPHA+ FV+ D+ L Sbjct: 119 APRLTREEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K + ++V + GG L+I W + +V M G A+ G + Sbjct: 234 KMEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEIICRGVYE 275 >gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286] Length = 280 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 83/278 (29%), Positives = 130/278 (46%), Gaps = 7/278 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + ++ N + A+ + D ++LI D + Sbjct: 4 LKFTKMQGAGNDYIYMNGFTQQIDNPSELAVRLSNRHFGIGSDGLVLILPSDI--CDFRM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 ++ N DGSE + CGN RCV +++ +K T ET G+ +I+ + Sbjct: 62 QMFNSDGSEAEMCGNASRCVGKYVYDNGLTDKKEITLETKAGVKYITLKDGDAIARKVTV 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + L P + + VSMGNPHA+ F++ + DL Sbjct: 122 DMGEPILAPTLIPVRVAEEPVLEYPLDIDGKIWKISCVSMGNPHAVVFMKG-IKDLDLPV 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +P+F N V +L++R WERG G T ACG+ ACA+ VA+ + Sbjct: 181 LGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACAAAVAAVLNNHC 240 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +R +++ +LGG L IEW NNHV+MTGEA +EG+L Sbjct: 241 DRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGEL 278 >gi|254467977|ref|ZP_05081383.1| diaminopimelate epimerase [beta proteobacterium KB13] gi|207086787|gb|EDZ64070.1| diaminopimelate epimerase [beta proteobacterium KB13] Length = 272 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 16/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV-DAF 63 + F KM+ IGN +VI+ +++ I L+ FDQ+++I + + D Sbjct: 3 IPFTKMQAIGNDFIVINQIDQVYDLSQAQIAKLADRHFGIGFDQLLIIEKSDNPTAFDYK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC ++ + T ET+ G + ++ + Sbjct: 63 YRIFNADGSEVEHCGNGARCFYEYIQHHKISSKNPITAETLNGSISLTKDDELIAVDMGT 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + F I + +GNPH +FFV+ + D Sbjct: 123 Y----------SIGMKNEPSLFFDIFSDKKTEEIQGIYIDVGNPHIVFFVD-SVKDVDAV 171 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + +F VN+ + + + L +ERG GLT CGS ACA+ +A+ L K Sbjct: 172 RTGKSIQGSSLFPHSVNVGFCEIINSNEIKLVVYERGSGLTLGCGSGACAASIAAIHLKK 231 Query: 242 TNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V V M GG + + +NH+ + G+A +EG +++ Sbjct: 232 VEGSLVKVNMPGGSIYTQAFADNHILLKGDASIVFEGIINL 272 >gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str. Marburg] gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str. Marburg] Length = 290 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 128/291 (43%), Gaps = 20/291 (6%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDA 58 + MV F+KM G+GN +VID ++ + + + T + D ++ + Sbjct: 2 TRMVMFSKMHGLGNDYVVIDESTQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPAA-G 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSI 116 D RI N DGSE + CGNG+RC +F+ + ET+ GI + Sbjct: 61 DGDIRFRIFNADGSEAEMCGNGIRCFSKFVYDNAIVRKRKLDVETLAGIKTVELEIGDDG 120 Query: 117 SVDMGEPIL-----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 SV + IP+ D + + +S+GNPHA+ FV Sbjct: 121 SVVSSRVDMGTATFKTDQIPM----DVGECEFIDRFLPVEGEDIKLTALSVGNPHAVIFV 176 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + D DL G + HP+F E +N+ V + + TWERG G T ACG+ A A Sbjct: 177 D-DTGSVDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGTGATA 235 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL 279 SV+A L K + +V V + GG L I+ + +M G+A ++G L Sbjct: 236 SVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDGIL 286 >gi|296127364|ref|YP_003634616.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563] gi|296019180|gb|ADG72417.1| diaminopimelate epimerase [Brachyspira murdochii DSM 12563] Length = 279 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 17/286 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVD 61 +++F KM GIGN + +D + + D I+LI A D Sbjct: 2 ILNFTKMHGIGNDYIYVDCFKEKFTVEDAMKYSPILSHRHYSIGADGIILIMPSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAK----ENRDGS 115 +R+ N DGSE + CGNG+RCV ++ + K ET+RGIL AK +N S Sbjct: 60 VQMRMFNYDGSESEMCGNGIRCVAKYAYDKGISKNNPMKIETLRGILDAKLFIKDNEADS 119 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + ++M PIL+ IP + + + + F VSMGNPH + FV+ D+ Sbjct: 120 VEINMDSPILEGLKIPTTIDKNVIIDEPITFNGKTYYF----TCVSMGNPHTVIFVD-DV 174 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + D+A GN + + +F N+ V + + RTWERG G T ACG+ A A VA Sbjct: 175 SNMDIADIGNYIENNTIFPNRTNVEFVEVINRGEVKQRTWERGSGETLACGTGASAVCVA 234 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T+ + +LGG L++ + +NN VFM GEA+ +EG + + Sbjct: 235 GFISKRTDNIILNHLLGGDLILRY-ENNSVFMRGEARYSFEGSVKL 279 >gi|225848781|ref|YP_002728945.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644616|gb|ACN99666.1| diaminopimelate epimerase [Sulfurihydrogenibium azorense Az-Fu1] Length = 288 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 137/291 (47%), Gaps = 19/291 (6%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN +VID IT D I + D I++ + + D +RI Sbjct: 6 FVKSHGLGNDYIVIDSENITFEITQDFIKKICDVHYGIGSDGILV--KYPSSVADFKLRI 63 Query: 67 INCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGS------ISV 118 N DGSE + GNG+R + + ++ FT ET G++ AK I+V Sbjct: 64 FNPDGSEAEKSGNGLRIFCKFLYDYGYTNKEEFTVETKGGLVRAKIEEKNKFGKAKVITV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ I + IP+ + ++ +G + VS+GNPH + + +L Sbjct: 124 DMGKAIFEASKIPVKTDKKEFLGEKVKVGDKEYEVN----CVSVGNPHCVIIKK-ELNEE 178 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ ++G+L+ HP+F +N+ + S + ++ WERG G T A GS++CA Sbjct: 179 EIKTYGSLIENHPLFPNRINVQFVKPISEDQAEILIWERGAGFTYASGSSSCAVASVLVK 238 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 +++KM+GG L I + ++ MTGE ++ G + + ++++ Sbjct: 239 KGLAKNDITIKMIGGELKITVDKDWNIRMTGEVQEICRGII---SEEFLES 286 >gi|313904541|ref|ZP_07837917.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6] gi|313470683|gb|EFR66009.1| diaminopimelate epimerase [Eubacterium cellulosolvens 6] Length = 300 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 31/301 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + ++ + +I D ++L+ + A D + Sbjct: 1 MKFTKMHGCGNDYVYVNCFEEKVFEPSEVSIKVSDRHKGIGSDGLILVKPSKVA--DCEM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDG----SISV 118 I N DGS+ + CGNG+RCV +F+ + + T +T G+ G + V Sbjct: 59 DIYNADGSQAKMCGNGIRCVAKFVYDKGIVPKTHMTIDTQSGVKTLDLTIVGGKCKKVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------ 172 +MG+ + +P+ + + VSMGNPHA+ F + Sbjct: 119 NMGKAEIVASKVPVIADTELAVGAPITVKDQ----AFTYTAVSMGNPHAVVFTDENPALA 174 Query: 173 ---------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 +DL + G HP F + +N V ++++R WERG G T Sbjct: 175 NAGYGSMTGEDLSTLKIEEIGPDFEFHPNFPDRINTEFIHVLDSNTIEMRVWERGSGETM 234 Query: 224 ACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 ACG+ ACA+ VAS K R V+VK+LGG L+IEW + N V+MTG A +EG+LD Sbjct: 235 ACGTGACAAAVASILNRKVERGKPVTVKLLGGDLVIEWDEKENTVYMTGPATTVFEGELD 294 Query: 281 I 281 + Sbjct: 295 L 295 >gi|229076315|ref|ZP_04209280.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18] gi|228706750|gb|EEL58958.1| Diaminopimelate epimerase [Bacillus cereus Rock4-18] Length = 280 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 89/282 (31%), Positives = 140/282 (49%), Gaps = 19/282 (6%) Query: 11 MEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 M G+GN + ++M ++ A + + D ++LI A V +R+ Sbjct: 1 MHGLGNSYIYVNMFEEQILEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMF 58 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSI----SVDMG 121 N DGSE +SCGNG+RCV ++ + F ET+ GI+ A+ + + +DMG Sbjct: 59 NNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFAIETLAGIVTAEVTVEDGVVTLAKIDMG 118 Query: 122 EPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ L Sbjct: 119 APRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 174 TTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNG 233 Query: 241 KT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K + ++V + GG L+I W + +V M G A+ G + Sbjct: 234 KLEHGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|228942106|ref|ZP_04104646.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981675|ref|ZP_04141970.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407] gi|228777787|gb|EEM26059.1| Diaminopimelate epimerase [Bacillus thuringiensis Bt407] gi|228817440|gb|EEM63525.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 280 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FVE D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|302385663|ref|YP_003821485.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] gi|302196291|gb|ADL03862.1| diaminopimelate epimerase [Clostridium saccharolyticum WM1] Length = 286 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + K G+GN L+ D +T ++I + D +++ + Sbjct: 3 ITLEKYHGLGNDYLIFDPNKNELKLTEESIRLICNRNFGVGSDGLLV--GPVLGQDKLEV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG--SISVDM 120 +I+N DGSE + GNG+R ++ +++ F T+ G + + I V M Sbjct: 61 KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNRFIVNTLSGQQTIQYLNEDGTRIKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ IP+ ++ + G + + VS+GNPH + ++ +D+ Sbjct: 121 GKLSFYSDEIPVTGPRREVLNETMMFGSIPYR----VTCVSIGNPHCVIWL-NDISKDLA 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G F E +N + +V ++++ +ERG G T A G++ CA+ A+ + Sbjct: 176 CRIGKHSETADYFPEKINTELLKVLDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYRMG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T+ + V M GG L +E + V MTGE G+ + Sbjct: 236 LTDPKMYVHMPGGVLEVEIEKDGSVLMTGEVGYV--GRFTLS 275 >gi|327400806|ref|YP_004341645.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6] gi|327316314|gb|AEA46930.1| Diaminopimelate epimerase [Archaeoglobus veneficus SNP6] Length = 280 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 23/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALST-DDNTHFDQIMLIHDFQDASVD 61 ++F KM G GN +V+D + + A+ D + + A D Sbjct: 5 LEFTKMHGNGNDFVVVDEFHEEVVPEEHKPQFVRAVCKPRFGVGADGAIFVQPSSVA--D 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117 A R N DGSE CGNG+RC R++ K+ T I+ + V+ ++ + + Sbjct: 63 AKFRYFNSDGSEAAMCGNGIRCFARYVVEEGYADRRFKAETLAGIKELEVSVKDGEYWVR 122 Query: 118 VDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DL 175 VDMG+P+ + IP A FD + D F + + + V+ G PHA+ FV+ D Sbjct: 123 VDMGKPVFEPAKIPAAGGTFDGVWHDTFELFGRKV----DVYAVNTGVPHAVVFVDSLDF 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 + + F EG N++ AR+ S +++RT+ERGV T +CG+ + A V Sbjct: 179 DILEARKI----RYNKAFPEGTNVNFARIVSRNEVEVRTYERGVEDETLSCGTGSVAVVA 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L VK GG L IE D FMTG+A + ++G L Sbjct: 235 VASKLGLIEPEAIVKTKGGVLRIEVRD--TAFMTGKATRVFDGVLK 278 >gi|170759688|ref|YP_001787305.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch Maree] gi|169406677|gb|ACA55088.1| diaminopimelate epimerase [Clostridium botulinum A3 str. Loch Maree] Length = 273 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGNLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 + IIN DGS CGNG+RC +++ + +K ET G+ A + +G + Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKKAFLDIEGDKVKYIT 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + I + + + MG PH I F D Y Sbjct: 120 INMGEP--IFEGEKISNEKEKIINKIIRENNKEYSITAFHMGVPHTIIFGNLDEYDIGEG 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS L Sbjct: 178 K---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASNLLGY 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 235 TGKSTEVMLPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|198275828|ref|ZP_03208359.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135] gi|198271457|gb|EDY95727.1| hypothetical protein BACPLE_02003 [Bacteroides plebeius DSM 17135] Length = 268 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G+GN + ++ + A S D ++LI D A D + Sbjct: 3 IEFTKMHGLGNDYIYVNTMKYPLTNPEEKSIAWSRPHTGIGSDGLVLIGDSDKA--DFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE + CGN RC+ + + +T+ GI + Sbjct: 61 RIFNADGSEAKMCGNASRCIGKYLYEYGLTTKTDILLDTLSGIKELHLQVKEGKVESVRV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I + + R VSMGNPH + FV+ + LA Sbjct: 121 DMGIPADI-------------HWVDLGDAYPFRKGVAVSMGNPHLVIFVDK-MEEVALAE 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +L +HP+F + VN+ A+V + E++ +R WERG G+T ACG+ ACA+ VA+ + Sbjct: 167 VGPVLERHPLFPDRVNVEFAQVLNKENIRMRVWERGSGITQACGTGACATAVAAAFSGQC 226 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 +V M GG L I+W + H++MTG A K ++G +++K Sbjct: 227 GSHATVCMDGGDLTIDWAGEGQHLYMTGPAVKVFDGTIELKE 268 >gi|78060948|ref|YP_370856.1| diaminopimelate epimerase [Burkholderia sp. 383] gi|77968833|gb|ABB10212.1| diaminopimelate epimerase [Burkholderia sp. 383] Length = 266 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 79/275 (28%), Positives = 122/275 (44%), Gaps = 14/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F KM G+ ++D+RG I + F+Q+ ++ D DA+ A + Sbjct: 3 IGFHKMHANGDDFAIVDLRGATHAIDGRLARQMGDRKRGIGFNQLAVVSDCDDAA--ARV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + +CG+ R V L S T RG LV + ISV+MG P+ Sbjct: 61 AFWNADGSPLDTCGSATRGVAWQLMRETGLSSLVLRTPRGYLVCSAEANDRISVEMGTPL 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W+ +PLA + D + P +MGNPH FFV+ DL D+A+ G Sbjct: 121 TGWRDVPLAEALDTLAL----------PLPGAPAACNMGNPHCTFFVD-DLRAIDVAALG 169 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + HP+F + N+ +V + LR WERG G+ GS +C +VV + Sbjct: 170 PAIETHPLFPQKTNVHFVQVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRGLLDD 229 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V+ GG + ++W V ++G + G Sbjct: 230 IVRVECDGGDVTVQWSGTGSVLLSGPVTFGFSGVW 264 >gi|300869858|ref|YP_003784729.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000] gi|300687557|gb|ADK30228.1| diaminopimelate epimerase [Brachyspira pilosicoli 95/1000] Length = 279 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 137/285 (48%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM GIGN + ID + + D I+LI + A D Sbjct: 3 LNFTKMHGIGNDYIYIDCFKESFTVEDAKKYSPILSHRHYSIGADGIVLIMPSKIA--DV 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGSI 116 +R+ N DGSE + CGNG+RCV ++ K ET+RG+L A K + S+ Sbjct: 61 TMRMFNYDGSESEMCGNGIRCVAKYAYDNNISKNNPMKIETLRGVLEANLFIKNDEVDSV 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++M PIL+ IP + + + F VSMGNPH + FV+ D+ Sbjct: 121 EINMDSPILEGLKIPTTIDKTPIIDEPITFNGKTYYF----TCVSMGNPHCVIFVD-DVK 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G+ + +PMF N+ +V + + RTWERG T ACG+ A A VA Sbjct: 176 NMRIDDIGSFMENNPMFPNRTNVEFVQVLNRGEVIQRTWERGSAETLACGTGASAVCVAG 235 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +T+ + +LGG L++ + +N+VFM GEA+ + G +++ Sbjct: 236 FISKRTDNIILNHLLGGDLILTYK-DNNVFMKGEARYAYRGYVEL 279 >gi|153938075|ref|YP_001391234.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland] gi|170755940|ref|YP_001781473.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra] gi|152933971|gb|ABS39469.1| diaminopimelate epimerase [Clostridium botulinum F str. Langeland] gi|169121152|gb|ACA44988.1| diaminopimelate epimerase [Clostridium botulinum B1 str. Okra] gi|295319270|gb|ADF99647.1| diaminopimelate epimerase [Clostridium botulinum F str. 230613] Length = 273 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + R + + MG PH I F D Y Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|331269367|ref|YP_004395859.1| diaminopimelate epimerase [Clostridium botulinum BKT015925] gi|329125917|gb|AEB75862.1| diaminopimelate epimerase [Clostridium botulinum BKT015925] Length = 268 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 11/275 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 M+G GN +VID R N T I D I+LI + + D + IIN Sbjct: 1 MQGTGNDFVVIDDRKGVFNGTESEIAKQVCHRRFGIGADGILLIRKSEIS--DIKMEIIN 58 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGEPILD 126 DGS CGNG+RC R++ T ET GI +A N + + + + Sbjct: 59 ADGSYADMCGNGIRCFARYVYDNKIVYKDTINIETGDGIKIAHLNIVDNTVEGITINMGE 118 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 + L P + ++ +N + + DD+ G Sbjct: 119 FSLNPEDIPANCKEKIMNKKIYINDKEYIINSMKLGVPHTVVMCKTDDID----IEEGKY 174 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 + K+ +F+EG N++ + +++ ++TWERG G T ACG+ +CAS S L Sbjct: 175 IEKYELFTEGTNVNFCEIIDKDTIKVKTWERGAGPTLACGTGSCASFAISNILGYVGNKA 234 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + GG L+ E+ +N VFMTG A+ ++G+ ++ Sbjct: 235 KVFVPGGELITEFK-DNKVFMTGPAEIVFKGEFNL 268 >gi|310780441|ref|YP_003968773.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926] gi|309749764|gb|ADO84425.1| diaminopimelate epimerase [Ilyobacter polytropus DSM 2926] Length = 275 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 18/281 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M+ F K GIGN ++ R + + A+ + D +M+ + D Sbjct: 1 MLKFEKYHGIGNDFIIF--REEEVAGLDYSELAMKVCHRNFGIGADGMMV--AAKSEKAD 56 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVAKENRDGSI 116 + N DGSE CGNG+RC F+ + + T I +++ Sbjct: 57 IRMIFYNADGSEAPMCGNGVRCFSHFVRNNKLVEKDLIAVETLAGNMLIKTEEKDGRYLA 116 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG PI + IP++ S ++D ++ + + MG H++ FV+ DL Sbjct: 117 RVNMGMPIFETDSIPMSVS----EKDYIERKIESYDREFSISALFMGTTHSVTFVD-DLE 171 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 D+ +G L +P+F N++ A+ S + +D++TWERG G T ACG+ ACA VV Sbjct: 172 TLDIYKYGRNLEINPIFPNKTNVNFAKAISKDRVDVKTWERGAGYTFACGTGACAVVVIG 231 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + ++ V V + GG L IE D+ VFMTGE++K EG Sbjct: 232 NLTGRLDKNVEVAVPGGKLFIELTDDG-VFMTGESQKIAEG 271 >gi|170736997|ref|YP_001778257.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] gi|169819185|gb|ACA93767.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3] Length = 269 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + + D + + F+Q+ +I Sbjct: 3 IAFQKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVI--SDGDDA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 61 VARVAFWNPDGSALDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ +P++ + D + P SMGNPH FFV+ DL D+ Sbjct: 121 GAPRLGWQDVPVSEAVDTLAL----------PLPGAPAACSMGNPHCTFFVD-DLRAIDV 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 170 ATLGPTIETHPLFPLKTNVHFVQVIDRMHIRLRIWERGGGVPLGSGSCSCGAAVNGIRRG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG + ++W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVTVQWDGAGSVFLSGPVTFGFSGVW 268 >gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B'] Length = 279 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 88/284 (30%), Positives = 128/284 (45%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM GIGN + + N A+ + D I+LI + A DA + Sbjct: 1 MKFWKMHGIGNDYIYFNCFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPSRVA--DAKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGIL----VAKENRDGSISV 118 R+ N DGSE + CGN +RCV ++L + ET+ GI + + V Sbjct: 59 RMFNLDGSEGKMCGNAIRCVGKYLYENNITRKTNLKIETLSGIKDLTLQVENGAVNIVEV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG PIL+ IP+ D + I N VSMGNPH DD+ Sbjct: 119 DMGAPILEPAKIPVDLEGDVIINHELXI----EEVAYNITCVSMGNPHC-VVFVDDVDDI 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +L G L + +F + VN + + + +R WERG G T ACG+ ACA VA Sbjct: 174 ELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACAVAVACVL 233 Query: 239 LH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K N +++ + GG L I + + +FMTG A K + G ++ Sbjct: 234 NGYAKKNEDITIILKGGELKIRYT-DETIFMTGTATKAFSGDVE 276 >gi|225850571|ref|YP_002730805.1| diaminopimelate epimerase [Persephonella marina EX-H1] gi|225645291|gb|ACO03477.1| diaminopimelate epimerase [Persephonella marina EX-H1] Length = 289 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 77/280 (27%), Positives = 132/280 (47%), Gaps = 15/280 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN+ +V+D ++TS++I + D ++L D +RI Sbjct: 6 FVKSHGLGNEYIVLDDENIDFSLTSESIKTICDVHFGIGSDGVLL--KVHSEKADFGLRI 63 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS-----ISVD 119 N DGSE + GNG+R ++L ++ FT ET G++ A+ + I+VD Sbjct: 64 FNPDGSEAEKSGNGLRIFCKYLFDLGFTDKREFTVETKGGVVRARVEEVINGKARLITVD 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +G+ + IP++ D+ ++ + VS+GNPH + V+ L Sbjct: 124 IGKATFKTEDIPVSIEKDECIGEKIVVDDREFEIN----CVSVGNPHCVIIVDK-LDDEI 178 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + +G L+ H +F N+ + S + +++R WERG G T A G+++ A Sbjct: 179 VKKYGRLIENHRIFPNRTNVQFVKPVSRDQVEIRIWERGAGYTLASGTSSSAVAAVMVKR 238 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T+R V+V M GG L I + ++ MTGE ++ G L Sbjct: 239 GITDRDVNVVMPGGILRISVDEEWNIRMTGEVQEICRGVL 278 >gi|187779484|ref|ZP_02995957.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC 15579] gi|187773109|gb|EDU36911.1| hypothetical protein CLOSPO_03080 [Clostridium sporogenes ATCC 15579] Length = 273 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G GN +V+D R + L + D I+ + + + + Sbjct: 1 MEFTKMTGNGNDFIVLDDRKGELIGKEKELAQKLCNRHFSIGADGILFVRES-NTNAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKAIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F D Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYSI----TAFHMGVPHTIIFGNLD--- 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G + P+F EG N++ V + ++TWERG G T ACG+ +CAS +A+ Sbjct: 171 EYDIEEGKNIETLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIAAN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE + +FM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEKG-IFMKGPADICFRGEIDV 273 >gi|310659167|ref|YP_003936888.1| diaminopimelate epimerase [Clostridium sticklandii DSM 519] gi|308825945|emb|CBH21983.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium sticklandii] Length = 281 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN ++ + + + A D +M D + Sbjct: 1 MLFWKMQGAGNDFILFNNLDGRYVDYSQLAKKLCDRHFGIGADGMMACEKSTS--CDIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL------VAKENRDGSISV 118 N DGS+ CGNG+RC +F+ +F + + + + V Sbjct: 59 VYYNQDGSKADMCGNGIRCFSKFIYENKIVDKTSFLVEAAARNYDISLITQNDEVKLVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG P L+ KLIP + + + I L V +G PH + F + D+ Sbjct: 119 EMGLPTLEPKLIPALTDYTEFINEEIVIEDRKFL----ASAVLIGVPHLVIFED-DISLQ 173 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L +G+ L ++ +F + +N++ ++ ++ ++T+ERG G T ACG+ +S + Sbjct: 174 ELDYYGSRLEQNTKLFPKKINVNFVKIIDKSTIGVKTYERGCGYTLACGTGMTSSAYIAN 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L N V V GG + IE ++MTG A+K +G++D Sbjct: 234 KLGLVNDKVKVSSPGGEVEIEILK-EKLYMTGPAQKICDGRVD 275 >gi|307354039|ref|YP_003895090.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571] gi|307157272|gb|ADN36652.1| diaminopimelate epimerase [Methanoplanus petrolearius DSM 11571] Length = 286 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 24/288 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQD 57 ++ ++ F K++G GN ++ID D ++ + Sbjct: 11 EAFVIPFVKIQGNGNDFILIDETDGEVIPDPMKAEFAALYCDRRFGIGADGVLFLSKSDK 70 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAK----ENR 112 A++ +RI+ D SE + CGNG+RC+V++ + ++ ET+ G L + EN Sbjct: 71 ANI--RMRIMQPDKSEAEMCGNGIRCLVKYAYDNDYITETCVVETLAGNLPVELGYNENN 128 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +DMG+ + + IP + + + + + + V+ G PHA+ FV+ Sbjct: 129 EFIAKIDMGKVLYECSEIPAKGGGEYLRKINGY----------DVYAVNTGVPHAVIFVD 178 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACA 231 + + + H F G N++ +T + + +RT+ERGV T +CG+ + A Sbjct: 179 -SVEKLSIEEIAPSIRYHESFPNGANVNFVEITGKDEISIRTYERGVESETLSCGTGSTA 237 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 S + L KT V V +GG L+I + + + FM G A + G++ Sbjct: 238 SAAVAYKLGKTGSRVKVNTVGGPLVI-YLEEDVAFMEGPAATVFTGRI 284 >gi|260589955|ref|ZP_05855868.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] gi|260539762|gb|EEX20331.1| diaminopimelate epimerase [Blautia hansenii DSM 20583] Length = 304 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K +GN L+ D + + + I L + D I + ++ Sbjct: 25 MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 82 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISVDM 120 ++ N DGSE + GN +R +L + + +S +F K I + M Sbjct: 83 KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 142 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ D + I L + + F+ G + VS+GNPH + + ++ + Sbjct: 143 GQLSFDSEKIGLTGPKREALHEYFNFGGEEY----ACTCVSVGNPHCVIITD-EISRAKV 197 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G F E +N I +V ++ + +ERGVG T + G+ +CA+ A+ L Sbjct: 198 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGAAYRLG 257 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG L + +N +V M G K +L Sbjct: 258 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 296 >gi|294501682|ref|YP_003565382.1| diaminopimelate epimerase [Bacillus megaterium QM B1551] gi|294351619|gb|ADE71948.1| diaminopimelate epimerase [Bacillus megaterium QM B1551] Length = 284 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 92/283 (32%), Positives = 140/283 (49%), Gaps = 17/283 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM +GN + ++M H + A+ + D ++LI + A D Sbjct: 5 QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----IS 117 +R+ N DGSE ++CGNG+RCV ++ S F ET+ G++ A + G+ ++ Sbjct: 63 MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG PIL + IP+ + + L VSMGNPH +F+V +D+ Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKERL---KGTAVSMGNPHVVFYV-NDIEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K F EGVN+ V + L+ R WERG G+T ACG+ ACA+VV+S Sbjct: 179 APLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSSV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 KT + V + GG L I W + +V MTG A +G Sbjct: 239 LNEKTKKDAPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDGT 281 >gi|288779625|dbj|BAI70377.1| diaminopimelate epimerase [Streptomyces lavendulae subsp. lavendulae] Length = 287 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 116/283 (40%), Gaps = 8/283 (2%) Query: 1 MQS-SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M++ S + F KM G GN +V+D+R D D ++ I + + A Sbjct: 4 MRTPSTLPFTKMHGAGNDFVVLDLRDGPDPSPELCRALADRHKGVGCDLVLGIREPRSAR 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSIS 117 A I DGS CGNG RCV + + F + G + Sbjct: 64 AVAAFDIWTADGSRSAQCGNGARCVAAWAVRAGLARGPRFALDSPSGTHEVDVLDADTFR 123 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V + P + IPL F + + VSMGNPHA+ V+ D Sbjct: 124 VALAVPRFAPESIPL---FGHDGEQDLYEADLGDGTRVRFAAVSMGNPHAVIEVD-DTAT 179 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +A G + +F VN+ ARV S + + LR E G G T ACGS ACA+ Sbjct: 180 APVARVGRAVQASGLFLPTVNVGFARVESRDRVHLRVHEYGAGETLACGSGACAAAAVLM 239 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + +R VSV + GG L I W D+ V MTG A +EG Sbjct: 240 RRGRVDRNVSVVLPGGELRISWPDDAADVLMTGPAAFVYEGTF 282 >gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9] gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9] Length = 244 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 9/248 (3%) Query: 37 ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--- 93 D ++ Q D +RI N DGSE + CGNG+RC+ FLT Sbjct: 1 MCDRHFGIGADGVIFALPGQK-GTDYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISR 59 Query: 94 -RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152 + + T+ GI+ + DG + VDMG P L + IP D ++ Sbjct: 60 SKDYYLIHTLAGIIRPQLTDDGQVKVDMGSPRLLAQEIPTT--LVPGDSKVINLPLEIGK 117 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212 + VSMGNPH I FVE D+ + G HP+F + N +V + L + Sbjct: 118 QTWHITCVSMGNPHCITFVE-DVASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSHLKM 176 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEA 271 R WERG G+T ACG+ ACAS+VA + +R ++++ GG L I+W + + ++MTG A Sbjct: 177 RVWERGAGITLACGTGACASLVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMTGPA 236 Query: 272 KKEWEGKL 279 ++ + GK+ Sbjct: 237 ERVFTGKI 244 >gi|229147481|ref|ZP_04275828.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24] gi|228635907|gb|EEK92390.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST24] Length = 280 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ V+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVILVD-DVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICCGVYE 275 >gi|268316322|ref|YP_003290041.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252] gi|262333856|gb|ACY47653.1| diaminopimelate epimerase [Rhodothermus marinus DSM 4252] Length = 292 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 112/296 (37%), Gaps = 28/296 (9%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 ++ +++F KM G GN +V+D R + + A D ++ + + Sbjct: 3 KTLVLEFTKMNGAGNDFVVLDNRFYAFSDEELAELARRYCRRRFGIGADGLLALAPPRQP 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSIS 117 +R N DGS CGNG RC+ RF R + FET GI A+ Sbjct: 63 DTHYRMRYFNADGSLGTMCGNGARCLARFARLAGIRDNPLRFETDAGIYRAEV------- 115 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P + L + + + G H + FV + Sbjct: 116 -----PDDPQAPVRLYLPPAGTYEPNPRLATPLDTQFESVAFIWTGTEHLVCFVPA-VEA 169 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTS----LESLDLRTWERGVG-LTAACGSAACA 231 +A +G L P + G N+ V L RT+E+GV T ACG+ A A Sbjct: 170 TPVAEWGPRLRHDPALQPRGANVDFVEVVGEAQERSVLRARTYEKGVEAETLACGTGAVA 229 Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 + + + + + ++V M GG L + + + +F+ G A+ + G +++ Sbjct: 230 AALVAWRQGRVRQLPIAVHMPGGVLTVGFRPEDDGETELFLEGPAEVVFRGTVEVP 285 >gi|228903437|ref|ZP_04067564.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222] gi|228856212|gb|EEN00745.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 4222] Length = 280 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLVLVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|65316928|ref|ZP_00389887.1| COG0253: Diaminopimelate epimerase [Bacillus anthracis str. A2012] gi|228917567|ref|ZP_04081111.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229158537|ref|ZP_04286596.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342] gi|228624851|gb|EEK81619.1| Diaminopimelate epimerase [Bacillus cereus ATCC 4342] gi|228842047|gb|EEM87150.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 280 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 275 >gi|107027596|ref|YP_625107.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116693692|ref|YP_839225.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] gi|105896970|gb|ABF80134.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054] gi|116651692|gb|ABK12332.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424] Length = 269 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 18/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + + D + + F+Q+ +I Sbjct: 3 IAFLKMNANGDDFVIVDLRGHEHDRAHPVDGDLVRRMGDRHRGIGFNQLAVI--SDGNDA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I VDM Sbjct: 61 AARVAFWNPDGSTLDTCGSATRGVAWKLMRETGATSVVLRTNRGRLHCSQDADGLIKVDM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ +PL+ + D + P SMGNPH FFV+ D+ D+ Sbjct: 121 GAPRLGWQDVPLSEAIDTLAL----------PLPGAPAACSMGNPHCTFFVD-DVGTIDI 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + HP+F N+ +V + LR WERG G+ GS +C + V Sbjct: 170 EALGPTIETHPLFPLKTNVHFVQVIDRSHIRLRIWERGGGVPLGSGSCSCGAAVNGIRCG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG ++++W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVIVQWDGAGSVFLSGPVTFGFSGVW 268 >gi|229590999|ref|YP_002873118.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25] gi|229362865|emb|CAY49775.1| putative diaminopimelate epimerase [Pseudomonas fluorescens SBW25] Length = 267 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 83/275 (30%), Positives = 128/275 (46%), Gaps = 14/275 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+ ++ID RG D IT+ L F+Q+ +++D ++A+ A Sbjct: 2 LLPFVKMHAHGDDFIIIDRRGLDDPITAAIARQLGNRHTGIGFNQLAVVYDCEEAA--AR 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 I N +G+ + +CG+ R V L + S T RG+L +SVDMGEP Sbjct: 60 ISFWNANGTPLATCGSATRGVADRLMHETGKDSIVLRTDRGLLTCVRAPGRQVSVDMGEP 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L+W +PL+ + D + +P SMGNPH FFV+ D+ D+A Sbjct: 120 SLEWTAVPLSDAMDTLTL----------PVEGSPAACSMGNPHCTFFVD-DIAAVDVAGL 168 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L HP+F N+ +V + LR WERG G+ GS C +VV + Sbjct: 169 GPALEIHPLFPARTNVHFVQVLDRSHIRLRIWERGGGVALGSGSCCCGAVVNGIRRGLLD 228 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 V V+ GG + ++W V +TG + +G Sbjct: 229 ATVQVQCDGGTVTVQWTGEGGVVLTGSVEPVMQGS 263 >gi|148379873|ref|YP_001254414.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502] gi|153933047|ref|YP_001384170.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397] gi|153935384|ref|YP_001387711.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall] gi|148289357|emb|CAL83453.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 3502] gi|152929091|gb|ABS34591.1| diaminopimelate epimerase [Clostridium botulinum A str. ATCC 19397] gi|152931298|gb|ABS36797.1| diaminopimelate epimerase [Clostridium botulinum A str. Hall] Length = 273 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPIIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + R + + MG PH I F D Y Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|322806165|emb|CBZ03733.1| diaminopimelate epimerase [Clostridium botulinum H04402 065] Length = 273 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 84/284 (29%), Positives = 130/284 (45%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + +K+ + MG PH I F D Y Sbjct: 120 INMGEPIFEGEKI--SNEKEKIINKSIRENNKEYFI----TAFHMGVPHTIIFGNLDEYD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 174 IGEGK---NIEGLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|189465550|ref|ZP_03014335.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM 17393] gi|189437824|gb|EDV06809.1| hypothetical protein BACINT_01908 [Bacteroides intestinalis DSM 17393] Length = 272 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 20/283 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM G GN + ++ ++ + D ++LI A D Sbjct: 2 TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ + + + T +T+ GI + K + + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + R D ++ G VSMGNPH + FVE D+ + Sbjct: 120 VT--------VDMGRPADMKEQPIEANG-----QKFTGTTVSMGNPHLVIFVE-DIKDIN 165 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 166 LESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVAAALT 225 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 K+ R + M GG L IEW + +HV+MTG A + ++G++ I Sbjct: 226 GKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGEVII 268 >gi|168180500|ref|ZP_02615164.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916] gi|182668755|gb|EDT80733.1| diaminopimelate epimerase [Clostridium botulinum NCTC 2916] Length = 273 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRESGT-DAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + R + + MG PH I F D Y Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L T ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYTGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|218288532|ref|ZP_03492809.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1] gi|218241189|gb|EED08364.1| Diaminopimelate epimerase [Alicyclobacillus acidocaldarius LAA1] Length = 278 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 83/278 (29%), Positives = 118/278 (42%), Gaps = 8/278 (2%) Query: 6 VDFAKMEGIGNKILVID---MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM +GN + +D D++ S A D ++L+ A D Sbjct: 1 MQFFKMHALGNNYVFVDTARATLPTDDLPSLARRVSDVRRGIGSDGLILVTPSDSA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DGSE +SCGNG+RCV R+ R + F V + + Sbjct: 59 GMRIWNADGSEAESCGNGLRCVARYAYERGLVDATHFSIETKAGVVAAQVHLDVDGRVRL 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDL 180 +D +VSMGNPH + V+ + D+ Sbjct: 119 VTIDMGKPRFGTEAVTYRGSDQGEDVRVEAGGARYTGTLVSMGNPHFVTLVDR-VDDVDV 177 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + HP F + VN+ V + + +D R +ERG G+T ACG+ ACASV A Sbjct: 178 ERVGRAIESHPDFPDRVNVEFVSVLAPDEIDFRVYERGSGVTFACGTGACASVAALAKKG 237 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 V+V +LGG L IE D+ HV+MTGEA EG Sbjct: 238 FVRNRVTVHLLGGDLDIEIRDDGHVWMTGEAHWVCEGT 275 >gi|282601131|ref|ZP_05980843.2| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176] gi|282569942|gb|EFB75477.1| diaminopimelate epimerase [Subdoligranulum variabile DSM 15176] Length = 305 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 120/283 (42%), Gaps = 10/283 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL--STDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM+G GN + +D R + AL + D ++ I Q + DA Sbjct: 26 LEFTKMQGAGNDYIYLDCRHSGVPADAAQWAALLSRRRFSVGADGLICIAPPQLSDGDAT 85 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR--GILVAKENRDGSISVDMG 121 + + N DGSE CGNG+RCV +L + +K R G + MG Sbjct: 86 MVMFNADGSEGAMCGNGIRCVAEYLYTHGVQKELIELDTRQAGRKTLYRVGEHRWRAGMG 145 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI-FFVEDDLYHYDL 180 +P + + V VSMGNPH + F E L Sbjct: 146 RFSTRAADLP---AVGLGAGPLLEVPLVAAGQSWQVSCVSMGNPHCVVFCNEAPPAGVQL 202 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A +G + HP F +G+N+ + S SL WERG G T ACG+ ACA+ V Sbjct: 203 ADWGAAVENHPAFPQGINVEFVQAESPTSLTTTVWERGSGATLACGTGACAAAVVGVLRG 262 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R + V++ GG L + ++ V +TG A+ ++G +++ Sbjct: 263 ICPRETPIDVRLPGGTLTVRVLQDDTVLLTGPAETVFDGYVEV 305 >gi|226949210|ref|YP_002804301.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto] gi|226841748|gb|ACO84414.1| diaminopimelate epimerase [Clostridium botulinum A2 str. Kyoto] Length = 273 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 19/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSIGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDGSIS 117 + IIN DGS CGNG+RC +++ + +K ET G+ A +E++ I+ Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEEDKVKYIT 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++MGEPI + + I + R + + MG PH I F D Y Sbjct: 120 INMGEPIFEGEKISNEKEKIMNKSIR------ENNKEYSITAFHMGVPHTIIFGNLDEYD 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS Sbjct: 174 IGEGK---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASN 230 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L ++ V + GG L IE +N VFM G A + G++D+ Sbjct: 231 LLGYIGKSTEVILPGGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|266621470|ref|ZP_06114405.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] gi|288866845|gb|EFC99143.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479] Length = 285 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 14/282 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + K G+GN L+ D +T +A+ + D +++ + Sbjct: 3 ITLEKYHGLGNDYLIFDPNKNEWKLTKEAVRLICNRNFGVGSDGLLV--GPILGENKMEV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDM 120 +I+N DGSE + GNG+R ++L + F + + I V M Sbjct: 61 KILNPDGSEAELSGNGVRIFGKYLKDAGYVQKNHFAVNTLSGEQQIHYLNEEGTRIKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G IP+ ++ + G + + VS+GNPH + ++ +D+ + Sbjct: 121 GHLSFWSDEIPMTGPRREVLNETLTFGSIPYR----VTCVSIGNPHCVIWL-NDISKDLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G F E VN + RV ++++ +ERG G T A G++ CA+ A+ + Sbjct: 176 CRIGRHSEAADCFPEKVNTELLRVVDRTNIEIEIYERGAGYTLASGTSGCAAAGAAYKMG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T+ + V M GG L +E ++ V MTG+ GK + Sbjct: 236 LTDPKMYVHMPGGVLEVEIEEDVSVLMTGDVGYV--GKFTLS 275 >gi|228936237|ref|ZP_04099036.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823353|gb|EEM69186.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 280 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVYE 275 >gi|297180324|gb|ADI16542.1| diaminopimelate epimerase [uncultured bacterium HF4000_009C18] Length = 275 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 89/278 (32%), Positives = 147/278 (52%), Gaps = 4/278 (1%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + +D KM+G+GN ++ D R ++T D I +S N DQ++ I + ++ + Sbjct: 2 NKLDAYKMDGLGNDFIIFDKRKKSISLTKDQIIKISDRSNIGCDQVIFIDNDKNNNT--S 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DG E+ +CGNG RC L K + T GIL A+ + ++MG+P Sbjct: 60 LTFYNSDGGEIAACGNGSRCTAYLLMKENNSKKISLRTKVGILQAELYDKNLVRINMGQP 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 W IPL++ D + + I + + F +S+GNPH IFFVE D ++L Sbjct: 120 NFKWGKIPLSKEMDNKNL-KIKINSTDDKEIEGGFSLSVGNPHIIFFVE-DFNKFNLKEI 177 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + H F E N+++A + + + + ++ WERG GLT ACG+AACA+ VA L Sbjct: 178 GPKIENHNYFPEKCNVTLASIKNKKHVKIKVWERGAGLTKACGTAACATAVAGAVLKLNE 237 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R V ++ G L I+W+ +N+++MTG+ + + + I Sbjct: 238 RYVDIEFQEGLLNIDWNADNNIYMTGKISEVKKITVSI 275 >gi|30410829|ref|NP_660893.2| diaminopimelate epimerase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 269 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 138/275 (50%), Gaps = 10/275 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +VI+ +T I LS + FDQ++LI + D RI N Sbjct: 1 MHGLGNDFMVIESIKQDFILTKSIIENLSNRNTGVGFDQLLLIEKSNNFKFDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 +G+EV+ CGNG RCV FL + + ++ T + + K D +I V+M EP Sbjct: 61 NGNEVEQCGNGARCVGLFLFLKGLINKRKIMLSTNKKNISIKFMSDNNIQVNMNEPSFKL 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + I +++ + F + +N +VS+GNPH + VE + + + G LL Sbjct: 121 EEISISKKI---VLNNFSVKLINKNL--KCSLVSIGNPHCVIKVE-SINNAPVKKIGELL 174 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 K+ +F +G+N+ +V + + LR +ER VG T +CGS ACA+V + V Sbjct: 175 EKNSIFPQGINVGFMKVINKNHIQLRVYERDVGETQSCGSGACAAVAVGIAKNLLCDNVK 234 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V +LGG L+I+W N ++M G A ++G + I Sbjct: 235 VDLLGGNLIIKWKGFNYPLYMIGTACHIYDGYIYI 269 >gi|331084274|ref|ZP_08333379.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] gi|330401809|gb|EGG81386.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA] Length = 280 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 63/279 (22%), Positives = 113/279 (40%), Gaps = 12/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K +GN L+ D + + + I L + D I + ++ Sbjct: 1 MEFYKYHSLGNDYLIYDCNKNQEALDKEKIVKLCNRNYGIGADGI--VEGPYKKEGKMYV 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISVDM 120 ++ N DGSE + GN +R +L + + +S +F K I + M Sbjct: 59 KVYNADGSEAEQGGNAIRIFAHYLKTIKEVQSESFSLYTKGGEVKLRFLNREGTRIQMTM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ D + I L + + F+ G + VS+GNPH + + ++ + Sbjct: 119 GQLSFDSEKIGLTGPKREALHEYFNFGGEEY----ACTCVSVGNPHCVIITD-EISRAKV 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G F E +N I +V ++ + +ERGVG T + G+ +CA+ + L Sbjct: 174 CAIGKYSEVADYFPERINTQIVKVLDKNNIQIEIYERGVGYTLSSGTCSCAAAGVAYRLG 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG L + +N +V M G K +L Sbjct: 234 LIDSDVMVHTPGGKLWTQIDENFNVKMIGSVKGICRIEL 272 >gi|295707030|ref|YP_003600105.1| diaminopimelate epimerase [Bacillus megaterium DSM 319] gi|294804689|gb|ADF41755.1| diaminopimelate epimerase [Bacillus megaterium DSM 319] Length = 284 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 17/282 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM +GN + ++M H + A+ + D ++LI + A D Sbjct: 5 QFTKMHALGNNYIYVNMFEEHIEEQELAPLAVKVSNVYTGIGSDGMILICPSERA--DVK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGS----IS 117 +R+ N DGSE ++CGNG+RCV ++ S F ET+ G++ A + G+ ++ Sbjct: 63 MRVFNNDGSEAKNCGNGLRCVAKYAYEHNLVTSERFFIETLSGVVEATVHPQGNEVPEVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +DMG PIL + IP+ + + L VSMGNPH +F+V +++ Sbjct: 123 IDMGAPILAREQIPMTGASQDQVVNEEMEFGKERL---KGTAVSMGNPHVVFYV-NNIEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K F EGVN+ V + L+ R WERG G+T ACG+ ACA+VV+S Sbjct: 179 APLTTLGPVVEKDSRFPEGVNVEFVEVVNERELNFRVWERGSGITQACGTGACAAVVSSV 238 Query: 238 CLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 KT + V V + GG L I W + +V MTG A +G Sbjct: 239 LNEKTKKDVPTVVHLAGGDLTIVWQNKGNVLMTGPANVICDG 280 >gi|15606880|ref|NP_214260.1| diaminopimelate epimerase [Aquifex aeolicus VF5] gi|6014911|sp|O67693|DAPF_AQUAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2984112|gb|AAC07649.1| diaminopimelate epimerase [Aquifex aeolicus VF5] Length = 279 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 125/296 (42%), Gaps = 32/296 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-------ITSDA--INALSTDDNTHFDQIMLIHDFQ 56 ++F K++G GN +VID R ++ + + D ++LI + Sbjct: 1 MEFWKLQGSGNDFVVIDDRDEKLESFLKERGVSKEDFVRKVCAFHTGVGADGLILIKNPD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGS 115 + D N DGS + CGNG RC VRF R FET+ G++ A+ +G Sbjct: 61 NPENDFKWEFFNSDGSVAEMCGNGSRCAVRFAYERGIVGNKVRFETLAGVIKAEVYENGR 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 P + L +++ ++ G PH + VE D+ Sbjct: 121 KVKVQLTPPSKPEEKTLTVDGEEVI----------------GVFINTGVPHFVVPVE-DV 163 Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233 ++ G + H +G N++ + S +++ +RT+ERGV T ACG+ A A Sbjct: 164 EKVNVIKLGRAIRFHEEFQPKGTNVNFVQPVSEDTIKVRTYERGVESETLACGTGATACA 223 Query: 234 VASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIKTGKW 286 + S + V+V G L I++ ++ VF+TG K +EG+L + ++ Sbjct: 224 IVSYLKGLVKKKPVNVLTRSGEVLTIDFSEDLKEVFLTGSVYKVFEGRLSEEVLEY 279 >gi|284113141|ref|ZP_06386598.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3] gi|283829694|gb|EFC34021.1| diaminopimelate epimerase [Candidatus Poribacteria sp. WGA-A3] Length = 289 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 122/282 (43%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN + +D + +T+ I A+ + D I+ + ++A D +RI Sbjct: 5 FFKGHGLGNDYIALDPKQLTFKLTAKTIRAICDRNWGVGSDGILALVPSKEA--DFGLRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKEN-----RDGSISVD 119 N DGSE + GNG+R FL + KR+SF+ ET G++ + + +VD Sbjct: 63 FNPDGSEAEKSGNGLRIFGCFLYATKKTKRRSFSVETKGGLVHVELTLDRNGQVNGATVD 122 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYH 177 MG + +P ++ + F VS+GNPH + F + Sbjct: 123 MGRASFRPRDLPCTIKAPELIMQPIKAVGQSLRFTG----VSVGNPHCVVFRDRGGSWTR 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL G L HP F + N+ +A T ++ + WERG G T A GS+ACA A Sbjct: 179 EDLLRMGPELETHPTFPKRTNVQLAVPTGPHAMSILIWERGAGETQASGSSACAVASAGV 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V V GG L I + + G + ++G+ Sbjct: 239 RLGLVKSPVRVFAPGGRLDITVDAQYSLTLKGPVTEVYQGRF 280 >gi|228923674|ref|ZP_04086952.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835803|gb|EEM81166.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 280 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQISEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHAI FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEDETPFIRENFLYNNHRYAF----TAVSMGNPHAIIFVD-DVEKA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVA+ Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWTEEGSVLMKGPAEVICRGVYE 275 >gi|224540097|ref|ZP_03680636.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus DSM 14838] gi|224518290|gb|EEF87395.1| hypothetical protein BACCELL_05010 [Bacteroides cellulosilyticus DSM 14838] Length = 270 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 20/280 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++ F KM G GN + ++ ++ + D ++LI A D Sbjct: 2 TRVIKFTKMHGAGNDYIYVNTLKYPIESPEKLSVEWSAPHTGIGSDGLVLIGSSDKA--D 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +RI N DGSE + CGN RC+ + + + T +T+ GI + K + + Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYEYGLTSQTAVTLDTLSGIKILKLHVEDGKVNT 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + R D ++ G +SMGNPH + FVE D+ + Sbjct: 120 VT--------VDMGRPADMKEQPIEANG-----QKFTGTTLSMGNPHLVIFVE-DIKDIN 165 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L S G L HP+F + +N+ A+V + +R WERG G+T ACG+ ACA+ VA+ Sbjct: 166 LESIGPKLENHPLFPDRINVEFAQVLEHGKIRMRVWERGSGITQACGTGACATAVAAALT 225 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 K+ R + M GG L IEW + +HV+MTG A + ++G+ Sbjct: 226 GKSGRKTDIIMDGGSLTIEWDEKTDHVWMTGGAVRVFDGE 265 >gi|297521684|ref|ZP_06940070.1| diaminopimelate epimerase [Escherichia coli OP50] Length = 224 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 9/230 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MGE Sbjct: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + +P + ++ VVSMGNPH + V+ D+ + + Sbjct: 121 PNFEPSAVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-DVDTAAVET 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 G +L H F E N+ +V E + LR +ERG G T ACGS ACA+ Sbjct: 175 LGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAA 224 >gi|229124477|ref|ZP_04253662.1| Diaminopimelate epimerase [Bacillus cereus 95/8201] gi|228658817|gb|EEL14472.1| Diaminopimelate epimerase [Bacillus cereus 95/8201] Length = 280 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 143/284 (50%), Gaps = 23/284 (8%) Query: 11 MEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 M G+GN + ++M + ++ ++ + + D ++LI A V +R Sbjct: 1 MHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVD 119 + N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + +D Sbjct: 57 MFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKID 116 Query: 120 MGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ Sbjct: 117 MGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQA 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS Sbjct: 172 PLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASIL 231 Query: 239 LHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K R ++V + GG L+I W + +V M G A+ G + Sbjct: 232 NGKMERGKEITVHLAGGDLMIAWIEEGNVLMKGPAEVICHGVYE 275 >gi|83814782|ref|YP_445539.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855] gi|83756176|gb|ABC44289.1| diaminopimelate epimerase [Salinibacter ruber DSM 13855] Length = 285 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 20/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 +S MV F KM+G GN +V+D R D +++ A D ++ + + + Sbjct: 5 RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSIS 117 + D + +N DGS CGNG RC+ RF + F+T G+ A Sbjct: 65 AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P + + L R + +R G H + V+ DL Sbjct: 117 ---TAPENNPSGVRLFVPDITEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVVD-DLDA 172 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 + +G L + P + G N++ + + L LRT+E+GV T +CG+ A+ Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +G L + + V+ GG L + + +++ G A ++G+++ Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279 >gi|222150097|ref|YP_002551054.1| diaminopimelate epimerase [Agrobacterium vitis S4] gi|254767087|sp|B9JUB9|DAPF_AGRVS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|221737079|gb|ACM38042.1| diaminopimelate epimerase [Agrobacterium vitis S4] Length = 303 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 143/291 (49%), Positives = 193/291 (66%), Gaps = 5/291 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 V+FAKM G+GNKILV+DMRG D + A AL+ + THFDQIM IHD + A A+I Sbjct: 5 VEFAKMNGLGNKILVVDMRGRADRVMPQAAIALAGNAETHFDQIMAIHDPKLAGTFAYID 64 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 IINCDG+ Q+CGNG RCVV+ L++ K+FTF+T+ GIL A E+ D ++SVDMG P+ Sbjct: 65 IINCDGTLAQACGNGTRCVVQALSAETGLKAFTFQTLAGILNAVEHDDRTVSVDMGSPVF 124 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 DW IPL+ F R IGP++ L +P V+SMGNPHA+F+V+ D YDL FG Sbjct: 125 DWNRIPLSEEFHDTSRIELQIGPIDAPVLHSPAVMSMGNPHAVFWVDRDPMSYDLERFGP 184 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 LL HP+F E N+++A+VTS ++ RTWERG GLT ACGSAACA+ V++ + R Sbjct: 185 LLENHPLFPEKANITLAQVTSRTTMTTRTWERGAGLTLACGSAACAAGVSAARTGRAERK 244 Query: 246 VSVKMLGGG----LLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V++ + L IEW + + HV MTG A+ EW G+LD +TG W ++ + Sbjct: 245 VTITVASSPNRQALDIEWRERDGHVIMTGAAEWEWAGQLDPQTGDWQREQQ 295 >gi|206564585|ref|YP_002235348.1| putative epimerase [Burkholderia cenocepacia J2315] gi|198040625|emb|CAR56611.1| putative epimerase [Burkholderia cenocepacia J2315] Length = 270 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 18/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINAL-STDDNTHFDQIMLIHDFQDASV 60 + F KM G+ +++D+RG + + D + + F+Q+ +I Sbjct: 3 IAFQKMNANGDDFVIVDLRGRKHDRAHPVDGDLVQRMGDRHRGIGFNQLAVI--SDGDDA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + N DGS + +CG+ R V L S T RG L ++ DG I V+M Sbjct: 61 AARVAFWNPDGSALDTCGSATRGVAWKLMRETGAASIVLRTNRGRLHCSQDADGLIKVEM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P L W+ IP A + D + P SMGNPH FFV+ D D+ Sbjct: 121 GAPRLGWQDIPFAEAADTLAL----------PLPGTPAACSMGNPHCTFFVD-DPDTLDV 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 A+ G + HP+F + N+ RV + LR WERG G+ GS +C +VV Sbjct: 170 AALGQAIEAHPLFPQKTNVHFVRVIDRTHIRLRIWERGGGVPLGSGSCSCGAVVNGIRRG 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V GG + + W VF++G + G Sbjct: 230 LLDDTVRVTCDGGDVAVHWDGAGSVFLSGPVTAGFSGVW 268 >gi|150390553|ref|YP_001320602.1| diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF] gi|167012030|sp|A6TRX5|DAPF_ALKMQ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149950415|gb|ABR48943.1| Diaminopimelate epimerase [Alkaliphilus metalliredigens QYMF] Length = 283 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN ++I A D +M++ + A D Sbjct: 3 IKFKKMHGTGNDFIMIYYEDYPFEQHFNQLAKEVCHRHFGIGADGLMIVKESSVA--DVQ 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE----NRDGSIS 117 ++ N DGSE CGNG+RC +F+ K++ FT ET+ G+ + + S+ Sbjct: 61 MKYFNSDGSEAGMCGNGIRCFAKFVYDEGLVKKEIFTVETLSGVKELQVATVEEKVSSVR 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ +LD K IP+ + ++ I + V+ IF DL Sbjct: 121 VNMGKMVLDPKQIPVNSEGLQFINEQLMIDGEKYTI---STVLLGVPHTIIFMETLDLD- 176 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G ++ H +F E N++ A++ + ++ +RTWERG G T ACG+ + + Sbjct: 177 -RVKRVGKIIENHQLFPENTNVNFAQIINQNTIRVRTWERGAGYTLACGTGVSSVCGIAN 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L V V++ GG L IE ++M G AK +G Sbjct: 236 HLSLVGPNVVVEIEGGKLDIEIAPEGDIYMEGPAKDICKGV 276 >gi|317504661|ref|ZP_07962627.1| diaminopimelate epimerase [Prevotella salivae DSM 15606] gi|315664232|gb|EFV03933.1| diaminopimelate epimerase [Prevotella salivae DSM 15606] Length = 281 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 15/288 (5%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLI-HDFQDASV 60 S+M+ F KM G GN + ++ A A S D ++LI + Sbjct: 2 STMIHFTKMHGAGNDYIYVNTLSEVIPQPEKAAIAWSRPHFGIASDGLVLIGKPSDTSQA 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN--RDGSI 116 D + I N DGSE CGN RC+ ++L + +K ET+ GI + + + + Sbjct: 62 DFSMHIFNADGSEAMMCGNASRCIGKYLYEKGLTTQKDIRLETLSGIKILHLHLDANNHV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + + + +P + + + VSMGNPH + FV+ D++ Sbjct: 122 ASVTVDMLEPQFNVPEQFTGNHPSLSAI-------PGAQEGIFVSMGNPHYVIFVD-DIH 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL G L F + N+ A++T+ +L R WERG G+T ACG+ ACA+ A+ Sbjct: 174 AIDLEKHGKRLENDATFPQRCNIEFAQLTATNTLHTRVWERGSGVTMACGTGACATATAA 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKT 283 +T R V++ M GG L +EW DNNH++++G A +EG + + Sbjct: 234 IQTQRTQREVTIDMDGGTLQVEWKADNNHIYLSGPAAFVFEGTIALPE 281 >gi|193213537|ref|YP_001999490.1| diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327] gi|193087014|gb|ACF12290.1| Diaminopimelate epimerase [Chlorobaculum parvum NCIB 8327] Length = 264 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 30/284 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +VID R N+ + ++A+ D ++LI + A D + Sbjct: 3 IEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETA--DFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMG 121 N DG CGNG RC V F R + FE G A+ S+ + M Sbjct: 61 NYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHML 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + H + V G+PHAI +V++ Sbjct: 121 PPKNFRDDL--------------------HAGAWSCHFVDTGSPHAIAYVDNLDQMDVFT 160 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +F EG N++ VT+ ++L +RT+ERGV T ACG+ A+ + S L Sbjct: 161 EGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLG 220 Query: 241 KT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 K + V V + G L++ ++D + +++ G A+ ++G + + Sbjct: 221 KVASSPVRVTVRSGETLMVGFNDAMDEIYLEGPARPVYQGTIAL 264 >gi|294507422|ref|YP_003571480.1| Diaminopimelate epimerase [Salinibacter ruber M8] gi|294343750|emb|CBH24528.1| Diaminopimelate epimerase [Salinibacter ruber M8] Length = 285 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 20/287 (6%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 +S MV F KM+G GN +V+D R D +++ A D ++ + + + Sbjct: 5 RSRMVSFTKMQGTGNDFVVLDNRSAQLSPDELSACAAAWCPRRYGVGADGLLALDAPKTS 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSIS 117 + D + +N DGS CGNG RC+ RF + F+T G+ A Sbjct: 65 AADYRMHYVNADGSRATMCGNGARCLFRFARRAGFQNDPLAFDTDAGLYRAT-------- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 P + + L R + +R G H + V+ DL Sbjct: 117 ---TVPEDNPSGVRLFVPDVTEVRADVALDRSVPQAVRRLCFAHAGTEHLVAVVD-DLDA 172 Query: 178 YDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 + +G L + P + G N++ + + L LRT+E+GV T +CG+ A+ Sbjct: 173 VPVQKWGRRLRRDPSLAPAGANVNFVELGGEDGLRLRTYEKGVEAETPSCGTGVLAAAET 232 Query: 236 SGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +G L + + V+ GG L + + +++ G A ++G+++ Sbjct: 233 AGRLTGADPETTLRVRTPGGKLAVGRAEGGTLYLQGPAVSVFDGRVE 279 >gi|237795342|ref|YP_002862894.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657] gi|229263101|gb|ACQ54134.1| diaminopimelate epimerase [Clostridium botulinum Ba4 str. 657] Length = 273 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 + IIN DGS CGNG+RC +++ + +K ET G+ A + +G + Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + I + + + MG PH I F D Y Sbjct: 120 INMGEP--IFEGEKISNEKEKIINKSIRENNKEYSITAFHMGVPHTIIFGNLDEYDIGEG 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS L Sbjct: 178 K---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASNLLGY 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T ++ V + G L IE +N VFM G A + G++D+ Sbjct: 235 TGKSTEVILPEGKLFIEIKEN-SVFMKGPADICFRGEIDV 273 >gi|153855191|ref|ZP_01996375.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814] gi|149752360|gb|EDM62291.1| hypothetical protein DORLON_02389 [Dorea longicatena DSM 13814] Length = 285 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 12/271 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 G+GN LV D + + L + D ++ +++ N Sbjct: 8 YHGLGNDYLVFDPNHNELKLDEANVKMLCDRNEGLGADGVL--EGPILKEDGMHVKVWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPIL 125 DGSE ++ GNG+R ++L + F+ G + + V MG+ Sbjct: 66 DGSESETSGNGVRIFAKYLKDASYVQKKNFKLYTGNGPVEVTFLNEDGSRLRVSMGKLSF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 126 WSDEIPVIGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIGD 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F +N I +V E++ + +ERG G T A G+ ACA+ + L TN Sbjct: 181 YSEIARYFPNRINTQIMQVIDKENIAIEIFERGAGYTRASGTGACAAAGVAYKLGLTNSK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V M GG L +E D+ +V+MTG+ + Sbjct: 241 VIVHMPGGELQVEVEDDWNVYMTGDVFYIAK 271 >gi|332702352|ref|ZP_08422440.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay] gi|332552501|gb|EGJ49545.1| Diaminopimelate epimerase [Desulfovibrio africanus str. Walvis Bay] Length = 282 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 114/287 (39%), Gaps = 27/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTD-DNTHFDQIMLIHDF--QDASV 60 + F KM+G GN +VID R + + D A+ D I + + V Sbjct: 9 MPFVKMQGSGNDFVVIDNRDRRVPVEAMADWAKAVCRRAFGIGADGIFFLENPPADRPGV 68 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVD 119 D N DGS + CGNG RC R T G + A+ G + V Sbjct: 69 DFIWHFYNADGSRAEMCGNGSRCAARLAYLLGIAPARHVIGTDAGPVRAEVLDSGRVKVQ 128 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + I L + V+ G PH + FV+ D+ D Sbjct: 129 LTPAKDARLDIALPAA----------------DKTLRAHFVNTGVPHTVIFVD-DVAKVD 171 Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237 L G + H +G N + A+V +++ LRT+ERGV T ACG+ A A+V S Sbjct: 172 LPDLGRTVRYHETFRPKGTNANFAQVVDKQTMLLRTYERGVEAETYACGTGASAAVYLSH 231 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L T V+V GG L I +N VF+ G A + G L +++ Sbjct: 232 KLGLTGPEVNVTTSGGEQLTISVDGDN-VFLAGAATVTFTGDLLLES 277 >gi|168184899|ref|ZP_02619563.1| diaminopimelate epimerase [Clostridium botulinum Bf] gi|182672038|gb|EDT83999.1| diaminopimelate epimerase [Clostridium botulinum Bf] Length = 273 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 11/280 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM G GN +V+D R + L + D I+ + + D Sbjct: 1 MKFTKMTGTGNDFIVLDDRKGSLIGKEKELAQKLCNRHFSVGADGILFVRES-DTDAQIQ 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 + IIN DGS CGNG+RC +++ + +K ET G+ A + +G + Sbjct: 60 MVIINADGSYASMCGNGIRCFAKYVWEKSIVKENPMIIETGDGLKEAFLDIEGDKVKYIT 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + I + + + MG PH I F D Y Sbjct: 120 INMGEP--IFEGEKISNEKEKIINKSIRENNKEYSITAFHMGVPHTIIFGNLDEYDIGEG 177 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + + P+F EG N++ V + ++TWERG G T ACG+ +CAS +AS L Sbjct: 178 K---NIERLPLFKEGTNVNFCEVVDKNKIKVKTWERGAGPTLACGTGSCASAIASNLLGY 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T ++ V + G L IE +N +FM G A + G++D+ Sbjct: 235 TGKSTEVILPEGKLFIEIKEN-SIFMKGPADICFRGEIDV 273 >gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3] gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3] Length = 289 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 94/288 (32%), Positives = 138/288 (47%), Gaps = 15/288 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ + + +S D ++LI D + Sbjct: 5 LRFTKMQGIGNDYVYVNGFEERVDNPGELAKRISDRHFGVGSDGLVLILPS--GVADLRM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD----GSISV 118 R+ N DGSE + CGN RCV ++ + ET GI + + + +V Sbjct: 63 RMFNADGSEAEMCGNATRCVGKYAHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVRGATV 122 Query: 119 DMGEPILDWKLIPLARSF---DKMDRDRFHIGPVN-HLFLRNPFVVSMGNPHAIFFVEDD 174 DMGEP+L LIP+ + + D RF PV VSMGNPHA+ F++ Sbjct: 123 DMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVEVGGRTYAVTAVSMGNPHAVVFMQG- 181 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL G L HP+F + N V S + +R WERG G T ACG+ ACA+ V Sbjct: 182 IDDLDLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLACGTGACAAAV 241 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 AS T R++ V++ GG L I+W ++HV+MTG A ++G I Sbjct: 242 ASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDGVYFI 289 >gi|251777802|ref|ZP_04820722.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082117|gb|EES48007.1| diaminopimelate epimerase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 273 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + I+ C + + D ++++ +++S A + Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCNRHFGIGADGLVIVRKSKNSS--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 IIN DGS CGN +RC +++ F G + K+ + V Sbjct: 59 VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPIETGDGIKEIELILKDENVEYVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + IPL + +D++ N + MG PH I F + Sbjct: 119 YMGKPSFNGSDIPLNNLDELIDQEIAI-----GKEKYNMTSLLMGVPHTIIFEKH---KE 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G + K +F +G N+ +V + + TWERG G T ACG+ CASVV + Sbjct: 171 YEVQEGENIEKFSLFKKGTNVDFVKVNDKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + VK GG L++E ++ V+M+G A+ +G + Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271 >gi|307322646|ref|ZP_07601980.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] gi|306891708|gb|EFN22560.1| diaminopimelate epimerase [Sinorhizobium meliloti AK83] Length = 295 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 13/280 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----ASVD 61 F KM G+ N +++D R + I + + + +Q++ I A Sbjct: 18 PFVKMHGLENYFVILDRREVAKPFAVEDIVRICSTNVGAGGEQLLTIEGPSSEGRAAGAY 77 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A +RI N DG EV +CGN RC+ L + + ET G+L + ISV +G Sbjct: 78 ATMRIFNVDGKEVGACGNATRCMAYLLLEETRTEEVVIETASGLLKCRRAGLRQISVTLG 137 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 ++W+ +P +R D + P+ L + + +GNPH +FFV+ ++ Sbjct: 138 PISVNWQQLPTSREVDTL------HIPLKSGPLSDGVALYIGNPHVVFFVDRLVHDDIPL 191 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 F + P+F EGVN+ +A V S+ L WER LT ACG+ AC + A+ Sbjct: 192 -FAPAIQNDPLFPEGVNVGVAEVIDAGSIRLAVWERPGILTKACGTGACVAAYAALKRGF 250 Query: 242 TNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V + G L IE +++ V MTG G ++ Sbjct: 251 VNSTKVKVYLPAGELQIELIEHDMVVMTGPVAFCCHGYIE 290 >gi|317130097|ref|YP_004096379.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522] gi|315475045|gb|ADU31648.1| diaminopimelate epimerase [Bacillus cellulosilyticus DSM 2522] Length = 288 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 95/286 (33%), Positives = 140/286 (48%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G+GN+ + ++ + + + +I D ++LI A D Sbjct: 1 MKFTKMHGLGNQYIFVNQFEEKLREEELVALSIEVSDVFTGIGSDGMILIGPSTVA--DL 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKE------NRDG 114 +RI N DGSE ++CGNG+RCV ++ + + S T ET+ GI+ A N Sbjct: 59 QMRIFNKDGSEAKNCGNGLRCVAKYAYDNDLVNKLSMTIETLGGIVEASVEVNEETNTVT 118 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P L+ K IPL G VSMGNPHA+FFV + Sbjct: 119 RVTVDMGVPRLEPKEIPL---LGTEKTPVIKEGIEVDNARHEMTAVSMGNPHAVFFV-NS 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + L + G + KHP F + VN+ + S + R WERG G+T ACG+ ACA+VV Sbjct: 175 IENAPLTTLGPKIEKHPRFPDSVNVEFVQQVSTREMHFRVWERGSGITQACGTGACAAVV 234 Query: 235 ASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A+ K V V + GG L I W ++ V+MTG A+ G+ Sbjct: 235 AAVLNGFSKKGEEVLVHLAGGDLHITWDKDDRVWMTGPAETICIGE 280 >gi|319940772|ref|ZP_08015112.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B] gi|319805792|gb|EFW02568.1| diaminopimelate epimerase [Sutterella wadsworthensis 3_1_45B] Length = 283 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 114/283 (40%), Gaps = 12/283 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+G GN +V+D N T I AL+ DQ++L+ + RI N Sbjct: 1 MQGAGNDFVVLDGIRQSINPTPKLIRALADRRFGIGADQVLLLEAAKHEGEPLRYRIFNN 60 Query: 70 DGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 G EV+ CGNG RC+ RF FET++G + + DG + VDMG P L Sbjct: 61 TGGEVEQCGNGARCIGRFALEAGYAAGDRVDFETMKGRICVRAEPDGRMVVDMGVPRLQP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNP-------FVVSMGNPHAIFFVEDDLYHYDL 180 +P A D R P V MGNPHA FV+ + + + Sbjct: 121 AEVPFAPEADSEMSKRCEHSADVWTIFCPPLSCDIEFTAVGMGNPHATIFVDG-VDSFPV 179 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 L +F E VN+ + +R +ERG G T ACG+ A++ + Sbjct: 180 EPVARFLQTSAIFPEDVNVGFVERIDSRTAKIRVYERGAGETLACGTGTSAAMASGCLRG 239 Query: 241 KTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + V GG + W +++ G A+ + G + + Sbjct: 240 FFDDRVEFVARGGRIACAWRGPATSLYLIGPAEVVFVGTISLD 282 >gi|11498353|ref|NP_069581.1| diaminopimelate epimerase [Archaeoglobus fulgidus DSM 4304] gi|6014912|sp|O29511|DAPF_ARCFU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2649864|gb|AAB90492.1| diaminopimelate epimerase (dapF) [Archaeoglobus fulgidus DSM 4304] Length = 280 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 118/290 (40%), Gaps = 23/290 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN ++ID + + D + + Q A D Sbjct: 3 IAFTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPSQKA--D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILV--AKENRDGSISV 118 R N DGSE CGNG+RC R++ + ET+ GIL K + V Sbjct: 61 VRFRYFNSDGSEAAMCGNGIRCFSRYVVEEGYAGERLRVETLAGILELEVKRENGWWVKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA-IFFVEDDLYH 177 DMG+P + IP + + + + + G PH +F D Sbjct: 121 DMGKPKFGREEIPAKTDVWGYEVE-------HDGRKFRIYAANTGVPHVAVFVDSLDFDI 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236 LA +F EG N++ A+ +++ +RT+ERGV T +CG+ + A + Sbjct: 174 VPLARKIRYSE---IFPEGTNVNFAK-VDGDTITVRTYERGVEGETLSCGTGSVAVAAIA 229 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 L T V V GG L IE ++ +MTG A + ++G L + ++ Sbjct: 230 NRLGLTGSKVDVVTKGGLLKIELTED-TAYMTGGASRVFDGILRLNELRY 278 >gi|150016476|ref|YP_001308730.1| diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052] gi|149902941|gb|ABR33774.1| Diaminopimelate epimerase [Clostridium beijerinckii NCIMB 8052] Length = 275 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 19/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN + I+ L D ++++ + A A + Sbjct: 1 MNFYKMQGAGNDFVFIEDFDNKIKDECLLAKKLCDRHFGIGADGLVIVRKSELA--HARM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI------LVAKENRDGSISV 118 IIN DGS CGN +RC +++ F G ++ + + V Sbjct: 59 VIINADGSRANMCGNAIRCFGKYVYEHKIATGDKFSVETGDGIKEIEIILENENVKYVRV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG P + IPL + + + + + + +G PH I F D Y Sbjct: 119 YMGNPSYNGCDIPLN-NLESLIEKEIAVDDKKYKM----TTLLLGVPHTIIFESD--REY 171 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ G+ + K +FSEG N++ ++ + + TWERG G T ACG+ ASVV + Sbjct: 172 NVIQEGSKIEKLDIFSEGSNVNFVKIVDDTHIRVNTWERGAGATLACGTGCSASVVVAKK 231 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L ++ + VK GG L+IE + V+M G A+ ++G+L + Sbjct: 232 LGLVNKDKEIFVKAPGGELIIEVLGQD-VYMKGPAEVVFKGELSL 275 >gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1] gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1] Length = 287 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 20/287 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F+KM GIGN +ID + + D ++ + A D Sbjct: 7 LKFSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFVVPSDVA--D 64 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGS---- 115 R+ N DGSE + CGNG+RC F+ +++ T ET GI + + Sbjct: 65 IGYRMFNPDGSEAEMCGNGIRCFGDFVYRNKIVEKETMTVETKSGIKTIEITVEDGEPVL 124 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG+ IP+ D + V++GNPHAI FV++ + Sbjct: 125 FKVNMGKSTFKVPEIPMIADTD----EFVDGDLDVIDTTFKATCVNVGNPHAILFVDN-V 179 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 D+ +G + H +F E +N+ V S +RTWERG G+T ACG+ A ++ +A Sbjct: 180 DDIDIDKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACGTGATSTALA 239 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE-WHDNNHV--FMTGEAKKEWEGKL 279 L ++ V + + GG L E + ++ + FM G A + ++ Sbjct: 240 GVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPAALVFNAEI 286 >gi|206901683|ref|YP_002250495.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12] gi|206740786|gb|ACI19844.1| diaminopimelate epimerase [Dictyoglomus thermophilum H-6-12] Length = 286 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 15/283 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 MV+F K G+GN +V D + +T I + D I+++ + + Sbjct: 1 MVEFVKSHGLGNDYIVFDKTQINFPLTEKNIRLICDRNRGVGSDGILVLEKI--NNQEFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSI 116 +RI N DGSE + GNG+R + + K F T+ G + A R +I Sbjct: 59 VRIFNPDGSEAEKSGNGIRILAKYIYDYKYTTEKEFFIYTLGGKVKASVIEEQNGRAKTI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ IP+A ++ + I + +S+GNPH +FFV+ ++ Sbjct: 119 EVEMGKVTFRSSEIPVAGPEREVIDEELKING----EILKITCLSIGNPHCVFFVD-EID 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + S G + +P+F +N+ + +V +++R WERG G T A GS++CA+ A+ Sbjct: 174 EEKIKSLGPKIENNPIFPNRINVQMVKVLDSNKIEIRIWERGAGYTLASGSSSCAAASAA 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V V M GG L I + + V + G ++ ++G+L Sbjct: 234 YRKGLVNNQVEVIMPGGTLHIRINPDWSVNLIGPVEEVFKGEL 276 >gi|319945229|ref|ZP_08019491.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599] gi|319741799|gb|EFV94224.1| diaminopimelate epimerase [Lautropia mirabilis ATCC 51599] Length = 309 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 93/296 (31%), Positives = 132/296 (44%), Gaps = 20/296 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + KM G GN +VID ++ L+ DQI+++ Sbjct: 3 LRLTKMHGAGNDFVVIDATRGMPPVSLAQWRWLADRHVGVGADQILIVERPTAEQVAAAG 62 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG 114 +D RIIN DG EV+ CGNG RC VRF+ + R T GI+ + DG Sbjct: 63 PEGLDFVYRIINADGIEVEQCGNGARCFVRFVHEQGLTDRDRIRVLTRGGIISPRLLPDG 122 Query: 115 SISVDMGEPILDWKLIPLA-------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + V+MGEP D +P + + M +F R +VSMGNPHA Sbjct: 123 GVEVNMGEPSFDPGRLPFSTRGLVPRQQGQAMLWPLALEASPGEVFTREVALVSMGNPHA 182 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + VE D+ + + G L+ HP F VN +V S + LR +ERG G T ACG+ Sbjct: 183 VQVVE-DVKQAPVQTEGRLIELHPRFPARVNAGFMQVLSRGEIALRVFERGAGETLACGT 241 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIK 282 ACA+ VA + V V+ LGG L I W VF+ G A + ++++ Sbjct: 242 GACAAAVAGMQQGLLDHEVRVRALGGTLTIRWEGPGSPVFLAGPAVTVFSTEVELP 297 >gi|21241405|ref|NP_640987.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str. 306] gi|21106739|gb|AAM35523.1| diaminopimelate epimerase [Xanthomonas axonopodis pv. citri str. 306] Length = 270 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 117/274 (42%), Gaps = 9/274 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D+R + L+ DQI+ I + A I N Sbjct: 1 MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGIGCDQILTIEAPRSEGAAAAYGIWNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGS + CGNG RCV +L + + F ++ + +V MG P + Sbjct: 61 DGSAARQCGNGARCVAAWLVRDGTAQGERFIIDSPATAHAVERLDGDRYAVAMGVPQFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPLA R H VSMGNPHA+ V + + G LL Sbjct: 121 TQIPLAG----FAHARDEYALPVHGETVRFGAVSMGNPHAVVEVGR-VDAAPVERVGALL 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 ++ F + VN+ A+V + LR +ERGVG T ACGS ACA+ + R V Sbjct: 176 QQNAAFPDSVNVGFAQVVDPVHVRLRVFERGVGETLACGSGACAAAAVLMQRGRVERDVQ 235 Query: 248 VKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLD 280 V + GG L I W + V M+G A ++G+ + Sbjct: 236 VSLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWN 269 >gi|332880482|ref|ZP_08448156.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681470|gb|EGJ54393.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 268 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 20/279 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + ++ S D ++LI + D + Sbjct: 3 IEFTKMHGAGNDYIYVNTLKYPLVQPETFAKEWSKPHTGIGSDGLVLIGPSEKG--DFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGN RCV + +K ET+ GI + G + Sbjct: 61 RIFNADGSEAMMCGNASRCVGKYLYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSVTV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + I N R V+MGNPH + F D+ DL S Sbjct: 121 DMGAPRDIRTV-------------DLGNGYLFREGTTVNMGNPHLVIFT-HDVSAIDLLS 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP+F VN+ A++ ++ +R WERG G+T ACG+ ACA+ VA+ + Sbjct: 167 EGPSMEHHPLFPNRVNVEFAQILPDGNIRMRVWERGSGITQACGTGACATAVAAAFTGRG 226 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + M GG L IE+ N+ + MTG A K ++G ++ Sbjct: 227 KGKTDIIMDGGTLTIEYQPQNDRILMTGPATKVFDGTIN 265 >gi|182625660|ref|ZP_02953429.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721] gi|177909062|gb|EDT71537.1| diaminopimelate epimerase [Clostridium perfringens D str. JGS1721] Length = 272 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 20/281 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI+ I D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + K + + G L ++++ SI+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIEKDKVKSIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP D + + MG PH I F Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 FG + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 170 KYPIEFGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269 >gi|255004774|ref|ZP_05279575.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Virginia] Length = 265 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 128/275 (46%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF KM N ++ID R + D DQ++ I D D I Sbjct: 1 MDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P V+MGN H +FFV + L G Sbjct: 119 AWQDIPIAHECDTLKVPLLV------PKYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265 >gi|255003649|ref|ZP_05278613.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Puerto Rico] Length = 265 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF KM N ++ID R + D DQ++ I D D I Sbjct: 1 MDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 119 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 231 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 232 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 265 >gi|75908333|ref|YP_322629.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] gi|75702058|gb|ABA21734.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413] Length = 285 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 127/278 (45%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +GN LVI+ + ++T + I + D +L+ + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFSLTPEKIKIICHRNFGIGSDG-ILLGPLASTKAQFAL 59 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI N DGSE + GNG+R + + F+ ET+ G++ + G + V+MG Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDENPFSIETVGGLVESAIKDAGKTVQVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ +++ + + ++GNPH + ++ D+ Sbjct: 120 KVSFWSRDIPVVGDDREVIQEKIFLD----EGIFTFCAATIGNPHCVILLD-DINADVAR 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +FG + P+F N+ +V ++ + WERG G T A GS++ A+ + L Sbjct: 175 NFGPIFEVFPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V+M GG +LI+ D+ H+ MTG K +G+L Sbjct: 235 CDSEIIVQMPGGDILIQIKDDFHISMTGFVTKVAQGEL 272 >gi|126180100|ref|YP_001048065.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1] gi|125862894|gb|ABN58083.1| diaminopimelate epimerase [Methanoculleus marisnigri JR1] Length = 272 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 26/284 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 + F K++G GN ++ID I D A D ++ + A Sbjct: 3 IAFTKLQGNGNDFVLIDEHDGEV-IPEDMKGAFAALFCDRRFGIGADGVLFLQASDKA-- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGS---I 116 D +R++ D SE CGNG+RC+ ++ K + ET GI+ Sbjct: 60 DVRMRLLQPDESEAAMCGNGIRCLAKYAYDAGYVKESCSVETGAGIVQVSAGYADDEFTA 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++ M P + IP A + + + + + G PHA+ FV+ ++ Sbjct: 120 TITMPAPAFERSAIPAAGNGEYK----------EEIRNFTVYAANTGVPHAVVFVK-EIG 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 D+A+ G + HP F EG N++ +++ +RT+ERGV T +CG+ A AS Sbjct: 169 AVDIAAVGPAIRNHPSFVEGANVNFVEEAGNDTIRIRTFERGVEGETESCGTGATASAAV 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L K V V+ GG L+I + + V M G A+ + G + Sbjct: 229 AHHLGKVGDTVRVETKGGPLVIRFGE--TVTMEGPAETVFSGVI 270 >gi|18310828|ref|NP_562762.1| diaminopimelate epimerase [Clostridium perfringens str. 13] gi|20141431|sp|Q46185|DAPF_CLOPE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|18145510|dbj|BAB81552.1| diaminopimelate epimerase [Clostridium perfringens str. 13] Length = 272 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 20/281 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI+ I D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + K + + G L + ++ +I+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP D + + MG PH I F Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 170 KYPIECGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269 >gi|168206100|ref|ZP_02632105.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987] gi|168214420|ref|ZP_02640045.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969] gi|169343508|ref|ZP_02864507.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495] gi|169298068|gb|EDS80158.1| diaminopimelate epimerase [Clostridium perfringens C str. JGS1495] gi|170662468|gb|EDT15151.1| diaminopimelate epimerase [Clostridium perfringens E str. JGS1987] gi|170714130|gb|EDT26312.1| diaminopimelate epimerase [Clostridium perfringens CPE str. F4969] Length = 272 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 20/281 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI+ I D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + K + + G L + ++ SI+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP D + + MG PH I F Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 170 KYPIECGREIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269 >gi|110799448|ref|YP_696529.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124] gi|168210791|ref|ZP_02636416.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC 3626] gi|168215474|ref|ZP_02641099.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239] gi|110674095|gb|ABG83082.1| diaminopimelate epimerase [Clostridium perfringens ATCC 13124] gi|170711105|gb|EDT23287.1| diaminopimelate epimerase [Clostridium perfringens B str. ATCC 3626] gi|182382188|gb|EDT79667.1| diaminopimelate epimerase [Clostridium perfringens NCTC 8239] Length = 272 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 121/281 (43%), Gaps = 20/281 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI+ I D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + K + + G L + ++ SI+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKSIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP D + + MG PH I F Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 170 KYPIECGRDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269 >gi|110803272|ref|YP_699129.1| diaminopimelate epimerase [Clostridium perfringens SM101] gi|110683773|gb|ABG87143.1| diaminopimelate epimerase [Clostridium perfringens SM101] Length = 272 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 20/281 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+KM G GN +VI+ I D I+++ ++ + D Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVR--KNENCDIE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG------ILVAKENRDGSIS 117 + IIN DGS CGNG+RC +++ + K + + G L + ++ +I+ Sbjct: 59 MVIINSDGSYAAMCGNGIRCFAKYVYEKGIVKKDVLDVLTGDGVKRIFLEIENDKVKTIN 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG K IP D + + MG PH I F Sbjct: 119 VNMGFGDFKPKNIPA-----LCDEEIIEKKVSVGNGNFEITSLLMGVPHTIIFE----EE 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G + K+ +F +G N++ +V ++++RTWERG G T ACG+ CASV+A+ Sbjct: 170 KYPIECGKDIEKYELFPQGTNVNFCKVIDRNTMEVRTWERGAGPTLACGTGNCASVIAAN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L ++ V V + GG L + D+ V M G A +G Sbjct: 230 KLGLVDKEVKVIVPGGELKVNIEDDG-VKMIGNASFICDGT 269 >gi|298209117|ref|YP_003717296.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559] gi|83849044|gb|EAP86913.1| Diaminopimelate epimerase [Croceibacter atlanticus HTCC2559] Length = 261 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 35/283 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V+F K +G GN ++ID R + N T D ++ + + D Sbjct: 3 VEFYKYQGTGNDFVIIDNRRYNLSKNDTKTIKLLCDRRFGIGADGLIFLENSGIEGEDFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + T F I G A Sbjct: 63 MVYFNSDGNESTMCGNGGRCLVSFAHYLNIFEKETLFSAIDGQHEASITNG--------- 113 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 N L N ++ G+PH + D L Sbjct: 114 -----------------VVSLKMQDVSNIETLENALYLNTGSPHYVTLTSDILNKNIKVD 156 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + EG N++ + +RT+ERGV T +CG+ A +A L K Sbjct: 157 GAAIRYNDRFKKEGTNVNFVEPITANLYRVRTYERGVEDETLSCGTGVTAVAIAMHALSK 216 Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 T+ +V + + GG L + ++ NN +V++TG A++ ++G++ Sbjct: 217 TDKNSVDLIVQGGSLNVAFNTNNGTYTNVWLTGPAEQVFKGEV 259 >gi|188589635|ref|YP_001921574.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska E43] gi|188499916|gb|ACD53052.1| diaminopimelate epimerase [Clostridium botulinum E3 str. Alaska E43] Length = 273 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 77/282 (27%), Positives = 124/282 (43%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + I+ C + A D ++++ + +S A + Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSKKSS--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGIL----VAKENRDGSISV 118 IIN DGS CGN +RC +++ F+ ET GI + K+ + V Sbjct: 59 VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFSIETEDGIKEIELILKDENVEYVKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + IPL + +D++ N + MG PH I F Sbjct: 119 YMGKPSFNGSDIPLNNLDELIDQEVAI-----GKEKYNMTSLLMGVPHTIIFENH---KE 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G + K +F +G N+ +V + + + TWERG G T ACG+ CASVV + Sbjct: 171 YEVQEGENIEKFSLFKKGTNVDFVKVNNKNHIRVNTWERGAGATLACGTGCCASVVVAKK 230 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + VK GG L++E ++ V+M+G A+ +G + Sbjct: 231 LGYVSEEKIFVKAPGGNLIVEVLEDG-VYMSGPAEFICKGNI 271 >gi|223940625|ref|ZP_03632468.1| Diaminopimelate epimerase [bacterium Ellin514] gi|223890706|gb|EEF57224.1| Diaminopimelate epimerase [bacterium Ellin514] Length = 269 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 25/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +++D R + + L D IML+ D Sbjct: 3 LEFNKMNGAGNDFVLVDNRERKVKLRPEQAVQLCHRQRGIGADGIMLLVPCVSGKADWAW 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS + CGNG RC RF+ FTFET GI+ A Sbjct: 63 DFYNSDGSVAEMCGNGARCFARFVQKLTGINSQFTFETGAGIITASFQG----------- 111 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + I L + D ++ + ++ G PHA+ FV D L+ Sbjct: 112 --ERVTIGLTKPRDLRLNEQVTLSVGAQPI----HSLNTGVPHAVLFVPDADKAMVLSLG 165 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + +G N++ + ++ +RT+ERGV T ACG+ AS + S L+ Sbjct: 166 QEIRRHAHFAPKGTNVNFVQQLGNGAIRVRTFERGVEGETLACGTGVTASALISAELNGF 225 Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + V++ GG L + + +N V +TG A +EGK+ I Sbjct: 226 KSPIQVQVQGGDLLEVSFKENGGHFEDVKLTGPADFVFEGKVTI 269 >gi|119356065|ref|YP_910709.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266] gi|119353414|gb|ABL64285.1| diaminopimelate epimerase [Chlorobium phaeobacteroides DSM 266] Length = 266 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 31/286 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F+K+ G GN ++ID R ++T INAL D ++L+ D + Sbjct: 3 INFSKLSGAGNDFIIIDNRALAIHLTQPQINALCTRRTGVGADGLILVEPSLH--CDFTM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG CGNG RC V F + + + F+FE A+ ++ + M Sbjct: 61 KYFNADGFPGSMCGNGGRCAVYFAFMQGVTSAEPEHFSFEANSNRYDAEVTNSETVRLHM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + V+ G+PH + F +D Sbjct: 121 LDAR--------------------DFRYHMEIEGFACTFVNTGSPHVVIFADDINAINVA 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + F EG N++ +TS S+ LRT+ERGV T ACG+ A A+ + S L Sbjct: 161 EKGVAIRRNTDFFPEGTNVNFVEITSPSSIALRTFERGVEEETLACGTGAVAAAIISRKL 220 Query: 240 HK-TNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 K +V V + G L + + +N ++ +TG AK ++G + I Sbjct: 221 GKILPNSVKVTVKSGDMLEVSFSENMQNITLTGPAKIVYQGSVTIP 266 >gi|56417293|ref|YP_154367.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries] gi|222475657|ref|YP_002564074.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida] gi|56388525|gb|AAV87112.1| diaminopimelate epimerase [Anaplasma marginale str. St. Maries] gi|222419795|gb|ACM49818.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Florida] Length = 277 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 VDF KM N ++ID R + D DQ++ I D D I Sbjct: 13 VDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 70 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 71 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 130 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 131 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 183 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 184 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 243 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 244 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 277 >gi|210622382|ref|ZP_03293135.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275] gi|210154264|gb|EEA85270.1| hypothetical protein CLOHIR_01083 [Clostridium hiranonis DSM 13275] Length = 277 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 129/286 (45%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMR---GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R +S A+ + + D ++++ + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRNDGKSPSEYSSLALQVCNRRMSVGADGLLVVKNSNVA--DI 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG-----S 115 + N DGS CGNG+RC RF+ + + F +T+ GI N + Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCRFVYDNHIVNEREFDVDTLAGIKHVTVNTSDLGDVIN 118 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I VDMGE IP+A +K ++ HI + V +F E DL Sbjct: 119 IKVDMGEGSFKTSDIPMATDKEKFIEEKVHILDRDFTMTSMLMGV---PHTIVFVDEFDL 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +G + +F E N++ +V ++++ TWERG G T CG+ A+ V Sbjct: 176 E--MIEKYGPAIENCDLFPEKTNVNFVKVRDKYNINVYTWERGCGYTLGCGTGMTAAAVV 233 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L KT ++++V GG + I+ + VFMTG A K EG L++ Sbjct: 234 CNYLEKTEKSMNVTSKGGTVKIDI--GDKVFMTGPAVKICEGYLEV 277 >gi|88603562|ref|YP_503740.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1] gi|88189024|gb|ABD42021.1| diaminopimelate epimerase [Methanospirillum hungatei JF-1] Length = 274 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 115/287 (40%), Gaps = 26/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN ++ID A D ++ + D Sbjct: 3 IPFVKLHGNGNDFILIDEYAGEKIPDDMKGHFAAVYCDRKFGIGGDGVLFLLKSNDG--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDG----SI 116 +R+ D SE + CGNG+RC+ ++ K T +T+ G ++ + D Sbjct: 60 IRMRLFQPDESEAEMCGNGIRCLAKYAFDAGYVKSPCTIQTLAGPVMVRMEYDEDGDFMA 119 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+M PI + IP D + F V+ G PHA+ FV DL Sbjct: 120 EVEMTPPIYESPGIPAKGKGDF----------HEIINGYEVFAVNTGVPHAVIFVR-DLD 168 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 DL + F G N++ +T S+ +RT+ERGV T +CG+ A AS Sbjct: 169 SLDLIKMAPPIRHSQFFPSGANVNFVEITGENSIQIRTFERGVEAETLSCGTGATASAAI 228 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L KT V V+ +GG L I D FM G A + G L + Sbjct: 229 AYRLSKTGPVVEVETIGGPLTITIKDG--AFMKGPADTVFTGMLHLD 273 >gi|330997536|ref|ZP_08321383.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841] gi|329570394|gb|EGG52125.1| diaminopimelate epimerase [Paraprevotella xylaniphila YIT 11841] Length = 268 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 20/279 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN + ++ + S D ++LI + D + Sbjct: 3 IEFTKMQGAGNDYIYVNTLKYPVSHPEALAKEWSKPHTGIGSDGLVLIGPSETG--DFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGN RCV + +K ET+ GI + G + Sbjct: 61 RIFNADGSEAMMCGNASRCVGKYVYEYGLTDKKEIALETLSGIKTLYLHLQGENVDSVTV 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I N R V+MGNPH + F D+ DL S Sbjct: 121 DMGAPCDIRTV-------------DLGNGYLFREGTAVNMGNPHLVIFT-HDVSAIDLLS 166 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + HP+F VN+ A+V ++ +R WERG G+T ACG+ ACA+ VA+ + Sbjct: 167 EGPAMEHHPLFPNRVNVEFAQVLPDGNVRMRVWERGSGITQACGTGACATAVAAAFTGRG 226 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 + M GG L IE+ N+ + MTG A K ++G ++ Sbjct: 227 KGKTDIIMDGGTLTIEYEPQNDRILMTGPATKVFDGTIN 265 >gi|284161385|ref|YP_003400008.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631] gi|284011382|gb|ADB57335.1| diaminopimelate epimerase [Archaeoglobus profundus DSM 5631] Length = 279 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 77/279 (27%), Positives = 121/279 (43%), Gaps = 15/279 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVD 61 ++F KM G GN ++ID DN S+ + D + + A D Sbjct: 1 MEFVKMHGNGNDFVLIDEFESVKVPDNRKSEFVRVVCDRRFGVGGDGAIFVQKSDIA--D 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 A N DGS + CGNG+RC R++ R K + V K + + Sbjct: 59 AKFVFYNSDGSRAEMCGNGIRCFARYIVERGYAKPGVVKVETLAGVLKLDVWFDEMWWIR 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + K + + + F I + V+ G PHA+ FV+D + + Sbjct: 119 VNMGRPKFGKDVPALKDVWGEVFEIDGRKFE----VYAVNTGVPHAVIFVDDFDFDFY-- 172 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +F EG N++ A+V S S+ +RT+ERGV T +CG+ +CA V L Sbjct: 173 KVAREIRYSKLFPEGTNVNFAKVLSRNSVFVRTYERGVEDETLSCGTGSCAVAVVGNRLG 232 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ V V+ GG L IE N+ ++M G A K +EG+L Sbjct: 233 ILDKVVEVQTKGGILKIEV--NDEIYMNGTAAKVFEGRL 269 >gi|332290831|ref|YP_004429440.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5] gi|332168917|gb|AEE18172.1| diaminopimelate epimerase [Krokinobacter diaphorus 4H-3-7-5] Length = 258 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 39/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+K +G GN ++ID R + T D +ML+ + A D Sbjct: 3 IPFSKYQGTGNDFVIIDNRTQYFPKDDTKLISKLCDRKFGIGADGLMLLENHPSA--DFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + + + TFE I G+ A Sbjct: 61 MVYYNADGNESSMCGNGGRCLVAFAKALSIIENNATFEAIDGLHEA-------------- 106 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 S + + G+PH I V+ D+ ++ + Sbjct: 107 ------------SIEGDIVQLKMQDVSKIKKEPTYTFLDTGSPHHIAMVD-DVEKVNVKA 153 Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G L G N++ + +RT+ERGV T +CG+ A +A+ Sbjct: 154 EGAALRYGSLYGEAGSNINFVQQLDNAHFAVRTYERGVEDETLSCGTGVTAVAIAAHTNG 213 Query: 241 K-TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 T+ V++ + GG L +++ N ++++ G A ++G+ Sbjct: 214 LTTSNKVALDVQGGKLSVQFEKTNDGYSNIYLIGPATFVFKGEW 257 >gi|89890574|ref|ZP_01202084.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7] gi|89517489|gb|EAS20146.1| diaminopimelate epimerase [Flavobacteria bacterium BBFL7] Length = 260 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 110/285 (38%), Gaps = 37/285 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + I L D ++L+ + + D Sbjct: 4 IHFYKYQGTGNDFVMIDNRDLSFSKNDTKLIELLCDRKFGIGADGLILLENH--PTADFK 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC+VRF + + TFE I G+ AK Sbjct: 62 MVYFNADGKESTMCGNGGRCLVRFAQFLEIISQDATFEAIDGMHHAKV------------ 109 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D + + G+PH + E +L D+ Sbjct: 110 -------------IDATAISLQMSDVTEMRIENSYVYTNTGSPHHVQLTE-NLADLDVYQ 155 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G L + G N++ ++T E+ +RT+ERGV T +CG+ A +A + Sbjct: 156 EGKYLRNNIYGKTGANINFVQLTDRETFKVRTYERGVEDETLSCGTGVTAVAIAMHKTNH 215 Query: 242 TN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281 TN V ++ GG L + + ++++ G A ++G I Sbjct: 216 TNANEVKLETPGGTLKVSFEASETGYKNIWLIGPALSVFKGTFTI 260 >gi|167465423|ref|ZP_02330512.1| Diaminopimelate epimerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 249 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 17/254 (6%) Query: 36 NALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK 95 + D ++ I +++ D +RIIN DGSE + CGN +RCV +++ + Sbjct: 2 RLCNRHFGIGADGLVYILPSKES--DFMMRIINSDGSEAEQCGNAIRCVAKYVVDHGLVE 59 Query: 96 SFTFETI---------RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 E R + K+ + ++ VDMGEPIL+ IP + + + + + Sbjct: 60 HQNDEITIQTIGAGIQRVFVHKKDGKVDTVRVDMGEPILNGLDIPTTVNANPVVKYPVEV 119 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 F VSMGNPH + +V+D + +L +G LL HP+F + +N+ A V S Sbjct: 120 NGRRFQF----TAVSMGNPHCVIYVDDAV-TMNLHEWGPLLEVHPLFPKKINVEFATVQS 174 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHV 265 + + +R WERG G T ACG+ ACA++VAS + T+R ++ + GG L IEW++ +NHV Sbjct: 175 RDRVIMRVWERGAGPTLACGTGACATLVASVLNNLTDRRATISLKGGDLFIEWNEADNHV 234 Query: 266 FMTGEAKKEWEGKL 279 +MTG A + ++G+L Sbjct: 235 YMTGPAAEVFQGRL 248 >gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii] gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii] Length = 298 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 89/270 (32%), Positives = 120/270 (44%), Gaps = 15/270 (5%) Query: 21 IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +D R DAI + D ++ D +RI N DGSE + CG Sbjct: 26 VDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQ-GCDYSMRIYNSDGSEPEMCG 84 Query: 79 NGMRCVVRFLTSRMK---RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 NG+RC+ RF+ +S+ T+ G ++ + DG ++VDMG P L +P Sbjct: 85 NGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVAVDMGPPTLKGAEVPTKLP 144 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLA 188 + D V VSMGNPH + F E D + L G L Sbjct: 145 VN-ADGAVVKQPLVVDGRTWLVTCVSMGNPHCVTFGEQDAKGVIKHVNKLPLEKIGPLFE 203 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 H +F N +V S L +R WERG G T ACG+ ACA VVA+ + R V Sbjct: 204 HHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGACAVVVAAVLEGRAQRRCVV 263 Query: 249 KMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 + GG L IEW + NNHV+MTG AK + G Sbjct: 264 DLPGGPLEIEWKEANNHVYMTGPAKPVFSG 293 >gi|298373396|ref|ZP_06983385.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058] gi|298274448|gb|EFI16000.1| diaminopimelate epimerase [Bacteroidetes oral taxon 274 str. F0058] Length = 278 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 127/285 (44%), Gaps = 16/285 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN + +D R DN A+ D ++LI A D + Sbjct: 1 MKFVKMHGAGNDYVFVDCFRQQVDNPERLAVAVSDRHFGIGSDGLVLIMPSDKA--DCRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 R+ N DGSE CGN +RCV ++ + T T + + + V Sbjct: 59 RMFNADGSEGMMCGNAIRCVGKYFFENIDSTKTTITTETASGIKRLELTVVKGAVECVGV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG K +P D+ N V+SMGNPH + FV+ D+ + Sbjct: 119 DMGRADFAVKNVPFVCDEDEFIASELRADNR----TFNATVLSMGNPHCVVFVD-DVDAF 173 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ +G + +P+F E VN+ + +++ +R WERG G T ACG+ ACASV A+ Sbjct: 174 NVEHYGRAIENNPLFPERVNVEFVEIVDKDTIKMRVWERGSGCTLACGTGACASVAAAAR 233 Query: 239 LHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V++LGG L ++ + + M G A + + G ++ Sbjct: 234 NTFLPMDTEICVRLLGGDLWVKCASDYTMTMRGNAVEVFRGDYEL 278 >gi|269958317|ref|YP_003328104.1| diaminopimelate epimerase [Anaplasma centrale str. Israel] gi|269848146|gb|ACZ48790.1| diaminopimelate epimerase [Anaplasma centrale str. Israel] Length = 265 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 88/274 (32%), Positives = 129/274 (47%), Gaps = 9/274 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F KM N ++ID R D A A DQ++ I D S D I Sbjct: 1 MNFIKMHSNANDFVIIDRRNTGDAAIDYAAIA-HRKTGVGCDQVVTIDRS-DGSTDCTIT 58 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +VA++ G I V++G P L Sbjct: 59 IHNPDGSQAAMCGNAAMCVGKLLMDELGTISTSITIGDRTVVAEKVPTGRIRVNLGSPKL 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+AR D + P++ P V+MGNPH +FFV + L G Sbjct: 119 AWQDIPIARECDTLQI------PLSIPGYPQPVGVNMGNPHVVFFV-ASVKDCKLEELGP 171 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ MF + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 172 LVEHDSMFPQRTNVCVAEVVTRNQITLRVWERGTGETCSCGSGSCAALIAGVRLGATERK 231 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + M GG LL EW ++ ++ + + G L Sbjct: 232 CVITMPGGSLLTEWQESGDTVVSSGVTESFRGVL 265 >gi|254995458|ref|ZP_05277648.1| diaminopimelate epimerase (dapF) [Anaplasma marginale str. Mississippi] Length = 268 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 11/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 VDF KM N ++ID R + D DQ++ I D D I Sbjct: 4 VDFIKMHSNANDFVIIDRRSIG-EVAIDYAAIAHRKTGVGCDQVVTIDRS-DGGTDCTIT 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DGS+ CGN CV + L + S + +++A++++ G I V++G+P L Sbjct: 62 IHNPDGSQAAMCGNAAMCVGKLLMDELGTTSASITIGDRVVLAEKSKTGMILVNLGKPKL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ IP+A D + P++ P V+MGN H +FFV + L G Sbjct: 122 AWQDIPIAHECDTLKV------PLSIPGYPQPVGVNMGNTHMVFFV-ASVKDCKLEELGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 L+ +F + N+ +A V + + LR WERG G T +CGS +CA+++A L T R Sbjct: 175 LVEHDALFPQRTNVCVAEVVTRSKITLRVWERGTGETFSCGSGSCAALIAGVRLGVTERK 234 Query: 246 VSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 +V M GG LL EW + + V +G + + G L Sbjct: 235 CTVSMPGGDLLTEWQESGDTVVGSG-VTESFRGVL 268 >gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa Japonica Group] Length = 271 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 83/270 (30%), Positives = 118/270 (43%), Gaps = 13/270 (4%) Query: 20 VIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 ++D R +A + D ++ + + D +RI N DGSE + C Sbjct: 1 MVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVN-GADYTMRIFNSDGSEPEMC 59 Query: 78 GNGMRCVVRFL---TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 GNG+RC RF+ + SF T G+++ + DG + VDMG+PIL IP Sbjct: 60 GNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKL 119 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-----LYHYDLASFGNLLAK 189 + VSMGNPH + F + + L+ G Sbjct: 120 PS-TKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEH 178 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 H MF N V S L +R WERG G T ACG+ ACA VVA+ + R V Sbjct: 179 HEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVD 238 Query: 250 MLGGGLLIEWHD-NNHVFMTGEAKKEWEGK 278 + GG L IEW + +NH++MTG A+ + G Sbjct: 239 LPGGPLEIEWREDDNHIYMTGPAEAVFYGS 268 >gi|187932919|ref|YP_001886617.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B] gi|187721072|gb|ACD22293.1| diaminopimelate epimerase [Clostridium botulinum B str. Eklund 17B] Length = 273 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 123/282 (43%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + I+ C + A D ++++ +++S A + Sbjct: 1 MEFYKMHGAGNDFIFIEDFNCEIKDECNLAKKVCDRHFGIGADGLVIVRKSENSS--AKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDGSISV 118 IIN DGS CGN +RC +++ F G + ++++ I V Sbjct: 59 VIINSDGSRANMCGNAIRCFGKYVYENKIINKLKFPVETGDGIKEIELILRDDKVEYIKV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+P + + I L + +D++ N + MG PH I F Sbjct: 119 YMGKPSFNGRDISLNNLEELIDKEVVI-----DKEKYNMTSLLMGVPHTIIFER---DKE 170 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G + K +F EG N+ +V + + TWERG G T ACG+ CASVV + Sbjct: 171 YEVQEGEKIEKFSLFKEGTNVDFVKVNDENHIRVNTWERGAGATLACGTGCCASVVVAKK 230 Query: 239 LHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L N + VK GG L+IE ++ V+M+G A+ +G + Sbjct: 231 LGYVNGENIFVKAPGGNLIIEVLEDG-VYMSGPAEFICKGNI 271 >gi|194337676|ref|YP_002019470.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1] gi|194310153|gb|ACF44853.1| Diaminopimelate epimerase [Pelodictyon phaeoclathratiforme BU-1] Length = 268 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 81/287 (28%), Positives = 128/287 (44%), Gaps = 33/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +VID R ++T IN L D ++LI A+ + Sbjct: 3 ITFTKLSGAGNDFIVIDNRALAIHLTPLQINKLCTRRTGIGADGLILIEPS--ATFSFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRDGSISVDM 120 + N DG CGNG RC V F + ++TFE A + ++ + M Sbjct: 61 KYHNADGFLGSMCGNGGRCAVYFAFTIGIPAASGNAYTFEANGNRYDAWVLGEENVKLKM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + L F ++ G+PHAI ++ DL D+ Sbjct: 121 LAPQGFKENLDLEGE--------------------QCFALNTGSPHAIIYIS-DLDAVDV 159 Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G+ + F +G N++ +TS SL LRT+ERGV T ACG+ A A+ + S Sbjct: 160 NKKGSAIRHRTDFFPDGTNVNFIEITSPNSLALRTFERGVEEETLACGTGAVAAALMSHK 219 Query: 239 LHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 L K + V V + G L +E++++ + VF++G AK +EG I+ Sbjct: 220 LGKISSTTVQVTVKSGDTLEVEFNESMDEVFLSGPAKIIYEGSFTIE 266 >gi|154687329|ref|YP_001422490.1| diaminopimelate epimerase [Bacillus amyloliquefaciens FZB42] gi|166224240|sp|A7Z8D3|DAPF_BACA2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|154353180|gb|ABS75259.1| DapF [Bacillus amyloliquefaciens FZB42] Length = 284 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + A+ S D ++LI + A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSIHTGIGSDGMILICPSEKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ET+ G++ A D ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITEDNGIVREVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K +P+ + D+ D + L + VSMGNPH +F V D+ Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTIDETFVFGETEL---SGTAVSMGNPHIVFPV-ADINQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EGVN+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + NR ++V + GG L+I W DN HV MTG A+ G + Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284 >gi|238064056|ref|ZP_04608765.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] gi|237885867|gb|EEP74695.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] Length = 306 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 77/284 (27%), Positives = 120/284 (42%), Gaps = 15/284 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNIT-SDAINALSTDDNTHFDQIML--IHDFQDASVD 61 M F K + +GN +VID R T DA+ + D ++ I AS Sbjct: 1 MTHFTKYQALGNDYVVIDPRDVAFEPTGQDALLLCDRNFGIGADGVLYGPIGPV-HASRP 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE--NRDGSIS 117 +RI N DGSE + GNG+R + +R + FT T+ G + G +S Sbjct: 60 VQLRIFNSDGSECEKSGNGIRIFALHVAARHLPGVREFTVRTLSGDSSVRIVDQPAGVVS 119 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MGEP + +P+ + +++GNPHA+ E Sbjct: 120 VGMGEPCFEAAAVPMLGITGLAVEQPLLVDGRQ----LTVTALNLGNPHAVVLTEH-PTR 174 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G L+A+H F N+ RV ++ + WERG G T A GS+ CA+ + Sbjct: 175 ELACALGPLIAEHERFPTRTNVQFLRVLDRRTIQIEVWERGAGYTLASGSSGCAATAVAH 234 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + + ++V+M GG + + + V MTG A+ G L Sbjct: 235 RLGQVDTGAEITVRMAGGEIGVTVAPDGTVTMTGSAEHVLSGTL 278 >gi|254976182|ref|ZP_05272654.1| diaminopimelate epimerase [Clostridium difficile QCD-66c26] gi|255093571|ref|ZP_05323049.1| diaminopimelate epimerase [Clostridium difficile CIP 107932] gi|255315316|ref|ZP_05356899.1| diaminopimelate epimerase [Clostridium difficile QCD-76w55] gi|255517983|ref|ZP_05385659.1| diaminopimelate epimerase [Clostridium difficile QCD-97b34] gi|255651099|ref|ZP_05398001.1| diaminopimelate epimerase [Clostridium difficile QCD-37x79] gi|260684164|ref|YP_003215449.1| diaminopimelate epimerase [Clostridium difficile CD196] gi|260687823|ref|YP_003218957.1| diaminopimelate epimerase [Clostridium difficile R20291] gi|306520950|ref|ZP_07407297.1| diaminopimelate epimerase [Clostridium difficile QCD-32g58] gi|260210327|emb|CBA64658.1| diaminopimelate epimerase [Clostridium difficile CD196] gi|260213840|emb|CBE05832.1| diaminopimelate epimerase [Clostridium difficile R20291] Length = 276 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N I Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P+ + ++ ++ + V + E D+ Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSMLMGV---PHTVVIVDELDVD 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 176 D--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGVLEV 276 >gi|120434983|ref|YP_860669.1| diaminopimelate epimerase [Gramella forsetii KT0803] gi|117577133|emb|CAL65602.1| diaminopimelate epimerase [Gramella forsetii KT0803] Length = 262 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 62/285 (21%), Positives = 111/285 (38%), Gaps = 38/285 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + + D ++L+ + +D D Sbjct: 3 LKFYKYQGTGNDFVMIDNRDKEVSKNDTKLINHLCDRKFGIGADGLILLENSEDPEDDFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F K F I G+ A Sbjct: 63 MVYFNADGNESSMCGNGGRCLVAFANFLGIIKDSARFTAIDGVHKA-------------- 108 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 S + + + + G+PH I F E ++ D+ Sbjct: 109 ------------SIEGDVVSLKMQNVESISENEDFIFLDTGSPHHILFTE-NVNKVDIKK 155 Query: 183 FGNLLAKHPMFS--EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G+ + + G N++ + ++ +RT+ERGV T +CG+ A +A+ Sbjct: 156 EGSAIRYSERYKANNGTNVNFVEAIAKDTFSVRTYERGVEDETLSCGTGVTAVALAAFKS 215 Query: 240 HKTN-RAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 KTN V + GG L + + + V+++G A+ ++G++ Sbjct: 216 SKTNSNKVKLVTPGGKLSVSFKETEKGFSDVWLSGPAEFVFKGEI 260 >gi|291459953|ref|ZP_06599343.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417294|gb|EFE91013.1| diaminopimelate epimerase [Oribacterium sp. oral taxon 078 str. F0262] Length = 276 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 18/284 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN + +D + +S D ++LI DA++ Sbjct: 1 MRFTKMQGCGNDYIYVDCFSERVERPEELAREISDRHFGVGGDGLILIERS--GRADAYM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DGSE CGNG+RC ++L V + + G + + Sbjct: 59 HMFNQDGSEGNMCGNGIRCTAKYLYEHG------LIPKERREVLIDTKSGIRKLSLLLED 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYH 177 K + + ++ + V+ L L + + +GNPHA++F+ED+ Sbjct: 113 GKVKEVTVDMGEARLTSELPERITVSGLPL-SFIGIDVGNPHAVYFLEDNPALKERGFSA 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 DL+ G +H F E VN V S L+ R +ERG G T ACG+ A A+V A Sbjct: 172 LDLSRLGEAFERHERFPERVNSEFIEVLSPSELNFRVYERGSGETFACGTGATAAVAAGI 231 Query: 238 CLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLD 280 K + V + +LGG L I + + H +MTG A++ + G+ Sbjct: 232 LSGKLSDEVRLHLLGGDLTIRYERSDGHYYMTGPAEEVFSGEWK 275 >gi|328554918|gb|AEB25410.1| diaminopimelate epimerase [Bacillus amyloliquefaciens TA208] Length = 284 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + A+ S D ++LI + A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVHTGIGSDGMILICPSEKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ET+ G++ A D ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVREVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K +P+ + ++ + + L + VSMGNPH +F V D+ Sbjct: 123 VDMGEPRLTKKELPMLGNEEERTINETFVFGETEL---SGTAVSMGNPHIVFPV-ADISQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EG+N+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + NR ++V + GG L+I W DN HV MTG A+ G + Sbjct: 239 LNGVSERNREITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284 >gi|255038835|ref|YP_003089456.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053] gi|254951591|gb|ACT96291.1| diaminopimelate epimerase [Dyadobacter fermentans DSM 18053] Length = 259 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 64/286 (22%), Positives = 119/286 (41%), Gaps = 39/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K +G GN +++D R ++ + I ++ D ++L+ + + D + Sbjct: 3 IPFYKYQGTGNDFVMVDDRNLQFPVSKELIASICHRRFGVGADGLILLQNAE--GYDFRM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEP 123 N DG E CGNG RCVVRF T F + G A Sbjct: 61 VYFNADGGEGSMCGNGGRCVVRFANDLGLFDGNTKFIAVDGEHEATVTG----------- 109 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++I L S ++ G+PH + +V+ D++ D+ + Sbjct: 110 ----EVIRLKMS-----------NVNGVEQYEEYDFMNTGSPHYVTYVD-DIHEADVVNI 153 Query: 184 GNLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G+ + ++ G N++ V L +RT+ERGV T +CG+ A +++ Sbjct: 154 GSEIRYGSVYGPKGGTNVNFVEVIEDNHLSVRTYERGVEDETFSCGTGVTACALSAHLRK 213 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281 V+V+ +GG L +E+ + +++ G A + +EG L++ Sbjct: 214 GWPSPVTVETIGGTLAVEYQETGEGQFKDIYLIGPAVRVFEGSLNV 259 >gi|289549057|ref|YP_003474045.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484] gi|289182674|gb|ADC89918.1| diaminopimelate epimerase [Thermocrinis albus DSM 14484] Length = 278 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 117/289 (40%), Gaps = 32/289 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALSTDDNTHFDQIMLIHDFQ 56 + F+K+ GN +V+D R ++ + + D ++LI Sbjct: 1 MRFSKLHASGNDFVVLDNRDGKVYSFVNDLRLDMKDFVVKVCAFHTGVGADGLILIESPD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGS 115 D + N DGS + CGNG RC VRF R + FET+ GI+ A+ G Sbjct: 61 DPKNHFKWQFFNSDGSVAEMCGNGSRCAVRFAYERGIAGQEVRFETLAGIIKAEVLEKGR 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + D++ + L +++ ++ G PH + VE ++ Sbjct: 121 RVKVLLTKPKDYRDVTLDVKGTRLE----------------GSFINTGVPHFVVRVE-EI 163 Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233 D+ S G + HP +G N++ +V + +RT+ERGV T ACG+ A A Sbjct: 164 DSLDVVSLGRAVRFHPAFEPKGTNVNFLQVVGENKIKVRTYERGVEGETLACGTGATACA 223 Query: 234 VASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 + S V V GG L I + + V++ G ++G+L Sbjct: 224 IVSYLKGWVKGSPVDVFTKGGDLLRIHFLPDLQEVYLEGPVVWVFDGEL 272 >gi|126663407|ref|ZP_01734405.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38] gi|126625065|gb|EAZ95755.1| diaminopimelate epimerase [Flavobacteria bacterium BAL38] Length = 262 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 36/286 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R T+ D ++L+ + D Sbjct: 3 ISFYKYQGTGNDFVMIDNRSEFFPKKDTNLIKQLCDRRFGIGGDGLILLENH--PQYDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + FE + G A + G +++ M Sbjct: 61 MVYYNSDGNESSMCGNGGRCLVAFAKQMGVVENKAEFEAVDGYHYATLDAKGIVALQM-- 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + D +++ N ++ G+PH + V++ + Sbjct: 119 -----------KDVDTVNQQE------------NYTFLNTGSPHHVQLVDNLVELDIKTE 155 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + G N++ + +RT+ERGV T +CG+ A +A K Sbjct: 156 GAKIRYSDLYGDAGSNVNFVSQLENDIFAVRTYERGVEDETLSCGTGVTAVAIAMHQTGK 215 Query: 242 TNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + + + GG L +++ + +VF+ G A +EGK+D+ Sbjct: 216 TSNNIIDLNVEGGKLKVQFDVDKGNYTNVFLIGPATFVFEGKIDLD 261 >gi|296449978|ref|ZP_06891742.1| diaminopimelate epimerase [Clostridium difficile NAP08] gi|296878359|ref|ZP_06902367.1| diaminopimelate epimerase [Clostridium difficile NAP07] gi|296261248|gb|EFH08079.1| diaminopimelate epimerase [Clostridium difficile NAP08] gi|296430657|gb|EFH16496.1| diaminopimelate epimerase [Clostridium difficile NAP07] Length = 285 Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 18/286 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 9 LMKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--D 66 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS---- 115 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N Sbjct: 67 VEMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINS 126 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V+MG+ K +P+ + ++ ++ + V + E D+ Sbjct: 127 IRVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSMLMGV---PHTVVIVDELDV 183 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 184 ED--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIV 241 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 242 CNLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 285 >gi|16080270|ref|NP_391097.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|221311159|ref|ZP_03593006.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|221315486|ref|ZP_03597291.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320401|ref|ZP_03601695.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324685|ref|ZP_03605979.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. SMY] gi|321312761|ref|YP_004205048.1| diaminopimelate epimerase [Bacillus subtilis BSn5] gi|6014913|sp|O32114|DAPF_BACSU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2635714|emb|CAB15207.1| diaminopimelate epimerase [Bacillus subtilis subsp. subtilis str. 168] gi|291485681|dbj|BAI86756.1| diaminopimelate epimerase [Bacillus subtilis subsp. natto BEST195] gi|320019035|gb|ADV94021.1| diaminopimelate epimerase [Bacillus subtilis BSn5] Length = 284 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 90/286 (31%), Positives = 138/286 (48%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ AI S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAIQVSSVYTGIGSDGMILICPSDQAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ++ + + + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L +P+ D + + VSMGNPH +F + D+ Sbjct: 123 VDMGEPRLTKSELPM---LDGGEEHTINETMAFGEVELTGTAVSMGNPHIVFPI-ADIEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EG+N+ + + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEQELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K N+ ++V + GG L+I W DN HV MTG A+ EG + Sbjct: 239 LNGVSKRNQDITVHLAGGDLVINWKDNGHVMMTGPAETVCEGVYFL 284 >gi|307329240|ref|ZP_07608405.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113] gi|306885139|gb|EFN16160.1| diaminopimelate epimerase [Streptomyces violaceusniger Tu 4113] Length = 310 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 26/314 (8%) Query: 1 MQSS-MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD- 57 M ++ + F K G N +++ +++ A+ + D ++ + Sbjct: 1 MSTAPRLSFLKGHGTENDFVIVPDLDGSLELSAAAVARICDRRAGIGGDGLIRVVRSSAH 60 Query: 58 -------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGI 105 + F+ N DGS + CGNG+R R+L ++ +R + Sbjct: 61 PEARAMADQAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAGLAEAGDLAVATRAGVRRV 120 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 +AK+ D + + + + + + V+MGNP Sbjct: 121 HIAKDVGDAAQPGEATAGPDGPITVVMGEATLPGPGPEAEMTVTVGEQSWPARNVNMGNP 180 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 HA+ FV+ DL + + G N+ + +R ERG G T +C Sbjct: 181 HAVAFVD-DLAQAGDLLAAPAVRPASAYPHGTNVEFVVDRGPRHVAMRVHERGSGETRSC 239 Query: 226 GSAACASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 G+ ACA +VA+ + AV+ V + GG L+I + V MTG A EG+ Sbjct: 240 GTGACAVMVAAARRDGADPAVTGHPVTYTVDVPGGRLVISERPDGTVEMTGPAVIVAEGE 299 Query: 279 LDIKTGKWIKKNED 292 LD W++ + Sbjct: 300 LDP---AWLRTDLG 310 >gi|224026132|ref|ZP_03644498.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM 18228] gi|224019368|gb|EEF77366.1| hypothetical protein BACCOPRO_02886 [Bacteroides coprophilus DSM 18228] Length = 271 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 79/279 (28%), Positives = 124/279 (44%), Gaps = 19/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 V F KM+G GN + ++ S D ++LI ++ D + Sbjct: 3 VKFTKMQGAGNDYIYVNTFLYPLEEPERLSQEWSRPHTGIGSDGLVLIGPSEEG--DFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISVDMGE 122 RI N DGSE CGN RC+ +++ + ET GI + + V+ Sbjct: 61 RIFNADGSEAMMCGNASRCIGKYVYENGLTQKTRVALETRSGIKILNLRVNDERVVESVT 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + IP + VSMGNPH + FV+ + L+ Sbjct: 121 VDMG---IPTGI---------TPVDLGEGYGYSQGIAVSMGNPHLVIFVDQ-VSDVRLSE 167 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL HP+F + VN+ A+V + +R WERG G+T ACG+ ACA+ VA+ + Sbjct: 168 VGPLLEHHPLFPDRVNVEFAQVIDGSHIRMRVWERGSGITLACGTGACATAVAAAFTGRC 227 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 R V M GG L ++W++ + H+ M G A K ++G+++ Sbjct: 228 GRESDVTMDGGTLHLQWNEADGHLLMGGPAGKVFDGEIE 266 >gi|239928535|ref|ZP_04685488.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] gi|291436861|ref|ZP_06576251.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] gi|291339756|gb|EFE66712.1| diaminopimelate epimerase [Streptomyces ghanaensis ATCC 14672] Length = 289 Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 39/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ +++ A+ AL D ++ + + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPENALDLSPAAVAALCDRRAGIGADGLLHVVRSEAHP 59 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 60 EGRAMADEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +DG ++V MG+ +L + ++ V+MGNPHA+ Sbjct: 120 IAKDGDVTVGMGKALLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H ++ + +GVN+ + LR ERG G T +CG+ A Sbjct: 164 FVD-DLAHAGDLLAPPPVSPASAYPDGVNVEFVVDRGPRHVALRVHERGAGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + +V+ V + GG L+I + + MTG A EG+++ Sbjct: 223 CAVAVATARRDGVDPSVTGTPATYTVDVPGGTLVITERPDGGIEMTGPAVIVAEGEIE-- 280 Query: 283 TGKWIKKN 290 +W++ Sbjct: 281 -AEWLENA 287 >gi|126700210|ref|YP_001089107.1| diaminopimelate epimerase [Clostridium difficile 630] gi|255101755|ref|ZP_05330732.1| diaminopimelate epimerase [Clostridium difficile QCD-63q42] gi|255307623|ref|ZP_05351794.1| diaminopimelate epimerase [Clostridium difficile ATCC 43255] gi|115251647|emb|CAJ69480.1| Diaminopimelate epimerase (DAP epimerase) [Clostridium difficile] Length = 276 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N I Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P+ + ++ ++ + V + E D+ Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDRELKVTSMLMGV---PHTVVIVDELDVD 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 176 D--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276 >gi|311069711|ref|YP_003974634.1| diaminopimelate epimerase [Bacillus atrophaeus 1942] gi|310870228|gb|ADP33703.1| diaminopimelate epimerase [Bacillus atrophaeus 1942] Length = 284 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + A+ S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEEQLADIAVKVSSVYTGIGSDGMILICPSDKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKEN----RDGSIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ET+ G++ A+ + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFLIETLSGLVKAEVQTADGKVNVVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L +P+ + + VSMGNPH +F +E D+ Sbjct: 123 VDMGEPRLTKAELPMLGGGE---EQTINETMTFGEAELKGTAVSMGNPHIVFPIE-DIEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EG+N+ + + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVNEKELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K + ++V + GG L+I W +N HV MTG A+ EG + Sbjct: 239 LNGVSKRDDNITVHLAGGDLVINWKENGHVMMTGPAETVCEGVYFL 284 >gi|255656570|ref|ZP_05401979.1| diaminopimelate epimerase [Clostridium difficile QCD-23m63] Length = 276 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 18/285 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R N T+ A + D ++++ D + A D Sbjct: 1 MKFWKLHGIGNDFIAIDGRFDQINPSDYTALAKKVCHRRFSVGADGLLVVKDSKVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----I 116 + N DGS CGNG+RC +F+ +K++SFT +T+ GI K N I Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFCKFVYDNCIVKKESFTVDTLDGIKDIKINLTNREINSI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P+ + ++ ++ + V + E D+ Sbjct: 119 RVNMGKGSFIAKDVPVLTNKERFVQESIKVLDSEFKVTSMLMGV---PHTVVIVDELDVE 175 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + +G + + +F E N++ +V ++ + TWERG G T CG+ AS + Sbjct: 176 D--VCKYGKEIENNKIFPEKTNVNFVKVEDKYNIHVYTWERGCGYTLGCGTGMTASAIVC 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+ +V+V GG + I+ + +MTG A K EG L++ Sbjct: 234 NLLNMVESSVNVTSQGGTVKIDV--GDFSYMTGPAVKICEGILEV 276 >gi|261403045|ref|YP_003247269.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7] gi|261370038|gb|ACX72787.1| diaminopimelate epimerase [Methanocaldococcus vulcanius M7] Length = 295 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 134/291 (46%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVI---DMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI D +N + + + D ++ I + D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKIKENEKKNFSKKICRRGFSVGADGVIFIQKPTSDNFD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRG----ILVAKENRDGSI 116 RI N DGSE + CGNG+RC +++ R+ +K+ ET G + + I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERVMKKNPLRVETKGGLRISEMEVENGEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFF-VE 172 V MG P K IP+ + + + + + VV++GNPHA+ F + Sbjct: 121 KVYMGVPKFKLKDIPMILEGKDNEEEFLNGELNLNNPILPKVRLSVVNVGNPHAVIFVED 180 Query: 173 DDLYHYDLAS----FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 +++ + G + H F E +N+ +V + + + TWERG G T ACG+ Sbjct: 181 NNIDLDFVRKNLDIIGRDIENHKAFPERINVHFVKVLNPNEIKIITWERGAGYTTACGTG 240 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ASVV + L KT+ V + GG L IE D+ V+M G+A ++GKL Sbjct: 241 TTASVVVAHKLGKTSNKVLAHLDGGLLEIEVKDDG-VYMIGDAVAVYDGKL 290 >gi|196019649|ref|XP_002119015.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens] gi|190577310|gb|EDV18499.1| hypothetical protein TRIADDRAFT_62985 [Trichoplax adhaerens] Length = 285 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 18/292 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 MVDF K G+GN +VID + ++ + I + D I+ +D + Sbjct: 1 MVDFYKYHGLGNDYIVIDPAKLNFDLVLNEENIKLICHRNFGIGSDGILFGPIIKDNKIS 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN----RDGSIS 117 I +N DGSE + GNG+R ++ S F+ K I Sbjct: 61 FKI--LNPDGSEAEKSGNGIRIFALYVIDEGYVTSDKFDLYTKAGKVKIEVIDKNTNLIK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V +G+ IP+ ++ + + V++GNPH I + + Sbjct: 119 VSIGQYSFINHKIPVKLDCTEVLNQEIELLGKKEIIN----CVNIGNPHCILIKDK-ISK 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G +L HP+F N+ ++ ++ + WERG G T A G+++CA+ + Sbjct: 174 DLALKLGPILENHPIFPNKTNVQFVKILDRSNIKIEIWERGAGYTLASGTSSCAASCTAY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 L + V+V+M GG + +E + VF+TGE + +G ++IKK Sbjct: 234 ILDFIDNNVTVEMRGGKVFVEIIE-QEVFLTGEVSRISKGVF---ASEFIKK 281 >gi|146297784|ref|YP_001192375.1| diaminopimelate epimerase [Flavobacterium johnsoniae UW101] gi|146152202|gb|ABQ03056.1| Diaminopimelate epimerase [Flavobacterium johnsoniae UW101] Length = 260 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 38/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V+F K +G GN ++ID R D ++L+ + D+ D Sbjct: 3 VEFYKYQGTGNDFVMIDNRSNFFPKEDVKLIERLCDRRFGIGADGLILLEN--DSETDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG++ CGNG RC+V F + TF G+ A D +S+ M + Sbjct: 61 MVYYNSDGNQSSMCGNGGRCLVAFANQLGVINDKTTFIATDGLHHASVGDDSIVSLQMID 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + ++ G+PH + V+ DL HY++ Sbjct: 121 VD-------------------------EVQKNDSYTFLNTGSPHHVQIVD-DLEHYNVKE 154 Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + +G N++ + + LRT+ERGV T ACG+ A A +A + Sbjct: 155 NGAAIRYGELYGEKGSNINFVKKVDDGTFSLRTYERGVEDETLACGTGATAVAIAMNAIG 214 Query: 241 KTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 +T++ +++ + GG L++ + +VF+TG AK ++G ++I Sbjct: 215 QTDKTSINLNVEGGKLVVSFDKLGDHFTNVFLTGPAKFVFKGIIEI 260 >gi|288932439|ref|YP_003436499.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642] gi|288894687|gb|ADC66224.1| diaminopimelate epimerase [Ferroglobus placidus DSM 10642] Length = 281 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 122/291 (41%), Gaps = 22/291 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + FAKM G GN ++ID + A++ D ++ + + A D Sbjct: 3 IKFAKMHGNGNDFVIIDEFREEVVKEEEKPKFVRAIAHRNFGIGADGVIFVQKSEVA--D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRD---GSIS 117 A R N DGSE + CGNG+RC R++ ET+ GI + ++ + Sbjct: 61 AKFRYFNSDGSEAEMCGNGIRCFSRYVVEEGYAASPVRVETLAGIYELEVTKNEEGWWVK 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG P IP + + V+ G PHA+ FVED + Sbjct: 121 VDMGTPKFSKDEIPTKEDV-WGKEIKIDNRSFEI------YAVNTGVPHAVIFVED--FD 171 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 +D+ G + +F EG N++ + +RT+ERGV T +CG+ + A + Sbjct: 172 FDVVRTGRAIRMSELFPEGTNVNFVKREG-NKFFVRTYERGVENETLSCGTGSVAVAAVA 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 L + V + GG L +E+ + ++ G A + +GK+ + + Sbjct: 231 RKLGFADDKVEILTRGGKLFVEF-EGEKAYLIGGASRVADGKIRAEELNYE 280 >gi|187734560|ref|YP_001876672.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835] gi|187424612|gb|ACD03891.1| Diaminopimelate epimerase [Akkermansia muciniphila ATCC BAA-835] Length = 274 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 30/290 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 ++ F KM G GN +++D R + + + I AL D ++ + Q Sbjct: 2 LLHFYKMTGAGNDFVMVDNRDLSLSSVLDRETIEALCDRRFGIGADGLIAVEPSQGKGGI 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---FETIRGILVAKENRDGSISV 118 +R N DG E + CGNG RC F + + FET+ G++ A +DG+++V Sbjct: 62 VRMRYYNADGGEAEMCGNGARCFGNFAAALLHHDKTAPLPFETMAGVVTATFEKDGNVTV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 ++ P + + + + ++ G PHA+ F++ L Sbjct: 122 NLTNPHSM----------------QLFVLNADPTVGADVHFLNTGVPHAVAFLDK-LEGL 164 Query: 179 DLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D++ G L H F +G N + AR+ S + +RT+ERGV T ACG+ A + Sbjct: 165 DISRLGAYLRYHEAFSPKGTNANFARILSPGHIAIRTYERGVEDETLACGTGMTACALLH 224 Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 L + V + GG L + + V +TG A + G + I Sbjct: 225 AVLTDAPSPIQVDVAGGDTLKVGFQRTGDRFTDVTLTGPADLVFTGDIQI 274 >gi|228993662|ref|ZP_04153569.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442] gi|228766091|gb|EEM14738.1| Diaminopimelate epimerase [Bacillus pseudomycoides DSM 12442] Length = 288 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 11/281 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + I Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHYDLA 181 + +L F + R F VSMGNPHA+ FV+ D+ L Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYNNHRYAFTAVSMGNPHAVIFVD-DVEEAPLT 182 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ K Sbjct: 183 TLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGSGVTQACGTGACAAVVAAVLNEK 242 Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R ++V + GG L+I W + +V M G A+ G + Sbjct: 243 MKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|254518708|ref|ZP_05130764.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA] gi|226912457|gb|EEH97658.1| diaminopimelate epimerase [Clostridium sp. 7_2_43FAA] Length = 274 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 83/282 (29%), Positives = 134/282 (47%), Gaps = 20/282 (7%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM+G+GN ++I D ++ + D +++I A DA Sbjct: 1 MNFIKMQGLGNDFIIIIDNENVLIKTETEIAKKICNRRFGIGADGLVIIRKSNIA--DAK 58 Query: 64 IRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSI 116 + IIN DGS CGN +RC + +++ + ET GI + N+ S+ Sbjct: 59 MVIINSDGSRANMCGNAIRCFAKYLYEYGLVEKNIISIETGDGIKCVELYINDKNKVESV 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ D K IPL + + + + I + + MG PH I +D Y Sbjct: 119 KVNMGKGSFDGKDIPLN-NKNSLINEVIKIKEKEYKL----TALLMGVPHTILINNNDEY 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + K+ +F EG N++ +V + +++++TWERG G T ACG+ CASVVA Sbjct: 174 DVIEGK---DIEKNNLFIEGTNVNFVKVIDINNIEVKTWERGAGATLACGTGCCASVVAL 230 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 L + V+V+ LGG L +E NN V+M G A+ +G Sbjct: 231 KKLGLCSNKVNVETLGGSLAVEII-NNDVYMIGSAEFICKGN 271 >gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545] Length = 262 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 19/262 (7%) Query: 37 ALSTDDNTHFDQIMLIHDFQDASV--------DAFIRIINCDGSEVQSCGNGMRCVVRFL 88 + D +++ A D +R+ N DG+E + CGNG+RC+ F+ Sbjct: 1 MCDRNFGIGADGVIVAMPKGSAEYPGRVVEEEDYAMRMFNSDGTEPEMCGNGIRCLANFV 60 Query: 89 --TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 +++ T+ G++ + DG ++VDMG P L +P + D Sbjct: 61 AAIDDADPRAYKVGTLAGLIQPECKPDGQVAVDMGVPTLTPADVPTKLAA-TEDGAAVKS 119 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDD-------LYHYDLASFGNLLAKHPMFSEGVNL 199 VSMGNPH + F + + DLA+ G H F N Sbjct: 120 QMTVDGATWLATAVSMGNPHCVTFGREKGDEKGLAVDDMDLAAIGPSFESHETFPARTNT 179 Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259 V + + +R WERG G T ACG+ ACA+VVA +T+R +V++ GG L IEW Sbjct: 180 EFVEVVRRDYVKMRVWERGAGATLACGTGACATVVAGVLEGRTDRKCTVELPGGPLEIEW 239 Query: 260 HD-NNHVFMTGEAKKEWEGKLD 280 + ++ V MTG A+ + G++D Sbjct: 240 RESDSRVIMTGPAELVFYGEID 261 >gi|254442131|ref|ZP_05055607.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235] gi|198256439|gb|EDY80747.1| diaminopimelate epimerase [Verrucomicrobiae bacterium DG1235] Length = 270 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 103/284 (36%), Gaps = 24/284 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM G GN ++I+ ++ + + L D ++L++ D A + Sbjct: 3 IAFTKMHGAGNDFVMIENLDGKIELSKEQVARLCNRRFGIGADGLILLNPPADEFAQATM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG V CGNG RC F K + P+ Sbjct: 63 VYYNADGGRVDMCGNGARCFTSFALQNGVGDGTQLTFKTDAGPMKADAQDGEFTIRMTPM 122 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D R ++ G H I F + D+ D+ S G Sbjct: 123 HDL---------------RLDQTLSTPHGSFEYHFMNTGVEHVIVFRD-DVDQVDIKSEG 166 Query: 185 NLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + + H +G N + A + + +RT+ERGV T ACG+ A +A+ Sbjct: 167 SSIRYHTEFEPKGTNANFAEIQKDGVIKVRTYERGVEDETLACGTGVTAVAIAAALKGMA 226 Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 VS+ + GG L I + + ++ +TG AK + G ++ Sbjct: 227 KAPVSLLVAGGDTLKIGFDLDGENVSNITLTGPAKNVFTGSAEV 270 >gi|171911773|ref|ZP_02927243.1| diaminopimelate epimerase [Verrucomicrobium spinosum DSM 4136] Length = 274 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 30/291 (10%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 ++++ F KM G GN +++D R ++ ++I L D ++ + + D Sbjct: 2 ANLLSFWKMNGAGNDFVMLDNRDLSLQLSGESIAQLCDRHRGVGADGLLAVEPATEGG-D 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISVD 119 +R N DG E + CGNG RC RF+ + FET G++ A+ + ++ Sbjct: 61 FRMRYYNADGGEAEMCGNGARCFARFVNKLHDNSLAALKFETQAGMISAEF-FGDQVEIN 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177 M +P + + G V V+ G PHA+ FV+ + L Sbjct: 120 MSQPHSL----------------KLNQGLVVDGTPLEVHSVNTGVPHAVVFVDDVNALST 163 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 ++ G L H F +G N + A V S S+ +RT+ERGV T ACG+ A + Sbjct: 164 AEIRRLGACLRYHEAFAPKGTNANFATVISPGSIVIRTYERGVEDETLACGTGMVACALI 223 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVF----MTGEAKKEWEGKLDI 281 LH VSVK+ GG L + ++ V+ + G A ++GKL++ Sbjct: 224 HHELHGAAAPVSVKVKGGDTLKVGFNQAGDVYSDVTLHGPADFVFQGKLEV 274 >gi|269121586|ref|YP_003309763.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386] gi|268615464|gb|ACZ09832.1| diaminopimelate epimerase [Sebaldella termitidis ATCC 33386] Length = 285 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 21/284 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN----ITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K G+GN ++ D + N + A D I+++ + Sbjct: 4 LKFEKYHGLGNDFVIFDEKELEKNNIKDYSKLAEKVCHRRFGIGGDGILILKYVDEVP-- 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK----ENRDGS 115 F+ N DGS+ CGNG+RC + S + FT +TI G ++ E Sbjct: 62 -FMLYYNSDGSQAPMCGNGIRCFAYYLKNNSYVAEDKFTVKTIPGDMILDTYTDEKGTFF 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V+MG+P+ + K + + D ++ I + MG H++ F + DL Sbjct: 121 ARVNMGKPVFNVKEL-INTDKDNFINEKITIDGEEIEI----SFIFMGTDHSMIFSD-DL 174 Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 D+ G + +F + VN + + ++ + TWERG GLT ACG+ A AS V Sbjct: 175 SKTDIEGTGKKIENFTELFPKKVNANFVEIKDRNNIKVTTWERGAGLTLACGTGATASAV 234 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEG 277 + L KT+ V+V++ GG L+IE+ ++ FMTG ++K EG Sbjct: 235 LTAYLGKTDSKVNVEVPGGILVIEYPEHGKEAFMTGPSEKVAEG 278 >gi|297202835|ref|ZP_06920232.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083] gi|297148226|gb|EFH28907.1| diaminopimelate epimerase [Streptomyces sviceus ATCC 29083] Length = 289 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 118/308 (38%), Gaps = 39/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ A+ AL D ++ + + Sbjct: 1 MSTR-IPFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGIGGDGLLHVVRSAEHP 59 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAK 109 + F+ N DGS + CGNG+R R+L T G+ Sbjct: 60 EAAQMAGEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLALATRGGVKTVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +DG ++V MG+ +L + ++ V+MGNPHA+ Sbjct: 120 IAKDGDVTVGMGKALLPEGDVTVSVGDR----------------SWPARSVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H + + GVN+ + +R ERG G T +CG+ A Sbjct: 164 FVD-DLAHAGNLYSPPPFSPAAAYPSGVNVEFVVDRGPRHVAMRVHERGAGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A + V + GG L+I + + MTG A EG++D Sbjct: 223 CAVAVATARRDGVDPAATGSPATYTVDVPGGTLVITEQADGEIEMTGPAVIVAEGEID-- 280 Query: 283 TGKWIKKN 290 W++ Sbjct: 281 -ADWLENA 287 >gi|315223515|ref|ZP_07865371.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287] gi|314946550|gb|EFS98542.1| diaminopimelate epimerase [Capnocytophaga ochracea F0287] Length = 264 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 113/286 (39%), Gaps = 38/286 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDA 62 M+ F K +G GN ++ID R ++ D ++L+ + D D Sbjct: 1 MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLEN--DPQYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RCVV F + T F I G A D + + M Sbjct: 59 RMVYYNSDGRESTMCGNGGRCVVAFAKRLGIIEHETLFIAIDGEHRATIEGDSYVRLQMK 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + ++ G+PH + +VE ++ D+ Sbjct: 119 NVT-------------------------EVEEHKGYVFLNTGSPHHVQWVE-EVDTVDVK 152 Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 S G + +++ ++ + +RT+ERGV T +CG+ A +A + Sbjct: 153 SEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYHI 212 Query: 240 HKTN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280 +T+ + +++ GG L + + +++++G A+ +EG ++ Sbjct: 213 GETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFEGTIE 258 >gi|239944768|ref|ZP_04696705.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] gi|239991232|ref|ZP_04711896.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 11379] gi|291448231|ref|ZP_06587621.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] gi|291351178|gb|EFE78082.1| diaminopimelate epimerase [Streptomyces roseosporus NRRL 15998] Length = 288 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 118/308 (38%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M +S + F K G N +++ + + + L D ++ + Sbjct: 1 MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAALVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK 109 + F+ N DGS + CGNG+R +L + T T G Sbjct: 61 EARSMADEAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGTKRVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G I+V MG+ +L + ++ V+MGNPHA+ Sbjct: 121 LAKNGDITVSMGQALLPGASVTVSVDGR----------------SWPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H ++ EGVN+ + +R ERG G T +CG+ A Sbjct: 165 FVD-DLDHAGDLFSAPPFTPEAVYPEGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + AV+ V + GG L+I H + V MTG A EG +D Sbjct: 224 CAVAVATARRDGADPAVTGLPVTYRVDLPGGTLVITEHPDGAVEMTGPAVIVAEGVIDP- 282 Query: 283 TGKWIKKN 290 W++ Sbjct: 283 --AWLETA 288 >gi|78187819|ref|YP_375862.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273] gi|78167721|gb|ABB24819.1| diaminopimelate epimerase [Chlorobium luteolum DSM 273] Length = 268 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 73/284 (25%), Positives = 120/284 (42%), Gaps = 31/284 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K+ G GN +++D R + + AI AL D ++LI + AS + Sbjct: 5 IPFSKLSGAGNDFIIMDNRDRSITLEASAIRALCTRRTGIGADGLILIEPSETAS--FSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120 N DG CGNG RC V F S + F FE A + ++ + M Sbjct: 63 LYHNADGLPGTMCGNGGRCAVWFARSIGVQPDAGGCFRFEANGDPYQAWVSGPETVRLRM 122 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 EP I L + + G+PHA+ E + Sbjct: 123 REPRGIRDEIDLGGQY--------------------CAFIDTGSPHAVIRTEGLDAVDVV 162 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + + +F G N++ VT+ +S+DLRT+ERGV T ACG+ A A+ + S L Sbjct: 163 GEGRAIRHRTDIFPGGTNVNFIEVTATDSIDLRTFERGVEDETLACGTGAVAAALLSRRL 222 Query: 240 HKTN-RAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280 T+ ++ V++ G L + + ++ V++TG A + G + Sbjct: 223 GMTSADSIRVRVKSGDMLNVTFSEDMREVYLTGPAVIVYTGVVK 266 >gi|188575131|ref|YP_001912060.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519583|gb|ACD57528.1| diaminopimelate epimerase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 270 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 117/274 (42%), Gaps = 9/274 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D+R + L+ DQI+ I + A I N Sbjct: 1 MHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVGCDQILTIEAPRSEGAVAAYGIWNS 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI--LVAKENRDGSISVDMGEPILDW 127 DGS + CGNG RCV +L + F + + G +V MG P D Sbjct: 61 DGSAARQCGNGARCVAAWLVRDGIAQCERFIIDSPVTAHAVERLEGGRYAVAMGMPQFDP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPLA R H VSMGNPHA+ V + + G LL Sbjct: 121 PQIPLAG----FAHARDEYALPVHGDTVRFGAVSMGNPHAVVEVGR-VDAAPVERVGTLL 175 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 ++ F + VN+ +V + LR +ERGVG T ACGS ACA+ V + R V Sbjct: 176 QQNAAFPDSVNVGFVQVVDPTHVRLRVFERGVGETLACGSGACAAAVVLMQRCRVERDVQ 235 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + GG L I W D+ V M+G A ++G+ + Sbjct: 236 VSLPGGELRIRWPCDHEQVVMSGPAVFVFDGEWN 269 >gi|308174911|ref|YP_003921616.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7] gi|307607775|emb|CBI44146.1| diaminopimelate epimerase [Bacillus amyloliquefaciens DSM 7] gi|328913229|gb|AEB64825.1| diaminopimelate epimerase [Bacillus amyloliquefaciens LL3] Length = 284 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 97/286 (33%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + A+ S D ++LI + A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEERLAEIAVKVSSVYTGIGSDGMILICPSEKAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ET+ G++ A D ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLTEETSFFIETLSGLVKADITVDNGIVSEVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L K +P+ + D+ + + L + VSMGNPH +F V D+ Sbjct: 123 VDMGEPRLTKKELPMLGNEDERTINETFVFGETEL---SGTAVSMGNPHIVFPV-ADISQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EG+N+ S + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGINVEFVETVSADELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + NR ++V + GG L+I W DN HV MTG A+ G + Sbjct: 239 LNGVSERNRDITVHLAGGDLVINWQDNGHVLMTGPAETVCSGVYYL 284 >gi|296331799|ref|ZP_06874266.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675811|ref|YP_003867483.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151124|gb|EFG92006.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414055|gb|ADM39174.1| diaminopimelate epimerase [Bacillus subtilis subsp. spizizenii str. W23] Length = 284 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 133/286 (46%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ A+ S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEQLPEEKLSEIAVQVSSVYTGIGSDGMILICPSDQAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ++ + + + ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAEVQVENGKVNVVA 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L +P+ + VSMGNPH +F + D+ Sbjct: 123 VDMGEPRLTKAELPMLGGGE---EYTISETMTFGEAELTGTAVSMGNPHIVFPI-ADIEQ 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ K P F EGVN+ + L R WERG G+T ACG+ ACA+ VAS Sbjct: 179 APLTTLGPVIEKDPRFPEGVNVEFVETVNEHELHFRVWERGSGITQACGTGACAAAVASV 238 Query: 238 CLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + R ++V + GG L+I W N HV MTG A+ EG + Sbjct: 239 LNGVSERNQDITVHLAGGDLVINWKGNGHVMMTGPAEIVCEGVYFL 284 >gi|256820441|ref|YP_003141720.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271] gi|256582024|gb|ACU93159.1| diaminopimelate epimerase [Capnocytophaga ochracea DSM 7271] Length = 264 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 112/286 (39%), Gaps = 38/286 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDA 62 M+ F K +G GN ++ID R ++ D ++L+ D D Sbjct: 1 MMKFYKYQGTGNDFVMIDNRKGVFPKNNETLVAQLCHRRFGIGADGLILLE--DDPQYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RCVV F + T F + G A D + + M Sbjct: 59 RMVYYNSDGRESTMCGNGGRCVVAFAKQLGIIEHETLFIAVDGEHRATIEGDSYVRLQMK 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + ++ G+PH + +VE ++ D+ Sbjct: 119 NVT-------------------------EVEEHKGYVFLNTGSPHHVQWVE-EVDAVDVK 152 Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 S G + +++ ++ + +RT+ERGV T +CG+ A +A + Sbjct: 153 SEGATIRYGELYATQGGSNVNFVSKGEKGFKVRTYERGVEDETYSCGTGVTAVAIALYHI 212 Query: 240 HKTN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280 +T+ + +++ GG L + + +++++G A+ ++G ++ Sbjct: 213 GETDAQQITLHTRGGDLQVAFDRVGEGYENIYLSGSAQFVFDGTIE 258 >gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365] gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365] Length = 326 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 138/320 (43%), Gaps = 50/320 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---------DNITSDAINALS-TDDNTHFDQIMLIHDF 55 + F K G+GN LV+D+R + + + AL D IM + Sbjct: 1 MRFGKYHGLGNDFLVVDLRDPEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAVLPA 60 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKEN 111 DA +R++N DGSE + CGNG+RCVV++L R R++ ET G+L + + Sbjct: 61 -LGDGDARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCRAH 119 Query: 112 RDG------------SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 R ++VDMG P L+ IP+ ++ + Sbjct: 120 RSDTALGDGGIAAIEQVTVDMGRPRLERAQIPMHGPAEERCISEPLAIA---GRPLDITA 176 Query: 160 VSMGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS----------- 206 VSMGNPHAI FV+ G L +HP F N+ +A + Sbjct: 177 VSMGNPHAIAFVDVHGAEQRALAELIGPSLERHPWFPRHTNVELAHLRRAPQSAADDDGD 236 Query: 207 ----LESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEW- 259 ++L WERG G+T ACG+ ACA+ VA+ + A++V +LGG L I Sbjct: 237 SADSPTVIELVVWERGCGITLACGTGACATAVAACLTGRARPGEAITVHLLGGPLAITVG 296 Query: 260 HDNNHVFMTGEAKKEWEGKL 279 + + V M G A ++G + Sbjct: 297 AELDSVRMRGPATHVFDGVV 316 >gi|312132071|ref|YP_003999411.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132] gi|311908617|gb|ADQ19058.1| diaminopimelate epimerase [Leadbetterella byssophila DSM 17132] Length = 250 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 122/281 (43%), Gaps = 38/281 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K +G GN ++ID R D D ++LI ++ D +R Sbjct: 1 MKFYKYQGTGNDFVMIDNRSNTFQ--GDVAALCHRRFGIGADGLILIE--KEEGYDFRMR 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124 N DG+E CGNG RC V+F + + T F + G A+ + + Sbjct: 57 YFNADGAEGSMCGNGGRCAVQFASDLGIFEGKTSFIAVDGPHEAEITDKKVSLKMID--V 114 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +P + ++ G+PH I F E ++ D+++ G Sbjct: 115 HPLEEVP------------------------EGYFLNTGSPHLIIFTE-NVDAIDVSTEG 149 Query: 185 NLLAKHPMF--SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + + + GVN++ +V S S+ +RT+ERGV T +CG+ A+ + S + Sbjct: 150 AKIRYNEYWMAKGGVNVNYVQVLSPSSIKVRTYERGVEDETYSCGTGVTAASIISHFIKG 209 Query: 242 TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKL 279 + V V+ LGG L +++ + V +TG A+K +EG+L Sbjct: 210 VSTRVEVETLGGNLEVQFDPGSLITKVLLTGPAQKVFEGEL 250 >gi|153810058|ref|ZP_01962726.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174] gi|149834236|gb|EDM89316.1| hypothetical protein RUMOBE_00439 [Ruminococcus obeum ATCC 29174] Length = 284 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 111/278 (39%), Gaps = 15/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 +M+ K +G+GN LV+D + I L D I+ + Sbjct: 8 TMI---KYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGILY--GPIEIDGKM 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----ISV 118 +RI N DGSE GNG+R ++L K F + + V Sbjct: 63 GVRIFNSDGSEAAISGNGVRIFAKYLMDHEYVKEQKFSIQTLSGPIEVECLNNRATEFRV 122 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG+ + IP+ ++ + F + +++GNPH I F+ + Sbjct: 123 KMGKASFISREIPVTGEVREVINESFTFHNKEYK----ATCLTVGNPHCIIFMNQ-VTPE 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G + F E +NL I R +LD+ WERG G T A G+ +CA+ VA+ Sbjct: 178 LAKELGPYVENADEFPEKMNLQICRKIDTGNLDIEIWERGSGYTKASGTGSCAAAVAAYR 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 L V+V GG + I+ D++ ++MTG + Sbjct: 238 LGLVENRVNVNQPGGMIQIDIKDDDTIYMTGTVGYVAD 275 >gi|219850934|ref|YP_002465366.1| diaminopimelate epimerase [Methanosphaerula palustris E1-9c] gi|219545193|gb|ACL15643.1| Diaminopimelate epimerase [Methanosphaerula palustris E1-9c] Length = 277 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 111/287 (38%), Gaps = 28/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN------ALSTDDNTHFDQIMLIHDFQDAS 59 + F K+ G GN L+ID D + D ++ + Sbjct: 8 IPFCKLHGNGNDFLLIDELEGTR--IPDQMKGEFAELYCDRRFGVGADGVLFL--SAGTE 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGS--- 115 D +RI D SE + CGNG+RC R+ ++ ET G+L + S Sbjct: 64 GDLRMRIFQPDRSEAEMCGNGIRCFARYAFDQGYFTETCNVETPAGVLPVHVSIGDSTFL 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + M +P D IP + + G PHA+ V+ DL Sbjct: 124 AQIHMPDPAFDCPGIPATGEGVY----------QQTIAGLTVHATNTGVPHAVVIVD-DL 172 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D+ + HP F +G N++ +VT +++ +RT+ERGV T CG+ A AS Sbjct: 173 AAVDVPGLAPQIRHHPSFLKGANVNFVQVTGPDAISVRTFERGVEDETLCCGTGATASAA 232 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L V+V+ GG L I M G A + G++ + Sbjct: 233 VAHRLGLVGDHVAVETAGGPLWITL--GKETLMEGPAVTVFVGEIPL 277 >gi|302542063|ref|ZP_07294405.1| diaminopimelate epimerase [Streptomyces hygroscopicus ATCC 53653] gi|302459681|gb|EFL22774.1| diaminopimelate epimerase [Streptomyces himastatinicus ATCC 53653] Length = 303 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + F K G N +++ +++ A+ + D ++ + Sbjct: 7 LRFLKGHGTENDFVIVPDLDGRLELSAAAVARICDRRAGVGGDGLIRVVRSSAHPEARGM 66 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 A + F+ N DGS + CGNG+R R+L + +A I Sbjct: 67 AAEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQRAG------LAEEGDLTIATRAGLRHI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVE 172 + P + K + + + ++MGNPHA+ FV+ Sbjct: 121 HIAKAAPEGAPDSGAVTVGMGKAVLPEPGPDGDVTVEVGDRTWSARNINMGNPHAVAFVD 180 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DL + + +G N+ + + +R ERG G T +CG+ ACA Sbjct: 181 -DLDQAGNLFTAPAVHPASAYPDGTNVEFVVDRGPQHVAMRVHERGSGETRSCGTGACAV 239 Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 +VA+ + AV +V + GG L+I + V MTG A EG+LD Sbjct: 240 MVAAARRDGADPAVTGRPVTYTVDVPGGRLVISEQPDGTVEMTGPAVIVAEGELDP---V 296 Query: 286 WIKK 289 W+ Sbjct: 297 WLDA 300 >gi|256810266|ref|YP_003127635.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86] gi|256793466|gb|ACV24135.1| diaminopimelate epimerase [Methanocaldococcus fervens AG86] Length = 297 Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 83/291 (28%), Positives = 129/291 (44%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI+ + + + D ++ + D Sbjct: 3 MEFTKMHALGNDYIVINEFDGEKVKEEEKSYFAKKICRRGFSVGADGVIFVQKPTSDEYD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG-----ILVAKENRDGSI 116 RI N DGSE + CGNG+RC +++ R+ +K+ +G + + + I Sbjct: 63 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLNVETKGGLRVSEMEIEGDEVKKI 122 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173 V MG P K IP+ D + + +L VV++GNPHA+ FVED Sbjct: 123 KVYMGVPKFKLKDIPMVVDGYSEDDEFLNGELELKNPYLPKVKLSVVNVGNPHAVIFVED 182 Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D L G + H F E +N+ +V + + + TWERG G T ACG+ Sbjct: 183 NGIDLDFVRKHLDVIGKEIEHHKAFPERINVHFVKVLNPNEIRIITWERGAGYTTACGTG 242 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ASV+ + L KT V + GG L IE D+ V+M G+A ++ KL Sbjct: 243 TTASVIIAHKLGKTGNKVLAHLDGGDLEIEIKDDG-VYMIGDAVIVYDAKL 292 >gi|301168259|emb|CBW27849.1| putative diaminopimelate epimerase [Bacteriovorax marinus SJ] Length = 265 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 25/283 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASV 60 S+ + F K G GN +V+D R + A+ D ++ ++ Sbjct: 4 SAKISFDKYCGTGNDFIVLDNRTGSFDQQDQALWQRICDRRFGVGADGVLFFNNSD--EY 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + +N DG EV CGNG R + F + + F F+T G+ + + G I ++ Sbjct: 62 DFEMAYLNADGGEVGMCGNGARVLTSFAKKIQFDKTDFKFKTRDGVYSSSVLKSGLIKLE 121 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 M + + I + + ++ F + G PH ++F++ L + Sbjct: 122 MTQ-----------------LSEINTIDVSDLITSKDSFFMDTGVPHCVYFLD-SLDNIP 163 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGC 238 L +G + FSEG N + + L +RT+ERGV T ACG+ A A A Sbjct: 164 LMEWGAKVRYDKRFSEGANANFVEIIDEGHLKVRTYERGVEGETLACGTGATACAWAYRE 223 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L+K + + + GG L + + ++ V+++G+ +K + G ++ Sbjct: 224 LYKQIDHIKIDVPGGELEVLF-EDGKVYLSGKVEKIFSGVFEV 265 >gi|229007257|ref|ZP_04164858.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4] gi|228754011|gb|EEM03448.1| Diaminopimelate epimerase [Bacillus mycoides Rock1-4] Length = 288 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 11/281 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + I Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDLA 181 + +L F + R F VSMGNPHA+ FV+ D+ L Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTGVSMGNPHAVIFVD-DVEEAPLT 182 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ K Sbjct: 183 TLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAVLNEK 242 Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R ++V + GG L+I W + +V M G A+ G + Sbjct: 243 MKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|17232333|ref|NP_488881.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] gi|20141402|sp|P54897|DAPF1_ANASP RecName: Full=Diaminopimelate epimerase 1; Short=DAP epimerase 1 gi|17133978|dbj|BAB76540.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 285 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 126/278 (45%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +GN LVI+ + +T + I + D +L+ + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDG-ILLGPLASTKAQFAL 59 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI N DGSE + GNG+R + + K F+ ET GI+ + G + V+MG Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ +++ + + ++GNPH + ++ D+ Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLD----EGIFTFCAATIGNPHCVILLD-DINSEVAR 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +FG + +P+F N+ +V ++ + WERG G T A GS++ A+ + L Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLASGSSSSAAAATAHKLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + VKM GG +LI+ D+ H+ MT K +G+L Sbjct: 235 CDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 272 >gi|313675859|ref|YP_004053855.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126] gi|312942557|gb|ADR21747.1| diaminopimelate epimerase [Marivirga tractuosa DSM 4126] Length = 259 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 36/283 (12%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +F K +G GN +V+D R + T I + D ++LI + D + Sbjct: 5 EFYKYQGTGNDFVVVDNRSLKLDKTDKTIAQKLCNRKFGVGSDGLILIENHD--EYDFEM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS+ CGNG RC V+F K TF + G+ A Sbjct: 63 IFFNPDGSQS-MCGNGSRCAVKFAQFLGIIKGETTFLSTDGVHEATI------------- 108 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 D + + F ++ G+PH + F + Sbjct: 109 -----------EGDIVRLSMHDVAQSEINTFPEHFTINTGSPHYVIFASNIKNKDVKEEG 157 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 ++ +EG+N++ S + +RT+ERGV T +CG+ A +A+ Sbjct: 158 ASIRYNEEFAAEGINVNFVEKLSENKISVRTYERGVEDETLSCGTGVTACAIANVLHGGV 217 Query: 243 NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 V ++ LGG L++E+ + +V++TG AK ++G++++ Sbjct: 218 -SPVQIETLGGQLVVEFELDEGSARNVWLTGPAKNVFKGEIEL 259 >gi|228999700|ref|ZP_04159276.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17] gi|228760062|gb|EEM09032.1| Diaminopimelate epimerase [Bacillus mycoides Rock3-17] Length = 288 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 11/281 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM G+GN + ++M ++ A + + D ++LI + A V + Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEELSLVAEKVSNINTGIGADGMILICPSEVAPV--KM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ + I Sbjct: 64 RMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGIVTLAKI 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVEDDLYHYDLA 181 + +L F + R F VSMGNPHA+ FV+ D+ L Sbjct: 124 DMGAPRLTRAELPMLGEGETPFIREDFLYSNHRYVFTGVSMGNPHAVIFVD-DVEEAPLT 182 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H MF E VN+ + + ++ R WERG G+T ACG+ ACA+VVA+ K Sbjct: 183 TLGPVLETHEMFPERVNVEFIEIVNDNEMNFRVWERGTGVTQACGTGACAAVVAAVLNEK 242 Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R ++V + GG L+I W + +V M G A+ G + Sbjct: 243 MKRGEEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 283 >gi|291278646|ref|YP_003495481.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1] gi|290753348|dbj|BAI79725.1| diaminopimelate epimerase [Deferribacter desulfuricans SSM1] Length = 271 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 24/287 (8%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R N+ + + D ++LI + VD Sbjct: 3 IPFYKMTGSGNDFIIIDNRDGKMNDFNLKDFIPKVCARCVSVGADGLILIENSDK--VDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS + CGNG RC RF K FETI GI+ A+ ++ V + Sbjct: 61 KWQFFNADGSSAEMCGNGSRCAARFAYLNGIAGKKMKFETIAGIIEAEIMDGFNVKVQLT 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP ++ ++ G PH + V+DD+Y +D+ Sbjct: 121 EPF----------------DEKIDYEIEVLGEKLTVSSINTGVPHVVVEVKDDIYSFDVV 164 Query: 182 SFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G + H G N++ + L +RT+ERGV T ACG+ + A+ + + Sbjct: 165 KYGREIRFHDVYKPAGTNVNFFKKIGENKLKVRTYERGVENETMACGTGSVATSIIAVKK 224 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 N V ++ G +L + ++ VF+ GEA+ + G L+ + ++ Sbjct: 225 GIVNSPVEIETSSGLILKVYLEDKKVFLEGEARVVYTGNLNKEALEY 271 >gi|217967168|ref|YP_002352674.1| diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724] gi|217336267|gb|ACK42060.1| Diaminopimelate epimerase [Dictyoglomus turgidum DSM 6724] Length = 285 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K G+GN +V D + +T + + + D I+++ + + + Sbjct: 1 MEFIKSHGLGNDYIVFDKEKINFPLTEKNVRLICDRNYGIGSDGILILEKI--NNQEFKV 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-------NRDGSIS 117 RI N DGSE + GNG+R + +++ F K R SI Sbjct: 59 RIFNPDGSEAEKSGNGIRILAKYIYDYRYTTEKEFYIYTLGGKVKVSIVEEQKGRAKSIE 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ IP+ S ++ + I +S+GNPH +FFV+ ++ Sbjct: 119 VEMGKITFKSSEIPVLGSEREIIDEELKIND----ETIKVTCLSIGNPHCVFFVD-EINE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + S G + HPMF +N+ + +V S + +++R WERG G T A GS++CA+ AS Sbjct: 174 EKIKSLGPKIENHPMFPNRINVQMVKVLSPDKIEIRIWERGAGYTLASGSSSCAAASASY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N V V M GG L ++ + + V + G A++ ++G+L Sbjct: 234 KKGLVNNQVEVIMPGGVLHVKINPDWSVNLVGPAEEVFKGEL 275 >gi|145220423|ref|YP_001131132.1| diaminopimelate epimerase [Prosthecochloris vibrioformis DSM 265] gi|145206587|gb|ABP37630.1| diaminopimelate epimerase [Chlorobium phaeovibrioides DSM 265] Length = 268 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 112/278 (40%), Gaps = 23/278 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F+K+ G GN +VID R +++ I + D ++LI AS D + Sbjct: 5 IPFSKLSGAGNDFVVIDNRNLTISLSQQEIAGMCRRRTGIGADGLILIEPS--ASADFMM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DG CGNG R V F S + E G G P Sbjct: 63 KYHNADGHPGSMCGNGGRAAVWFAHSIG--------------IPFEQEGGCRFEAGGNPY 108 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 W I + + + V G+PHAIF+ + G Sbjct: 109 RAW--ITASETVRLQMLEPKGFRDNIKTGGGACHFVDTGSPHAIFYTTGLDGVDVVGRGG 166 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + + +F G N++ VT+ +S+ LRT+ERGV T ACG+ A AS + S L T Sbjct: 167 EVRHRTDLFPGGTNVNFIEVTAPDSISLRTFERGVEDETLACGTGAVASALMSHRLGMTP 226 Query: 244 R-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGK 278 + V++ G L + + + +F+TG A+ + G Sbjct: 227 STTIQVRVQSGDTLEVRFSSDMKEIFLTGPARIVYRGT 264 >gi|242281163|ref|YP_002993292.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638] gi|242124057|gb|ACS81753.1| diaminopimelate epimerase [Desulfovibrio salexigens DSM 2638] Length = 281 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 115/286 (40%), Gaps = 23/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHD-FQDASVD 61 V F KM+G GN ++ID R + A + D + I + + + +D Sbjct: 9 VPFYKMQGCGNDFVIIDNRELGIPVEKMSLWAEKLCQRAFGVYADGLFFIENAPEGSGLD 68 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGN RC R + + F + G + + Sbjct: 69 FVWQFYNSDGSRAEMCGNASRCAGRLAHALEIAGEQHVFGSDAGPIKVQV---------- 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P L+ + L + + I + + G PH + V D+ D+ Sbjct: 119 -FPELEEVKVQLTPPQGLVVKQTLEIDGEEYE----YHFANTGVPHVVVQV-ADVEEVDI 172 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 G H F G N++ ++ +SL +RT+ERGV T ACG+ A V Sbjct: 173 KKLGAAFRYHEAFAPAGTNVNFVQIDDNDSLIVRTYERGVEDETYACGTGVSAVQVTLYE 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 T+ AV V+ GG +L ++ +VF+ G A+ + G++ +++ Sbjct: 233 QGLTDAAVRVRTSGGEILKVIIEDGNVFLQGGAELTFSGEVYLESL 278 >gi|189345730|ref|YP_001942259.1| diaminopimelate epimerase [Chlorobium limicola DSM 245] gi|189339877|gb|ACD89280.1| Diaminopimelate epimerase [Chlorobium limicola DSM 245] Length = 272 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 33/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +VID R ++++ I A+ D ++LI + D + Sbjct: 3 IHFTKLSGAGNDFIVIDNRNHPVHLSTARIKAMCTRRTGIGADGLILIEPSRH--FDFSM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT----SRMKRKSFTFETIRGILVAKENRDGSISVDM 120 N DG CGNG RC V F + ++FE A ++ + M Sbjct: 61 NYYNADGLPGSMCGNGGRCAVYFAHATGVPAADQGRYSFEANGNRYEAAVTGKETVRLHM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE-DDLYHYD 179 +P + + N V+ G+PHA+ ++E L D Sbjct: 121 LDPEDFRNAVAVEG--------------------FNCHYVNTGSPHAVIYIESRKLEALD 160 Query: 180 LASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 ++ G + + +F G N++ +T+ +S+ +RT+ERGV T ACG+ A A+ + S Sbjct: 161 VSGHGKAIRLRSDVFPGGTNVNFLEITAPDSISVRTFERGVEDETLACGTGAVAAALMSF 220 Query: 238 CLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLDIK 282 L K + V VK+ G L + + ++ V +TG AK + G +++ Sbjct: 221 RLGKVSSSTVKVKVRSGDTLEVAFSEDLKSVTLTGPAKIIYRGIAEVQ 268 >gi|302537339|ref|ZP_07289681.1| diaminopimelate epimerase [Streptomyces sp. C] gi|302446234|gb|EFL18050.1| diaminopimelate epimerase [Streptomyces sp. C] Length = 291 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 117/308 (37%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ A+ AL D ++ + Sbjct: 1 MTHTTLSFLKGHGTENDFVIVPDPDNSVDLPPTAVAALCDRRAGIGADGVLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 61 EAAHMADEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQHAGHVEPGDLAIATRGGVKQVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++ G ++V MG +L + ++ V+MGNPHA+ Sbjct: 121 LDKTGDVTVSMGRALLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVE L H + + GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVE-SLDHAGNLYSPPPFSPASAYPTGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ +T R V +V + GG L+I H + V MTG A G+ + Sbjct: 224 CAVAVAAIRRDGADPAETGRPVSYTVDLPGGTLVITEHPDGRVDMTGPAVIVASGEFE-- 281 Query: 283 TGKWIKKN 290 W+ + Sbjct: 282 -AAWLTET 288 >gi|319951600|ref|YP_004162867.1| diaminopimelate epimerase [Cellulophaga algicola DSM 14237] gi|319420260|gb|ADV47369.1| Diaminopimelate epimerase [Cellulophaga algicola DSM 14237] Length = 258 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 119/285 (41%), Gaps = 38/285 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R + T D ++L+ + + +D Sbjct: 3 LTFYKFQGTGNDFVMVDNRQNLFDKKDTKLIAFLCDRRFGVGADGLILLEN--EDGLDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + S +F I G+ A ++G +S+ M Sbjct: 61 MVYFNSDGNESTMCGNGGRCLVSFANYLGIIENSASFNAIDGLHKASI-KEGLVSLQMKN 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 N + G+PH + V +L +++ Sbjct: 120 VS-------------------------EIKEKPNAVFLDTGSPHHVQLV-ANLKDFNVKK 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G L +G N++ + +RT+ERGV T +CG+ A+ +A K Sbjct: 154 EGARLRYGVYGEKGSNINFVEQIDAVNFSVRTYERGVEDETLSCGTGVTAAAIAMHKTAK 213 Query: 242 T-NRAVSVKMLGGGLLIEWH-DNN---HVFMTGEAKKEWEGKLDI 281 T + +K LGG L I + ++ +VF+TG AK ++G++D+ Sbjct: 214 TAGNEIYIKALGGDLTIRFDVEDGVYSNVFLTGPAKFVFKGEIDV 258 >gi|164687809|ref|ZP_02211837.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM 16795] gi|164603084|gb|EDQ96549.1| hypothetical protein CLOBAR_01453 [Clostridium bartlettii DSM 16795] Length = 277 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 79/285 (27%), Positives = 136/285 (47%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F K+ GIGN + ID R + + A A + D ++++ + A D Sbjct: 1 MKFWKLHGIGNDFVAIDGRYDNIDNNDYGEYAKRACHRKFSVGADGLLVVKNSDVA--DV 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDG----SI 116 + N DGS CGNG+RC V+F+ + F T+ GI K N SI Sbjct: 59 EMVYYNSDGSRAAMCGNGLRCFVKFVYDNNIVEKDEFNVYTLDGIKKVKINLKDGKIESI 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+ K +P++ +K + + + + MG PH + FV+ +L Sbjct: 119 KVNMGKGSFLAKDVPVSAQIEKFVEQKITVLDREY----TVTSILMGVPHTVIFVD-ELS 173 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 ++ +G + KH +F + N++ ++ +++ ++T+ERG G T CG+ A V+ S Sbjct: 174 MEEVCKYGAAIEKHYIFPKKTNVNFVKIIDDKNILVKTFERGCGYTFGCGTGMTACVMVS 233 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K ++V+V GG + I+ +N +MTG A K EG L++ Sbjct: 234 NYLGKVGKSVNVISEGGSVRIDL-ENGFAYMTGPAVKICEGNLEV 277 >gi|158523170|ref|YP_001531040.1| diaminopimelate epimerase [Desulfococcus oleovorans Hxd3] gi|158511996|gb|ABW68963.1| Diaminopimelate epimerase [Desulfococcus oleovorans Hxd3] Length = 310 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 13/293 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 V F K G+GN +VID + +++D + + + D I+ F + D + Sbjct: 26 VQFHKYHGLGNDYIVIDPADAGEVLSADQVRRICHRNYGMGSDGILF-GPFAGSRGDFGL 84 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKEN-RDGSISVDM 120 RI N DGSE + GNG+R R+L F +T G++ A + DG I+VDM Sbjct: 85 RIFNPDGSEAEKSGNGLRIFARYLWDMGLVDADAPFAIDTKGGVVHAMVHGADGLITVDM 144 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + IP+ + + + ++GNPH + + ++ Sbjct: 145 GTVSFEAADIPVTG----ITGEVLNQPVCVKGRDLVYCGATIGNPHCVVLCD-EISDQMA 199 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G+ L P F N+ +V ++ + WERG G T A GS+A AS + + Sbjct: 200 LELGSSLENDPRFPNRTNVQFMKVIDRNTIAIEIWERGAGYTLASGSSASASAAVARRIG 259 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 ++++ V M GG L I D+ + +TG A K G + T W ++ Sbjct: 260 VCDQSIIVHMPGGTLDITVKDDYSIRLTGPAAKIAMGT--LSTEVWSGTPPEE 310 >gi|166032803|ref|ZP_02235632.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC 27755] gi|166027160|gb|EDR45917.1| hypothetical protein DORFOR_02518 [Dorea formicigenerans ATCC 27755] Length = 285 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 12/274 (4%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINC 69 G+ N +V D +T + + + D ++ +++ N Sbjct: 8 YHGLSNDYVVFDPNKNELELTPGNVKMICDRNAGLGADGVL--EGPVIKEDGMHVKVWNP 65 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPIL 125 DGSE ++ GNG+R ++L + F+ A + V MG+ Sbjct: 66 DGSESETSGNGVRIFAKYLKDAGYIQKKNFKLYTRYGEAAVTFLNEDGSRLRVSMGKISF 125 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 IP+ ++ + G L VS+GNPH + + ++ + G+ Sbjct: 126 WSDEIPVTGEKREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISKNIVCKIGD 180 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 F +N I +V E++ + +ERG G T A G+ ACA+ + L TN Sbjct: 181 YSECAKYFPHRINTQIMKVIDKENIAIEIYERGAGYTLASGTGACAAAAVAHKLGMTNNK 240 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V M GG L +E D+ VFMTG+ + L Sbjct: 241 VIVHMPGGDLQVEVEDDGTVFMTGDVFYVAKITL 274 >gi|330976602|gb|EGH76646.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 223 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 105/228 (46%), Gaps = 9/228 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + IP + VSMGNPHA+ V+ D+ + + Sbjct: 122 PPRFVPEEIPFEAA-----EQAISYTVDVDGQNIEMAAVSMGNPHAVLRVD-DINNAPVH 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 G + HP F VN+ V + LR WERG G T ACG+ A Sbjct: 176 ELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGA 223 >gi|108761193|ref|YP_633209.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622] gi|108465073|gb|ABF90258.1| diaminopimelate epimerase [Myxococcus xanthus DK 1622] Length = 283 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 112/281 (39%), Gaps = 11/281 (3%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRII 67 K +G+GN +V+D RG ++I + + D ++ + + A + + Sbjct: 8 FKYQGLGNDFVVLDRRGSGEDIDAATSRWMCDRRLGIGGDGVLALLPSERGI--ARMVVH 65 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPILD 126 N DGS + CGNG+RC V+FL + G V G V + + Sbjct: 66 NADGSIAEMCGNGLRCAVKFLVDDSGQTPGHINVETGAGVLTCYPSYGEGGVVAVDISMG 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 + F V + VSMGNPH + D D + G L Sbjct: 126 PARLVAPNLPSGATGQPFLDALVPGHPPLRAYAVSMGNPHMVL---LDQPLEDASRLGPL 182 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 L HP F + N+ R + L + WERG GLT ACG+ ACAS VA+ + Sbjct: 183 LEHHPSFPDRTNVEFVR-VDSDGLTVVVWERGCGLTQACGTGACASAVAAVLAKRLPADA 241 Query: 247 --SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKTG 284 V + GG L I + + + + G +EG + +G Sbjct: 242 WLRVTLPGGDLSIRVPADLSDIRLRGPVAFVFEGVVATPSG 282 >gi|150025283|ref|YP_001296109.1| diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86] gi|229807492|sp|A6GYX5|DAPF_FLAPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|149771824|emb|CAL43298.1| Diaminopimelate epimerase [Flavobacterium psychrophilum JIP02/86] Length = 256 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 38/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + K +G GN ++ID R T+ D ++L+ + D S D Sbjct: 1 MKLYKYQGTGNDFIMIDNRLQIFPKQNTALIQKLCDRRFGIGADGLILLEN--DQSTDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG++ CGNG RC+V F + + TF I G+ A N + IS+ M Sbjct: 59 MVYYNSDGNQSTMCGNGGRCLVAFAKKLNIIKNKTTFIAIDGLHHATINENDIISLQMKN 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 N ++ G+PH + F + +L ++D+ + Sbjct: 119 VE-------------------------EVNIHDNYVFLNTGSPHHVQFAD-NLSNFDVKN 152 Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + G N++ TS +RT+ERGV T +CG+ A A+ +A Sbjct: 153 EGAKIRYSDLYGQAGSNINFVHQTSPTQFSIRTYERGVEDETLSCGTGATATAIAMKATG 212 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 KTN +++ + GG L + ++ N ++F+ G A+ +E + Sbjct: 213 KTNSNNITINVQGGKLEVSFNQENSIFTNIFLKGPAEFVFETTI 256 >gi|295135431|ref|YP_003586107.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87] gi|294983446|gb|ADF53911.1| diaminopimelate epimerase [Zunongwangia profunda SM-A87] Length = 263 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 35/284 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R N T D ++L+ D Sbjct: 3 LQFFKYQGTGNDFVMIDNRNNVVSKNDTKLINRLCDRKFGIGADGLILLEHPDVEGDDFK 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGE 122 + N DG++ CGNG RC+V F ++ F I G A ++D +++ M Sbjct: 63 MVYFNADGNQSSMCGNGGRCLVAFAKMLGIIETQAKFTAIDGPHKAFIDKDNVVNLQMQN 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + N + G+PH I F ED Sbjct: 123 VS-------------------------DIYQSGNIAFLDTGSPHHIVFTEDVKNLDVKEE 157 Query: 183 FGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + +G N++ T + +RT+ERGV T ACG+ A +A+ + Sbjct: 158 GAAIRYSSDYKEKGTNVNFVEKTDEENTFIVRTYERGVEDETLACGTGVTAVAIAAHHSN 217 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 +T V +++ GG L + + + V++ G A ++G++ Sbjct: 218 RTKASEVKLQVPGGNLSVSFKSDGDSYSDVWLKGPAVLVFKGEI 261 >gi|289191541|ref|YP_003457482.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22] gi|288937991|gb|ADC68746.1| diaminopimelate epimerase [Methanocaldococcus sp. FS406-22] Length = 295 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 89/291 (30%), Positives = 135/291 (46%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI+ + + + D ++ I D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKVKEEEKGNFAKKICRRGFSVGADGVIFIQKPTSDEYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGS----I 116 RI N DGSE + CGNG+RC +++ R+ +K+ ET G+ V++ +G I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173 V MG P K IP+ K D + + +L VV++GNPHA+ FVED Sbjct: 121 KVYMGIPKFKLKDIPMVVDGYKEDDEFLNGELKLKNPYLPKVKLSVVNVGNPHAVIFVED 180 Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D L G + H F E +N+ +V + + + TWERG G T ACG+ Sbjct: 181 NGIDLDFVREHLDVIGKEIECHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTACGTG 240 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ASV+ + L KT+ V + GG L IE D+ V+M G+A ++ KL Sbjct: 241 TTASVIIAHKLGKTSNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290 >gi|78188320|ref|YP_378658.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3] gi|78170519|gb|ABB27615.1| diaminopimelate epimerase [Chlorobium chlorochromatii CaD3] Length = 270 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 33/285 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +VID R +++ I AL D ++LI A D + Sbjct: 3 IPFKKLSGAGNDFIVIDNRHNSIEFSTETIKALCTRRTGIGADGLILIEASLSA--DFTM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DG CGNG RC F + K + FE A + + M Sbjct: 61 KYYNSDGLLGSMCGNGGRCAAYFAYNSGVPTQKSNEYLFEANGNYYHAWIVDKEQVKLQM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + + + ++ G+PH + +V+D Sbjct: 121 NPPHDFKENLQVEG--------------------LLCYFLNTGSPHVVTYVDDVNIINVY 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + + +F+ G N++ + TS L +RT+ERGV T ACG+ A AS + S L Sbjct: 161 EKGDAIRHRTDIFNGGTNVNFVQQTSANELIIRTFERGVEDETLACGTGAVASALISHML 220 Query: 240 HKTNR---AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLD 280 KTN V+V+ G L I + +++++G AK + G + Sbjct: 221 GKTNSTSLNVTVRS-GDTLQISFTSAMENIYLSGPAKIIFSGTFE 264 >gi|291521301|emb|CBK79594.1| diaminopimelate epimerase [Coprococcus catus GD/7] Length = 307 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 111/295 (37%), Gaps = 27/295 (9%) Query: 8 FAKMEGIGNKILVIDMRG----CHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDA 58 F KM G+GN + +D S+ L+ D ++ I ++A Sbjct: 11 FTKMHGLGNDYIYMDGFDSRMSKPAAWPSEQKGRLAVMMSRRHTGIGADGLIFIQPSEEA 70 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + + + N DGS CGNG+RC R+ + +F+ + R I Sbjct: 71 A--FRMEMYNADGSRGAMCGNGIRCAARYAYDHGISTNQSFQVQTDSGI----RSVYIRK 124 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV----VSMGNPHAIFFVEDD 174 + + + + ++ VS GN H IFFVE + Sbjct: 125 TDEGEHITSVRVDMGVMANLGEQRVLLKAKEEWTDFTGGSFPVQYVSAGNRHCIFFVE-N 183 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAA 229 + + L L+ P +GVN+ A V + + +R ERG G T ACG+ A Sbjct: 184 VEAFQLKKAAELIHTLPGNEDGVNVEAAAVEKIAVTGEKYIKMRVIERGSGETMACGTGA 243 Query: 230 CASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA A+ + V ++ GG L + + + M G A+ +EG DI Sbjct: 244 CAVTAAAVWQGYCRYDENVEIRQPGGILTTAYLADGRMLMEGPAEYVFEGYFDIP 298 >gi|158320453|ref|YP_001512960.1| diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs] gi|167012031|sp|A8MH77|DAPF_ALKOO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|158140652|gb|ABW18964.1| Diaminopimelate epimerase [Alkaliphilus oremlandii OhILAs] Length = 280 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 134/282 (47%), Gaps = 15/282 (5%) Query: 6 VDFAKMEGIGNKILVI--DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V F KM+G GN +V+ D + ++ A D +++++ A D Sbjct: 3 VQFKKMQGTGNDFIVVKYDDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPSSIA--DIR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA----KENRDGSIS 117 + N DGS CGNG+RC +F+ + K F+ ET+ GI ++ S+ Sbjct: 61 MDYYNSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQFSVETLDGIKEIAIIEEKGTVKSVE 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG+ D + IP+ + +G + + VSMG PH I F E L Sbjct: 121 VNMGQVTYDTEKIPVVSEDGYFINKKITVGGQDFII----TAVSMGVPHVIIFTEK-LDL 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + FG L+ KH +F + N++ +++ +RTWERG G T ACG+ + ++V + Sbjct: 176 EQIKFFGPLIEKHAIFPKKTNVNFVHRIDKDNIAVRTWERGAGYTLACGTGSTSAVAVAN 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L N V+V++ GG + I+ ++ ++FM G A+ G+ Sbjct: 236 KLGLVNNNVNVEVEGGNIKIKIKESGNLFMEGPAENICSGRF 277 >gi|213964302|ref|ZP_03392529.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno] gi|213953061|gb|EEB64416.1| diaminopimelate epimerase [Capnocytophaga sputigena Capno] Length = 258 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 116/286 (40%), Gaps = 38/286 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62 M++F K +G GN ++ID R ++ + A D ++L+ + D+ D Sbjct: 1 MMNFYKYQGTGNDFVMIDNREGTFPKDNEKLIAHLCDRRFGIGADGLILLEN--DSQYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 + N DG + CGNG RCVV F + T F I G A D + + M Sbjct: 59 RMVYYNSDGRQSTMCGNGGRCVVAFAKQLGVIERETLFIAIDGEHRATIEGDNYVHLQMK 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + ++ G+PH + +V+ D+ D+ Sbjct: 119 NVT-------------------------SVEEHPDYVFLNTGSPHHVQWVD-DVETVDVK 152 Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G ++ ++++ ++ +RT+ERGV T +CG+ A +A Sbjct: 153 PEGAVIRYGTLYADKGGSNVNFVSKGENGFKVRTYERGVEDETYSCGTGVTAVAIALYHT 212 Query: 240 HKTN-RAVSVKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280 +T + +++ GG L + + + +++++G A+ +EG + Sbjct: 213 KQTKAQTITLHTRGGDLQVSFDRVAEEYKNIYLSGSAQFVFEGVIK 258 >gi|225387894|ref|ZP_03757658.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme DSM 15981] gi|225046021|gb|EEG56267.1| hypothetical protein CLOSTASPAR_01664 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 17/286 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+GIGN + ++ + +S D ++LI + D + Sbjct: 7 MRFTKMQGIGNDYVYVNCFEETVADPAAVARFVSDRHFGIGSDGLILIGPS--GTADCRM 64 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS CGNG+RCV ++ R+S T ET+ G+ + +V+ Sbjct: 65 DMYNMDGSRGVMCGNGVRCVGKYAYDHGLVPGDRRSLTVETLAGVKTIE------FTVEE 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +L+ + ++ + V+ + +S+GNPHA++F++ + L Sbjct: 119 KNGRFTARLLTVDMGEARLTSELPEPINVDGRD-YSFVGISVGNPHAVYFMD-SIDDLRL 176 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G HP F + VN ++ + +R WERG G T ACG+ A AS A+ + Sbjct: 177 DRIGPSFEMHPRFQPDRVNTEFIQLVDRNHIRMRVWERGSGETWACGTGATASAAAAILM 236 Query: 240 HKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284 T V V++ GG L I ++ H+FMTG A + + G +DI Sbjct: 237 GYTEDEVEVELRGGKLRIRLDRESGHLFMTGPAVEVFRGDIDIPEN 282 >gi|258593056|emb|CBE69367.1| Diaminopimelate epimerase (DAP epimerase) [NC10 bacterium 'Dutch sediment'] Length = 274 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 114/282 (40%), Gaps = 30/282 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F KM G GN +VID R H +I A + D ++L+ A D +R Sbjct: 6 FMKMSGSGNDFVVIDNRNGHLDIEPRTLAERICRRRISVGADGLILVEPSSVA--DFRMR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I+N DGSE + CGNG RCV RF + FET+ GI+ A + Sbjct: 64 ILNADGSEAEMCGNGGRCVARFAEMLGIAGPHMAFETLAGIIRAWVDGSK---------- 113 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + R H ++ G PH + F DL + + G Sbjct: 114 -------VKLQISRPQGIRLHQSIEVDGAAHVVHSINTGVPHVVLF-STDLEAVPVRTLG 165 Query: 185 NLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + HP G N++ A +L +RT+ERGV T ACG+ AS + + L Sbjct: 166 RTIRFHPAFQPAGTNVNFATTVDGRTLAIRTYERGVEDETLACGTGTVASALVAATLGLV 225 Query: 243 NRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279 V V++ G L + N VF GE + ++G+L Sbjct: 226 ASPVRVQVRSGEMLTVSLTGNGPEYEEVFFEGEVRLVYQGEL 267 >gi|304320387|ref|YP_003854030.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503] gi|303299289|gb|ADM08888.1| diaminopimelate epimerase [Parvularcula bermudensis HTCC2503] Length = 282 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 101/261 (38%), Positives = 143/261 (54%), Gaps = 7/261 (2%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINC 69 M+GIGN +++D+RG + DA L+ + DQ++ + + A + I N Sbjct: 17 MDGIGNAFIIVDLRGGG-TLGEDAARGLAEAAEGVRIDQVIGLVAEGEG---AAMTIFNR 72 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGS +CGN RC+ L F T G + A D ++VDMG P L W+ Sbjct: 73 DGSVAGACGNAARCIAWRLMEEQGTDEVIFGTPAGSVTATRAGDHRVTVDMGAPRLGWQD 132 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPLA + + +GP+++ L P VSMGNPH +FFVE D+ L FG L+ Sbjct: 133 IPLAEACEDTRFLDIKVGPIDNPVLWGPSAVSMGNPHCVFFVE-DVAAQRLDRFGPLIEN 191 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVK 249 HP+F EG N+S+A V + LRTWERG GLT ACG+AACA++V++ +T R V Sbjct: 192 HPLFPEGANVSVAEVPDPHHIRLRTWERGAGLTQACGTAACAALVSAVRRRRTGRRADVT 251 Query: 250 MLGGGLLIEWHD-NNHVFMTG 269 + GG L I W + ++HV MTG Sbjct: 252 LPGGTLDISWREADDHVLMTG 272 >gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii] gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii] Length = 293 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 120/293 (40%), Gaps = 36/293 (12%) Query: 21 IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76 +D R + DA+ + + D ++L+ D + I N DGS E Sbjct: 1 VDNRESPEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59 Query: 77 CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 CGNG+RC+ RF+ +S+ T G ++ DG + VDMG PIL+ IP Sbjct: 60 CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGN 185 D VSMGNPH + F E DL L G Sbjct: 120 TLLPG-HFDGTVIQKPLEVDGKTWLVTCVSMGNPHCVTFGEEHEEHLFDLSTLPLEKIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG------------------LTAACGS 227 L H F + N V SL L +R WERG G +T ACG+ Sbjct: 179 LFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLACGT 238 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 ACA+ VA+ + + V + GG L +EW ++ HV+M+G A+ + G L Sbjct: 239 GACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291 >gi|154503276|ref|ZP_02040336.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149] gi|153796270|gb|EDN78690.1| hypothetical protein RUMGNA_01100 [Ruminococcus gnavus ATCC 29149] Length = 285 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 12/275 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + + G+GN LV D + + + L + D I+ + Sbjct: 3 ITLERYHGLGNDYLVYDPNKNELELNEENVKMLCNRNMGLGADGIL--EGPLMEEKQMAV 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG--SISVDM 120 RI N +GS + GNG+R ++ +++K +T T G + + + V M Sbjct: 61 RIWNPNGSIAEKSGNGVRIFAKYLKDAGYVQKKHYTMLTDGGEVEITYLNEEGSRLKVSM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ IP+ ++ + G L VS+GNPH + ++ ++ + Sbjct: 121 GKLSFWSDEIPVIGERRQVINEDMVFG----RTLYPATCVSIGNPHCVIPMQ-EISEPLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G + F +N + V + ++ + T+ERG G T A G+ ACA+ + L Sbjct: 176 CKIGRESERARYFPNHINTELMNVIDMNNIAIETYERGAGYTMANGTGACAAAGVAYKLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 T+ V V M GG L +E D+ +MTG+ Sbjct: 236 LTSNKVIVHMPGGELQVEIGDDWEAYMTGDVFYVA 270 >gi|194015605|ref|ZP_03054221.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061] gi|194013009|gb|EDW22575.1| diaminopimelate epimerase [Bacillus pumilus ATCC 7061] Length = 284 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ ++ AI S D ++LI A V Sbjct: 5 QFTKMHGLGNNYIYVNQMKEQLPEEQLSEIAIRVSSVYTGIGSDGMILICPSDIAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117 +RI N DGSE ++CGNG+RCV +++ TF+ + + ++ ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDGHVHLVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P + + +P+ + N VSMGNPH +F++E D+ Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINETLDFG---TTTLNGTAVSMGNPHIVFYLE-DIEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ KH MF EGVN+ V S L R WERG G+T ACG+ ACA+ V++ Sbjct: 179 APLDTIGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTI 238 Query: 238 CLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +V + GG L+I W DN HV MTG A+ +G + Sbjct: 239 VNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284 >gi|157693630|ref|YP_001488092.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032] gi|167012032|sp|A8FH15|DAPF_BACP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157682388|gb|ABV63532.1| diaminopimelate epimerase [Bacillus pumilus SAFR-032] Length = 284 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 17/286 (5%) Query: 7 DFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ + ++ AI S D ++LI A V Sbjct: 5 QFTKMHGLGNNYIYVNQMKEQLPEEKLSEIAIQVSSIYTGIGSDGMILICPSDVAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET------IRGILVAKENRDGSIS 117 +RI N DGSE ++CGNG+RCV +++ TF+ + + +++ ++ Sbjct: 63 MRIFNNDGSEGKNCGNGLRCVAKYVYEHQIVTDTTFQIETLSGLVEATVHVQDDHVHLVT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+P + + +P+ + N VSMGNPH +F++E D+ Sbjct: 123 VDMGKPRFEKEAMPMLGEPASTTINEPLDFG---TTTLNGTAVSMGNPHIVFYLE-DIEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G ++ KH MF EGVN+ V S L R WERG G+T ACG+ ACA+ V++ Sbjct: 179 APLDTLGPIIEKHDMFPEGVNVEFVEVVSETELHFRVWERGSGITQACGTGACAAAVSTI 238 Query: 238 CLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + +V + GG L+I W DN HV MTG A+ +G + Sbjct: 239 VNGQAKKETDMTVHLAGGDLIIRWKDNEHVLMTGPAETICDGTFYL 284 >gi|149372337|ref|ZP_01891525.1| diaminopimelate epimerase [unidentified eubacterium SCB49] gi|149354727|gb|EDM43290.1| diaminopimelate epimerase [unidentified eubacterium SCB49] Length = 257 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 38/283 (13%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +F K +G GN ++ID R T D ++L+ + DA++D + Sbjct: 4 NFYKYQGTGNDFVIIDNRELTFPKKDTKLIALMCDRKFGVGADGLILLEN--DATLDFKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DG+E CGNG RC+V F + + TF+ I G A DG Sbjct: 62 VYYNADGNESSMCGNGGRCIVDFAKQIGVINSATTFQAIDGPHEAVVKADG--------- 112 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 I + L N ++ G+PH + VE +L ++++ + Sbjct: 113 -----------------VSLKMIDVDDVNVLENYMFLNTGSPHHVQLVE-NLKNFEVFTQ 154 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 G + EG N++ S ++ +RT+ERGV T +CG+ A +A +K Sbjct: 155 GKEIRNSIYGDEGANVNFVEQESEDTFKVRTYERGVEDETLSCGTGVTAVAIALHKTNKL 214 Query: 243 -NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 V++ GG L +++ + +VF+ G A ++G + Sbjct: 215 KENQVNLMTEGGLLQVKFDFTDGVYSNVFLEGPATLVFKGVWE 257 >gi|313205931|ref|YP_004045108.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868] gi|312445247|gb|ADQ81602.1| diaminopimelate epimerase [Riemerella anatipestifer DSM 15868] gi|315022243|gb|EFT35271.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-YM] gi|325336628|gb|ADZ12902.1| Diaminopimelate epimerase [Riemerella anatipestifer RA-GD] Length = 253 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 36/282 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 M+ F K +G GN ++++ R + + + + I L D ++L+ + D D Sbjct: 1 MLTFYKYQGTGNDFIMVNNRQMNFDKSKENIAHLCHRRFGVGADGLILLENCPD--TDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + TF I G+ A+ N + Sbjct: 59 MVYYNADGAESTMCGNGGRCLVAFAHFLGVFENKCTFNAIDGLHEAEVNGN--------- 109 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I N + FV++ G+PH + FV + Sbjct: 110 -----------------VVKLKMIDVSNISRDASDFVLNTGSPHYVRFVSEVEKLDVYKE 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + EG+N++ E+L +RT+ERGV T +CG+ AS + S K Sbjct: 153 GKQVRYSEKYQQEGINVNFVEKIDDETLFVRTYERGVEDETYSCGTGVTASAL-SFIQDK 211 Query: 242 TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 +V++K LGG L + + +V++ G A + ++G + Sbjct: 212 DKNSVNIKTLGGNLKVYAEKKDAGFCNVWLEGPAVQVFKGTI 253 >gi|225375607|ref|ZP_03752828.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM 16841] gi|225212586|gb|EEG94940.1| hypothetical protein ROSEINA2194_01232 [Roseburia inulinivorans DSM 16841] Length = 279 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 69/288 (23%), Positives = 115/288 (39%), Gaps = 16/288 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 MV K G+GN L+ D + + I L + D I+ + Sbjct: 1 MVTLKKYHGLGNDYLIYDPNQNRELLQERQIQLLCRRNTGVGADGIL--SGPVLENEKIK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK---ENRDGSISV 118 +RI N DGSE + GNG+R ++ +K K + T G + + E+ Sbjct: 59 VRIFNPDGSEAERSGNGIRIFSKYLKDAGYVKEKCYELWTKAGPVQVEFLDEDASRMKVD 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + + D ++ F N VSMGNP+ + +E ++ Sbjct: 119 MGYAAFGADSIHAVGFEGDMINESVFFCDNF-----YNITCVSMGNPNCVVMME-EISKN 172 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G + F +N+ + V E++ + +ERG G T A G+ ACA+ A+ Sbjct: 173 KALHLGPYVENSKYFPNRINMQLCHVVDRENIQIEIYERGAGYTYASGTGACAAASAAHK 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 L V V M GG LL+E+ +++ VFMTG + G + + + Sbjct: 233 LGLVGNRVQVHMQGGDLLVEFAEDDRVFMTGPV--VYIGSITLAENFF 278 >gi|288819073|ref|YP_003433421.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] gi|288788473|dbj|BAI70220.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] gi|308752656|gb|ADO46139.1| diaminopimelate epimerase [Hydrogenobacter thermophilus TK-6] Length = 279 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 76/290 (26%), Positives = 122/290 (42%), Gaps = 34/290 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGC---------HDNITSDAINALSTDDNTHFDQIMLIHDFQ 56 + F K+ G GN +V D R + + I + D ++LI Sbjct: 1 MRFVKLHGSGNDFVVFDNREGEVYQFIKSVNITLKDFVIKVCAPHTGVGADGVILIEHPD 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDG- 114 D D + N DGS CGNG RC VRF + FET+ G++ A+ +G Sbjct: 61 DPQNDFKWQFFNSDGSVAGMCGNGSRCAVRFAYENGIAGEYVRFETLVGVIQAQVLEEGK 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + V + EP + + + + ++ G PH + V+ D Sbjct: 121 RVKVLLTEPHSYRE-----------------MQIKVNGTEISGSFINTGVPHFVMLVD-D 162 Query: 175 LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 L ++D+ ++G + H F G N++ + S S+ +RT+ERGV T ACG+ A AS Sbjct: 163 LENFDVFTYGRAIRFHEAFSPGGTNVNFVKTLSDGSISVRTYERGVENETLACGTGATAS 222 Query: 233 VVASGCLHKT-NRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 + + + V VK GG L I++ VF+ G K ++G L Sbjct: 223 AIVAYQKGLVKKKPVEVKTRGGETLRIDFDSQLKKVFLEGSVYKVFDGFL 272 >gi|302526201|ref|ZP_07278543.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302435096|gb|EFL06912.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length = 286 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 116/279 (41%), Gaps = 9/279 (3%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVD 61 S + F KM G GN +V+D+R + D AL+ D I+ I + + Sbjct: 2 SPTLAFTKMHGCGNDFVVLDLRDAPAP-SPDLCRALADRHTGVGCDLILGIRPPRSTTAV 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET--IRGILVAKENRDGSISVD 119 A I +G CGNG RCV +L + +FE G K D S+ Sbjct: 61 AAFEIWTGEGESSLQCGNGARCVASWLVRAGLARPPSFEIDSPSGTHPVKVLGDNEFSIG 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + IPL RD ++ + S GNPHA+ V+ D+ Sbjct: 121 LTVPRFAPEEIPLTG---FAGRDGWYEAVLADGTSVRFAAASTGNPHAVLEVD-DVGGGS 176 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 +A G + P VN+ A V + + + LR E G G T ACGS ACA+ Sbjct: 177 VARLGPAVRALPGLPPTVNVGFAEVVARDRIRLRVHEFGAGETLACGSGACAAAAVLIRA 236 Query: 240 HKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEG 277 + R V+V++ GG L + W + + + G A +EG Sbjct: 237 GRLGRDVAVEVPGGELRVGWPSEEEPIVLAGPAVTVYEG 275 >gi|94265419|ref|ZP_01289171.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] gi|93454076|gb|EAT04411.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] Length = 279 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 114/288 (39%), Gaps = 27/288 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R T+ A+ + D ++LI + + D Sbjct: 5 ITFTKMSGAGNDFILIDHRRPLLADTAAQGFARAVCERKFSVGADGLILIENSE--EADF 62 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS + CGNG RC RF G + + G+ + Sbjct: 63 SWQFFNADGSLAEMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISGTAVLLTMT 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P +L H+ L V G PHA+ F + ++ + Sbjct: 123 PPGQCRL-------------NLHLAGPTGEEL-TLHTVDTGVPHAVLFCD-EIATVPVKE 167 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 +G+ HP F G N++ + L +RT+ERGV T ACG+ A A+ + + L Sbjct: 168 WGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVASRLG 227 Query: 241 KTNRAVSVKMLGG-GLLIEWHDNNH----VFMTGEAKKEWEGKLDIKT 283 + +V GG L+I + D++ V + G A ++G L + Sbjct: 228 RAVSPTTVVTAGGEELVIHYRDSDEQFQDVRLEGPADFIYQGSLHPEA 275 >gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii] gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii] Length = 293 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 85/293 (29%), Positives = 120/293 (40%), Gaps = 36/293 (12%) Query: 21 IDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS--EVQS 76 +D R + DA+ + + D ++L+ D + I N DGS E Sbjct: 1 VDNRESAEPKLSKEDAVRICNRNFGVGSDGVILVMPGVH-GCDYTMHIYNPDGSQPEANM 59 Query: 77 CGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 CGNG+RC+ RF+ +S+ T G ++ DG + VDMG PIL+ IP Sbjct: 60 CGNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIP 119 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE------DDLYHYDLASFGN 185 D VSMGNPH + F E DL L G Sbjct: 120 TLLPG-HFDGTVIQKPLEVDGKTWLVTCVSMGNPHCVTFGEEHEEHLFDLSTLPLEKIGP 178 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG------------------LTAACGS 227 L H F + N V SL L +R WERG G +T ACG+ Sbjct: 179 LFENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLACGT 238 Query: 228 AACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 ACA+ VA+ + + V + GG L +EW ++ HV+M+G A+ + G L Sbjct: 239 GACAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTL 291 >gi|163782547|ref|ZP_02177544.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1] gi|159882120|gb|EDP75627.1| diaminopimelate epimerase [Hydrogenivirga sp. 128-5-R1-1] Length = 278 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 32/289 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--------SDAINALST-DDNTHFDQIMLIHDFQ 56 +DFAK++G GN ++ID R + I L D ++LI + + Sbjct: 1 MDFAKLQGSGNDFILIDNRDGKVYRKIEELGVCLKEFILKLCEPHRGVGADGLILIEEPE 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGS 115 D + D + N DGSE + CGNG RC VRF +FET+ G++ A+ G Sbjct: 61 DNANDFRWQFFNSDGSEAEMCGNGSRCAVRFCYDLGIVDDRVSFETLAGVIRAEVLEGGK 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 P + ++ G PH + V+ D+ Sbjct: 121 RVKVQLTPPSEP----------------LEKTLRVEGTDLEGVFINTGVPHFVVPVK-DI 163 Query: 176 YHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233 D+ G + H +G N++ + +++ +RT+ERGV T ACG+ A A Sbjct: 164 DKVDVKKLGRAIRFHEEFQPKGTNVNFIEAVAEDTIKIRTYERGVESETLACGTGATAGA 223 Query: 234 VASGCLHKTNR-AVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 + + +R V V L +++ +N VF+ G K +EG L Sbjct: 224 IVAYLKGLVSRKPVQVITKSEEVLGVDFDENFREVFLNGAVYKVFEGTL 272 >gi|284164080|ref|YP_003402359.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511] gi|284013735|gb|ADB59686.1| diaminopimelate epimerase [Haloterrigena turkmenica DSM 5511] Length = 276 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 119/281 (42%), Gaps = 14/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQD-ASVDAFI 64 V F K G GN L+I + + A DD D I+ + + + Sbjct: 3 VPFQKYHGTGNDFLIIQADEYVPDRGALAERECDRDDGVGADGILYLALEERFHPPRVIM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 ++ DG+ CGNG RC + S +T G L A +G I+++MG P Sbjct: 63 TLVQPDGATAPMCGNGARCAADWAMEETGSDSVMIDTQAGTLRADRTDEG-ITIEMGTPT 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ + + + +V+ G PHA+ FV+D DL + Sbjct: 122 FAPDEVPVRADEQVFEEE---------IEGLEVTMVNTGVPHAVAFVDDV-DDVDLEAVA 171 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243 + F G N+++A D RT+ERGV T +CG+ A A V + L +T+ Sbjct: 172 PRVRYADAFPVGTNVTLASPDGEGGFDQRTYERGVEGETDSCGTGAVAIAVVARRLGRTD 231 Query: 244 -RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V V GG L + ++D + + G + E++G++ +++ Sbjct: 232 ADPVDVYPPGGDLRVSFNDRGNATLAGPVEHEFDGEVTVRS 272 >gi|94969649|ref|YP_591697.1| diaminopimelate epimerase [Candidatus Koribacter versatilis Ellin345] gi|94551699|gb|ABF41623.1| diaminopimelate epimerase [Candidatus Koribacter versatilis Ellin345] Length = 260 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 110/276 (39%), Gaps = 19/276 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + FAK GN LVID DN + + + D + I + D R Sbjct: 4 IPFAKASACGNDFLVIDFAHAGDNPSELSRRLCDRHNGVGADGVEWILP--TSEADIEAR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 +IN DGSE + GNG RCV ++ T G+ + S + + Sbjct: 62 LINADGSEAEVSGNGTRCVAACISDHTGATKIRILTGAGVKACELTVHNGTSFEFKAAMG 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 I + + +S GNPH + FVE+ + + + Sbjct: 122 KP-EIAGELTVKTRHHET------------TGIQLSTGNPHFVIFVEEFEEGWQV--LAD 166 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 +A+ P F G N+ +V SLD+R +ERGVG T + G+ +CAS VA+ K Sbjct: 167 SVARTPHFPLGTNIEFVKVLDRHSLDVRLYERGVGETQSSGTGSCASAVAAIHSGKCESP 226 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V GG +EW + + +TG A G+ I Sbjct: 227 VRVATPGGAQTVEW--SGEITLTGPATIVCTGEFFI 260 >gi|149918260|ref|ZP_01906752.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1] gi|149821020|gb|EDM80427.1| diaminopimelate epimerase [Plesiocystis pacifica SIR-1] Length = 286 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 117/291 (40%), Gaps = 23/291 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAI--------NALSTDDNTHFDQIMLI 52 M ++ + F K+EG+ N LV+D+R + + + D ++LI Sbjct: 5 MGATPLPFVKVEGLSNDFLVVDLRDAGPAVLDETVAWAREHAPRVCDRRRGVGGDGLLLI 64 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 Q A A + ++N DGS + CGNG+RCV L R +S Sbjct: 65 GPGQSAGAAASMIVVNADGSRPEMCGNGLRCVAAELAPRSDERSAFVVDTDAGPRP---- 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 P + + ++ + R V +GNPHAI FV+ Sbjct: 121 ----CAVTRAPGSASARVRVEMGTRRITGE---HTLELEDAPRTFVAVDVGNPHAIAFVD 173 Query: 173 DDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 LA + N+ AR + S+ L WERGVG+TAACG+ AC Sbjct: 174 ASEDPEALARSLGPAIELHPIFAPAKTNVEFARFEADGSVTLWVWERGVGITAACGTGAC 233 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A++ A+ +AV +++ GG L IE + + MTG A+ + G Sbjct: 234 ATLAAAIHRDLATVGQAVDLRLPGGPLTIEQDEAGAIVMTGPARAVFRGHW 284 >gi|297619464|ref|YP_003707569.1| diaminopimelate epimerase [Methanococcus voltae A3] gi|297378441|gb|ADI36596.1| diaminopimelate epimerase [Methanococcus voltae A3] Length = 318 Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 29/304 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +V + + + + N + + D ++ + A D Sbjct: 13 LEFTKMHALGNDYIVFNELDGIIVPEELKGEFSNKICKRGFSVGADGVIFVQVPSTADYD 72 Query: 62 A--FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRD---- 113 A RI N DGSE + CGNG+RC +++ R K+ ++ G+ +++ + Sbjct: 73 ADVRFRIFNSDGSEAEMCGNGIRCFSKYVHERTNFKNNPLKVQSEGGLRISEMEFNESNN 132 Query: 114 ---GSISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG-- 163 ++ V MG P K IP+ + M+ + + +S+ Sbjct: 133 EVVKNVRVYMGNPKYAMKDIPMIIEEIGEDLEFMNLELPVNCECLKKIGKEALKLSVANV 192 Query: 164 --NPHAIFFVEDDLYHYDLAS----FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 I E+DL + G + H F E +N+ + + + + + TWER Sbjct: 193 GNPHTVIILQENDLNVEFIRKNLNELGAYMECHSAFPEKINVHFINLLNEKEIQIITWER 252 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWE 276 G G T ACG+ +SV L KT V + GG L IE +N + ++M G A+ ++ Sbjct: 253 GAGYTTACGTGTTSSVAICEKLGKTGCKVLAHLDGGDLEIEIMNNGNDIYMKGGAEISYD 312 Query: 277 GKLD 280 G L Sbjct: 313 GILK 316 >gi|228473684|ref|ZP_04058434.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624] gi|228274898|gb|EEK13713.1| diaminopimelate epimerase [Capnocytophaga gingivalis ATCC 33624] Length = 353 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 45/295 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++ F K +G GN ++ID R T D ++L+ D D Sbjct: 87 RVIHFYKYQGTGNDFILIDNRLNTFPKEDTKLVAQLCERRFGVGGDGLILLE--DDPEHD 144 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 + N DG+ CGNG RC+V F ++++ TF G+ A Sbjct: 145 FSMIYYNSDGNPSSMCGNGGRCIVAFAQKLGVIQKEETTFSAPDGLHKAL---------- 194 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 F + ++ ++ G+PH + V++ Sbjct: 195 ----------------FKNNLIHLQMQDVSHIEKVKKGLFLNTGSPHYVEVVKNLDSMDV 238 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + P EGVN++ +RT+ERGV T +CG+ A A+ +A Sbjct: 239 KKKGAEIRYGVPFNIEGVNVNFVEPIDENHFKVRTYERGVEDETYSCGTGATATAIAMYK 298 Query: 239 LHKTNRA-VSVKMLGGGLLIEW-----------HDNNHVFMTGEAKKEWEGKLDI 281 KT + ++ GG L + + + +V++ GEA +EG + + Sbjct: 299 GGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEANFVFEGTITV 353 >gi|21224138|ref|NP_629917.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)] gi|6014918|sp|O69969|DAPF_STRCO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2995301|emb|CAA18330.1| diaminopimelate epimerase [Streptomyces coelicolor A3(2)] Length = 289 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 116/307 (37%), Gaps = 39/307 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ A+ AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHP 59 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109 A + F+ N DGS + CGNG+R R+L T G+ Sbjct: 60 EARGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G ++V MG +L + ++ V+MGNPHA+ Sbjct: 120 IAKNGDVTVGMGRALLPAGDVEVSV----------------GEREWPARNVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV DL H A + +GVN+ + +R ERG G T +CG+ A Sbjct: 164 FV-ADLDHAGDLYAPPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A + V + GG L+I + + MTG A EG+ D Sbjct: 223 CAVAVATARRDGLDPAATGTPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD-- 280 Query: 283 TGKWIKK 289 W++ Sbjct: 281 -SAWLEG 286 >gi|15669306|ref|NP_248111.1| diaminopimelate epimerase [Methanocaldococcus jannaschii DSM 2661] gi|2494042|sp|Q58519|DAPF_METJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|1591758|gb|AAB99120.1| diaminopimelate epimerase (dapF) [Methanocaldococcus jannaschii DSM 2661] Length = 295 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 90/291 (30%), Positives = 135/291 (46%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTD-DNTHFDQIMLIHDFQDASVD 61 ++F KM +GN +VI+ + + + D ++ I D Sbjct: 1 MEFTKMHALGNDYIVINEFDGEKVKEEEKAEFSRKICRRGFSVGADGVIFIQKPTSDEYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGS----I 116 RI N DGSE + CGNG+RC +++ R+ +K+ ET G+ V++ +G I Sbjct: 61 VRFRIFNSDGSEAEMCGNGIRCFSKYVYERIMKKNPLKVETKGGLRVSEMEIEGDEVKKI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVED 173 V MG P K IP+ K D + + +L VV++GNPHA+ FVED Sbjct: 121 KVYMGVPKFKLKDIPMVVDGYKEDDEFLNGELKLKNPYLPKVKLSVVNVGNPHAVIFVED 180 Query: 174 -----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D L G + H F E +N+ +V + + + TWERG G T ACG+ Sbjct: 181 NNIDLDFVREHLDVIGKEIEHHEAFPERINVHFVKVLNPNEIRIVTWERGAGYTTACGTG 240 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ASV+ + L KTN V + GG L IE D+ V+M G+A ++ KL Sbjct: 241 TTASVIMAHKLGKTNNRVLAHLDGGDLEIEIKDDG-VYMIGDAVMVYDAKL 290 >gi|317152316|ref|YP_004120364.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2] gi|316942567|gb|ADU61618.1| diaminopimelate epimerase [Desulfovibrio aespoeensis Aspo-2] Length = 283 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 118/282 (41%), Gaps = 19/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT---SDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN +VID R T A + D + + D + +D Sbjct: 8 VPFHKMQGCGNDFVVIDNRVARVPATVMADWAKKICARAFGVCADGLFFLEDPDEPGLDY 67 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGN RC + + F T G + AK DG + + Sbjct: 68 RWHFYNSDGSRAEMCGNASRCAGKLAHALGLAPAEHVFGTDAGPIRAKVLLDGPDAGRVK 127 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + K + S D + G PHA + DD+ ++ Sbjct: 128 VQLTPPKGLETNISLDVDN------------TPMTVHFADTGVPHA-VVLVDDVAAVNVR 174 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L HP F G N++ A+V ++ LRT+ERGV T ACG+ ACA+ + + L Sbjct: 175 ELGRSLRFHPRFAPAGTNVNFAQVKDRSTMLLRTFERGVEDETYACGTGACATQLVANAL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T+ + GG +L + +NN +F+ G A+ ++G+L + Sbjct: 235 GLTDPRADLTTTGGEILTVFLENNTIFLQGAAELTFKGELYL 276 >gi|284036374|ref|YP_003386304.1| diaminopimelate epimerase [Spirosoma linguale DSM 74] gi|283815667|gb|ADB37505.1| diaminopimelate epimerase [Spirosoma linguale DSM 74] Length = 257 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 37/285 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN--ALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF K +G GN ++ID R A D ++L+ + D D Sbjct: 1 MDFFKYQGTGNDFILIDDRARTFPAADQAFIEHLCHRRFGIGADGLILLQN--DPEYDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+VRF S T F + G +A + Sbjct: 59 MVYFNADGAEGSMCGNGGRCIVRFAHDLGLFDSETRFLAVDGEHLAMVSD---------- 108 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I L + ++ G+PH + FV+D +A Sbjct: 109 -----ESISLK-----------MTDVTGIEDRQGLTFLNTGSPHVVRFVDDLESFDVVAE 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 ++ P G N++ A+V ++ +RT+ERGV T +CG+ A + + Sbjct: 153 GRSIRYSEPFQPGGTNVNFAQVVDENTVFVRTYERGVEDETYSCGTGVTAVALVAHQQLG 212 Query: 242 TNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDI 281 V ++ LGG L + ++ + +++ G AK+ + G + + Sbjct: 213 MPAPVFIRTLGGNLRVSFNPQPNGGFDSIYLIGPAKRVFAGTITV 257 >gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753] Length = 1355 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 27/300 (9%) Query: 1 MQSSMVD--FAKMEGIGNKILVIDMRGCHDNITSDA-INALSTDDNTHFDQIMLIHDFQD 57 M++ + F KM G GN + D N + D ++L+ Sbjct: 1064 MRTEKIKANFTKMHGCGNDYIYFDCFQHDINNPEALSVRLSDRHYGIGGDGVILVCPSDV 1123 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENRD 113 A D +R+ N DGSE + CGNG+RCV +FL ++ T ET+ GI + Sbjct: 1124 A--DGKMRMFNLDGSEGKMCGNGIRCVGKFLYDHGLVDPAKEKITVETLSGIKTLWPIYN 1181 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF--- 170 M + +L P D + N G + + Sbjct: 1182 DRKVCAMKVDMGKAELTPALIPVDASKLP-----DPKADRIVNAPYTVDGVEYHVTCVSM 1236 Query: 171 -------VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 ++D+ D+ G +F E VN RV +L +R WERG G T Sbjct: 1237 GNPHCVVFKNDVETMDIEKIGPAFETSELFPERVNTEFIRVLDDHTLKMRVWERGSGETW 1296 Query: 224 ACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ACG+ ACA+ VA+ K + ++VK++GG L+I + D+ V+MTG A +EG ++I Sbjct: 1297 ACGTGACAAAVAAVENGYCKKDTDITVKLIGGDLVIRYTDD-TVYMTGNAVTVYEGVVEI 1355 >gi|255534747|ref|YP_003095118.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10] gi|255340943|gb|ACU07056.1| Diaminopimelate epimerase [Flavobacteriaceae bacterium 3519-10] Length = 262 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 114/285 (40%), Gaps = 36/285 (12%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVDA 62 ++ F K G GN ++ID R + + + D ++L+ +DA+ D Sbjct: 7 HLMTFYKYHGTGNDFVMIDNRNLLFSKDKNLVSRLCDRRFGIGGDGLILLE--EDAAADF 64 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMG 121 + N DG+E CGNG RC+V F + TF I G+ A+ Sbjct: 65 RMVYYNSDGNESTMCGNGGRCIVAFAKFLDIFDVNTTFMAIDGLHEAEITNG-------- 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +D V++ G+PH + +V D A Sbjct: 117 -----------TVKLKMIDVQSIEKDG-------ECSVLNTGSPHFVQWVADLGNLDVRA 158 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 + + +EG+N++ A S + +RT+ERGV T +CG+ A A+ + Sbjct: 159 NGNKIRNSATYRNEGINVNFAEKISDSQIFVRTYERGVEDETFSCGTGATAAALDFLKNG 218 Query: 241 KTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 V VK+LGG L I N +++ G A++ + G++++ Sbjct: 219 -NRNEVEVKVLGGNLKIYAKQNAGSFTDIWLEGPAEQVFTGEINL 262 >gi|662868|emb|CAA87006.1| diaminopimelate epimerase [Nostoc sp. PCC 7120] Length = 284 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 11/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F K +GN LVI+ + +T + I + D +L+ + Sbjct: 1 MKFYKYHALGNDYLVINPQDLKFPLTPEKIKIICHRNFGIGSDG-ILLGPLASTKAQFAL 59 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI N DGSE + GNG+R + + K F+ ET GI+ + G + V+MG Sbjct: 60 RIFNPDGSEAEKSGNGLRIFSRYLWDMGLVDEKPFSIETAGGIVESAIKDAGKTVQVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ +++ + + ++GNPH + ++ D+ Sbjct: 120 KVSFWSRDIPVIGDDREVIQEKIFLD----EGIFTFCAATIGNPHCVILLD-DINSEVAR 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +FG + +P+F N+ +V ++ + WERG G T A ++ A+ + L Sbjct: 175 NFGPIFEGYPLFPNRTNVQFMKVLDRSTIQIEIWERGAGYTLA-SGSSSAAAATAHKLGL 233 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + VKM GG +LI+ D+ H+ MT K +G+L Sbjct: 234 CDSKIIVKMPGGDILIQIKDDFHISMTDSVTKLAQGEL 271 >gi|256784782|ref|ZP_05523213.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289768669|ref|ZP_06528047.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289698868|gb|EFD66297.1| diaminopimelate epimerase [Streptomyces lividans TK24] Length = 289 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 116/307 (37%), Gaps = 39/307 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ A+ AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPENALDLPPAAVAALCDRRAGLGGDGLLHVVRSAAHP 59 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109 A + F+ N DGS + CGNG+R R+L T G+ Sbjct: 60 EARGMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQHAGHVTEGDLAVATRGGVKTVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G ++V MG +L + ++ V+MGNPHA+ Sbjct: 120 IAKNGDVTVGMGRALLPAGDVEVSV----------------GEREWPARNVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV DL H A + +GVN+ + +R ERG G T +CG+ A Sbjct: 164 FV-ADLAHAGDLYAPPSHAPAGAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A + V + GG L+I + + MTG A EG+ D Sbjct: 223 CAVAVATARRDGLDPAATGIPATYTVDVPGGTLVITERPDGEIEMTGPAVIVAEGEFD-- 280 Query: 283 TGKWIKK 289 W++ Sbjct: 281 -SAWLEG 286 >gi|326335390|ref|ZP_08201578.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692455|gb|EGD34406.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 268 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 114/296 (38%), Gaps = 47/296 (15%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 +++ F K +G GN ++ID R T D ++++ + D+ D Sbjct: 2 TVIHFYKYQGAGNDFIMIDNRMNTFPKEDTKLIARLCERRFGVGADGLIILEN--DSKTD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 + N DG+ CGNG RC+V F + + TF G+ A Sbjct: 60 FSMIYYNSDGNPSTMCGNGGRCIVAFAQKLGVIDKTETTFSAPDGLHKAF---------- 109 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 F + ++ ++ G+PH + V+ DL D Sbjct: 110 ----------------FKNDLIHLQMQDVSDIEKVKKGLFLNTGSPHYVEIVK-DLDSMD 152 Query: 180 LASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + P EGVN++ + +RT+ERGV T +CG+ A A+ +A Sbjct: 153 VKKKGAEIRYGVPFNIEGVNVNFVEPIADNRFKIRTYERGVENETYSCGTGATATAIAMH 212 Query: 238 CLHKTNRA-VSVKMLGGGLLIEW-----------HDNNHVFMTGEAKKEWEGKLDI 281 KT + ++ GG L + + + +V++ GEA+ +EG + I Sbjct: 213 KTGKTKAEYIILETKGGNLEVTFEVKKEFLGLKIKEYTNVWLIGEAEFVFEGTISI 268 >gi|260889902|ref|ZP_05901165.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254] gi|260860508|gb|EEX75008.1| diaminopimelate epimerase [Leptotrichia hofstadii F0254] Length = 283 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 10/280 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN +++ R + + A D ++++ Sbjct: 1 MLKFEKYQGAGNDFIIVTERELIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 F+ N DGS+ CGNG+RC + ++ F +T+ G L+ + N D Sbjct: 60 --FMFFFNGDGSQAPMCGNGIRCFSHYLVNNHLVEGDEFVVKTVPGDLMIRVNYDEEKDD 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + + + + + MG H++ FV D + Sbjct: 118 FSARVNMGKPVFNVKDLINTEKEQFLREKINVDGTEIEISYIFMGTDHSVIFVNDFNDYN 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +F + VN++ +V + +++ TWERG G T ACG+ AS V + Sbjct: 178 IDEFGKKIENYTDLFPKKVNVNFVKVHDRKHMEVITWERGAGRTLACGTGVTASAVLAKT 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V+VK+ GG L+IE+ + FMTG ++K EG Sbjct: 238 FGFVDEKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277 >gi|126642666|ref|YP_001085650.1| diaminopimelate epimerase [Acinetobacter baumannii ATCC 17978] Length = 240 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 7/240 (2%) Query: 45 HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETI 102 FDQ++++ D RI N DGSEV+ CGNG+RC + + T +T Sbjct: 2 GFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHERHLTNKTNITVQTK 61 Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 GI+ + ++G + V+MG P IP + N VV+M Sbjct: 62 AGIVKPELGQNGWVRVNMGYPKFLPNEIPFVADEPEALYTLELANDQNISID----VVNM 117 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNPHA+ V D+ D+A G + H F E VN +V + + LR +ERGVG T Sbjct: 118 GNPHAVTIV-PDVLTADVAGIGPQVELHKRFPERVNAGFMQVIDDKHVRLRVFERGVGET 176 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 ACG+ ACA+ V+ +V V++ GG L IEW + + V+MTG ++G+LD++ Sbjct: 177 LACGTGACAAAVSGMRRGLLANSVEVELAGGKLQIEWQEGDVVWMTGPTTHVYDGRLDLR 236 >gi|229130197|ref|ZP_04259156.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4] gi|228653130|gb|EEL09009.1| Diaminopimelate epimerase [Bacillus cereus BDRD-Cer4] Length = 268 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGESET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L Sbjct: 179 NVEFIEILNEDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263 >gi|218510924|ref|ZP_03508802.1| diaminopimelate epimerase [Rhizobium etli Brasil 5] Length = 278 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 83/274 (30%), Positives = 126/274 (45%), Gaps = 15/274 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 DF KM G+ +++D+RG + I + L F++++++ D +DA+ + Sbjct: 4 DFQKMHANGDDFVIVDLRGQENIINRNIAQRLGDRNRGIGFNKLVVMGDCEDAAT--QLT 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS + +CG+ R V L +T RG+L DG ISVDMG+P+L Sbjct: 62 FWNSDGSMLDACGSATRGVAWKLAGNRLFFRRR-QTNRGLLTCFGELDGRISVDMGKPLL 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W+ +P+A+ D + P SMGNPH FF+E DL D G Sbjct: 121 HWRDVPIAQEADTLKL----------PLPGAPSACSMGNPHCTFFIE-DLEAVDAKMRGL 169 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA 245 HP+F + N+ +V S + LR WERG G+ GS +C +VV + Sbjct: 170 EFESHPLFPQKTNVHFVQVISPTRIRLRIWERGGGIPLGSGSCSCGAVVNGIRRGLLTSS 229 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V+ GG + + W VF+TG + G Sbjct: 230 VDVECDGGTVAVRWDGYGGVFLTGPVDPNFCGTW 263 >gi|323699307|ref|ZP_08111219.1| diaminopimelate epimerase [Desulfovibrio sp. ND132] gi|323459239|gb|EGB15104.1| diaminopimelate epimerase [Desulfovibrio desulfuricans ND132] Length = 283 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 113/283 (39%), Gaps = 19/283 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS---DAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V F KM+G GN +VID R +++ A + D + + + + S+ Sbjct: 8 VPFYKMQGCGNDFVVIDNRELGVPVSAMADWAKAVCARAFGVCADGLFFLENADNPSLAF 67 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGN RC + + F T G + AK DG Sbjct: 68 RWHFYNSDGSRAEMCGNASRCAAKLAHAIGLAPAELAFGTDAGPIRAKVLLDG------- 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + L + G PH + FV+ D+ D+ Sbjct: 121 -PEEGRVKVQLTPPLRTETDIVIDVDGS----PLTVHFTDTGVPHTVVFVD-DVKSVDIM 174 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239 G + H F G N++ A+V +++ LRT+ERGV T ACG+ A A+ + + L Sbjct: 175 DLGPKIRYHERFAPAGTNVNFAQVLDEKTMLLRTYERGVEAETYACGTGAAATQLLAHTL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 T + G +L + +N VF+ G A+ ++G+ +K Sbjct: 235 GLTGDHADLTTTGNEVLTVFLENGMVFLQGAAELTFQGEFYLK 277 >gi|254495530|ref|ZP_05108454.1| Diaminopimelate epimerase [Polaribacter sp. MED152] gi|85819886|gb|EAQ41043.1| Diaminopimelate epimerase [Polaribacter sp. MED152] Length = 256 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 115/285 (40%), Gaps = 40/285 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R +D I+ + D I+LI +DA D Sbjct: 3 LPFLKYQGTGNDFVMIDNRTKIFPKKNTDKISEICDRHFGIGADGIILIE--EDADYDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGSE CGNG RC V F +M + TF + G A N D Sbjct: 61 MIYYNADGSET-FCGNGARCAVAFAKHLKMIDQETTFTAVDGSHFASVNNDF-------- 111 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I N G H + V +DL Y + Sbjct: 112 ------------------ISLQMIDVSEFQVKENSIFTYTGTQHHVEMV-NDLEEYPVYE 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + + G N++ A+ + + +RT+E+GV T ACG+ A +A K Sbjct: 153 NGRKIRN-SYENPGSNVNFAQQLNDTTFRVRTYEKGVENETLACGTGVTAVALAMHKTGK 211 Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 TN +S+ + GG L + + + N +VF+ G A ++G+++I Sbjct: 212 TNSNNISLPVEGGLLEVSFKEENGVYTNVFLKGPATFIFKGEIEI 256 >gi|332519676|ref|ZP_08396140.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4] gi|332044235|gb|EGI80429.1| diaminopimelate epimerase [Lacinutrix algicola 5H-3-7-4] Length = 259 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 111/283 (39%), Gaps = 39/283 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN + ID R N T + D ++L+ + DA+ D + Sbjct: 5 FYKYQGTGNDFVFIDNRQEQFNKNNTKLIAHLCDRRFGIGADGLILLEN--DATADFKMV 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG+E CGNG RC+V F TF I GI A N Sbjct: 63 YFNADGNESTMCGNGGRCIVAFAEKLNIINGKTTFNAIDGIHEATINDGF---------- 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++ ++ G+PH + V +++ +D+ + G Sbjct: 113 ----------------VKLKMQDVDTIKVNKDHTFLNTGSPHHVALV-NNIKQFDVKTEG 155 Query: 185 NLLAKHPMFS-EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + ++ G N++ + +RT+ERGV T +CG+ A +A L K Sbjct: 156 AAIRYGDLYDAAGTNVNFVEPLDNSTFSVRTYERGVEDETLSCGTGVTAVALAMHTLKKA 215 Query: 243 NR-AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLD 280 N VS+ + GG L + + ++++ G A ++G+++ Sbjct: 216 NTQEVSLNVEGGTLKVSFEKTTNGYKNIWLQGPATLVFKGEIE 258 >gi|228910772|ref|ZP_04074581.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200] gi|228848723|gb|EEM93568.1| Diaminopimelate epimerase [Bacillus thuringiensis IBL 200] Length = 268 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEETIFTIETLAGIVTAEVTVKDGVVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L Sbjct: 179 NVEFIEILNDDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263 >gi|194333117|ref|YP_002014977.1| diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271] gi|194310935|gb|ACF45330.1| Diaminopimelate epimerase [Prosthecochloris aestuarii DSM 271] Length = 264 Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 80/285 (28%), Positives = 123/285 (43%), Gaps = 29/285 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M +S + F+KM G GN +V D ++++D I +L D ++LI A Sbjct: 1 MNTS-IKFSKMSGAGNDFIVFDNMHKDIHLSADNIRSLCTRRTGIGADGLILIEPS--AR 57 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D ++ N DG CGNG RC V F + + T G Sbjct: 58 FDFAMKYYNADGLPGSMCGNGGRCAVYFAWTIGACGTTTAFEANGNR------------- 104 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + D + I L RD F + V+ G+PH I F + +L +D Sbjct: 105 YDAWVCDNEAIRLKMILPHDFRDEFGSNG------LSCNFVNTGSPHTIIFTD-ELDTFD 157 Query: 180 LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237 + S G L+ +F EG N++ +VTS ESL +RT+ERGV T ACG+ A A+ + S Sbjct: 158 VESTGRLIRNDSKLFPEGTNVNFLQVTSPESLKVRTYERGVEAETLACGTGAVAAALMSY 217 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 L K G L I++ ++ V+++G A + G + Sbjct: 218 KLGKIASRSVSVSVRSGDILTIDFSEDMQDVYLSGPATIVYTGSI 262 >gi|94987337|ref|YP_595270.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00] gi|94731586|emb|CAJ54949.1| diaminopimelate epimerase [Lawsonia intracellularis PHE/MN1-00] Length = 281 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 104/284 (36%), Gaps = 20/284 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F K+ G GN + ID R ++S A D I A D Sbjct: 10 IEFFKLHGCGNDFVFIDNRSLFIPKEKMSSWAEVICRRKRGVGADGIAFFELSTIAGADY 69 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGN RC+ + L++ G D Sbjct: 70 MWHFFNSDGSRAEMCGNASRCMGVLAVKIGLANMQHTLSTDAGLIS--ITVGDELQDATV 127 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + D I L S + + V+ G PH + F ++ + + + Sbjct: 128 TMTDPTNILLNVSLEV------------EKETQQVHFVNTGVPHLVVFHDNLIDYDIIPK 175 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 L EGVN++ ++ S S+ +RT+ERGV T ACG+ CASV+ + L Sbjct: 176 GKLLRGHSHFSPEGVNVNFVKIESPNSMFVRTYERGVEDETLACGTGVCASVIIANQLGL 235 Query: 242 TNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDIKTG 284 V V + IE + +N V M G + G+L + Sbjct: 236 VGTNVKVMTASKEI-IELNLNNGKVLMKGPVVHVYTGQLQLSEL 278 >gi|193214645|ref|YP_001995844.1| diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110] gi|193088122|gb|ACF13397.1| Diaminopimelate epimerase [Chloroherpeton thalassium ATCC 35110] Length = 271 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 31/287 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 M+ +++ F KM G GN +VID R + + I L T D ++++ + Sbjct: 1 MKRNIL-FTKMSGAGNDFIVIDNRDGAYSFLGEAEIRQLCTRRIGIGADGLLMLEGSE-- 57 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSI 116 + D +R N DG CGNG RC+ +F +K FE A DG I Sbjct: 58 NHDFAMRYYNADGRLGSMCGNGGRCIAQFGWKLGDAAKKELKFEANGNTYFASVLADGEI 117 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++M P + V G+PHAI +VE+ Sbjct: 118 KLNMLVPKDFRDAFSVDG--------------------HECVFVDTGSPHAILYVENLDE 157 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 + + + F G N++ ++ S E + +RT+ERGV T ACG+ A AS + Sbjct: 158 THVVEIGQKIRHNQEHFPGGTNVNFVQILSSEKIRVRTFERGVEDETLACGTGAVASALM 217 Query: 236 SGCLHKTNRA-VSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKL 279 S L K + V V + G L I + + HV ++G A + ++G++ Sbjct: 218 SYRLGKVSAKSVCVAVQSGDLLTIAFDEEMQHVTLSGPALEVFQGEV 264 >gi|86132208|ref|ZP_01050803.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134] gi|85817127|gb|EAQ38310.1| Diaminopimelate epimerase [Dokdonia donghaensis MED134] Length = 259 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 97/284 (34%), Gaps = 39/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+K +G GN ++ID R T D +ML+ S D Sbjct: 3 ISFSKYQGTGNDFVIIDNRLDIFPKDDTKLVAQLCDRKFGIGADGLMLLE--SHPSADFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + TFE + G+ A Sbjct: 61 MVYYNADGNESSMCGNGGRCLVAFAKALSLIDTHATFEAVDGMHEATVKDGIVHLKM--- 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + G+PH I V D+ + Sbjct: 118 -----------------------QDVAEIKTTPEYSFLDTGSPHHIKMVS-DVKTVAVKE 153 Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + G N++ + +RT+ERGV T +CG+ A +A+ Sbjct: 154 EGAAIRYGALYGEAGSNINFVQELEDGHFAVRTYERGVEDETLSCGTGVTAVAIAAHNNG 213 Query: 241 KTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 T+ + + + GG L + + V++ G A ++G+ Sbjct: 214 VTSKNNIQLDVEGGKLAVSFTKTATGYTDVYLIGPATFVFKGEW 257 >gi|228955200|ref|ZP_04117208.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072425|ref|ZP_04205627.1| Diaminopimelate epimerase [Bacillus cereus F65185] gi|229082182|ref|ZP_04214646.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2] gi|228701100|gb|EEL53622.1| Diaminopimelate epimerase [Bacillus cereus Rock4-2] gi|228710401|gb|EEL62374.1| Diaminopimelate epimerase [Bacillus cereus F65185] gi|228804333|gb|EEM50944.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 268 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 85/265 (32%), Positives = 135/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGVVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEKAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L Sbjct: 179 NVEFIEILNNDEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263 >gi|237736702|ref|ZP_04567183.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817] gi|229420564|gb|EEO35611.1| diaminopimelate epimerase [Fusobacterium mortiferum ATCC 9817] Length = 278 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 122/283 (43%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K++ GN ++++ +++S A D +M + + A D + Sbjct: 1 MRFSKLQAAGNDFILVNGLEYRDLDLSSTAKKVCDRHFGIGADGLMTCEESKVA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL----VAKENRDGSISV 118 N DGS + CGNG+RC +F+ ++KSF+ ET GI + ISV Sbjct: 59 NYYNSDGSRGEMCGNGIRCFSKFVYDNGVVRKKSFSVETDAGIKYIDLTLESEEVKYISV 118 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG +P + + + V MG PH + V+ D +Y Sbjct: 119 DMGRADFRATSVPCTLDSEIILEKEIEVEGQKLKISS----VLMGVPHTVILVD-DYDNY 173 Query: 179 DLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 D+ G + +F N++ +V E++ ++TWERG T CG+ C+S V + Sbjct: 174 DIDRLGKAIEYSMDIFPRKTNVNFIQVVDDENIIIKTWERGASRTLGCGTGCCSSAVIAH 233 Query: 238 CLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K +V + GG + + + + +V M G A+ G+ Sbjct: 234 KLGKIKGNSVKLTTEGGEVFVTFDNEYNVIMKGSAETICTGEF 276 >gi|84496885|ref|ZP_00995739.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649] gi|84383653|gb|EAP99534.1| putative diaminopimelate epimerase [Janibacter sp. HTCC2649] Length = 300 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 108/297 (36%), Gaps = 17/297 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD- 61 + + F K G N +++ N+ +D + L+ D ++ + A+ D Sbjct: 5 TTLRFTKGHGTENDFVLLPDVDARLNLEADVVRRLADRQAGIGGDGVIRVVPTASATEDA 64 Query: 62 ---------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKE 110 F+ N DGS + CGNG R +L + FE T GI + Sbjct: 65 VRAQAGRAPWFMDYRNADGSFAEMCGNGTRVFAAYLRREGLETADEFEIATRGGIKGIRF 124 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G + P D D + V MGNPH + Sbjct: 125 EGSGDHATIATNMGAWRFTDPAKAETDGFDSLVLLRERPLAEDPWSALSVDMGNPHTVVA 184 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + + L ++ P+ S G N+ RV + +R ERGVG T +CG+ C Sbjct: 185 LPESVDLATLD-LFHVPEVRPVPSNGTNVEFVRVVGAGHIAMRVHERGVGETRSCGTGVC 243 Query: 231 ASVVASGCLHKTNRA---VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 A+ +A+ +V + GG L + N+ V + G A +G +D+ Sbjct: 244 AAALATSFWAGQAEPTQDWTVDVPGGRLRVRGLPNHEVELAGPAALVADGTVDLSAL 300 >gi|189219936|ref|YP_001940576.1| diaminopimelate epimerase [Methylacidiphilum infernorum V4] gi|189186794|gb|ACD83979.1| Diaminopimelate epimerase [Methylacidiphilum infernorum V4] Length = 273 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 24/283 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F KM G GN +++D R + S I+ L D ++++ + D + + Sbjct: 5 FTKMHGAGNDFILLDNRRKLIQLDSSRISTLCDRHKGIGADGLLVVEN--DEGKEPRMVY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS CGNG RC RFL + E + + Sbjct: 63 FNADGSRASFCGNGARCFARFLFEMENKDGEQGEVCFMTEAGRITGW---------ISGE 113 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYDLASFGN 185 I L + R I ++ + + G PH + F + +L L G+ Sbjct: 114 AVKITLPTPKNLTLRIPLEIEGKSYELHK----IDTGVPHVVLFEDCENLPRSTLEEIGS 169 Query: 186 LLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243 + H EG N++ A + +RT+ERGV T ACGS AS + S + + Sbjct: 170 RIRWHKAFQPEGTNVNFAWRVGERKIKVRTYERGVEGETLACGSGVTASALISHLVLDMD 229 Query: 244 RAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + V + G L + + + F+ G AKK + G ++I Sbjct: 230 CPIEVSVRSGETLKVYFVKSGPAFREAFLEGPAKKVFVGTIEI 272 >gi|313673767|ref|YP_004051878.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM 19672] gi|312940523|gb|ADR19715.1| diaminopimelate epimerase [Calditerrivibrio nitroreducens DSM 19672] Length = 272 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 78/290 (26%), Positives = 127/290 (43%), Gaps = 30/290 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDD-NTHFDQIMLIHDFQDASVDA 62 V F KM G GN ++ID R + T + + + + D ++LI VD Sbjct: 4 VSFWKMSGSGNDFIIIDNRTLFIDKTDFRNTVAKICKRSMSVGADGVILIEPSNK--VDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGNG RC RF K FE++ GI+ A+ S+ V + Sbjct: 62 KWDFYNSDGSTAEMCGNGSRCAARFCYENGIAGKQMKFESLAGIIEAEITGCSSVKVKLT 121 Query: 122 EPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P IPL N V+ G PH I DD+Y++D Sbjct: 122 RPSDLKLNIDIPLT------------------DLTLNGSFVNTGVPH-IAIEVDDIYNFD 162 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + +G + H +F +G N++ ++ +++ +RT+ERGV T ACG+ + A Sbjct: 163 VKKYGREIRFHKLFSPKGTNVNFYKILPDKTVKIRTYERGVEDETLACGTGSAAVAFILH 222 Query: 238 CLHKTNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 V + GG L+I +++V++ GEA+ ++G L ++ K+ Sbjct: 223 KKSILKSPVELITTGGMKLIIHIDVDDNVYLEGEARLVYKGTLTEESYKY 272 >gi|182435520|ref|YP_001823239.1| diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464036|dbj|BAG18556.1| putative diaminopimelate epimerase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 288 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M +S + F K G N +++ + + + L D ++ + Sbjct: 1 MSTSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK 109 + + F+ N DGS + CGNG+R +L + T T G Sbjct: 61 EARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G I+V MG +L + + ++ V+MGNPHA+ Sbjct: 121 LAKNGDITVSMGRALLPGESVTVSVGDR----------------SWPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H ++ ++ +GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVD-DLDHAGDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A + V + GG L+I H + + MTG A EG +D Sbjct: 224 CAVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID-- 281 Query: 283 TGKWIKKN 290 W++ + Sbjct: 282 -RAWLETS 288 >gi|317061200|ref|ZP_07925685.1| diaminopimelate epimerase [Fusobacterium sp. D12] gi|313686876|gb|EFS23711.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 278 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 17/285 (5%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 ++S + F KME GN ++ D R I A D I+ A Sbjct: 7 LRSKKMKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA- 65 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSIS 117 D + N DGS + CGNG+RC+ R++ + + + T ET G+ D Sbjct: 66 -DMKMNYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDE--- 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + + +++ + V++G PH VED + Sbjct: 122 ------KNQVSSVQVKMGKAEWEKEFQEERVEIEGREFVFYRVTVGVPHIAILVEDFMKD 175 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L +G+ L KHP+F + N++ ++ + + + ++TWERG G T C + + V Sbjct: 176 EELNYWGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVILQ 235 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMT-GEAKKEWEGKLDI 281 L K + GG + +E D+ V M G+A + G +D+ Sbjct: 236 HLQKISGEAHFYTEGGDVFVEVKDD--VVMIYGKANFVFAGDIDV 278 >gi|297156730|gb|ADI06442.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1] Length = 304 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 105/301 (34%), Gaps = 21/301 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + F K G N +++ ++ A+ + D ++ + Sbjct: 7 LAFLKGHGTENDFVIVPDPDGRLELSPAAVARICDRRAGVGGDGLIRVVRSSAHPEARGM 66 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG+R R+L ++ V + + Sbjct: 67 ADDAEWFMDYRNSDGSVAEMCGNGVRVFARYLERAGLVEAGDLAVATRAGVRRIHIAKDD 126 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 P + + ++ + V MGNPHA+ FV+ DL Sbjct: 127 LGGTDAPGGAVT-VQMGKATLPEPGADGPVTVAVGEHSWPARHVDMGNPHAVAFVD-DLD 184 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + + G N+ + +R ERG G T +CG+ ACA +VA+ Sbjct: 185 QAGRLFDAPAVTPGSAYPHGTNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACAVMVAT 244 Query: 237 GCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + A +V + GG L+I + V MTG A EG+LD W+ Sbjct: 245 ARRDGADPAADGHPVTYTVDVPGGRLVISELPDGTVEMTGPAVIVAEGELDP---AWLDT 301 Query: 290 N 290 Sbjct: 302 A 302 >gi|108802950|ref|YP_642887.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941] gi|108764193|gb|ABG03075.1| diaminopimelate epimerase [Rubrobacter xylanophilus DSM 9941] Length = 262 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 109/280 (38%), Gaps = 25/280 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH-DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M F KM G GN L+ D ++ A A D I++ AS D Sbjct: 1 MTAFTKMHGAGNDFLLFDWEEVEGADLAELARRACDRHFGVGADGILV--PAPSASADLR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGS + CGNG+RC+ R+ R G V K Sbjct: 59 MVYRNADGSPSEMCGNGIRCLARYARDRGIVSGDVLAVETGAGVRKVALLE--------- 109 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYHYDLA 181 +++ G L VSMGNPHA+ F+ + + DL Sbjct: 110 ---------GGRASRVEMGSPAFGAPVALLGHRFVRVSMGNPHAVAFLPAEEAVERLDLR 160 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 S G + + P F N+ V L +R WERG G T A GS +CA+ A+ Sbjct: 161 SVGPRVERDPAFPGRTNVEFVCVRGPHELRMRIWERGAGETLASGSGSCAAAAAAIREGL 220 Query: 242 TNRAVSVKMLGGGLLIEW--HDNNHVFMTGEAKKEWEGKL 279 V V + GG + +EW + + ++M G A+ EG+L Sbjct: 221 ARGPVRVILDGGEVEVEWSGREGDPLYMRGPAEYVCEGRL 260 >gi|110667472|ref|YP_657283.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi DSM 16790] gi|109625219|emb|CAJ51639.1| diaminopimelate epimerase (DAP epimerase) [Haloquadratum walsbyi DSM 16790] Length = 330 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 21/294 (7%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--------HFDQIMLIH 53 +S++V K G GN +++D N + A S D D ++ + Sbjct: 4 ESALVTAVKYHGTGNDFIIVDDTKEIPNRRAFAKVHCSRDTGVCHETTDRRGADGVLFLT 63 Query: 54 -DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + Q + + +I DGS CGNG R + + ET G A Sbjct: 64 INQQHTPIQVVMTLIQPDGSTAAMCGNGARVAAAWAAEQTGATEMMIETPAGTRHATL-S 122 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 +I+++MG P+ + +PL D D + + V+ G PHA+ V+ Sbjct: 123 GDTITIEMGTPVFTPRCVPLTTDRDTALID-------EQIGSLSITAVNTGVPHAVGMVD 175 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACA 231 D+ L + F GVN+++A +T RT+ERGV T +CG+ A A Sbjct: 176 -DIDSISLNDIAPPIRHADTFPAGVNVTLAELTGATQFRQRTYERGVEDETRSCGTGAVA 234 Query: 232 SVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + + T+ ++V+ GG L + + +TG ++E++ +L + T Sbjct: 235 IAAVACRIGIIDTDTPITVRPPGGALRVTVASDQSTTLTGSVEREFQTELTVIT 288 >gi|91215627|ref|ZP_01252597.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755] gi|91186093|gb|EAS72466.1| diaminopimelate epimerase [Psychroflexus torquis ATCC 700755] Length = 263 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 39/289 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K +G GN ++ID R + I L D ++L+ + D+ D + Sbjct: 3 LHFFKYQGTGNDFVLIDNRIPIFKNDAKFIQGLCDRRFGVGADGLILLENPSDSISDFKM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEP 123 N DG E CGNG RC+V F TFE + G+ A + + P Sbjct: 63 IYFNADGKESSMCGNGGRCIVAFAKQLGIIDSETTFEAVDGLHSAIIKGETVSLKMIDVP 122 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ R ++ G+PH + FV+ D+ +D+ + Sbjct: 123 TVNLS--------------------------REASFMNTGSPHHVAFVD-DVKDFDVFAQ 155 Query: 184 GNLLAKHPMFSE--GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + P + G N++ +V + +RT+ERGV T +CG+ A+ + S + Sbjct: 156 GRRIRNLPNYEAIGGTNVNFIQVID-GDVHVRTYERGVEDETYSCGTGVTAAAITSKMAN 214 Query: 241 KTNR-AVSVKMLGGGLLIEWHDNN-----HVFMTGEAKKEWEGKLDIKT 283 K V V GG L +++ ++++ G A +EG + KT Sbjct: 215 KVEDLPVKVLTKGGSLEVDFEIEGLNAAKNIWLKGPATFVFEGNYNDKT 263 >gi|257126122|ref|YP_003164236.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b] gi|257050061|gb|ACV39245.1| diaminopimelate epimerase [Leptotrichia buccalis C-1013-b] Length = 283 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 10/280 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN +++ + + + A D ++++ Sbjct: 1 MLKFEKYQGAGNDFVIVAEKDLIEKGIPEYGEFASQVCDRHFGIGADGLIILKYVASMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 F+ N DGS+ CGNG+RC + ++ F +T+ G L K N D Sbjct: 60 --FMFFFNADGSQAPMCGNGIRCFSNYLVNNHLVEGNEFVVKTVPGDLTIKVNYDEEKDD 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + + + + + MG H++ FV D + Sbjct: 118 FSARVNMGKPVFNVKELINTEKEQFLREKINIDGKEIEISYIFMGTDHSVIFVNDFNDYN 177 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +F + VN++ +V + E +++ TWERG G T ACG+ A AS V + Sbjct: 178 IDEFGKKIENYINLFPKKVNVNFVKVYNREHMEVITWERGAGRTLACGTGATASAVLAKT 237 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEG 277 + V+VK+ GG L+IE+ + FMTG ++K EG Sbjct: 238 FGFVDTKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 277 >gi|84490356|ref|YP_448588.1| hypothetical protein Msp_1579 [Methanosphaera stadtmanae DSM 3091] gi|84373675|gb|ABC57945.1| DapF [Methanosphaera stadtmanae DSM 3091] Length = 292 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 18/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNTHFDQIMLIHDFQDASV 60 ++F KM +GN +VI+ I +A N LS + D ++ + Sbjct: 5 IEFTKMHALGNDYIVINETETEV-IPEEAKNKLSNDICTRRFSVGSDGVIFACKSDKS-- 61 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV------AKENRDG 114 D RI N DGSE + CGNG+RC+ +++ K T + + +++ Sbjct: 62 DVRFRIFNSDGSEAEMCGNGIRCLAKYVYDNDIVKKQTMQIETMEDIKEARLTVEDDVVK 121 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 SI++DMG+ + IP D V+ + VS+GNPHA+ F + + Sbjct: 122 SIAIDMGKGFFKPEEIPAIAPSGNTDEFIDEEIDVDGEKIIMSS-VSVGNPHAVSFTDIN 180 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL +G + H F E VN+ + S +++ TWERG G T ACG+ + V+ Sbjct: 181 IDDIDLDYYGPRIENHKAFPEKVNVHFVNIVSPGEINILTWERGAGFTFACGTGTTSCVL 240 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 + N V + GG L I D+N M G+A ++ ++ + Sbjct: 241 LGYKMGLLNEKVHAHLSGGDLDITVSDHNEYLTATMEGKAVTVYKAQMTVD 291 >gi|330752443|emb|CBL87393.1| diaminopimelate epimerase [uncultured Flavobacteria bacterium] Length = 261 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 100/281 (35%), Gaps = 37/281 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K + GN ++ID R N T D ++L+ D Sbjct: 3 INFYKYQATGNDFVIIDNRLKTFTKNNTKLIARLCDRRFGIGADGLILLELAD--GFDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC+V + T F + G+ A Sbjct: 61 MIYYNADGKESSMCGNGGRCIVALAQRLGMIQGSTNFIAVDGLHKATIQGS--------- 111 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L FVV G+PH + + Sbjct: 112 -----------------QVSLKMRDVFKTAKLGGGFVVDTGSPHCVLMRSNLSAVDVQFE 154 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 L EG+N++ + S E +RT+ERGV T +CG+ A +A L K Sbjct: 155 GSQLRNSPAFKKEGINVNFVQALSTEHFAVRTYERGVEDETLSCGTGVTAVAIAMHALKK 214 Query: 242 TNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEG 277 TN+ + ++ GG L + + N +V+++G A +EG Sbjct: 215 TNKERIDLQTNGGDLEVRFKAENSTYVNVWLSGSAHCVFEG 255 >gi|328954156|ref|YP_004371490.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109] gi|328454480|gb|AEB10309.1| Diaminopimelate epimerase [Desulfobacca acetoxidans DSM 11109] Length = 273 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 115/287 (40%), Gaps = 35/287 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM+G GN ++ID R + A + D ++ + A+VD Sbjct: 4 IPFWKMQGSGNDFVLIDHRRSFISDGERAGFARKVCAPKFGVGADGLIFLESS--ATVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 R N DGSE + CGNG RC RF + FET+ G++ A+ + +++ Sbjct: 62 RWRFFNADGSEAEMCGNGGRCAARFAYLHGIAGEKMAFETLAGVIHAEVLDR-RVKLELS 120 Query: 122 EPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P IPL+ ++ G PH + + DL Sbjct: 121 PPHGLRLGLEIPLSAK------------------TWTGHFINTGVPHVVLPL-ADLEAAP 161 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237 + G + H +F G N++ R + L +RT+ERGV T ACG+ + A+ + + Sbjct: 162 VTEVGRAIRFHSLFEPAGTNVNFIRRSGFRELQVRTYERGVEAETLACGTGSVAAALIAS 221 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKL 279 L V V G L I + VF+ G A ++G+L Sbjct: 222 RLWGMASPVVVHPASGETLKIYFDAAGDIFRSVFLEGGAAVVFQGEL 268 >gi|110636553|ref|YP_676760.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406] gi|110279234|gb|ABG57420.1| diaminopimelate epimerase [Cytophaga hutchinsonii ATCC 33406] Length = 261 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 108/286 (37%), Gaps = 37/286 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + I D +L+ + D Sbjct: 3 IPFYKYQGTGNDFIIIDNRSNIFDRERRDIVAQLCDRRFGIGADGFILLQN--KEGYDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V+F T F + G+ A Sbjct: 61 MVYYNADGNESTMCGNGGRCIVQFAQDIGVMNLTTHFLAVDGVHYAFIK----------- 109 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +K+ + + F ++ G+PH + VE + Sbjct: 110 --------------EKLVNLQMMNVAGIDTLADDTFFLNTGSPHYVKKVEKIEQFPVFET 155 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 ++ G N++ + L +RT+ERGV T +CG+ A+ +A+ L Sbjct: 156 GKSIRYSDTFAPGGTNVNFMEMQD-NWLFVRTYERGVENETYSCGTGVTAAAIAAEKLGI 214 Query: 242 TNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKLDIK 282 + V +K LGG L + + VF+ G AK+ + G++++ Sbjct: 215 APQYVLIKTLGGELEVTFIKKSDGSYKDVFLIGPAKRVFTGEIEVD 260 >gi|225164023|ref|ZP_03726309.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2] gi|224801366|gb|EEG19676.1| Diaminopimelate epimerase [Opitutaceae bacterium TAV2] Length = 298 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 19/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + F K +GN +V++ ++ I + D +L D Sbjct: 1 MRFYKYHALGNDYIVLNPADFPAWGAAPSTAQIRVVCHRNFGVGSDG-ILWGPLPSEKSD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--------TFETIRGILVAKENRD 113 +RI N DGSE + GNG+R R+L + + T ET G + ++ Sbjct: 60 CGLRIFNPDGSEAEKSGNGLRIFTRYLWDTGRVRKNSADGTGVVTIETPGGHVRSEIRDA 119 Query: 114 GS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFL----RNPFVVSMGNPHAI 168 G I V+MG + IP+ + + + + ++GNPH + Sbjct: 120 GRLIQVEMGRVSFNSAQIPVTLAGEGGGGGEGRDVINEKITILDREFTFCAATIGNPHCV 179 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + ++ +G L HP F N+ ++ ++ + WERG G T A GS+ Sbjct: 180 LPL-PEVSAELAHKYGPHLETHPNFPRKTNVQFLQILDRANIRIEIWERGAGYTLASGSS 238 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + A+ + L + +V+V M GG + IE D+ + MTG K EG + Sbjct: 239 SSAAAAVARKLGLVDSSVTVHMPGGRIGIEIGDDYAIQMTGSVNKVAEGTM 289 >gi|300778706|ref|ZP_07088564.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910] gi|300504216|gb|EFK35356.1| diaminopimelate epimerase [Chryseobacterium gleum ATCC 35910] Length = 255 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 112/283 (39%), Gaps = 36/283 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 ++F K +G GN +++D R I L D ++L+ + D + D + Sbjct: 1 MEFYKYQGTGNDFVMVDNRDLQFTKDKGIIEKLCDRRFGIGADGLILLEN--DPNYDFKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DG E CGNG RC+V F + F G A+ +G I + M Sbjct: 59 VYYNSDGGESTMCGNGGRCLVAFAFFLDIFEDKCRFIATDGEHEAEI-HNGIIKLKMINV 117 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 N FV++ G+PH + +VE+ + Sbjct: 118 DAVSHD-------------------------GNDFVLNTGSPHYVKYVENLKDYPVYDEG 152 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 + +G+N++ S + +RT+ERGV T +CG+ AS + H Sbjct: 153 YGIRNSETYKEKGINVNFVEKISDNEIFVRTYERGVEDETYSCGTGVTASALTFLQKHNL 212 Query: 243 NRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 +V VK LGG L + + ++++ G AK+ + GK D+ Sbjct: 213 -TSVKVKTLGGNLKVYAEKSGDSFRNIWLEGPAKQVFRGKTDL 254 >gi|284044709|ref|YP_003395049.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684] gi|283948930|gb|ADB51674.1| diaminopimelate epimerase [Conexibacter woesei DSM 14684] Length = 289 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 17/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K + +GN +++ R +T I A + D I+L+ + A + Sbjct: 1 MKFEKWQALGNDYAIVEQRDLPFELTPARIRAFCAGHFGVFADGILLLSESDQPGFVADL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMGE 122 +I N DGSE + GNG R + +L R F+ +T G + + VDMG Sbjct: 61 KIYNPDGSEAELSGNGAREAIMYLRQRGWTDADEFSIQTAAGEIRPTITGPATCKVDMGR 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDL 180 L K P + + VS+GNP V+ + L DL Sbjct: 121 AKLTSKDFPSGPDDGRAQLTAGQHQ-------WSFQHVSIGNPQCSIRVDSLEALDALDL 173 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G + H F N+S + + + R +ERGVG T + G+ A + VA Sbjct: 174 PAIGGAIEHHERFPNRTNVSWYAELAPDRIRARIFERGVGETLSSGTGATGAAVAHVLRG 233 Query: 241 KTN-----RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V + GG L +E ++ HV +TG A + G L Sbjct: 234 GGGDDPDTSTVTVVLDGGELEVEVAEDLHVNLTGWAVPVFGGTL 277 >gi|228975036|ref|ZP_04135595.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784557|gb|EEM32577.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 268 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGSI----SVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEETVFTIETLAGIVTAEVTVEDGFVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FVE D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVE-DVEKAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + E ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L Sbjct: 179 NVEFIEILNDEEMNFRVWERGSGVTQACGTGACAAVVAAILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263 >gi|85859968|ref|YP_462170.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] gi|85723059|gb|ABC78002.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] Length = 295 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 10/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + + K +GN LVI ++ ++ + + D +L+ + S D + Sbjct: 17 IKYDKYHALGNDYLVIRPINDLGDLDAELVQLICNRHCGVGSDG-ILVGPLESESSDFRL 75 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI N DGSE + GNG+R RFL + FT ET+ G +V + +G ++V+MG Sbjct: 76 RIFNPDGSEAEKSGNGLRIFSRFLYDQGLVHEDPFTVETLGGNVVCQVQNEGRTVTVEMG 135 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + IP A ++ R+ I ++GNPH + E Sbjct: 136 KVSFLSTKIPAAGEEREVLREHMDISG----ATFEYCAATVGNPHCVILCEKS-TPELAR 190 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 +G L+ P F N+ + ++ + WERG G T A GS++ A+ + L Sbjct: 191 CYGPLIETAPRFPYRTNVQFLEILDRNNIRIEIWERGAGYTLASGSSSTAAAAVAYKLGF 250 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 N ++V M GG L I + + MTG + EG +D + Sbjct: 251 CNEVITVHMPGGSLTIRFSHDFVATMTGPVTRICEGAMDPE 291 >gi|189502193|ref|YP_001957910.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus 5a2] gi|189497634|gb|ACE06181.1| hypothetical protein Aasi_0805 [Candidatus Amoebophilus asiaticus 5a2] Length = 258 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 102/286 (35%), Gaps = 40/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + F K G GN +++D + + I +L D + + S D Sbjct: 3 IPFYKYHGTGNDFILVDNITNPNVTCPHDPELIKSLCHRKFGIGADGFIFLEKS--GSYD 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N D S+ CGNG RC V + F I G A+ + Sbjct: 61 FEMIYYNSDASQS-LCGNGSRCAVHLASYLGIINNVADFLAIDGPHQARIQDN------- 112 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + N + ++ G+PH + V++ + + Sbjct: 113 -------------------LVYLQLHDVSTIQMMGNDYFLNTGSPHYVRLVQNLVETDVI 153 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG-VGLTAACGSAACASVVASGCL 239 ++ A + G N++ ++ + + + T+ERG T +CG+ A+ + + Sbjct: 154 ELGKSINASQSFQNTGTNVNFVQLEANNQISVCTYERGVNDETLSCGTGVVAAALVASQK 213 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVF----MTGEAKKEWEGKLDI 281 T V V GG L I + +N F + G A + ++GK+ I Sbjct: 214 GYT-SPVYVVTKGGELQISFCKHNTAFSNICLVGPATQVFQGKITI 258 >gi|67459037|ref|YP_246661.1| diaminopimelate epimerase [Rickettsia felis URRWXCal2] gi|75536527|sp|Q4ULS7|DAPF_RICFE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|67004570|gb|AAY61496.1| Diaminopimelate epimerase [Rickettsia felis URRWXCal2] Length = 270 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN +V++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQFIIYEEHDDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +K T L+ + +ISV++G+ Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVEDENNISVNVGKV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + + L+ V +GNPH + F + L D Sbjct: 122 SFNEVWMP-------SRDKIWELAERYMIDLKETICVDIGNPHLVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L + Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V G L ++ +N ++ M G A G+ Sbjct: 232 SPSTVVFKYGSLTMK-EENGNIIMQGAATLVARGE 265 >gi|163755441|ref|ZP_02162561.1| diaminopimelate epimerase [Kordia algicida OT-1] gi|161324861|gb|EDP96190.1| diaminopimelate epimerase [Kordia algicida OT-1] Length = 269 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 39/289 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTD-DNTHFDQIMLIHDFQDA 58 ++ ++ F K +G GN +++D R + I L D ++L+ + D Sbjct: 8 IEEMILSFYKYQGTGNDFVLVDNRHDIFPKNNTKLIRKLCDRKFGIGADGLILLEN--DE 65 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + D + N DG+E CGNG RC+V F + ++ TF I G A Sbjct: 66 TYDFKMIYYNADGNESTMCGNGGRCMVAFANFLGVIQQETTFIAIDGTHYA--------- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 S + + + G+PH + F ++++ Sbjct: 117 -----------------SIEADVVNLQMQDVTTIENHDEHVFLDTGSPHHVTF-KEEISQ 158 Query: 178 YDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 +D+ G + P F EG N++ + S +RT+ERGV T +CG+ A +A Sbjct: 159 FDIKKEGAAIRYGAPYFEEGTNVNFVKKLSETEFRVRTYERGVEDETLSCGTGVTAVALA 218 Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 L +T+ V++++ GG L + + ++F+ G+A + ++G++ Sbjct: 219 MHHLQETSANTVTLQVEGGSLEVSFEKEATSYKNIFLKGKATQVFKGEI 267 >gi|311898742|dbj|BAJ31150.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 295 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 105/288 (36%), Gaps = 24/288 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------A 58 F K G N +++ ++++ + AL D ++ + Sbjct: 15 FLKGHGTQNDFVIVPDPDGRIDLSAADVAALCDRRAGIGADGVLRVVRSAAEPAAAGMAG 74 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + F+ N DGS + CGNG+R R+L S VA + + Sbjct: 75 QAEWFMDYRNADGSIAEMCGNGVRVFARYLVHAGHAGSGELA------VATRGGVKRVRI 128 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P + + V+ V+MGNPHA+ FVE DL H Sbjct: 129 AADAPDGTPGDVTVDMGRAAFPGPDGVTVTVDGR-SWPALNVNMGNPHAVAFVE-DLAHA 186 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 A + +GVN+ + +R ERG G T +CG+ ACA VA+ Sbjct: 187 GHLYEAPATAPAGAYPQGVNVEFVVDRGERHVAMRVHERGSGETRSCGTGACAVAVAAIR 246 Query: 239 LHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + A +V + GG L+IE + + MTG A EG L Sbjct: 247 RDGADPAATGEAVRYTVDVPGGRLVIEEFPDGRIEMTGPAVIVAEGVL 294 >gi|294055129|ref|YP_003548787.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221] gi|293614462|gb|ADE54617.1| diaminopimelate epimerase [Coraliomargarita akajimensis DSM 45221] Length = 285 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 8/285 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +GN LV+D + + T D I + D +L D + Sbjct: 1 MKFSKYHALGNDYLVLDPKDAPELPGTDDTIRICHRNFGLGSDG-ILYGPIPTERADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKE-NRDGSISVDMG 121 RIIN DGSE + GNG+R R+L + FT +T+ GI+ + SI VDMG Sbjct: 60 RIINPDGSEAEKSGNGLRIFARYLFDEGKVGTEPFTVDTLGGIVTCEISEGAVSIKVDMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ + ++ +GNPH + + ++ Sbjct: 120 QVRFGHEHIPVDGPEQS--DQNLGHELEINGTNYTTYIADIGNPHCVVPL-PEISEELAC 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G ++ HP F N+ + ++ + WERG G T A GS++ A+ + + Sbjct: 177 KDGAVIEVHPDFPNRTNVQFLKALDRNNIQIEIWERGAGYTLASGSSSSAAAAVAHRIGL 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + ++V M GG + IE D+ + MTG A + D + + Sbjct: 237 CDETITVHMPGGKIGIEIGDDYAIRMTGPATRVAIMHFDPEALDF 281 >gi|163788613|ref|ZP_02183058.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1] gi|159875850|gb|EDP69909.1| diaminopimelate epimerase [Flavobacteriales bacterium ALC-1] Length = 257 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 37/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R + T D +L+ + D +VD Sbjct: 1 MTFYKYQGTGNDFIIVDNRLQKIDKGDTKRIAELCDRRFGIGADGFILLEN--DENVDFK 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+ F + + F I G+ AK Sbjct: 59 MVYYNADGNESSMCGNGGRCITAFAKLLGVIKNEAEFIAIDGLHKAKIK--------NDI 110 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L + + + ++FD + G+PH + V A+ Sbjct: 111 VHLQMQDVSIVKAFDSH------------------LFLDTGSPHHVELVTGLKDFEVKAN 152 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + P G N++ S + +RT+ERGV T +CG+ A +A K Sbjct: 153 GSKIRYGEPYNKAGSNVNFVEQVSDTTFSVRTYERGVEDETLSCGTGVTAVALAMHKSGK 212 Query: 242 TNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 T V++ GG L I ++ + +++ G A K ++G+++ Sbjct: 213 TKSNIVNLNTPGGQLKITFNSDGDGYEDIWLIGPAIKAFKGEIE 256 >gi|116747508|ref|YP_844195.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB] gi|116696572|gb|ABK15760.1| diaminopimelate epimerase [Syntrophobacter fumaroxidans MPOB] Length = 287 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 120/291 (41%), Gaps = 37/291 (12%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITS--DAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 F KM G GN +V+D R + + + D ++LI + D VD Sbjct: 9 RFLKMTGSGNDFIVLDNRAQGISPEQGRELARLACRRKLSVGADGLILIEN--DPEVDFR 66 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMG 121 R N DGSE + CGNG RC RF + + +F T+ GI+ A+ + + M Sbjct: 67 WRFFNADGSEAEMCGNGARCAARFAHIKGIVAKSRMSFRTLAGIIEAEIKEP-RVKIRMT 125 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYHYD 179 P + + ++ G PH + F+E+D L + Sbjct: 126 PPHGLEPDLNVEAEQRSFRL----------------HFINTGVPHVVCFLENDRALEEMN 169 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + +G LL H F G N++ A V + +RT+ERGV T ACG+ + AS + + Sbjct: 170 VFHWGRLLRHHRRFQPAGSNVNFALVEDANHMAIRTYERGVEDETLACGTGSIASALVAA 229 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWH--------DNNHVFMTGEAKKEWEGKL 279 V V+ G L I + + + V++ G+AK +E +L Sbjct: 230 AKGMVQSPVEVRTRSGETLTIYFDNPSTGAAAEFSQVYLEGDAKVVYEAEL 280 >gi|330506677|ref|YP_004383105.1| diaminopimelate epimerase [Methanosaeta concilii GP-6] gi|328927485|gb|AEB67287.1| diaminopimelate epimerase [Methanosaeta concilii GP-6] Length = 299 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 25/282 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVDAF 63 FAK+ G GN +++D S A D ++ + Q + D Sbjct: 23 FAKLHGNGNDFILVDEISRELVAESAKSRFAIACCRRSFGIGADGVLFLASSQRS--DLG 80 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSISVD 119 +R+ DGSE + CGNG+RC+ ++ T I I V + + VD Sbjct: 81 MRLFQPDGSEAEMCGNGIRCLAKYAWESGYVGQSFDVETLAGIIPIQVRERDGSFWARVD 140 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P + IP S D MD V+ G PHA+ FV D D Sbjct: 141 MGVPRFNRPSIPACGSGDLMDEQMGEFRVC---------AVNTGVPHAVIFV--DDLDID 189 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGC 238 + + +F EG N+ ++ S L +RT+ERGV T +CG+ A AS + Sbjct: 190 IYEAAPPIRHCSVFPEGANVDFVKLGSS--LQIRTFERGVEGETFSCGTGAVASASVARR 247 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V V+ GG L+I + + + FM G A + ++D Sbjct: 248 MGLVGDEVLVETKGGPLIINF-EKDKAFMEGPAVTVYSAEMD 288 >gi|229199084|ref|ZP_04325767.1| Diaminopimelate epimerase [Bacillus cereus m1293] gi|228584355|gb|EEK42490.1| Diaminopimelate epimerase [Bacillus cereus m1293] Length = 268 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 16/270 (5%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 + + R +++ A + + D ++LI A V +R+ N DGSE +SCGN Sbjct: 1 MFEERIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGN 58 Query: 80 GMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLA 133 G+RCV ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ Sbjct: 59 GLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPML 118 Query: 134 RSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + R+ F + F VSMGNPHA+ FV+ D+ L + G +L H M Sbjct: 119 GEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEM 173 Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKM 250 F E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + Sbjct: 174 FPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHL 233 Query: 251 LGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 GG L+I W + +V M G A+ G + Sbjct: 234 AGGDLMIAWTEEGNVLMKGPAEVICHGVYE 263 >gi|91205467|ref|YP_537822.1| diaminopimelate epimerase [Rickettsia bellii RML369-C] gi|157827174|ref|YP_001496238.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389] gi|122425677|sp|Q1RIT1|DAPF_RICBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225749|sp|A8GWH4|DAPF_RICB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|91069011|gb|ABE04733.1| Diaminopimelate epimerase [Rickettsia bellii RML369-C] gi|157802478|gb|ABV79201.1| diaminopimelate epimerase [Rickettsia bellii OSU 85-389] Length = 269 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 16/277 (5%) Query: 3 SSMVDFAKMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 SS ++F KM G+GN ++I+ +++ A + DQ ++ + D+ Sbjct: 2 SSKINFVKMHGLGNDFVIINKKDLTGTYDLSQLAKSMAKRHLGIGCDQFIIYEEQNDS-- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + I N DGS + CGN RC+ + + +K T L+ + +ISV++ Sbjct: 60 -YEMIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVVVGNKKLLCHVIDENNISVNV 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + +P + + L+ V +GNPH + F + +L + Sbjct: 119 GGVSFNESWMP-------SRDKIWEFAERYMIDLKETICVDVGNPHLVIFSKLELQDQKI 171 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 172 --VGEKLQDKALFADGVNVNFAEVRD-NKIYLSVWERGSGLTLACGSGACGSFAAGLKLG 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 + V G L I +N ++ M G A +G Sbjct: 229 FIHSPCEVVFKHGSL-IMKEENGNIIMQGPASLVAKG 264 >gi|254386096|ref|ZP_05001410.1| diaminopimelate epimerase [Streptomyces sp. Mg1] gi|194344955|gb|EDX25921.1| diaminopimelate epimerase [Streptomyces sp. Mg1] Length = 291 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 110/309 (35%), Gaps = 38/309 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ + + A+ L D ++ + Sbjct: 1 MTQTSLSFLKGHGTENDFVIVPDPDNAIELPATAVAKLCDRRAGIGGDGVLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109 + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 61 EAKAMAGEAEWFMDYRNSDGSIAEMCGNGVRVFARYLQYAGHVEPGDLAIATRGGVKRVH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++ G ++V MG + ++ V+MGNPHA+ Sbjct: 121 LDKRGDVTVSMGRAEFPEGEVTVSVGDR----------------SWPARNVNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ L + + GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVD-SLDDAGTLYDAPPFSPASAYPAGVNVEFVADRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + +V + GG L+I + + + MTG A G+ D Sbjct: 224 CAVAVAAIRRDGVDPAETGEQVTYTVDLPGGTLVITEYPDGRIDMTGPAVIVGSGEFD-- 281 Query: 283 TGKWIKKNE 291 W+ + Sbjct: 282 -AAWLAETA 289 >gi|229032582|ref|ZP_04188547.1| Diaminopimelate epimerase [Bacillus cereus AH1271] gi|228728767|gb|EEL79778.1| Diaminopimelate epimerase [Bacillus cereus AH1271] Length = 268 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEETVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263 >gi|124485385|ref|YP_001030001.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z] gi|124362926|gb|ABN06734.1| diaminopimelate epimerase [Methanocorpusculum labreanum Z] Length = 274 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 117/283 (41%), Gaps = 32/283 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN ++ID A+ D ++ I + D Sbjct: 13 IAFTKLHGNGNDFILIDEMDQVIIPDDMKAQFAVVYCDRRFGIGGDGVLFI--SKSDKAD 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVD 119 +R+ D SE + CGNG+RC+ ++ + K+K+F+ ET+ G++ + D Sbjct: 71 IRMRLFQPDASEAEMCGNGIRCLSKYAFDKEYAKKKAFSVETLAGVMQVRVGYDSDGDFM 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +D + + V+ G PHA+ FV ++ Sbjct: 131 AT-----------------IDMGTAVYDESREIDGMTVYSVNTGVPHAVIFVG-NVDGIA 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGC 238 + + HP F +G N++ ++T + +RT+ERGV T +CG+ + AS + + Sbjct: 173 INEVAPKIRHHPSFPKGTNVNFVQITGSSEIVIRTFERGVEGETLSCGTGSTASALIAAK 232 Query: 239 LHKT-NRAVSVKMLGGGLLIEWHDNNHV-FMTGEAKKEWEGKL 279 KT V VK +GG L I + MTG A + G++ Sbjct: 233 TGKTHGSVVHVKTVGGPLDITV---GDIPQMTGPAATVFVGEI 272 >gi|189485645|ref|YP_001956586.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287604|dbj|BAG14125.1| diaminopimelate epimerase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 274 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 30/289 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F+K+ GN ++ID R ++ + A + D ++L+ A D Sbjct: 3 INFSKLTAAGNDFILIDNRENIIAQEDCQALAKKLCDRKYSIGADGLILLEKS--ACKDF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMG 121 ++ N DGS CGNG R + +F FET G++ A+ + + +D+ Sbjct: 61 KMKYFNSDGSYASMCGNGGRSIAKFAYDLCVANLKMVFETDAGVINAEILPEDRVRLDLY 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K I + + + D + ++ G PH + FV+ D+ + D+ Sbjct: 121 NPRDLKKDIKVEVNGKEFDVN----------------FINTGVPHVVIFVD-DIENIDVF 163 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G + +H F G N++ +V +L +RT+ERGV T ACG+ AS + S Sbjct: 164 GYGRAIRRHKTFAPAGTNVNFVKVIKDNTLLVRTYERGVEDETLACGTGITASGIISVLK 223 Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNN----HVFMTGEAKKEWEGKLDIKT 283 V V GG L + + N +V + G A ++G + I++ Sbjct: 224 GFAASPVKVIARGGDKLSVSLRNPNDKISNVVLEGPALITFKGTVKIQS 272 >gi|228948660|ref|ZP_04110938.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810967|gb|EEM57310.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 268 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICRGVYE 263 >gi|325954346|ref|YP_004238006.1| diaminopimelate epimerase [Weeksella virosa DSM 16922] gi|323436964|gb|ADX67428.1| Diaminopimelate epimerase [Weeksella virosa DSM 16922] Length = 260 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 36/283 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F K +G GN +++D R + I + D ++L+ + D +R Sbjct: 5 FYKYQGAGNDFVLLDDREETFLVDRQKIERICHRNFGVGADGLILLQNS--NPYDFRMRY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E CGNG RC+ +F ++ TFE I G+ A + Sbjct: 63 FNSDGRESSMCGNGGRCIAQFAFDLGLVQQEMTFEAIDGLHRAVVH-------------- 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 P + + +D D+ + P + + ++ G+PH + FV D Sbjct: 109 -----PTYVALEMIDVDKVEVYPSH-------YFLNTGSPHHVQFVADVQKIDVQKEGAK 156 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 + P F +G N++ V ++L +RT+ERGV T ACG+ A+ +A+ K ++ Sbjct: 157 IRYGAPYFEQGSNVNFVEVDENQTLHIRTYERGVEAETLACGTGVTAAAIAAYSAGKVSQ 216 Query: 245 -AVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKLDIK 282 + VK +GG L +++ V++ G A+ +EG + ++ Sbjct: 217 LPIHVKAVGGDLSVQFMLANLRYEQVWLEGPAQFVFEGMITLE 259 >gi|302063355|ref|ZP_07254896.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] Length = 241 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 119/245 (48%), Gaps = 9/245 (3%) Query: 40 TDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSF 97 FDQ++L+ + VD RI N DGSEV+ CGNG RC RF+ + +K Sbjct: 3 RHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQI 62 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 ET GI+ + DG ISVDMG P L + IP + Sbjct: 63 RVETKGGIIELEIRSDGQISVDMGPPRLVPEEIPFQAA-----EQAKSYSLDVDGQTVEL 117 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER 217 VSMGNPHA+ V+ D+ + + + G + +P F VN+ V + LR WER Sbjct: 118 AAVSMGNPHAVLRVD-DINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWER 176 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWE 276 G G T ACG+ ACA+ VA+ + + + + GG L IEW H V MTG A + +E Sbjct: 177 GAGETQACGTGACAAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYE 236 Query: 277 GKLDI 281 G++ + Sbjct: 237 GQVRL 241 >gi|262038392|ref|ZP_06011769.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264] gi|261747610|gb|EEY35072.1| diaminopimelate epimerase [Leptotrichia goodfellowii F0264] Length = 281 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 10/280 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN ++++ + + D A D ++++ + Sbjct: 1 MLKFEKYQGAGNDFIIVNEKDLIEKGIPDYNQFASEVCCRHFGIGADGLLILKYVANMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 F+ N DGS+ CGNG+RC +L + + TF K Sbjct: 60 --FMFYYNSDGSQAPMCGNGIRCFSFYLKNNNVEQEDTFTVKTLSGDLKIETKTENETFF 117 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + + + + + + + MG H++ FV +D Y++ Sbjct: 118 AKVNMGEPVFDVKKLINIEKERFMREKIIIDEKEIEISYIFMGTDHSVIFV-NDFSDYNI 176 Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G+ + + +F + VN++ +V ++++ TWERG G T ACG+ A AS V + Sbjct: 177 DDLGSKIENYTEIFPKKVNVNFVKVHDRSNIEVITWERGAGRTLACGTGATASAVLARIY 236 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 ++V + GG L+I++ +MTG ++K EG+ Sbjct: 237 GYVEDRINVTVPGGKLVIDYAGYGSEAYMTGTSEKIAEGQ 276 >gi|282163528|ref|YP_003355913.1| diaminopimelate epimerase [Methanocella paludicola SANAE] gi|282155842|dbj|BAI60930.1| diaminopimelate epimerase [Methanocella paludicola SANAE] Length = 279 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 24/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K++G GN ++ID D + A D ++ + A Sbjct: 3 IQFTKLQGNGNDFILIDEWDDLLVPDDRKAAFAKKYCHRRFGIGADGVLFLTKGVKAP-- 60 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK---ENRDGSI 116 +RI N DGSE + CGNG+RC ++ + ET G+L + EN I Sbjct: 61 LQMRIFNEDGSEAEMCGNGIRCFAKYALDKRYIVPGLARVETKAGVLEIETKTENGKTYI 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V+MG+P+ D IP + ++ L V+ G PHA+ FV+ L Sbjct: 121 KVNMGKPLFDRVKIPAQGHGEFINVP---------LHGYEVSAVNTGVPHAVVFVD-SLE 170 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 DL L+ +F++G N++ + + +L +RT+ERGV T +CG+ + A+ Sbjct: 171 DPDLMDAAPLIRFDKVFAKGANVNFVQR-DMGNLRVRTYERGVEGETLSCGTGSVAAAAI 229 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + VK GG L I + +++ +M G A+ ++G+++ Sbjct: 230 ARHLGIVRDSAVVKTAGGELRITF-EHDMAYMEGGAETVYKGEIE 273 >gi|225016905|ref|ZP_03706097.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum DSM 5476] gi|224950299|gb|EEG31508.1| hypothetical protein CLOSTMETH_00818 [Clostridium methylpentosum DSM 5476] Length = 287 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 18/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM+G GN + + ++ D I+LI A DA + Sbjct: 10 MEFTKMQGCGNDYIYFNCMEQELSEPGPLSVRLSDRHFGIGGDGIVLICRSDIA--DAKM 67 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRD----GSIS 117 R+ N DGSE + CGN +RCV ++L+ + ET+ G+ ++ S++ Sbjct: 68 RMFNADGSEGKMCGNAIRCVGKYLSDNGLVGDKNELDIETLSGVKHLVLHKQRSGVRSVT 127 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG + +P+ ++ IG ++ N VSMGNPH + + D+ Sbjct: 128 VDMGPAQMHPSSLPVLIEGTQVVNSPVKIGGTSY----NITCVSMGNPHCVVLCD-DVEG 182 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 ++ G +F E VN ++T +L +R WERG G T ACG+ ACA+ VA+ Sbjct: 183 LEIEKIGPQFENSELFPERVNTEFIKLTGKNTLRMRVWERGSGETWACGTGACAAAVAAV 242 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V++ GG LLI++ + V MTG A K ++G + + Sbjct: 243 ENGLCAKGEDIIVRLNGGNLLIKYT-DKTVTMTGTADKVFDGTIKL 287 >gi|253580006|ref|ZP_04857273.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848525|gb|EES76488.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 284 Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 113/276 (40%), Gaps = 12/276 (4%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRII 67 +K +G+GN L++D + + I L D ++ + +RI Sbjct: 10 SKYQGLGNDYLILDPKKNQVQLQGKKIALLCQRGFGLGADGVLY--GPVEIDGKLGVRIF 67 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEP 123 N DGSE GNG+R ++L F+ V++G+P Sbjct: 68 NADGSESAISGNGVRIFAKYLMDNGYITEKKFDIETMSGTIHVECLNSRATEFKVNIGKP 127 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 IP++ ++ ++ F + +++GNPH I F + ++ + + Sbjct: 128 SFISSDIPVSGEVREVIKENFVFHGKEYK----ATCLTVGNPHCIIFTD-NVSAEAVKNL 182 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + F E +NL I R +L++ WERG G T A G+ +CA+ A+ L Sbjct: 183 GPYVENADEFPERMNLQICRQVDKGNLEIEIWERGSGYTKASGTGSCAAAAAAYKLGLVE 242 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++V GG + I+ ++ ++MTG + + Sbjct: 243 SRINVNQPGGMIQIDMEEDETIYMTGTVGYIADISV 278 >gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS] gi|29839348|sp|Q8KAX9|DAPF_CHLTE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21648051|gb|AAM73238.1| diaminopimelate epimerase [Chlorobium tepidum TLS] Length = 257 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 30/279 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +VID R N+T + + A+ D ++L+ + A D + N Sbjct: 1 MSGAGNDFIVIDNRQGLFNLTHEQVRAMCTRRTGIGADGLILLETSETA--DFRMNYHNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSISVDMGEPILD 126 DG CGNG RC V F R K + FE A+ + S+ + M P Sbjct: 59 DGFPGTMCGNGGRCAVWFAHLIGIRPTGKHYRFEAGPSTYEAEVTGEESVRLHMLPPS-- 116 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 N V G+PHAI +V + L GN+ Sbjct: 117 ------------------DFRDGLQAGAWNCHFVDTGSPHAIAYVNNLDQLDVLTEGGNI 158 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 +F +G N++ +T+ ++L +RT+ERGV T ACG+ A+ + S L K + Sbjct: 159 RHNKELFPDGTNVNFLEITAPDALSIRTFERGVEDETLACGTGTVAAALMSFRLGKVTSS 218 Query: 246 -VSVKMLGGG-LLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 V VK+ G L++ +++ + +++ G A+ + G + + Sbjct: 219 LVRVKVKSGETLMVGFNEMMDEIYLEGPARAVYRGTITL 257 >gi|167043791|gb|ABZ08482.1| putative diaminopimelate epimerase [uncultured marine microorganism HF4000_APKG3D20] Length = 280 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 8/281 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 ++F K +GN LV+D R +++ +I + D +L F D + Sbjct: 1 MNFDKYHALGNDYLVLDPRERFESLDERSIIRICDRNFGLGSDG-ILHGPFSSEKADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI+N DGSE + GNG+R R+ ++ + FT ET+ GI+ + + D ++ V Sbjct: 60 RILNPDGSEAEKSGNGLRIFARYLRDQGKVGTEPFTVETLGGIVTCEVSGDANVIVVEMG 119 Query: 123 PILDWKL-IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + IP+ + R+ + + ++GNPH + ++ ++ + Sbjct: 120 QVSFRSDVIPVKVEGEA--REVLNEPIEAAGNSLKYYAATIGNPHCVIPMD-EVSESFVR 176 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L HPMF N+ + ++ +L + WERG G T A GS++ A+ + + Sbjct: 177 EVGPDLENHPMFPNRSNVQLLQILDRNNLKIEIWERGAGYTLASGSSSSAAGAVARKMGA 236 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + ++V M GG + + D +V M G A + LD + Sbjct: 237 CDEEITVHMPGGQIALRIDDTFNVTMKGSATRVGSMTLDPE 277 >gi|239982713|ref|ZP_04705237.1| diaminopimelate epimerase [Streptomyces albus J1074] gi|291454561|ref|ZP_06593951.1| diaminopimelate epimerase [Streptomyces albus J1074] gi|291357510|gb|EFE84412.1| diaminopimelate epimerase [Streptomyces albus J1074] Length = 296 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 112/303 (36%), Gaps = 27/303 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ +++ + AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPDNALDLSPRTVAALCDRRAGIGADGVLHVVRSAAHP 59 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L +A Sbjct: 60 EARHLADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHAGEGDL------PIATRG 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + EP + P+ + + + V+MGNPHA+ FV Sbjct: 114 GVKHAHLAKDEPGAEPGTGPVTVAMGRAALPGGDVTVATAHGTAPALHVNMGNPHAVAFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 174 -ADLADAGELLSAPAVTPAGAYPDGVNVEYVVDRGPGHVAMRVHERGSGETRSCGTGACA 232 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + AV +V + GG L+I + + V MTG A EG++D Sbjct: 233 VAVAAARRDGADPAVTGSPVTYTVDLPGGRLVITEYPDGSVDMTGPAVIVAEGEID---A 289 Query: 285 KWI 287 +W+ Sbjct: 290 EWL 292 >gi|86142838|ref|ZP_01061277.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217] gi|85830870|gb|EAQ49328.1| Diaminopimelate epimerase [Leeuwenhoekiella blandensis MED217] Length = 258 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 114/284 (40%), Gaps = 40/284 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R N T D ++L+ + +D D Sbjct: 3 IPFYKYQGTGNDFVMIDNRQHIFSKNDTKLVKQLCDRKFGIGADGLILLENHED--QDFT 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+ CGNG RC+V F + + S TFE I G+ A Sbjct: 61 MVYYNADGNPSSMCGNGGRCIVAFAQELGVIKNSTTFEAIDGLHEAYIKDGLVHLKM--- 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + G+PH + +V +D+ HYD+ S Sbjct: 118 -----------------------QDVSEIKEYEDHLFLDTGSPHHVQWV-NDIEHYDVKS 153 Query: 183 FGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G L P G N++ T+ LRT+ERGV T +CG+ A A +A Sbjct: 154 NGAALRYGPLYGKAGSNINFVEATTEG-FRLRTYERGVEDETLSCGTGATAVALAIHKQG 212 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 K + ++ +++ GG L IE+ ++F+ G A+K +EG Sbjct: 213 KVSHTSIPLQVEGGNLKIEFEPEGVGYKNIFLIGPAQKVFEGVW 256 >gi|15892502|ref|NP_360216.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7] gi|238650896|ref|YP_002916752.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic] gi|21362478|sp|Q92I41|DAPF_RICCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259595062|sp|C4K2A3|DAPF_RICPU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15619660|gb|AAL03117.1| diaminopimelate epimerase [Rickettsia conorii str. Malish 7] gi|238624994|gb|ACR47700.1| diaminopimelate epimerase [Rickettsia peacockii str. Rustic] Length = 270 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + ++ T L+ N + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH + F + L D Sbjct: 122 SFNEAWMP-------SRDKVWEFAERYMIDLKETICVDIGNPHVVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERG GLT ACGS AC S A + Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ G L ++ +N ++ M G A G+ Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265 >gi|302343307|ref|YP_003807836.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075] gi|301639920|gb|ADK85242.1| diaminopimelate epimerase [Desulfarculus baarsii DSM 2075] Length = 301 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 115/296 (38%), Gaps = 31/296 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQD----- 57 V+F KM G GN ++ID R + A + D ++++ Q Sbjct: 20 VEFCKMTGTGNDFILIDNRRARLAPALMPALAKALCCRRRSVGADGLIVLSPSQRVDAAL 79 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +D N DGS + CGNG RC RF S + G + + G I Sbjct: 80 GKIDFRWDFFNADGSSAEMCGNGGRCAARFAVSIG---------LAGPELIFDTLAGPIR 130 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 +G + +L P +D + + V+ G PHA+ V+ DL Sbjct: 131 AWVGRQTVTLELTPPTGWYDDLRLEI-------GGRTMTIHGVNTGVPHAVVPVD-DLSS 182 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D+ ++G + H F+ L++RT+ERGV T ACG+ A AS + + Sbjct: 183 ADVKNWGREIRFHRHFAPAGTNVNFIAARHGRLEVRTYERGVEDETLACGTGAVASALMA 242 Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWI 287 G L ++V + G L I + + V + G A ++G L W+ Sbjct: 243 GRLGWLKSPITVAVRSGEKLTIHFSQDESGVRQVRLEGAADHVYDGVLGAGAFAWL 298 >gi|254391799|ref|ZP_05006994.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] gi|197705481|gb|EDY51293.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 304 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 109/291 (37%), Gaps = 20/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + F K G N ++I ++ + + L D ++ + Sbjct: 1 MPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 60 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG+R R+L + V + + D ++ Sbjct: 61 ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 120 Query: 117 S-VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 D I ++ + + +G VSMGNPHA+ FV+ DL Sbjct: 121 PGADGTTARSAPGAITVSMGRAVLPAETVTVGV--GARQWPTTHVSMGNPHAVAFVD-DL 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H ++ +GVN+ + +R ERG G T +CG+ ACA VA Sbjct: 178 DHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGETRSCGTGACAVAVA 237 Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + AV +V + GG L+I + V MTG A EG + Sbjct: 238 AARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEGTI 288 >gi|326776157|ref|ZP_08235422.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1] gi|326656490|gb|EGE41336.1| Diaminopimelate epimerase [Streptomyces cf. griseus XylebKG-1] Length = 300 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 38/307 (12%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--- 57 +S + F K G N +++ + + + L D ++ + Sbjct: 14 STSQIAFLKGHGTENDFVIVPDPDNALTLPAATVARLCDRRAGIGGDGLLHVVRSAAHPE 73 Query: 58 -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKE 110 + + F+ N DGS + CGNG+R +L + T T G Sbjct: 74 ARSMADAAEWFMDYRNADGSIAEMCGNGVRVFAHYLQRAGLVEEGDLTVATRGGPKRVHL 133 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++G I+V MG +L + + ++ V+MGNPHA+ F Sbjct: 134 AKNGDITVSMGRALLPGESVTVSVGDR----------------SWPARNVNMGNPHAVAF 177 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V+ DL H ++ ++ +GVN+ + +R ERG G T +CG+ AC Sbjct: 178 VD-DLDHAGDLLTAPPVSPGTVYPDGVNVEFVVDRGPRHVGMRVHERGSGETRSCGTGAC 236 Query: 231 ASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A VA+ + A + V + GG L+I H + + MTG A EG +D Sbjct: 237 AVAVATARRDGADPATTGLPATYRVDLPGGTLVITEHPDGAIDMTGPAVIVAEGVID--- 293 Query: 284 GKWIKKN 290 W++ + Sbjct: 294 RAWLETS 300 >gi|229586693|ref|YP_002845194.1| diaminopimelate epimerase [Rickettsia africae ESF-5] gi|259595061|sp|C3PNE1|DAPF_RICAE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|228021743|gb|ACP53451.1| Diaminopimelate epimerase [Rickettsia africae ESF-5] Length = 270 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + ++ T L+ N + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH + F + L D Sbjct: 122 SFNEAWMP-------NRDKVWEFAERYMIDLKETICVDIGNPHVVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERG GLT ACGS AC S A + Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ G L ++ +N ++ M G A G+ Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265 >gi|116753767|ref|YP_842885.1| diaminopimelate epimerase [Methanosaeta thermophila PT] gi|121694439|sp|A0B6C1|DAPF_METTP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116665218|gb|ABK14245.1| diaminopimelate epimerase [Methanosaeta thermophila PT] Length = 279 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 25/283 (8%) Query: 6 VDFAKMEGIGNKILVIDM----RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 ++F K+ G GN ++ID R D + + + D ++ + + A D Sbjct: 4 LEFVKLHGNGNDFILIDELNGERIPEDEKSEASRILCHRNFGIGGDGVLFLVPSERA--D 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK----RKSFTFETIRGILVAKENRDGSIS 117 +R+ DGSE + CGNG+RC+ + T + I V ++ + Sbjct: 62 IGMRLFQPDGSEAEMCGNGIRCLAKHAWESGYVGERFSVETLAGVIPIQVRRDRKGFWAR 121 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V+MG P + IP + L V+ G PHA+ FVE+ Sbjct: 122 VEMGIPRFERSEIPADGEGTFLKVP---------LHGFEVSAVNTGVPHAVIFVEN--LD 170 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236 + + F EG N++ R+ L++RT+ERGV T +CG+ + A+ + Sbjct: 171 IPVEQIAPKIRHSSCFPEGANVNFVRL--GNHLEVRTFERGVEAETLSCGTGSVAAAAVA 228 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V V GG L I + FM G A G + Sbjct: 229 RRLGLVGETVEVMTKGGPLRISFA-GEKAFMEGPAVTVCRGVV 270 >gi|34580505|ref|ZP_00141985.1| diaminopimelate epimerase [Rickettsia sibirica 246] gi|28261890|gb|EAA25394.1| diaminopimelate epimerase [Rickettsia sibirica 246] Length = 270 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +++ T L+ N + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTRKQDITVMVGNKKLLCNVNDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH + F + L D Sbjct: 122 SFNEAWMP-------SRDKVWEFAERYMIDLKEIICVDIGNPHVVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERG GLT ACGS AC S A + Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKRGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ G L ++ +N ++ M G A G+ Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265 >gi|262277883|ref|ZP_06055676.1| diaminopimelate epimerase [alpha proteobacterium HIMB114] gi|262224986|gb|EEY75445.1| diaminopimelate epimerase [alpha proteobacterium HIMB114] Length = 270 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 137/281 (48%), Gaps = 16/281 (5%) Query: 6 VDF--AKMEGIGNKILVIDMRGCHDNITSD--AINALSTD-DNTHFDQIMLIHDFQDASV 60 + F KM+G+GN L+ID R +++ I LS FDQ++ + + A Sbjct: 1 MKFKAFKMDGLGNDFLIIDNRNQKISLS--PEQILKLSNRERGIGFDQLIYMENSTQA-- 56 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA I+ N DG +CGNG RC+ L + + TF+ + + +N D I+V M Sbjct: 57 DAEIKYFNSDGRMADACGNGNRCISDILIKEKNKDNVTFKVNSFVHIGSKNTDNLINVIM 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 +P + IP+ D + ++++GNPH +FF + + +L Sbjct: 117 PKPKIKLSEIPVTN-----DVQNNPFLIEINSKKLKGHLINVGNPHIVFFEK--ISDEEL 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G ++ F + +N++ A + + +++D+ WERG G T ACG+AACA+ + L Sbjct: 170 KKIGPIIENLKYFPDRINVTFADIQNEDNIDINVWERGAGKTLACGTAACATAYIASDLK 229 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T V++ G LLI+ + + + MTG ++ E ++++ Sbjct: 230 LTKNPVNIHFQKGHLLIKINSDKTMMMTGPVSEKKEIEVNL 270 >gi|229141655|ref|ZP_04270185.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26] gi|229187176|ref|ZP_04314321.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1] gi|228596186|gb|EEK53861.1| Diaminopimelate epimerase [Bacillus cereus BGSC 6E1] gi|228641723|gb|EEK98024.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST26] Length = 268 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWTEEGNVLMKGPAEVICHGVYE 263 >gi|239947305|ref|ZP_04699058.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921581|gb|EER21605.1| diaminopimelate epimerase [Rickettsia endosymbiont of Ixodes scapularis] Length = 270 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSHDLSQLAKNMADRHTGIGCDQFIIYEEHDDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +K T L+ N + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKNLLCNVNDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH + F + L D Sbjct: 122 SFNEAWMP-------SRDRIWEFAERYMIDLKETICVDIGNPHLVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WE+GVGLT ACGS AC S A L + Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWEQGVGLTLACGSGACGSFAAGLKLGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V G L ++ +N ++ M G A G+ Sbjct: 232 SPSTVVFKHGNLTMK-EENGNIIMQGAATLVARGE 265 >gi|305667268|ref|YP_003863555.1| diaminopimelate epimerase [Maribacter sp. HTCC2170] gi|88709315|gb|EAR01548.1| diaminopimelate epimerase [Maribacter sp. HTCC2170] Length = 258 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 108/281 (38%), Gaps = 38/281 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN ++ID R + D ++L+ + D +VD + Sbjct: 5 FYKYQGTGNDFVMIDNRSKLFPKENINLIARLCDRRFGIGADGLILLEN--DETVDFKMV 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124 N DG++ CGNG RC+V F T F I G+ A Sbjct: 63 YFNSDGNQSSMCGNGGRCLVAFANYLGMISKETVFRAIDGLHEATITNG----------- 111 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + + F + G+PH + V+ DL + + G Sbjct: 112 ---------------VVNLKMNNVDEIVVKPSSFFLDTGSPHHVQLVK-DLGSFQVFEEG 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + EG N++ T + +RT+ERGV T +CG+ A +A K + Sbjct: 156 KKIRYGVYGQEGSNINFVESTGKATFAVRTYERGVEDETLSCGTGVTAVAIAMHKAKKVD 215 Query: 244 RAV-SVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGKL 279 V + GG L + E++ ++V + G AK+ ++G++ Sbjct: 216 SNVIDITTKGGALQVMFLEEFNKYSNVRLIGPAKQVFKGEM 256 >gi|260063133|ref|YP_003196213.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501] gi|88784702|gb|EAR15872.1| diaminopimelate epimerase [Robiginitalea biformata HTCC2501] Length = 257 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 63/281 (22%), Positives = 106/281 (37%), Gaps = 38/281 (13%) Query: 8 FAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 F K + GN ++ID R G N +S N D ++L+ + D D + Sbjct: 5 FYKYQATGNDFILIDNRLGGFPGNDSSHIANLCHRRFGIGADGLILLEN--DPGADFRMV 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG CGNG RC+ F + F G+ A+ + + Sbjct: 63 YFNSDGRPGSMCGNGGRCITAFAKFLGIVGDTCRFVASDGLHEARISGE----------- 111 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + S D +N ++ G+PH + V L YD+ G Sbjct: 112 --------SVSLRMADVGEIRHK-------KNYSFLNTGSPHHVQEVSG-LEAYDVDREG 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT- 242 L G N++ + L +RT+ERGV T +CG+ A+ +A K Sbjct: 156 KRLRYSLYGEPGSNINFVELQPDGVLHVRTYERGVEAETYSCGTGVTAAAIAMEAQGKHP 215 Query: 243 NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 + ++ GG L + + + +++TG A+ ++G L Sbjct: 216 EQPTRIRTRGGDLEVAFRKDAGAYTDIWLTGPARMVFKGTL 256 >gi|257463649|ref|ZP_05628040.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 267 Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 17/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME GN ++ D R I A D I+ A D + Sbjct: 1 MKFWKMEAAGNDFVIFDGRNRKIREINKLAKKLCDRHFGIGADGILFCESSSIA--DMKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG+RC+ R++ + + + T ET G+ D Sbjct: 59 NYYNSDGSRGEMCGNGIRCLSRYMYENEIVGKTTMTIETDNGVKEIVLTVDE-------- 110 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + +++ + V++G PH VED + +L Sbjct: 111 -KNQVSSVQVKMGKAEWEKEFQEERVEIEGREFVFYRVTVGVPHIAILVEDFMKDEELNY 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G+ L KHP+F + N++ ++ + + + ++TWERG G T C + + V L K Sbjct: 170 WGSRLEKHPLFPKKTNVNFVKLLNAKEVQIKTWERGAGRTLGCSTGCSSCGVILQHLQKI 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMT-GEAKKEWEGKLDI 281 + GG + +E D+ V M G+A + G +D+ Sbjct: 230 SGEAHFYTEGGDVFVEVKDD--VVMIYGKANFVFAGDIDV 267 >gi|262341161|ref|YP_003284016.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272498|gb|ACY40406.1| diaminopimelate epimerase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 268 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 114/283 (40%), Gaps = 26/283 (9%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 +F K +G GN +++D R + L D I+LI + D+ D +++ Sbjct: 4 NFFKYQGTGNDFILLDDRTKKIVKEYTILKKLCNRHFGIGADGIILIQN--DSKSDFYMQ 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DG E CGNG RC + F K + G I + Sbjct: 62 YYNSDGKESTMCGNGGRCAIFFAKKLGINKENKIHFRA----IDGHHYGLIIKNEKNDKC 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + + +I ++ G+PH I FVE+ Sbjct: 118 LVSI------------NLINIQKNEIEIHPEHVFLNTGSPHHIIFVENIKEINVYEEGKK 165 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 + ++P +GVN++ + ++L +RT+ERGV T +CG+ ASV+A+ ++ + Sbjct: 166 IRFRNPYLKKGVNVNFVEILENKTLQVRTYERGVENETLSCGTGVTASVIAAYETNRISS 225 Query: 245 --AVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281 + V +GG L + + + +++TG + ++G + I Sbjct: 226 IEKILVHTIGGKLWVSLKETKNEYKDIYLTGSVQFIFQGCIFI 268 >gi|124008484|ref|ZP_01693177.1| diaminopimelate epimerase [Microscilla marina ATCC 23134] gi|123985992|gb|EAY25842.1| diaminopimelate epimerase [Microscilla marina ATCC 23134] Length = 258 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 38/285 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 V F K +G GN ++ID R I D ++L+ + + D Sbjct: 3 VSFYKYQGTGNDFVMIDDRAAQFPIDNYELIARLCDRRFGIGADGLILLRNAE--GYDFR 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N +G E CGNG RC V+F + T +A + Sbjct: 61 MVYFNANGKEGSMCGNGGRCTVKFAQFLGIFEHET------HFIAVDG------------ 102 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 P + + + + G+PH + FV ++L +D+ + Sbjct: 103 -------PHDAKVEDGLVHLKMGDVQTVENNLDHYFLDTGSPHYVQFV-NNLPQFDVFAE 154 Query: 184 GNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + + F E G N++ + + +RT+ERGV T +CG+ A+ + SG L + Sbjct: 155 GKSIRYNERFKEVGTNVNFVEKIGEQHIFVRTYERGVEDETYSCGTGVTAAALTSG-LQQ 213 Query: 242 TNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDI 281 N +++K LGG L I + + ++++ G A+ +EG + + Sbjct: 214 MNSPINIKTLGGDLQISFTKKLDQEFTNIYLIGPAEAVFEGVVSV 258 >gi|52081707|ref|YP_080498.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|52787092|ref|YP_092921.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|319647623|ref|ZP_08001841.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2] gi|81608949|sp|Q65FD6|DAPF_BACLD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|52004918|gb|AAU24860.1| diaminopimelate epimerase [Bacillus licheniformis ATCC 14580] gi|52349594|gb|AAU42228.1| DapF [Bacillus licheniformis ATCC 14580] gi|317389964|gb|EFV70773.1| diaminopimelate epimerase [Bacillus sp. BT1B_CT2] Length = 285 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 142/287 (49%), Gaps = 17/287 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 F KM G+GN + ++ H ++ A+ S D ++LI A V Sbjct: 5 RFTKMHGLGNSYIYVNQFEEHLPEELLSDLAVKVSSVYTGIGSDGMILICPSDRAPV--K 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG----SIS 117 +RI N DGSE ++CGNG+RCV ++ + +F ET+ G++ A+ D S + Sbjct: 63 MRIFNSDGSEGKNCGNGLRCVAKYAYEHKLVEETSFLIETLSGLVKAQVEVDEGKVVSAT 122 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMGEP L +P+ + + + VSMGNPH +F+++ D+ Sbjct: 123 VDMGEPRLLKSDMPMRGE---QGSETINEKMIFGGREMKGTAVSMGNPHIVFYLD-DIEK 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L + G L+ K F EGVN+ V + L R WERG G+T ACG+ ACA+ V+S Sbjct: 179 APLTTMGPLIEKDERFPEGVNVEFVEVENENELHFRVWERGSGITQACGTGACAAAVSSV 238 Query: 238 CLH--KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 K + ++V + GG L+I W ++ V MTG A+ EG+ I Sbjct: 239 LNGYSKRDTDITVHLAGGDLIINWKNDGRVMMTGPAETVCEGEFFIS 285 >gi|157828451|ref|YP_001494693.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933166|ref|YP_001649955.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa] gi|166225751|sp|A8GS10|DAPF_RICRS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|189082838|sp|B0BXH3|DAPF_RICRO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157800932|gb|ABV76185.1| diaminopimelate epimerase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908253|gb|ABY72549.1| diaminopimelate epimerase [Rickettsia rickettsii str. Iowa] Length = 270 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ +L + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFILYEEHNDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + ++ T L+ N + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKQDITVMVGNKKLLCNVNDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH + F + L D Sbjct: 122 SFNEAWMP-------SRDKVWEFAERYMIDLKETICVDIGNPHVVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERGVGLT ACGS AC S A + Sbjct: 173 GERLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGLTLACGSGACGSFAAGLKHGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ G L ++ +N ++ M G A G+ Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265 >gi|195953539|ref|YP_002121829.1| diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1] gi|229807503|sp|B4U9P0|DAPF_HYDS0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|195933151|gb|ACG57851.1| Diaminopimelate epimerase [Hydrogenobaculum sp. Y04AAS1] Length = 277 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 114/285 (40%), Gaps = 30/285 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDNI--------TSDAINALST-DDNTHFDQIMLIHDFQDAS 59 K +G GN ++ID R ++ + L + D ++LI ++ Sbjct: 4 TKYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTK 63 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118 N DGS + CGNG RC RF + + K FETI G + A + V Sbjct: 64 NHFSWAFFNADGSAAEMCGNGSRCAARFAYEKDIAPKDIVFETIAGEIEAHIMDSKRVKV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-LYH 177 + K I + + V+ G PH + FV++D L + Sbjct: 124 QLTPYHSHQKNIEIKTEY----------------GTFKGHFVNTGVPHFVIFVDEDELDN 167 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA 235 D+ G + H F +G N++ T S +RT+ERGV T ACG+ + A + Sbjct: 168 LDVEKVGRAIRYHEYFAPKGTNVNFVAKTKNGSFRIRTYERGVEGETLACGTGSAACGIN 227 Query: 236 SGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + L + V + G LL +N+ VF+ G K +EG L Sbjct: 228 AYLLGLSASNIVDIITKSGELLKITIENDKVFLEGPTTKVFEGML 272 >gi|32491019|ref|NP_871273.1| hypothetical protein WGLp270 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340036|sp|Q8D2T4|DAPF_WIGBR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|25166225|dbj|BAC24416.1| dapF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 276 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 74/281 (26%), Positives = 126/281 (44%), Gaps = 12/281 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 + F+KM +GN ++++ +NI+ I LS FDQ++LI F I Sbjct: 1 MKFSKMHSLGNDFVIVNNIDKKNNISPIFIKKLSDRYTGIGFDQLILIEFFCKKYFYFKI 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGE 122 +I N D SE C NG+RCV FL + K G+ ++ I V + Sbjct: 61 KIFNSDSSESFQCINGIRCVFMFLKIKKLIKKNIAFIGNNLGLSKTLMTKNKLICVKIKP 120 Query: 123 PILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P K I + ++ ++ I + V +GNPH I + ++ + + + Sbjct: 121 PRFYIEKDILVNPKYNNKEKIILRI----FKKKITCYFVFVGNPHCIIISK-NIEYNNFS 175 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 L K+ +F +N+SI + + + L+ +ERG G T +CGSAA A+ + K Sbjct: 176 LLSKYLLKNNIFPNKINISIMNILDFDLIKLKVYERGSGETQSCGSAAAAAAAVAIYYKK 235 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMT--GEAKKEWEGKLD 280 N+ + V G L + W + FM+ G A ++GK++ Sbjct: 236 LNKKIKVNFSRGNLYVYWEKIGN-FMSIIGPANHIYDGKIN 275 >gi|157964498|ref|YP_001499322.1| diaminopimelate epimerase [Rickettsia massiliae MTU5] gi|167012037|sp|A8F1I9|DAPF_RICM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157844274|gb|ABV84775.1| Diaminopimelate epimerase [Rickettsia massiliae MTU5] Length = 270 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQFIIYEEHNDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +K T L+ N + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVGNKKLLCNVNDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH I F + L D Sbjct: 122 SFNEAWMP-------SRDKVWAFAERYMIDLKETICVDIGNPHLIIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERG GLT ACGS AC S A L + Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 ++ G L ++ +N ++ M G A G+ Sbjct: 232 SPSTIVFKHGNLTMK-EENGNIIMQGAATLVARGE 265 >gi|228929965|ref|ZP_04092976.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829645|gb|EEM75271.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 268 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137 ++ ++ FT ET+ GI+ A+ + +DMG P L IP+ + Sbjct: 64 AKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F + F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V + GG L Sbjct: 179 NVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWIEEGNVLMKGPAEVICHGVYE 263 >gi|261749330|ref|YP_003257015.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497422|gb|ACX83872.1| diaminopimelate epimerase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 267 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 37/289 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 +DF K +G GN +++D R + D I+LI + D S D + Sbjct: 3 MDFFKYQGTGNDFIILDNRKKRIPEEDHTLFTRLCDRHFGIGADGIILIKN--DPSRDFY 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 ++ N DG E CGNG RC + F K I D Sbjct: 61 MKYYNSDGKESTMCGNGGRCAIAFSKKLGIPKENKIYFRA------------IDGDHCGI 108 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 I + LI L I + ++ G+PH + FV +++ D+ Sbjct: 109 IQERGLISL---------KFIDIEINMIKISKKYVFLNTGSPHHVLFV-NNIKEIDVCKQ 158 Query: 184 GNLLAKHPMFSEG--VNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + H +S VN++ ++ +L +RT+ERGV T +CG+ ASV+A+ Sbjct: 159 GRKIRFHKSYSSKGGVNVNFVEISGKNTLQVRTYERGVENETLSCGTGITASVLAAYETG 218 Query: 241 KT----NRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 + + V + LGG L + + +++TG + +EG + I Sbjct: 219 RISTNKEKKVLISTLGGKLWVSFEKKHNQYKEIYLTGSVQFIFEGWVHI 267 >gi|318059592|ref|ZP_07978315.1| diaminopimelate epimerase [Streptomyces sp. SA3_actG] gi|318075956|ref|ZP_07983288.1| diaminopimelate epimerase [Streptomyces sp. SA3_actF] Length = 295 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 107/296 (36%), Gaps = 26/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M ++ + F K G N ++I ++ DA+ AL D ++ + Sbjct: 1 MSTA-IGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + VA Sbjct: 60 EGRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + E I + + LR V MGNPHA+ FV Sbjct: 114 GVKRAHLAKEEAPGAPGEITV--EMGVARLPEGEVEVRVGSGLRPATHVDMGNPHAVTFV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + + GVN+ + +L +R ERG G T +CG+ ACA Sbjct: 172 -TDLAEAGELRTAPEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSCGTGACA 230 Query: 232 SVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ +T R +V + GG L I + V MTG A EG +D Sbjct: 231 VAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGTID 286 >gi|15604280|ref|NP_220796.1| diaminopimelate epimerase [Rickettsia prowazekii str. Madrid E] gi|6225239|sp|Q9ZDB7|DAPF_RICPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|3860972|emb|CAA14872.1| DIAMINOPIMELATE EPIMERASE (dapF) [Rickettsia prowazekii] gi|292572028|gb|ADE29943.1| Diaminopimelate epimerase [Rickettsia prowazekii Rp22] Length = 270 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 18/278 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++F KM G+GN ++++ R N++ A N DQ ++ + D Sbjct: 3 NKINFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCIIYE----ENND 58 Query: 62 AF-IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + + I N DGS + CGN +RC+ + + +++ T + L+ ISV++ Sbjct: 59 FYTMIIYNIDGSSAKLCGNAIRCLAKLIYLDTGKQNITVMVGKKKLLCNVKAANKISVNV 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G + +P + L L+ V +GNPH I F + L D Sbjct: 119 GNVSFNETWMP-------SRDKIWKFAERYMLDLKEMLCVDIGNPHLIIFSK--LEPQDK 169 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L +F++GVN++ A V + L WERG GLT ACGS ACAS A L Sbjct: 170 TIIGQKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACASFAAGLKLG 228 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + +V G L I ++ ++ M G A G+ Sbjct: 229 FVHSPSTVVFEYGNL-IMREEDGNIIMQGAATFVMRGE 265 >gi|291288390|ref|YP_003505206.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809] gi|290885550|gb|ADD69250.1| diaminopimelate epimerase [Denitrovibrio acetiphilus DSM 12809] Length = 270 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 120/280 (42%), Gaps = 25/280 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI---NALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + ID R + + + + D +MLI + A D Sbjct: 3 IPFYKMSGAGNDFIFIDNRDGKADGIDRQTLVTKTCARNISVGADGMMLIENSDKA--DF 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 R NCDGSE + CGNG RC RF + + + TFET+ GI+ A+ ++ V + Sbjct: 61 KWRFYNCDGSEAEMCGNGARCAGRFAYLNNITGEKMTFETLAGIIEAEIKEGVNVKVQLT 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + V+ G PHA+ F +D+ + D+ Sbjct: 121 TPFDEKSD----------------YQIELDEKKLDISSVNTGVPHAVMFC-NDIENIDIM 163 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239 G+ + H F G N + + L +RT+ERGV T ACG+ A + + Sbjct: 164 KLGSGIRYHSHFEPAGTNTNFCEMNKDGVLRVRTYERGVEGETMACGTGCVACALFAVKK 223 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T V K G +L + +N V++ GEA+ ++G+L Sbjct: 224 GLTKSPVKCKTTSGLMLTVYLENGKVYLEGEARVVYKGEL 263 >gi|302522292|ref|ZP_07274634.1| diaminopimelate epimerase [Streptomyces sp. SPB78] gi|302431187|gb|EFL03003.1| diaminopimelate epimerase [Streptomyces sp. SPB78] Length = 295 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 107/296 (36%), Gaps = 26/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M ++ + F K G N ++I ++ DA+ AL D ++ + Sbjct: 1 MSTA-IGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + VA Sbjct: 60 EGRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + E I + + LR V MGNPHA+ FV Sbjct: 114 GVKRAHLAKEEAPGFPGEITV--EMGVARLPEGEVEVRVGSGLRPATHVDMGNPHAVTFV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + + GVN+ + +L +R ERG G T +CG+ ACA Sbjct: 172 -TDLAEAGELRTAPEVLPASAYPRGVNVEFVVDRAPGALAMRVHERGSGETRSCGTGACA 230 Query: 232 SVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ +T R +V + GG L I + V MTG A EG +D Sbjct: 231 VAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGTID 286 >gi|326443854|ref|ZP_08218588.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 318 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 109/291 (37%), Gaps = 20/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 V F K G N ++I ++ + + L D ++ + Sbjct: 15 VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 74 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG+R R+L + V + + D ++ Sbjct: 75 ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 134 Query: 117 S-VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 D I ++ + + +G VSMGNPHA+ FV+ DL Sbjct: 135 PGADGTTARSAPGAITVSMGRAVLPAETVTVGV--GARQWPTTHVSMGNPHAVAFVD-DL 191 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H ++ +GVN+ + +R ERG G T +CG+ ACA VA Sbjct: 192 DHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGETRSCGTGACAVAVA 251 Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + AV +V + GG L+I + V MTG A EG + Sbjct: 252 AARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEGTI 302 >gi|114568573|ref|YP_755253.1| diaminopimelate epimerase [Maricaulis maris MCS10] gi|114339035|gb|ABI64315.1| diaminopimelate epimerase [Maricaulis maris MCS10] Length = 294 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 99/276 (35%), Positives = 154/276 (55%), Gaps = 14/276 (5%) Query: 11 MEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHD-FQDASVDAFIRII 67 M G GNK ++ D R N+++D++ A++ FDQ++++ D + DAF+RI Sbjct: 28 MNGAGNKFILADVRGRAGVFNLSADSVKAMARAH--PFDQLLVLEDS---DTSDAFMRIW 82 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DG EV +CGNG R + + + +T G+L+A++ S+SVDMGEP LDW Sbjct: 83 NSDGDEVGACGNGTRAAAWAMMQETGSDTLSLDTAGGVLLARDAGPMSVSVDMGEPRLDW 142 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IPL R D + D + + + P VSMGNPHA+FF+ D+ ++ + G ++ Sbjct: 143 TEIPLVRPMDTLQLD--FAVEKDGVRIEAPGAVSMGNPHAVFFI-RDIANFPVTGLGPVV 199 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 P+F E VN A++ + LR WERG G+TAACG+ ACA++VA+ +R Sbjct: 200 EHAPLFPERVNAGFAQILDARHIRLRVWERGAGITAACGTGACAALVAAHRRGLCDRQAM 259 Query: 248 VKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 + GG L +EW +NHV +TG + EG +++ Sbjct: 260 IHADGGDLSVEWRKSDNHVILTGPVED--EGPIELD 293 >gi|294815503|ref|ZP_06774146.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] gi|294328102|gb|EFG09745.1| Diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 321 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 109/291 (37%), Gaps = 20/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 V F K G N ++I ++ + + L D ++ + Sbjct: 18 VPFLKGHGTENDFVIIPDPENALDLPASTVARLCDRRAGIGGDGVLHVVRSAAHPEARAM 77 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG+R R+L + V + + D ++ Sbjct: 78 ADEAEWFMDYRNADGSIAEMCGNGVRVFARYLQYAGHTDAGDLAVATRGGVKRVHIDKAV 137 Query: 117 S-VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 D I ++ + + +G VSMGNPHA+ FV+ DL Sbjct: 138 PGADGTTARSAPGAITVSMGRAVLPAETVTVGV--GARQWPTTHVSMGNPHAVAFVD-DL 194 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H ++ +GVN+ + +R ERG G T +CG+ ACA VA Sbjct: 195 DHAGNLHEEPTRTPSHVYPDGVNVEFVADRGERHVAMRVHERGSGETRSCGTGACAVAVA 254 Query: 236 SGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + AV +V + GG L+I + V MTG A EG + Sbjct: 255 AARRDGLDPAVTGSPVSYTVDLPGGRLVITERPDGEVEMTGPAVIVAEGTI 305 >gi|157825700|ref|YP_001493420.1| diaminopimelate epimerase [Rickettsia akari str. Hartford] gi|166225748|sp|A8GND7|DAPF_RICAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157799658|gb|ABV74912.1| diaminopimelate epimerase [Rickettsia akari str. Hartford] Length = 270 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 73/275 (26%), Positives = 120/275 (43%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R +++ A N DQ ++ + D Sbjct: 5 INFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQFIIYEEHNDF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +K T L+ + +ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITVMVCNKKLLCNVEDENNISVNVGSV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + + L+ V +GNPH + F + L D Sbjct: 122 SFNEAWMP-------SRDKIWELAERYMIDLKETICVDIGNPHLVIFSK--LEPQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F++GVN++ A V + L WERGVG T ACGS AC S A L + Sbjct: 173 GEKLQAKELFADGVNVNFAEVKD-NKIYLSVWERGVGFTLACGSGACGSFAAGLKLGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 V G L ++ +N ++ M G AK +G+ Sbjct: 232 APSMVVFKHGILTMK-EENGNIIMQGSAKLVAQGE 265 >gi|258405993|ref|YP_003198735.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692] gi|257798220|gb|ACV69157.1| diaminopimelate epimerase [Desulfohalobium retbaense DSM 5692] Length = 281 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 65/282 (23%), Positives = 108/282 (38%), Gaps = 23/282 (8%) Query: 9 AKMEGIGNKILVIDMRGCHDNITS--DAINALSTD-DNTHFDQIMLI-HDFQDASVDAFI 64 KM+G GN ++ID + + + D ++ + D+ D Sbjct: 12 YKMQGSGNDFILIDNTESRVPQKAMAEWAQKICRRAFGAGADGLIFLDEAPADSEADYIW 71 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS + CGNG RC R + ++ T G + A+ P Sbjct: 72 HFYNADGSRAEMCGNGSRCAARLAYELELAGRTHVLGTDAGPVRAEVL-----------P 120 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 D + L D V+ G PH + V+D Sbjct: 121 ETDEAKVQLTAPIDLKTSMTLSAAGRE----LTVHHVNTGVPHVVQVVDDVDSVDLATIA 176 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 L G N++ +VT +++ LRT+ERGV T ACG+ A A+V + L Sbjct: 177 PALRYHDAFAPAGGNINFIQVTGPDTIRLRTYERGVEDETYACGTGAAAAVYIANQLGLC 236 Query: 243 NRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 A +V GG L I +N ++++ G+A ++G+L +++ Sbjct: 237 APAATVTTSGGEHLTIS-QENGNLYLQGQAVLVYKGRLFLRS 277 >gi|333024035|ref|ZP_08452099.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071] gi|332743887|gb|EGJ74328.1| putative diaminopimelate epimerase [Streptomyces sp. Tu6071] Length = 295 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 105/296 (35%), Gaps = 26/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M ++ + F K G N ++I ++ DA+ AL D ++ + Sbjct: 1 MSTA-IGFLKGHGTQNDFVIIPDPENTIDLGPDAVAALCDRRAGIGGDGLLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + VA Sbjct: 60 EGRAYADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + E I + + LR V MGNPHA+ FV Sbjct: 114 GVKRAHLAKDEAPGVPGEITV--EMGVARLPEGEVEVRVGSGLRPATHVDMGNPHAVTFV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + + GVN+ + +L +R ERG G T +CG+ ACA Sbjct: 172 -TDLAEAGELRTAPEVLPASAYPHGVNVEFVVDRAPGALVMRVHERGSGETRSCGTGACA 230 Query: 232 SVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + +V + GG L I + V MTG A EG +D Sbjct: 231 VAVAAARRDGLDPARTGHPATYTVDLPGGRLTITERADGVVEMTGPAVLVAEGTID 286 >gi|332876916|ref|ZP_08444669.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685024|gb|EGJ57868.1| diaminopimelate epimerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 263 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 39/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F K +G GN +++D R T + D ++L+ + D + D Sbjct: 1 MNFYKYQGTGNDFVMVDNREGTFPKGDTELIAHLCHRRFGIGADGLILLEN--DPAYDFR 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RCVV F S F I G A + + + M Sbjct: 59 MVYYNADGRESTMCGNGGRCVVAFAREIGVMTGNSTRFIAIDGEHHATIDAQNKVHLQMK 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + + G+PH + +V D+ D+ Sbjct: 119 DV-------------------------QTIDVHPDYVFLDTGSPHHVQWV-ADVDKVDVK 152 Query: 182 SFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + G L ++++ +I + + +RT+ERGV T +CG+ A +A Sbjct: 153 TEGAALRYGDLYADKGGSNINFVSPTADGFAVRTYERGVEDETYSCGTGVTAVAIALYHT 212 Query: 240 HKTNRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 + V++ GG L + + V+++G A+K ++ Sbjct: 213 AQITTPAVTLHTKGGDLKVTFEKQGALYQQVYLSGPAEKVFKIS 256 >gi|226312450|ref|YP_002772344.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] gi|226095398|dbj|BAH43840.1| probable diaminopimelate epimerase [Brevibacillus brevis NBRC 100599] Length = 280 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 77/291 (26%), Positives = 123/291 (42%), Gaps = 29/291 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQD 57 M + F KM G GN +V+D R +++ N + D ML+ + Sbjct: 1 MFERGIPFKKMNGCGNDFIVVDNRDGLLNEVALSAFVQNVCRRGASIGADGFMLLENSNI 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSI 116 A D +R N DGSE + CGNG RC+ RF +FET+ GI A+ N++ Sbjct: 61 A--DFKMRYFNADGSEGEMCGNGARCMSRFAYHIGAAETKMSFETMAGIYQAELNQNSVK 118 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--D 174 P+ KL + + ++ G PH ++FVE+ Sbjct: 119 VKFPDVPLQALKL-----------NQPYEWDGPSGVYHYGVV----GVPHTVWFVENVIA 163 Query: 175 LYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACAS 232 + L +G ++ F G N++ ++L +RT+ERGV T ACGS + A+ Sbjct: 164 IADDQLREWGRMVRNDLQQFPNGTNVNFVERIDRQTLSIRTYERGVEAETYACGSGSTAA 223 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 + +G L + V++ GG L I H + V++ G + EG L Sbjct: 224 AIIAGILGHVDTPVNLLTRGGPLKISCHLTDYAAESVYLEGNSMLVAEGYL 274 >gi|302558007|ref|ZP_07310349.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] gi|302475625|gb|EFL38718.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] Length = 289 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 120/308 (38%), Gaps = 39/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ A+ AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGLLHVVRSAAHP 59 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK 109 A + F+ N DGS + CGNG+R R+L + T G+ Sbjct: 60 EARHMAADAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVAEGDLAVATRGGVKTVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++G I+V MG +L + ++ V+MGNPHA+ Sbjct: 120 IAKEGDITVGMGGALLPEGDVTVSVGGR----------------SWPARNVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H + + +GVN+ + LR ERG G T +CG+ A Sbjct: 164 FVD-DLAHAGDLLGPPPFSPATAYPDGVNVEFVVDRGPRHVALRVHERGSGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + V+ V + GG L+I + + MTG A EG+++ Sbjct: 223 CAVAVAAARRDGIDPRVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEIE-- 280 Query: 283 TGKWIKKN 290 +W++ Sbjct: 281 -AEWLESA 287 >gi|325105470|ref|YP_004275124.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145] gi|324974318|gb|ADY53302.1| diaminopimelate epimerase [Pedobacter saltans DSM 12145] Length = 280 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 111/289 (38%), Gaps = 41/289 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R + I + D +M + Q D Sbjct: 17 LKFYKYQGAGNDFIIVDNRENEVDHRNPALIEGICNRRFGVGGDGMMFLQ--QKDGYDFE 74 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG RC+V F S T F + G AK + G Sbjct: 75 MVYYNSDGQPSSMCGNGGRCIVAFAKYLKVIDSETDFLAVDGPHYAKVSDSGDWV----- 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 S ++ D + +V++ G+PH + V+D Sbjct: 130 ------------SLQMINVDVIKKDGED-------YVLNTGSPHYVRLVDDLQNVDMYEE 170 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS----G 237 + ++G+N++ + L +RT+ERGV T ACG+ A +A Sbjct: 171 GRKVRYNDTYKAQGINVNFVEDEG-DHLFVRTYERGVEDETYACGTGVTAVALAMAKYQN 229 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDIK 282 + + V V LGG L I + + +F+ G AKK +EG+LD+ Sbjct: 230 RTGEISTPVKV--LGGNLNIRFKYDGEKYEDIFLEGPAKKVFEGELDLA 276 >gi|331003256|ref|ZP_08326763.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412909|gb|EGG92289.1| diaminopimelate epimerase [Lachnospiraceae oral taxon 107 str. F0167] Length = 270 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 15/281 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ GN + +D N AI D ++LI A D + Sbjct: 1 MKFIKMQAAGNDYVYVDCFKEKIENPGEIAIKVSDRHFGVGSDGLILICPSDIA--DVKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DGS CGNG RCV ++ KS F G + I ++ + + Sbjct: 59 DMYNADGSRGLMCGNGSRCVAKYAYDHGYVKSKNFTMETGAGI------KYIEIEEKDGV 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLAS 182 + + + ++F F + + V +GNPHA+++VE D+L +L + Sbjct: 113 AHYINVNMGKAF---ITSEFPEKISINGEEKEFIGVDVGNPHAVYYVETLDELKGMNLEA 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G +H F + VN V +++ +R WERG G T ACG+ ACA+ A+ Sbjct: 170 VGEYYERHKRFPDKVNSEFIYVEDEKNIHMRVWERGSGETLACGTGACAAAFATMKKGLC 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V V +LGG L I N+ ++M G A+ + G+++ ++ Sbjct: 230 ENMVRVHLLGGDLDISLV-NDEIYMRGRAEYVFFGEINFQS 269 >gi|322369889|ref|ZP_08044451.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253] gi|320550225|gb|EFW91877.1| diaminopimelate epimerase [Haladaptatus paucihalophilus DX253] Length = 278 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 16/280 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLI-HDFQDASVDAFI 64 + F K G GN ++++ C + + A D D ++ + + + + Sbjct: 3 LSFEKYHGTGNDFVIVNPDACVPHRSRFARRVCDRTDGIGADGVLFLALEPEFRPPRVIM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 ++ DGS + CGNG RC + R +T+ G AK + G +++MG P Sbjct: 63 TLVQPDGSTAEMCGNGARCAAVWAAERANADEVMIDTLAGTRHAKIHDGG-ATIEMGAPE 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+A ++ + + V+ G PHA+ FV+ D+ +L Sbjct: 122 FGPNDVPVAGDEPLIE---------TRVGDYDVTAVNTGVPHAVAFVD-DVTAVNLERDA 171 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243 + +F EG N++ A D RT+ERGV T +CG+ A A A+ L T+ Sbjct: 172 PPIRHADVFPEGANVTFASPCD-GGFDQRTFERGVEGETQSCGTGAVAIAAAARRLGLTD 230 Query: 244 -RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 VSV GG L + D+ + +TG ++E+ G L + Sbjct: 231 GENVSVSPPGGDLEVTV-DDRNATLTGPVEREFGGDLRVS 269 >gi|88803641|ref|ZP_01119165.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P] gi|88780374|gb|EAR11555.1| Diaminopimelate epimerase [Polaribacter irgensii 23-P] Length = 256 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 44/287 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDDNTHFDQIMLIHDFQDASVD 61 ++F K +G GN ++ID R N D I D ++LI + D ++D Sbjct: 3 LNFYKYQGCGNDFVMIDNRSQTFN--KDTINTISKLCDRHFGIGADGVILIEN--DLALD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDM 120 + N DGS+ CGNG RC V F K+ T F G +K + Sbjct: 59 FKMVYYNPDGSQT-FCGNGGRCAVSFAHFLGIIKNETNFTAFDGTHFSKIKNN------- 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 I + L ++ G PH + V DL ++D+ Sbjct: 111 -------------------IVSLKMIDVSDIQILEQAVFLNTGTPHHVQVV-TDLSNFDV 150 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + S G N++ + + +RT+E+GV T ACG+ A +A Sbjct: 151 FREGEKIRYT-YKSPGSNVNFVEQINDTTFQVRTYEKGVENETLACGTGVTAVAIAMHKT 209 Query: 240 HKTNRA-VSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 KTN +++ + GG L + + + ++F+ G A ++GK++I Sbjct: 210 KKTNSTSITLPVAGGILEVSFTEKEGVYENIFLRGAASFVYQGKIEI 256 >gi|290956961|ref|YP_003488143.1| diaminopimelate epimerase [Streptomyces scabiei 87.22] gi|260646487|emb|CBG69584.1| diaminopimelate epimerase [Streptomyces scabiei 87.22] Length = 289 Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 121/309 (39%), Gaps = 39/309 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M + + F K G N +++ +++ A+ AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPENAIDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK 109 A + F+ N DGS + CGNG+R R+ + T T G+ Sbjct: 60 EARELAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLLHAGHVAEGDLTVATRGGVKRVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++DG ++V MG L + ++ V+MGNPHA+ Sbjct: 120 IDKDGDVTVGMGGARLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL + + +GVN+ + +R ERG G T +CG+ A Sbjct: 164 FVD-DLAQAGDLLSPPPFSPASAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + A+ +V + GG L+I + + MTG A EG++D Sbjct: 223 CAVAVAAARRDGVDPAITGTPATYTVDVPGGTLVITERADGEIEMTGPAVIVAEGEID-- 280 Query: 283 TGKWIKKNE 291 KW++ Sbjct: 281 -AKWLETAA 288 >gi|301057678|ref|ZP_07198753.1| diaminopimelate epimerase [delta proteobacterium NaphS2] gi|300448224|gb|EFK11914.1| diaminopimelate epimerase [delta proteobacterium NaphS2] Length = 276 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 110/288 (38%), Gaps = 32/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 V+F KM G GN +VID R ++ ++ D ++ + D + D Sbjct: 4 VEFWKMSGTGNDFIVIDNRKGLVTAQDMAHLVARTCRRRESVGADGVIFVTDSEK--YDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 R N DG EV+ CGNG RCV RF + TFET+ G + A+ + V + Sbjct: 62 GWRFFNADGGEVEMCGNGGRCVSRFAFLKGIAGSRMTFETLVGPISAEVKGR-MVKVLLP 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + L + D V+ G PH + V D H Sbjct: 121 APRNEATDVDLPFLAGWLSCD----------------FVNTGVPHVVVQVSDLEKHPVFD 164 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH 240 L EG N + + L +RT+ERGV T ACG+ A AS + + Sbjct: 165 QGRELRYHEKFSPEGTNANFMTIVGPHELAVRTYERGVEGETLACGTGAVASALMAFRRG 224 Query: 241 KTNRAVSVKMLGGGLLI--------EWHDNNHVFMTGEAKKEWEGKLD 280 + V+V GG LI + + +++ G + L+ Sbjct: 225 SVSSPVTVHTQGGEELIIHLSSEGEDVRTGDRIWLQGNTSVIYTATLN 272 >gi|311745093|ref|ZP_07718878.1| diaminopimelate epimerase [Algoriphagus sp. PR1] gi|126577607|gb|EAZ81827.1| diaminopimelate epimerase [Algoriphagus sp. PR1] Length = 263 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 99/285 (34%), Gaps = 39/285 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + + A+ D ++LI + +D D Sbjct: 9 ITFYKYQGTGNDFVMIDDRKENFDAGDLALVSKICDRKFGVGADGLILIRNHKD--YDFE 66 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFL-TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS+ CGNG RC V F + F I G A Sbjct: 67 MIYFNADGSQS-MCGNGARCAVAFSAFLEIISDKTQFLAIDGPHEAIIQDG--------- 116 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + V+ G+PH + V + Sbjct: 117 -----------------LVQLLMGDVEKIEEKAEDYFVNTGSPHHVRMVSKISDYPVFDE 159 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 ++ G N++ S E + +RT+ERGV T +CG+ A + + Sbjct: 160 GKSVRYDEMYAPAGTNVNFVEPISKEEIYVRTYERGVENETLSCGTGVTACALV-YAKDQ 218 Query: 242 TNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLDI 281 + + LGG L + + +++ G A++ + GK+ I Sbjct: 219 DKAEIKINTLGGKLSVRFTAGQTGGFQDIWLIGPAEQVFTGKIKI 263 >gi|302035973|ref|YP_003796295.1| diaminopimelate epimerase [Candidatus Nitrospira defluvii] gi|300604037|emb|CBK40369.1| Diaminopimelate epimerase [Candidatus Nitrospira defluvii] Length = 289 Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats. Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 16/282 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F + G+GN +V+D +T I + D I+ + + A D +RI Sbjct: 5 FFRGHGLGNDYVVMDPTELTFTLTPGKIRGICDRHWGLGSDGILALVPSKKA--DFGLRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS-----ISVD 119 N DGSE + GNG+R R+L + + K+++FT ET G++ + D +V+ Sbjct: 63 YNPDGSEAEKSGNGLRIFARYLHATGKTKKRAFTVETKGGLVSIALHIDRHGDAAAATVE 122 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYH 177 MG +P S D++ + F VS+GNPH + F + + Sbjct: 123 MGRATFQPSALPCTLSVDELIQQPIEAAGRALQFTG----VSVGNPHCVIFKQAGETWTR 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 +L + G +L HP+F + N+ +A T + + + WERG G T A GS++CA+ A+ Sbjct: 179 EELLALGPVLENHPLFPKRTNVQLAVPTGPKEIFILIWERGAGETQASGSSSCAAASAAV 238 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L V+VKM GG L IE + + M G + G L Sbjct: 239 RLGLVKGPVTVKMPGGTLNIEVARDFSLTMKGPVAEVARGAL 280 >gi|163815601|ref|ZP_02206974.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759] gi|158449238|gb|EDP26233.1| hypothetical protein COPEUT_01776 [Coprococcus eutactus ATCC 27759] Length = 289 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 81/290 (27%), Positives = 135/290 (46%), Gaps = 12/290 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ + LS D ++LI A D + Sbjct: 1 MHFTKMEGLGNDYVYVNCFEEKVDDPQRLARLLSDRHRGVGSDGLILIGPSDKA--DFSM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS + CGNG+RCV +++ + + + ET+ GI + + Sbjct: 59 AVYNSDGSIAEMCGNGIRCVCKYVYDNHMTESRRISVETLAGIKYLRCISGDRRQSIVTV 118 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFVE-----DDLY 176 + ++ + D ++ ++ F+ VSMGNPHA+ +++ Sbjct: 119 DMGAPEIGRDRMTVDAALTEKMLEERIDVSGKMISFIRVSMGNPHAVVWLDGLDVACVTD 178 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 S G L+ KH F G N+ RV + + +R WERG G T ACG+ ACA+ A Sbjct: 179 GEKTMSIGALMEKHDAFPSGTNVEFVRVIDRDLIQIRVWERGSGETMACGTGACAAAAAC 238 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDIKTGK 285 + TN V+V++ GG L IE+ N + MTG A+K ++G++DI + + Sbjct: 239 MAKNYTNNVVTVQLGGGELHIEYDRNKKTINMTGPARKVFDGQVDIFSQE 288 >gi|148547967|ref|YP_001268069.1| diaminopimelate epimerase [Pseudomonas putida F1] gi|148512025|gb|ABQ78885.1| diaminopimelate epimerase [Pseudomonas putida F1] Length = 268 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 17/270 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F K GN LV + + AI+ + D I++ + + Sbjct: 1 MQFVKYHAAGNDYLVYHD-KTPFDCSMLAISVICDRHRGLGSDGILI--PVIEPGKMLSV 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 +I+N DGSE + GNG+R + R+L + FE + + + + Sbjct: 58 QILNTDGSEAEKSGNGLRILCRYLWDQRIVSHEPFELLTKGGKVR-----------CQVL 106 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D + I +A + H V+ + L +VSMGNPH + FV+ G Sbjct: 107 DDGRRISIAMGMATFPENERHSMEVDGMRLHL-NLVSMGNPHCVVFVDQTTE-ALARKLG 164 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + + +F N+ V +L ++ WERGVG T + G+++CA+ S L + Sbjct: 165 PTIEQLSLFPNRTNVQFVNVVDRRNLMVQIWERGVGYTLSSGTSSCAAAAVSRRLGFVDD 224 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 V+V M GG + IE ++NHV M G K Sbjct: 225 HVTVHMPGGQITIELDEDNHVLMKGPVCKI 254 >gi|312878936|ref|ZP_07738736.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] gi|310782227|gb|EFQ22625.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] Length = 277 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 114/286 (39%), Gaps = 27/286 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G GN +++D R ++ S + A + D ++LI + Q+ + Sbjct: 4 LHFWKVHGNGNDFVILDDRTGEVSRGRDLPSLTVRACARKTGLGADGVLLIQEGQEGDL- 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC R + F T G + A+ + Sbjct: 63 FRMRLFNADGSEGEMCGNGARCFARMLHRLGLAGTEPVFLTGLGPVTARVEGER------ 116 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178 L+ I L ++ + + + +G PHA+ + + D+ Sbjct: 117 --VRLEMGEIDLEEAWFDEPLE-----DRDLPPGTRWSFLHVGVPHAVLWADSWQDVSEG 169 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 L G HP +G N++ A +L +RT+ERGV T +CG+ +CA V + Sbjct: 170 TLRWIGKKYRHHPRCPQGANVNFAAPE-EGALRVRTYERGVEDFTDSCGTGSCACGVVAV 228 Query: 238 CLHKTNRAVSVKMLGGGLLI--EWHDNNHVF-MTGEAKKEWEGKLD 280 V V+ GG + + V + G A EG + Sbjct: 229 LRGG-PSPVEVRTPGGIQQVGCRIRGDKAVLSLAGAAVFVAEGVWE 273 >gi|283853945|ref|ZP_06371149.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B] gi|283570666|gb|EFC18722.1| diaminopimelate epimerase [Desulfovibrio sp. FW1012B] Length = 284 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 66/285 (23%), Positives = 106/285 (37%), Gaps = 21/285 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61 V F KM+G GN + +D R + D + A+ D ++ + + + Sbjct: 11 VPFFKMQGCGNDFVCVDNRELGYDPADMPDMVVAVCRRAFGVGADGMIFLDQAPAGSGLA 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGNG RC R + + S V + Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGLAPASHVFGTDAGPIEAVVDPDSSQVTVR 130 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + D K + + + + ++ V+ G PHA+ VE DL ++ Sbjct: 131 --LTDPKDLRMDLTVEIEHQELPLH------------FVNTGVPHAVAVVE-DLEAVEVW 175 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + H F G N++ V L LRT+ERGV T ACG+ A AS V + L Sbjct: 176 KLGRAVRFHEFFKPAGTNVNFVAVEGPGRLSLRTYERGVEDETYACGTGAVASAVVARKL 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 T + GG L + ++ G A+ + G ++ Sbjct: 236 GLTGEETVITTTGGEELGVILKDGKTYLRGAAELVFTGAFFPQSL 280 >gi|256423679|ref|YP_003124332.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588] gi|256038587|gb|ACU62131.1| diaminopimelate epimerase [Chitinophaga pinensis DSM 2588] Length = 261 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 39/287 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R N +T + ++ L D +ML++ + D Sbjct: 4 IHFYKYQGTGNDFVIMDNRNGEYNFLTEEQVHFLCDRRFGIGADGLMLLN--KQEGYDFG 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 ++ N DG E CGNG RC+V F + + +F + G A D +++ M + Sbjct: 62 MKYYNADGRESSMCGNGGRCLVAFARKMGLTDEKLSFLAVDGPHEATLKGDDWVNLKMQD 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 ++ G+PH + FV D+ D+ + Sbjct: 122 VS-------------------------GVEINSLHSYLNTGSPHYVKFV-ADVKAVDVYN 155 Query: 183 FGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + + F EG N++ + +RT+ERGV T +CG+ A+ + + Sbjct: 156 EGKQIRYNDRFAKEGTNVNFVQSLDKGIF-VRTYERGVEDETYSCGTGVTAAALMTAGAE 214 Query: 241 KTNRAVSVKMLGGGLLIEW-----HDNNHVFMTGEAKKEWEGKLDIK 282 V V+ LGG L + + N++++ G A +EG + + Sbjct: 215 TKEYIVPVQTLGGKLEVRFTRIGEKAYNNIWLCGPATLVFEGNITLP 261 >gi|253582412|ref|ZP_04859635.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725] gi|251835951|gb|EES64489.1| diaminopimelate epimerase [Fusobacterium varium ATCC 27725] Length = 278 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 125/283 (44%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+ GN ++++ N A D +M A D + Sbjct: 1 MKFSKMQAAGNDFILVNGMIEKSLNWNETAKKVCDRHFGIGADGLMFCESSSKA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKEN-----RDGSIS 117 N DGS + CGNG+RC +F+ K F ET GI K + + Sbjct: 59 YYYNSDGSRGEMCGNGIRCFAKFIYDNGIVKKEKFSVETDAGIKYIKLDIGIEGNIEYLE 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDMG+ K IP + + + I +F V MG PH FVE + Sbjct: 119 VDMGKIDFRGKEIPCTIQKENILEEEIFIENKKIVFSS----VLMGVPHTTIFVE-NFDE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G+L+ K+ +F E N++ A++ + +++ ++TWERG G T CG+ CA+ + Sbjct: 174 YDVNEIGSLMEKNDIFPEKTNVNFAKIITNDTIMIKTWERGAGRTLGCGTGCCATAALAY 233 Query: 238 CLHKTNRAVSVKM-LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K + + GG L IE +N + M+G+A+ G+ Sbjct: 234 KLGKIKKNKIKLLAEGGELFIEIGENYEITMSGKAETICHGEF 276 >gi|313127022|ref|YP_004037292.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551] gi|312293387|gb|ADQ67847.1| diaminopimelate epimerase [Halogeometricum borinquense DSM 11551] Length = 289 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 23/284 (8%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--------HFDQIMLI-HDFQDASV 60 K G GN +V+D + + A + + D ++ + + + + Sbjct: 12 KYHGTGNDFIVVDADESVPDRPAFASAHCNRESGIDGDGSERRGADGVLFLALEGRYSPP 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + ++ DGS CGNG RC + R +T G A ++++M Sbjct: 72 RVVMTLVQPDGSVAAMCGNGARCAAAWAAERTGSDELMIDTPAGTRHAVVED-DRVTIEM 130 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + +PLA R + ++ G PHAI FV+ D+ L Sbjct: 131 GAPSFRPRDVPLA---------REEELVEEEIEGLTVTALNTGVPHAIAFVD-DVDAVAL 180 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239 S + +F +G N+++A S RT+ERGV T +CG+ A A V A+ + Sbjct: 181 ESVAPAVRHADVFPDGANVTVASQNDDGSFRQRTFERGVEGETQSCGTGAVAVVAAAKRV 240 Query: 240 HKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+V GG L I D+ +TG A+ E+E +LD+ Sbjct: 241 GLVDGDDPVTVSPPGGELEITVPDDGPATLTGPAEHEFETELDV 284 >gi|317125288|ref|YP_004099400.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043] gi|315589376|gb|ADU48673.1| diaminopimelate epimerase [Intrasporangium calvum DSM 43043] Length = 424 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 24/294 (8%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + M F K G N +++ +T + L+ D ++ I + A+ D Sbjct: 140 TVMTRFTKGHGTENDFVLVPDPEGTLELTPAQVQRLADRRAGIGGDGVIRIVPTRHATED 199 Query: 62 ----------AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAK 109 F+ N DGS + CGNG R FL TF T GI + Sbjct: 200 SVRAQAAQAEWFMDYRNADGSLAEMCGNGTRVFASFLVREGMVHGDTFDIATRAGIKHVR 259 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +G D + + D F +GNPHA+ Sbjct: 260 VVPEGFAVDLGPWRYGD------EQGARRDGFDIMVRPRHGKPVPALTF--DLGNPHAVV 311 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + D + +L P G+N+ + + +R ERGVG T +CG+ A Sbjct: 312 MLPDGIELENLD-LTAPPDVQPAQPNGINVEFVKAVGPAHIAMRVHERGVGETRSCGTGA 370 Query: 230 CASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ +A+ V + GG L + N V + G A+ +G + + Sbjct: 371 AAAALATRFWSGVEDLAPWRVDVPGGTLTVTPLAGNRVELAGPAELVADGDVSL 424 >gi|218960621|ref|YP_001740396.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas acidaminovorans] gi|167729278|emb|CAO80189.1| diaminopimelate epimerase (DAP epimerase) [Candidatus Cloacamonas acidaminovorans] Length = 262 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 30/282 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRG------CHDNITSDAINALSTDDNTHFDQIMLIHDFQDA 58 ++ F KM GN +++D + +S A D ++L+ + Sbjct: 2 LIPFLKMHAQGNDFVILDYFAPESFALAKLDFSSVAEELCKPHFGIGADGLVLLMP--NE 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 S DA + I N DGS + CG+ +RCV L + +K F +T G+ N D +I+V Sbjct: 60 SCDAQMFIHNADGSTAEMCGSALRCVTWILHQKTGKKEFRVQTEAGLKTCYVNEDNTITV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 ++G P + L ++ MD +V +GN H I +V + L Sbjct: 120 NLGMPSM------LKSAYQVMD--------------FTGDLVEIGNQHFIVWV-NSLKDD 158 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +G+ + H F++ VN+ A + + ++ ++ WE+G G T ACG+ A A+V + Sbjct: 159 PHLQYGSAIEHHKGFAQTVNVHFAVLLNRTAVAIKIWEKGCGATLACGTGASATVFSGIA 218 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 N V V M GG + I N ++ ++GE + ++G + Sbjct: 219 KGLLNNEVEVLMPGGIVKINASANGYL-LSGEVCQSFQGVYN 259 >gi|327398434|ref|YP_004339303.1| Diaminopimelate epimerase [Hippea maritima DSM 10411] gi|327181063|gb|AEA33244.1| Diaminopimelate epimerase [Hippea maritima DSM 10411] Length = 277 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 33/287 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 + F KM G GN ++I+ R + + + + D ++LI +D Sbjct: 4 IPFFKMNGSGNDFIIINNRRNIVEEMVDIPIHEFVRRVCERKLSVGADGLILIE--KDNE 61 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISV 118 D R N DGSE + CGNG RC RF S F T+ G++ A+ ++ V Sbjct: 62 YDFRWRFFNSDGSEAEMCGNGSRCAARFAYLNNIAPLSMKFLTLAGVIEAQITGLNTVRV 121 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +P + I L ++ G PHA++FV Sbjct: 122 QLTQPKDYKENIEL------------------DGVDMPLSFINTGVPHAVYFVSSVDVVD 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 EG N++ V + +L +RT+ERGV T ACG+ A AS + + Sbjct: 164 VKTIGEKTRYHEYFAPEGTNVNFVEVVNSHTLRIRTYERGVEDETLACGTGATASALIAI 223 Query: 238 CLHKTNRAVSVKMLGGG-LLIE-WHDNNH---VFMTGEAKKEWEGKL 279 K V V G L I + +N+ V++ G+A + G + Sbjct: 224 LKGKCETPVEVITKSGNRLKIYAYIENSEVKRVYLEGDALLTYIGTM 270 >gi|295109033|emb|CBL22986.1| diaminopimelate epimerase [Ruminococcus obeum A2-162] Length = 282 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 15/278 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 +M+ K +G+GN LV+D + I L D ++ + + Sbjct: 6 TMI---KYQGLGNDYLVLDPNKNRVQLQGKKIALLCQRGFGLGADGVLY--GPVEINGKM 60 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISV 118 + I N DGSE GNG+R ++L K F + V Sbjct: 61 GVHIYNSDGSEAAISGNGVRIFAKYLIDHEYVKEQKFSIETLSGPVEVECLNSRATEFRV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 +MG+ + IP+ ++ + F ++ +++GNPH I F++ ++ Sbjct: 121 NMGKASFISREIPVTGEVREVINETFTFNKKDYK----ATCLTVGNPHCIIFMD-EVSPE 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 G + F E +NL I R +LD+ WERG G T A G+ +CA+ VA+ Sbjct: 176 IAKDLGPYVENADEFPERMNLQICRRIDSGNLDIEIWERGSGYTKASGTGSCAAAVAAYR 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 L T ++V GG + I+ D++ ++MTG + Sbjct: 236 LGLTESRINVNQPGGIIQIDIKDDDTIYMTGSVGYVAD 273 >gi|294101242|ref|YP_003553100.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261] gi|293616222|gb|ADE56376.1| diaminopimelate epimerase [Aminobacterium colombiense DSM 12261] Length = 281 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 127/287 (44%), Gaps = 28/287 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M++F K++G GN +VID R +++ A + + D ++++ + + Sbjct: 1 MLEFTKIQGNGNDFIVIDNREGSMTSPDLSRLAASICERRQSVGADGLLVVEMSEREN-- 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R+ N DGSE + CGNG RC+ R+ + I G ++ E G I + Sbjct: 59 FTMRLFNNDGSEGEMCGNGARCIARYAWEKK---------IAGEKMSFETLAGPIHGVVT 109 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED--DLYHYD 179 P + L + + + + +G PH + FV++ D H Sbjct: 110 APF-----VELDMGETNLSQGFWGQSLKVEGETFPFVYLVVGVPHCVLFVDNLEDFSHDS 164 Query: 180 LASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 L G + F +G N++ + + +L + T+ERGV LT +CG+ + AS +A+ Sbjct: 165 LRDIGRTVRYDTHRFPKGTNVNFVQRSGERTLKVVTYERGVEDLTLSCGTGSTASAIAAS 224 Query: 238 CLHKTNRAVSVKMLGGG--LLIEWHDNNHV---FMTGEAKKEWEGKL 279 + + + V+ GG + + +++ + ++TG+ EG+L Sbjct: 225 IVWEMAAPIQVQNPGGDNWVTVSFNETRSICKTYLTGKTVMIAEGRL 271 >gi|29829015|ref|NP_823649.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680] gi|29606121|dbj|BAC70184.1| putative diaminopimelate epimerase [Streptomyces avermitilis MA-4680] Length = 289 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 39/309 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M + + F K G N +++ ++ A+ AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTENDFVIVPDPENAIDLPPAAVAALCDRRAGIGGDGVLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAK 109 A + F+ N DGS + CGNG+R R+L T G+ Sbjct: 60 EAREMAAEAEWFMDYRNGDGSVAEMCGNGVRVFARYLQRAGHVTEGDLAVATRGGVKTVH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 +DG ++V MG+ L + ++ V+MGNPHA+ Sbjct: 120 IAKDGDVTVGMGKAFLPEGDVTVSV----------------GERSWPARNVNMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H + + +GVN+ + + +R ERG G T +CG+ A Sbjct: 164 FVD-DLAHAGDLLAPPPFSPPTAYPDGVNVEFVIDRAPGHVAMRVHERGSGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAVS-------VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + AV+ V + GG L+I + + MTG A EG++D Sbjct: 223 CAVAVAAARRDGADPAVTGTPATYTVDLPGGTLVITERPDGEIEMTGPAVIVAEGEID-- 280 Query: 283 TGKWIKKNE 291 +W++ Sbjct: 281 -AEWLENAA 288 >gi|167752322|ref|ZP_02424449.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216] gi|167660563|gb|EDS04693.1| hypothetical protein ALIPUT_00566 [Alistipes putredinis DSM 17216] Length = 270 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 115/284 (40%), Gaps = 31/284 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + FAK EG GN +++D+R +++ D +M + + D + Sbjct: 3 MRFAKYEGAGNDFILLDLRNGGATPQSAEIARLCDRHFGIGADGLMTLAASAVSGCDCSM 62 Query: 65 RIINCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 R N DGS + CGNG RC + F++ GI A+ R + Sbjct: 63 RYYNADGSPGEMCGNGGRCFALFAHHLGIGGDIKRFDSTDGIHEARMLRIDGLRS----- 117 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 +D +R G + + G PH + F + DL D+ Sbjct: 118 ---------TVELGMIDVERIDRGD-------GYWFLDTGVPHYVEFTD-DLEAVDVIGR 160 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 G + F++G N++ +V + +RT+ERGV T ACG+ + A+ + + + Sbjct: 161 GRRIRYDKRFAKGTNVNFVKVVGPGHIAVRTYERGVEDETLACGTGSTAAALVTHLAAQP 220 Query: 243 NRAV-SVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEGKLD 280 + + + GG L I + + + ++GEA+K +EG D Sbjct: 221 SVTAFRIDVRGGRLGIAFDEPKPGIYTRIRLSGEARKVFEGSYD 264 >gi|196001093|ref|XP_002110414.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens] gi|190586365|gb|EDV26418.1| hypothetical protein TRIADDRAFT_54386 [Trichoplax adhaerens] Length = 350 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 80/278 (28%), Positives = 125/278 (44%), Gaps = 20/278 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD---AINALSTDD-NTHFDQIMLIHDFQDASVD 61 V F KM G+GN ++++ GCH +SD +S + DQ ++ D Sbjct: 5 VPFVKMHGLGNDFVIVN--GCHMPKSSDIHSFAKEISDRELGVGCDQFIIYRQDSDK--- 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS ++CGN RC+ R L K+ + ++ K +I VDMG Sbjct: 60 INMTIYNQDGSGAKACGNASRCLTRLLFDHTGAKNIKLDVDGRVVSGKYIDKNTIKVDMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + +P + +R+ I P + V + NPH + F + L D+ Sbjct: 120 PPSFESSWMPDSTDL-CSLAERYMIEPKEMI------CVDVANPHLVIFSK--LSKKDMG 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 GN K +F +GVN++ AR+ ++L WERG G T ACGS A A+ A+ L Sbjct: 171 MIGNDFQKCELFPDGVNVNFARIED-NKINLTVWERGTGFTYACGSGAIATFAAANKLSF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + G L ++ N+ V M+G A + G+L Sbjct: 230 FGDEAEIVFKLGSLKMQ-KQNDSVLMSGPASYVFTGEL 266 >gi|297570156|ref|YP_003691500.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2] gi|296926071|gb|ADH86881.1| diaminopimelate epimerase [Desulfurivibrio alkaliphilus AHT2] Length = 281 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 74/288 (25%), Positives = 118/288 (40%), Gaps = 33/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA---INALSTD-DNTHFDQIMLIHDFQDASVD 61 + F KM G GN +++D R T+ A A+ + D ++LI + + D Sbjct: 5 ISFTKMSGAGNDFILMDHRRPLFADTAAAQKFARAVCRRKFSVGADGLILIEESK--EAD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG RC RF ++ F T+ GI+ A+ + + M Sbjct: 63 FRWQFFNADGSVAEMCGNGARCAARFAYERKIAPARMHFATLAGIIEAEITGTN-VGLTM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + +V+ G PHA+ V+ D+ + Sbjct: 122 TPPE---------------NLQLDLRLDDPAGGEQTVHLVNTGVPHAVLLVD-DIDVVPV 165 Query: 181 ASFGNLLAKHPMF-SEGVNLSIA--RVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 +G HP F G N++ + + L +RT+ERGV T ACG+ A A+ + + Sbjct: 166 KEWGRHFRFHPRFAPAGANVNFVGRETATSDLLRVRTYERGVEDETLACGTGAVAAALVA 225 Query: 237 GCLHKTNRAVSVKMLG-GGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 CL T V G L+I +H V + G A +EG+L Sbjct: 226 SCLDLTAAPTRVITSGRDELVIHYHRQGRDFTGVKLEGPADFIYEGQL 273 >gi|295836154|ref|ZP_06823087.1| diaminopimelate epimerase [Streptomyces sp. SPB74] gi|197695250|gb|EDY42183.1| diaminopimelate epimerase [Streptomyces sp. SPB74] Length = 295 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 109/308 (35%), Gaps = 29/308 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M ++ + F K G N ++I ++ D + L D ++ + Sbjct: 1 MSTA-IGFLKGHGTQNDFVIIPDPENTLDLGPDTVAVLCDRRAGLGGDGLLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + VA Sbjct: 60 EGRAYADDAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGHVDAGELA------VATRA 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + E I + + R V MGNPHA+ FV Sbjct: 114 GIKRAHLANDEAPGVPGEITV--EMGVARLPEGEVEVRVGSGTRPATHVDMGNPHAVTFV 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 DL + + +GVN+ + +L +R ERG G T +CG+ ACA Sbjct: 172 -TDLAEAGELREAPEVLPASAYPQGVNVEFVVERAPGALAMRVHERGSGETRSCGTGACA 230 Query: 232 SVVASGCLH-----KTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ +T R +V + GG L I + V MTG A EG +D G Sbjct: 231 VAVAAARRDGLDPARTGRPATYTVDLPGGRLTITERADGVVEMTGPAILVAEGTID---G 287 Query: 285 KWIKKNED 292 W+ + Sbjct: 288 DWLAASAH 295 >gi|297584692|ref|YP_003700472.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10] gi|297143149|gb|ADH99906.1| diaminopimelate epimerase [Bacillus selenitireducens MLS10] Length = 324 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 131/306 (42%), Gaps = 20/306 (6%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAIN----ALSTDDN-THFDQIMLIHDFQDASVDAF 63 K G GN ++ID D T + LS D ++ I + + DA Sbjct: 6 IKCHGSGNDFIIIDEMDQPDRFTEEERRSLSILLSDRKGKIGSDGLLFIQNSEH--CDAR 63 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +R+ N DG+E + CGNG+RCV R+ ++ +K ET++ L ++ D + E Sbjct: 64 MRMFNSDGTEAEMCGNGLRCVARYAIEKLGKKHLVIETMKADLPVRQTEDLYPDMKTYEV 123 Query: 124 ILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 ++ L P++ + + +S+ NPH + V D + + Sbjct: 124 AIEPVSLDPVSLPLKTVHAPHIDRPIPALSDNLSFTALSVPNPHVVTKVNDVPHRDAESI 183 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL--H 240 +F GVN+S + + + ++T+ERGVGLT ACG+A AS + S + Sbjct: 184 GRLANDLSDIFPNGVNVSFMKPLTKNQIFVQTYERGVGLTNACGTAMSASSLVSVLNAGN 243 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLD-------IKTGKWIKKN 290 N ++V GG + H + V+ + G A E+ L+ I+ + + Sbjct: 244 DLNEVITVFNPGGMVQTVVHQEDEVYTIKLRGNATYEYSSDLEADLDHGYIEQLRVERYT 303 Query: 291 EDDEAY 296 +++E Y Sbjct: 304 DEEELY 309 >gi|298528156|ref|ZP_07015560.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans ASO3-1] gi|298511808|gb|EFI35710.1| diaminopimelate epimerase [Desulfonatronospira thiodismutans ASO3-1] Length = 284 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 118/290 (40%), Gaps = 24/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQD 57 + S+M F KM+G GN ++ D + ++ A D ++ + + + Sbjct: 4 LSSNMQQFFKMQGSGNDFILWDNTSLNLPGELMSRWAETLCPRGFGIGADGMIFLDNPRT 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI 116 D N DGS + CGNG RC R + F T G + A+ G + Sbjct: 64 QGHDFDWHFFNADGSRAEMCGNGSRCAARLAHRLGLAGREQVFGTDAGAVRAQVKDKGKV 123 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V + + I N V+ G PHA+ + D++ Sbjct: 124 RVQLTPAE---------------NLQLHSILNFEESSPVNLHSVNTGVPHAVIICD-DVH 167 Query: 177 HYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 +++ G ++ HP G N++ +V + LRT+ERGV T ACG+ A ASVV Sbjct: 168 KVNVSGLGRMVRMHPDFAPAGTNVNFIQVKDRGHIYLRTYERGVEDETFACGTGAAASVV 227 Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + L +V V G L I+ + VF+TG+A ++G L + T Sbjct: 228 VASALGLCANSVQVVTSGKEHLNIDLQEQG-VFLTGKADFIYQGMLFLDT 276 >gi|94266454|ref|ZP_01290147.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] gi|93452932|gb|EAT03437.1| Diaminopimelate epimerase [delta proteobacterium MLMS-1] Length = 283 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 108/285 (37%), Gaps = 28/285 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + F KM G GN ++ID R T + A + D ++LI + + D Sbjct: 5 ITFTKMSGAGNDFILIDHRRPLLVDTAAAQAFARAVCERKFSVGADGLILIENSE--EAD 62 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS CGNG RC RF G + + G+ + Sbjct: 63 FSWQFFNADGSLAGMCGNGARCAARFAYESGIVTRERLCFATGAGLIEAEISGTAVLLTM 122 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P +L H+ L V G PHA+ F + ++ + Sbjct: 123 TPPGQCRL-------------NLHLAGPTGEEL-TLHTVDTGVPHAVLFCD-EIATVPVK 167 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 +G+ HP F G N++ + L +RT+ERGV T ACG+ A A+ + + L Sbjct: 168 EWGSYFRNHPRFAPAGCNVNFVGQEAPGRLRVRTYERGVEDETLACGTGAVAAALVASRL 227 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEGKL 279 + +V G +L+ H + V + G A ++G L Sbjct: 228 GRAVSPTTVVTSGREVLVIHHRDQDGQFQDVRLEGPADFIYQGSL 272 >gi|269123763|ref|YP_003306340.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112] gi|268315089|gb|ACZ01463.1| diaminopimelate epimerase [Streptobacillus moniliformis DSM 12112] Length = 260 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 115/276 (41%), Gaps = 17/276 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F K G+GN ++ D + + + D ++++ + + + ++ Sbjct: 1 MEFEKYSGLGNDFII----TEKDLTVEEIVKYCKRRKSIGADGVIIL---KKKNENFYMH 53 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS CGNG+RC +L IL+ + I + E Sbjct: 54 FYNADGSLAAMCGNGIRCYAHYLY-----NHNLVSKDDEILIDTLSGIKKIRIINTEKDN 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + + + + + ++ + IF +++L + +G Sbjct: 109 FLVSVDMNAAINTTEIKTIEAIDRTFKYIYTFT---GTDHVVIFVDKEELNEDFVTKYGK 165 Query: 186 LLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + ++ +F +G N++ V + E +D+ T+ERG GLT ACG+ A A S L KT Sbjct: 166 NIEQNKEVFPKGTNVNFVYVKNREEVDVITFERGAGLTLACGTGASAVGYVSNMLGKTGN 225 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V V +LGG L IE + +FM G ++ ++G + Sbjct: 226 KVKVNLLGGSLEIEIK-DGTIFMNGISEMIYKGSVK 260 >gi|206603184|gb|EDZ39664.1| Diaminopimelate epimerase [Leptospirillum sp. Group II '5-way CG'] Length = 290 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 82/292 (28%), Positives = 128/292 (43%), Gaps = 17/292 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 DF K G+GN +V M +T + I + D I+L+ + +R Sbjct: 6 DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60 Query: 66 IINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSISV 118 I N DGSE + GNG+R F + F ET+ G++ A+ NR + V Sbjct: 61 IFNPDGSEAEKSGNGLRIFAKFLFEYGYATDRHFRIETLGGMVTAEVYPDASNRVDRVKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ +D + + LA + + P +S+GNPH +FF E +L Sbjct: 121 DMGKATVDPRSVGLANPDKPFVEELLELAP---DLRIKGTAISVGNPHFVFFRE-ELDEK 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +G + HP+F + +N + RVT +++R WERG G T A GS++CA+ S Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 L K V V+M GG L I+ + M G + G + + Sbjct: 237 LGKVKSPVHVRMPGGMLAIDVSPEQEIRMEGPVSEVMSGDFSPDLLALLGSS 288 >gi|78356841|ref|YP_388290.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219246|gb|ABB38595.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 283 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 111/286 (38%), Gaps = 23/286 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN--ITSDAINALSTD-DNTHFDQIMLIHD-FQDASVD 61 V F KM+G GN + ID R + D + + D ++ + + VD Sbjct: 9 VPFYKMQGCGNDFVFIDNRELKLPVALMEDWARKICRRSFSVGADGLVFLEEAPDIPGVD 68 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR-GILVAKENRDGSISVDM 120 N DGS + CGN RC + G + A+ + + Sbjct: 69 YRWHFYNADGSRAEMCGNASRCAALLAFRTGFAGAEHVLGTDAGPVRARVDVAAGMVKVE 128 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + L + R D V+ G PHA+ +++ D D+ Sbjct: 129 LTPPKELSLNNVLRFGD---------------ETHEIHFVNTGVPHAV-WLDADAAALDV 172 Query: 181 ASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 + G L H F G N + V ++ LRT+ERGV T ACG+ A A V + Sbjct: 173 RALGASLRYHERFAPAGTNANFVTVIDQHNILLRTYERGVEDETYACGTGAAAGAVITHA 232 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 L T V+V+ GG LL ++ VF+ G+A + G++ ++ Sbjct: 233 LGLTGPQVTVRSSGGELLGISLEDGSVFLEGKALLVYTGEMQPESL 278 >gi|51473603|ref|YP_067360.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington] gi|81610797|sp|Q68WW4|DAPF_RICTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|51459915|gb|AAU03878.1| diaminopimelate epimerase [Rickettsia typhi str. Wilmington] Length = 270 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 16/277 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + ++F KM G+GN +++ R N++ A N DQ ++ + + Sbjct: 3 NKINFVKMHGLGNDFVIVHKRDLATVCNLSQLAKNMADRHTGIGCDQCIIYE---EYNNV 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + I N DGS + CGN RC+ + + +K T + L+ ISV++G Sbjct: 60 YTMIIYNIDGSNAKLCGNATRCLAKLIYLDTGKKDITIMVGKKKLLCNVEAANKISVNVG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P +R +R+ + L+ V +GNPH I F + L D Sbjct: 120 NVSFNETWMP-SRDRIWAFAERYMLD------LKETMCVDIGNPHLIIFSK--LEPQDQK 170 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G L +F +GVN++ A V + L WERG GLT ACGS AC S A L Sbjct: 171 IIGQKLQAKELFVDGVNVNFAEVKD-NKIYLSVWERGAGLTLACGSGACGSFAAGLKLGF 229 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + +V G L I ++ ++ M GEA G+ Sbjct: 230 VHSPSTVVFKYGNL-IMQEEDGNIIMQGEATFVMRGE 265 >gi|297621677|ref|YP_003709814.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044] gi|297376978|gb|ADI38808.1| Diaminopimelate epimerase [Waddlia chondrophila WSU 86-1044] Length = 284 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 25/285 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F+K G GN ++ID R + A + D ++L+ A D Sbjct: 16 IPFSKYTGCGNDFILIDNRNQVYPSEESDLAEHLCDRQFGVGADGVILLERSDRA--DFV 73 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGE 122 +RI N DG+E + CGNG+RC+ +FL FT E + + DGS+SV M Sbjct: 74 MRIFNPDGTEAEMCGNGIRCLGKFLQELGIEGTRFTIEVMGKKYPLSLHDDGSVSVSMQP 133 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I L+ D G V DL Sbjct: 134 APEISWDIELSIGRKTFHVDFLDTG------------VPHATLSVEKLSAFDLDAIGPK- 180 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241 K V++ + + +RT+ERGV T ACG+ A A + + + Sbjct: 181 -IRYHEKFMPQGTNVDVYHIDESDPSLIYIRTYERGVERETMACGTGATACAIIAWTKEQ 239 Query: 242 TNRAVSVKMLGGG-LLIEWHDN----NHVFMTGEAKKEWEGKLDI 281 + +++ G L + + + + M G A+ + G I Sbjct: 240 IANPIRIQVASGDILEFKISGSLGRIDQIVMKGPAEFIFRGNFSI 284 >gi|149277233|ref|ZP_01883375.1| diaminopimelate epimerase [Pedobacter sp. BAL39] gi|149232110|gb|EDM37487.1| diaminopimelate epimerase [Pedobacter sp. BAL39] Length = 270 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 110/286 (38%), Gaps = 37/286 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI--NALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R T + + D +ML+ A D Sbjct: 12 IHFYKYQGAGNDFILIDNRDLSFKYTGNNAVLQLCNRRFGIGADGLMLLQ--DHADYDFE 69 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG RC+V F S T F + G AK + G+ Sbjct: 70 MLYFNADGKLGSMCGNGGRCIVAFAKHLGIIDSETNFLAVDGPHYAKISDAGNWVDLQM- 128 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D + D +V++ G+PH + V + Sbjct: 129 -----------IDIDHIGND------------GEAYVLNTGSPHYVAQVNNLETLDVYHE 165 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 ++ EG+N++ + L +RT+ERGV T ACG+ A ++ Sbjct: 166 GHSIRNNETYKQEGINVNFVEDLG-DHLFVRTFERGVEDETYACGTGVTAVALSMAQHKG 224 Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 N + VK+LGG L I + N +VF+ G A++ +EG + I Sbjct: 225 QNGHIETPVKVLGGDLRIAFDYNGSQFRNVFLCGPAEQVFEGNVSI 270 >gi|124516340|gb|EAY57848.1| Diaminopimelate epimerase [Leptospirillum rubarum] Length = 290 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 17/292 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIR 65 DF K G+GN +V M +T + I + D I+L+ + +R Sbjct: 6 DFVKSHGLGNDYIV--MTRFPGEMTPERIRLVCDRNFGVGSDGILLLTRASEP---FGLR 60 Query: 66 IINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKE-----NRDGSISV 118 I N DGSE + GNG+R + + F +T+ G++ A+ NR + V Sbjct: 61 IFNPDGSEAEKSGNGLRIFAKFLYEYGYATNRLFRIQTLGGMVTAEVYPDASNRVDRVKV 120 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG+ +D + LA + + + P +S+GNPH +FF E +L Sbjct: 121 DMGKATVDPVSVGLANREKPLVEELLELAP---DLRLKGTAISVGNPHFVFFRE-ELDEK 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + +G + HP+F + +N + RVT +++R WERG G T A GS++CA+ S Sbjct: 177 FMREWGPKIENHPLFPKRINTQMVRVTGPSEIEIRIWERGAGWTLASGSSSCAAATVSVM 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 L K V V+M GG L IE + M G + G + Sbjct: 237 LGKVRSPVRVRMPGGTLAIEVSPEQEIRMEGPVSEVMSGDFSPDLLALLDSA 288 >gi|326794950|ref|YP_004312770.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1] gi|326545714|gb|ADZ90934.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1] Length = 276 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 12/277 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+K +GN +VID + ++ I A+ D +L + S D + Sbjct: 1 MKFSKYHALGNDYIVIDPKNLSGELSETDIRAICNRHFGVGSDG-ILCGPNESDSCDFSL 59 Query: 65 RIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +I N D SE + GNG+R + S + FT ET G++ + +DG Sbjct: 60 KIFNPDASEAEKSGNGLRIFSRYLWDQSLVSYDEFTIETKGGVVNSIVGKDGLTVSVGMG 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + ++ + ++ ++GNPH + ++ D+ Sbjct: 120 ------KVRFTHESN-LESEPIPEIIKIKNREFTYYLANVGNPHCVILLD-DVTPSLAKE 171 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G+++ F N+ +V S+ + WERG G T A GS++ A+ L Sbjct: 172 YGSIIENDTRFLNRTNVQFVKVIDKSSIQIEIWERGAGYTLASGSSSTAAASVVHALGLC 231 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V M GG + IE MTG +K EG++ Sbjct: 232 KSTIDVHMPGGVIGIELDSAFFATMTGAVRKICEGEI 268 >gi|311087957|gb|ADP68036.1| diaminopimelate epimerase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 261 Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 128/267 (47%), Gaps = 10/267 (3%) Query: 19 LVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSC 77 +VI+ + +TS I LS FDQ++L+ D RI N +G+EV+ C Sbjct: 1 MVINCIKKNVFLTSHIIKKLSNRYTGIGFDQLLLVEKSNSLLTDFHYRIFNANGNEVEQC 60 Query: 78 GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR--DGSISVDMGEPILDWKLIPLARS 135 GNG RC FL + + I V+M EP + + S Sbjct: 61 GNGARCFGLFLLLKGLTNKKKISISTKKKPLTIEFLTENMIKVNMNEPDFKFYNL---SS 117 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 + + F I +N + N +VS+GNPH I V+ + + + GN + K+P+F E Sbjct: 118 LQNVLDNNFSIKLMNENLICN--LVSIGNPHCIIKVQ-SIKNAPVNIIGNNIEKNPIFPE 174 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGL 255 GVN+S + + + + LR +ER VG T ACGSAACA+V + V V++LGG L Sbjct: 175 GVNVSFMEILNKKHIKLRVYERNVGETKACGSAACAAVAVGIAQKLLSDTVHVELLGGKL 234 Query: 256 LIEWHD-NNHVFMTGEAKKEWEGKLDI 281 +I W ++M G AK ++G + I Sbjct: 235 IIIWKGFGTPLYMVGPAKHVYDGYIYI 261 >gi|291087473|ref|ZP_06346567.2| diaminopimelate epimerase [Clostridium sp. M62/1] gi|291074770|gb|EFE12134.1| diaminopimelate epimerase [Clostridium sp. M62/1] Length = 278 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 106/266 (39%), Gaps = 14/266 (5%) Query: 15 GNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIINCDGSE 73 GN LV D + + + L D I+ +++I N DGSE Sbjct: 2 GNDYLVFDPNKNEMKLGEEQVKMLCDRNFGIGSDGIL--EGPILDGEQMYVKIYNPDGSE 59 Query: 74 VQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 GNGM R+ + K T + E + + MG+P Sbjct: 60 APKSGNGMGIFARYLRDAGYVQKTKVSWMTLGGPVTVYYLNEEGT-RVKISMGKPTFWSD 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IP+ +M G + ++ +S+GNPH + ++ +++ + G Sbjct: 119 EIPVTGERREMVNQTMVFGKIPYIT----TCLSIGNPHCVIWM-NEISKELVCRIGEHSE 173 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 P F E VN + V ++ + +ERG G T A GS ACA+ A+ L +R + V Sbjct: 174 NAPCFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAANRLGLADRNMYV 233 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAKKE 274 M GG L +E ++ V+MTGE Sbjct: 234 HMPGGILEVEIKEDGVVYMTGEVGYI 259 >gi|329939970|ref|ZP_08289252.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045] gi|329300796|gb|EGG44692.1| diaminopimelate epimerase [Streptomyces griseoaurantiacus M045] Length = 289 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 122/308 (39%), Gaps = 39/308 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M + + F K G N +++ ++ + A+ AL D ++ + Sbjct: 1 MSTR-IAFLKGHGTQNDFVIVPDPENALDLPAAAVAALCDRRAGIGGDGLLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAK 109 A + F+ N DGS + CGNG+R R+L + T G+ A Sbjct: 60 EAREMAAEAEWFMDYRNSDGSVAEMCGNGVRVFARYLQRAGHVEAGDLAIATRGGVKRAH 119 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++DG ++V MG L + ++ V MGNPHA+ Sbjct: 120 LDKDGDVTVGMGRARLPEGEVTVSVDGR----------------TWPARNVDMGNPHAVA 163 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FV+ DL H +A + +GVN+ + +R ERG G T +CG+ A Sbjct: 164 FVD-DLAHAGELLAPPPVAPAGTYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGA 222 Query: 230 CASVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + V +V + GG L+I + + MTG A EG++D Sbjct: 223 CAVAVAAARRDGADPEVTGEASTYTVDVPGGRLMITEYPGGEIEMTGPAVIVAEGEID-- 280 Query: 283 TGKWIKKN 290 +W++ Sbjct: 281 -EEWLRAA 287 >gi|189499284|ref|YP_001958754.1| diaminopimelate epimerase [Chlorobium phaeobacteroides BS1] gi|189494725|gb|ACE03273.1| Diaminopimelate epimerase [Chlorobium phaeobacteroides BS1] Length = 256 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 28/277 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN +V+D + I AL D +L+ + + D +R N Sbjct: 1 MSGAGNDFIVVDNMKRTIRLKESEIRALCTRRTGIGADGFILVEPSE--TYDFSMRYFNA 58 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DG CGNG RC F + + +F+ A + + M EP Sbjct: 59 DGKPGSMCGNGGRCAAFFSRTAGITGDTCSFQANGSRYDAWVTGVERVKLKMTEPDTFRD 118 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 I H N V+ G+PH I + + + + Sbjct: 119 DI--------------------HANGLNCHFVNTGSPHTIIYTGELETFNVHDTGYAVRN 158 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH--KTNRA 245 + +F EG N++ +VT +SL +RT+ERGV T ACG+ A A+ + S L + Sbjct: 159 NNSLFPEGTNVNFLQVTGPDSLSVRTFERGVEAETLACGTGAVAAALMSYRLGKVSSTSV 218 Query: 246 VSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 G L +E+ ++ VF++G AK + G + + Sbjct: 219 SVTVKSGDVLKVEFSEDMREVFLSGPAKVVYTGTVSV 255 >gi|308271343|emb|CBX27951.1| Diaminopimelate epimerase [uncultured Desulfobacterium sp.] Length = 282 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 118/287 (41%), Gaps = 35/287 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R + S + + D +LI + A D Sbjct: 11 IHFFKMSGSGNDFIIIDNRENLIEDKGLASFITKVCARRMSVGADGFILIENCDSA--DF 68 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMG 121 + N DGS + CGNG RC F K +F T GI+ A+ G + V+M Sbjct: 69 KWQFFNSDGSRAEMCGNGARCAAMFACINKIAKPDMSFLTDAGIVHAQVTD-GRVKVNMM 127 Query: 122 EPILDWKL--IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +P IPL + ++ G PH + + D+ D Sbjct: 128 DPTYCKYDYQIPLKK------------------GPITVSSLNTGVPHVVIITD-DIEGAD 168 Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237 + G + H G N++ S ++ +RT+ERGV T ACG+ + AS + + Sbjct: 169 VDGTGREIRFHENYAPAGTNVNFISCVSNSTIHIRTYERGVEGETLACGTGSIASALVAA 228 Query: 238 CLHKTNRAVSVKMLG-GGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 C +K + V G L I + +N +++ G+A+ ++G+L Sbjct: 229 CKYKVESPIDVVTRSKGVLTIHFKQDNGRFYDIYLEGDARVIYKGEL 275 >gi|152994714|ref|YP_001339549.1| diaminopimelate epimerase [Marinomonas sp. MWYL1] gi|150835638|gb|ABR69614.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1] Length = 282 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 125/278 (44%), Gaps = 10/278 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFI 64 +DF K +GN LV+ D + I + D ++ I F D + Sbjct: 1 MDFRKYHALGNVYLVVSPDEFPDEPAALIIKNICHKHYGVASDGVL-IGPFSSNVADFGL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENRDGS-ISVDMG 121 RI N D SE + GNG+R R + +K K FT ET G++ A+ + +G + V+MG Sbjct: 60 RIFNPDASEAEKSGNGLRIFCRSLWDQGLVKDKPFTIETKGGVVRAQVSDNGQRVDVEMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + + IP+ ++ + ++ +NH+ V++GNPH + E Sbjct: 120 KVSFLSQDIPVWGEPREVLLENLNVMSLNHI----YSAVTIGNPHCVILAE-SPTEIMAK 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 FG L+ HP F N+ +V + + WERG G T A GS++CA+ + L Sbjct: 175 EFGPLIETHPNFPNRTNVQFMQVIDRNHIVIEIWERGAGYTLASGSSSCAAAAVAYKLGL 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + ++ V M GG + IE ++ V M+G G + Sbjct: 235 CDSSIKVMMPGGQIDIEISEDFRVSMSGGVTSVCHGSI 272 >gi|307128731|ref|YP_003880761.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI] gi|306483193|gb|ADM90063.1| diaminopimelate epimerase [Candidatus Sulcia muelleri CARI] Length = 259 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 106/282 (37%), Gaps = 34/282 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K + GN ++I+ + I L + D ++LI ++ D ++ Sbjct: 3 INFFKYQATGNDFIIINNIEKSFFLNEKIIKNLCNRNLGIGADGLILIE--KNKKYDFYM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DG E CGNG RC V F + S+ Sbjct: 61 KYYNSDGKEGSMCGNGGRCSVHFAKKIGILNKTNTLFKS------IDGYHYASIKQNIVS 114 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L+ K + L + ++ G+PH I F E Sbjct: 115 LNMKNVELVK------------------VYPEHIYINTGSPHHILFKEKINNINVYKEGK 156 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK-T 242 + GVN++ + + L++RT+ERGV T +CG+ AS +A+ + K Sbjct: 157 KIRFNQKYIKTGVNVNFVK-INKNILNVRTYERGVENETFSCGTGVTASAIAAYHIKKIL 215 Query: 243 NRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLD 280 + VK LGG L +++ +F+ GE ++G ++ Sbjct: 216 YNKIIVKTLGGTLQVKFEKLLKSYKKIFLKGEVNFVYKGIIN 257 >gi|297191643|ref|ZP_06909041.1| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC 25486] gi|297151012|gb|EDY65485.2| diaminopimelate epimerase [Streptomyces pristinaespiralis ATCC 25486] Length = 303 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 109/300 (36%), Gaps = 24/300 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--- 57 Q+S + F K G N +++ + + + L D ++ + Sbjct: 8 QTSPLPFLKGHGTENDFVIVPDPDNALELPASTVARLCDRRAGIGGDGLLRVVRSAAHPE 67 Query: 58 -----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG+R R+L + + K + Sbjct: 68 AEHMAGEAEWFMDYRNADGSVAEMCGNGVRVFARYLQHAGHIDAGDVSVATRGGIKKAHL 127 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++ I ++ + D + V+MGNPHA+ FVE Sbjct: 128 AKAVPGSGVAG-----DITVSMGRAVLPEDGVTVSV--GGRSWPARNVNMGNPHAVAFVE 180 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 +L H ++ +GVN+ + +R ERG G T +CG+ ACA Sbjct: 181 -ELDHAGDLLTVPPFTPASVYPDGVNVEFVVDRGEHHVAMRVHERGSGETRSCGTGACAV 239 Query: 233 VVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 VA+ + AV +V + GG L I + + MTG A EG +D + Sbjct: 240 AVAAARRDGLDPAVTGAPVTYTVDLPGGRLRITERPDGEIEMTGPAVIVAEGMIDPVLLE 299 >gi|325284923|ref|YP_004260713.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489] gi|324320377|gb|ADY27842.1| Diaminopimelate epimerase [Cellulophaga lytica DSM 7489] Length = 257 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 39/283 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI-TSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + IN L D ++L+ + D +D Sbjct: 3 ITFYKYQGTGNDFVMIDNRSLSFPKQDTKLINTLCDRKFGVGADGLILLEN--DEDLDFK 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+E CGNG RC+V F + ++ TF + G+ A D Sbjct: 61 MVYYNADGNESTMCGNGGRCLVAFANFLGVIKEKTTFNAVDGLHNATIKGD--------- 111 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 I N + G+PH + V+ ++ +D+ + Sbjct: 112 -----------------IVSLQMIDVAEVKEKENYSFLDTGSPHHVQLVD-NVNGFDVFT 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 G + G N++ + + +RT+ERGV T +CG+ A +A Sbjct: 154 EGKKIRYGLYGEAGSNVNFV-TKNAKGYTVRTYERGVEDETLSCGTGVTAVALAMHKSGN 212 Query: 242 TN-RAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 TN + +K++GG L I + + +V++TGEAK+ ++G++ Sbjct: 213 TNLTTIPIKVMGGDLEISFTAKDGSYKNVYLTGEAKQVFKGEI 255 >gi|257452327|ref|ZP_05617626.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] gi|317058870|ref|ZP_07923355.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] gi|313684546|gb|EFS21381.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_5R] Length = 267 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 15/279 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME GN ++ D R +I + A D I+ + A D + Sbjct: 1 MKFWKMEAAGNDFVIFDGREIEIKDINALAKKLCDRHFGVGADGILFCQESDTA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG+RC+ RF+ ++ ET G+ + + Sbjct: 59 NYYNSDGSRGEMCGNGIRCLSRFIYENNIVDKRKMNIETDNGVKEVVLTVGENEHI---- 114 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + ++ + + V++G PH V++ + +L Sbjct: 115 -----SQVKVEMGKAEWEKGFQEETLEIEGRSFDFYRVTVGVPHIAILVDEFMKDEELNY 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G +L KHP F N++ +V + + + ++TWERG G T C + + V L K Sbjct: 170 WGAILEKHPSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQRLQKI 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V GG + ++ ++ V + G+A + G +D+ Sbjct: 230 KGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267 >gi|240144179|ref|ZP_04742780.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] gi|257203783|gb|EEV02068.1| diaminopimelate epimerase [Roseburia intestinalis L1-82] Length = 281 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 14/279 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN L+ D + + I L + D I+ +RI N Sbjct: 8 KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65 Query: 69 CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK--ENRDGSISVDMGEPI 124 DGSE + GNG+R R+ +K + + T G + ++ + VDMG + Sbjct: 66 PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGNCMRVDMGYAV 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + IP ++ + N VSMGNP+ + +E + G Sbjct: 126 FEAEQIPALGFEGEVVGESIFFCDN----FYNATCVSMGNPNCVIMLER-VDREKALHLG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N+ + ++ +++ + +ERG G T A G+ ACA+ AS L Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 AV+V M GG L IE+ + +FMTG + GK+ + Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITVAE 277 >gi|312890764|ref|ZP_07750295.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603] gi|311296757|gb|EFQ73895.1| diaminopimelate epimerase [Mucilaginibacter paludis DSM 18603] Length = 264 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 37/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN +++D R N I + D +M + D Sbjct: 3 IQFYKYQGAGNDFILVDNRKNGVNHHNPAWIAQICDRRFGVGGDGMMFLQ--DKEGYDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG RC+V F S T F+ + G AK Sbjct: 61 MIYYNADGQPSSMCGNGGRCIVAFAKYLGIIDSETKFQAVDGEHYAKI------------ 108 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + D + + +N +V++ G+PH + VED + Sbjct: 109 ----------SAEGDWVSLQMIDVAQINRD--GEAYVLNTGSPHYVKLVEDLKHKNVYQE 156 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + +G+N++ + +RT+ERGV T ACG+ A +A ++ Sbjct: 157 GHAIRNNATYRKKGININFVEPMAEGYF-VRTFERGVEDETYACGTGVTAVALAMAQHNQ 215 Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 + ++ VK+LGG L I + + ++F+ G AK +EGK+ Sbjct: 216 QSGHITTPVKVLGGDLNIRFDYDGERFTNIFLEGPAKLVFEGKI 259 >gi|239917255|ref|YP_002956813.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] gi|281414267|ref|ZP_06246009.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] gi|239838462|gb|ACS30259.1| diaminopimelate epimerase [Micrococcus luteus NCTC 2665] Length = 317 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 108/307 (35%), Gaps = 37/307 (12%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF----- 55 + V F K G GN ++I + + + + L+ D ++ Sbjct: 17 SAPRVPFTKGHGTGNDFVLIADPDGNTQLDAQHVARLADRHRGIGADGVIRAVRSARLPE 76 Query: 56 ------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRG 104 + + F+ N DGS + CGNG+R V FL + ++ T T G Sbjct: 77 GEALLAEHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLVEKGLVDLAPGQAITIGTRAG 136 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + G LD +L A S + R VSMGN Sbjct: 137 VKAVTRLEHGYAIDMGPWCYLDPELAEEAASDSMVR-------AHGLTDPRPALSVSMGN 189 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERG 218 PH + + L G P G N+ + +R ERG Sbjct: 190 PHTVVPLASFADLQGLD-LGRAPEVDPAPPHGTNVEFVAAHEPLVREGVGRVRMRVHERG 248 Query: 219 VGLTAACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAK 272 VG T +CG+ ACA VA + + V++ GG L ++ HV ++G A+ Sbjct: 249 VGETQSCGTGACAVAVAMRAWAGDQGTDSWLVEVPGGVLAVDVVPGPEGAEHVVLSGPAE 308 Query: 273 KEWEGKL 279 ++G+L Sbjct: 309 LVFDGEL 315 >gi|291538698|emb|CBL11809.1| diaminopimelate epimerase [Roseburia intestinalis XB6B4] Length = 281 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 14/279 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN L+ D + + I L + D I+ +RI N Sbjct: 8 KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65 Query: 69 CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK--ENRDGSISVDMGEPI 124 DGSE + GNG+R R+ +K + + T G + ++ + VDMG + Sbjct: 66 PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + IP ++ + N VSMGNP+ + +E + G Sbjct: 126 FEAEQIPALGFEGEVVGESIFFCDN----FYNATCVSMGNPNCVIMLER-VDREKALHLG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N+ + ++ +++ + +ERG G T A G+ ACA+ AS L Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 AV+V M GG L IE+ + +FMTG + GK+ + Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGPV--VYIGKITVAE 277 >gi|331087030|ref|ZP_08336105.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409480|gb|EGG88923.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 292 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 16/286 (5%) Query: 5 MVD--FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 M++ K G+GN V D +T + + + D I+ Sbjct: 1 MMNIVLEKYHGLGNDYFVFDPNKNELKLTKENVRMICDRNFGMGSDGIL--EGPIFQEDK 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 ++++ N DGSE + GNG R ++ +++K TF T+ G + + + Sbjct: 59 IYVKVWNPDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLR 118 Query: 120 MGEPI--LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 IP+ ++ + G L VS+GNPH + + ++ Sbjct: 119 ASAGKLSFWSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISK 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + G+ F +N + +V E++ + +ERGVG T A GS ACA+ + Sbjct: 174 PLVCKIGDYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAY 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 L TN V+V M GG L +E D+ VF TGE GK+ + + Sbjct: 234 KLGMTNPGVTVHMPGGKLQVEIQDDWEVFATGEVFYI--GKISLSS 277 >gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens W5455] gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter piscolens W5455] Length = 1364 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 13/287 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + V F KM GN+ + +D R S ++ + D ++++ + Sbjct: 1082 RKRPVRFVKMHCGGNEYIYVDAIRQSVAEPASLSVALCGRRRSVGGDGLVIVAPPR-GKA 1140 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA----KENRDG 114 DA + + + DG+ + GN +R V ++L + +K+K + ET G+ ++ Sbjct: 1141 DARMTLYDADGTRARIGGNALRGVGKYLYEKLDVKKKDLSIETDDGVKALRLYDRDGEIY 1200 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 S+ +G P D +P+ + D + F +S+G+P + + D Sbjct: 1201 SVEALIGRPDFDPARVPVTLNADGRPVVSQYYSC--GGFDDQITCLSLGDPQCVILTD-D 1257 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 +L G L+ + +F EG N+S V +L +RTWER +G T +CG++ CA+ V Sbjct: 1258 CDGAELNVEGPLMERAEIFPEGTNVSCVSVADRHTLRVRTWERRIGETMSCGTSVCAAAV 1317 Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + L + +SVK GG L++ +F+ G ++EG ++ Sbjct: 1318 VAARLGLVDEGEISVKTAGGLLVVRLAPEG-IFLIGGVDCDFEGVIE 1363 >gi|289425147|ref|ZP_06426924.1| diaminopimelate epimerase [Propionibacterium acnes SK187] gi|289427212|ref|ZP_06428928.1| diaminopimelate epimerase [Propionibacterium acnes J165] gi|295130580|ref|YP_003581243.1| diaminopimelate epimerase [Propionibacterium acnes SK137] gi|289154125|gb|EFD02813.1| diaminopimelate epimerase [Propionibacterium acnes SK187] gi|289159681|gb|EFD07869.1| diaminopimelate epimerase [Propionibacterium acnes J165] gi|291376870|gb|ADE00725.1| diaminopimelate epimerase [Propionibacterium acnes SK137] gi|313772149|gb|EFS38115.1| diaminopimelate epimerase [Propionibacterium acnes HL074PA1] gi|313792155|gb|EFS40256.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA1] gi|313801892|gb|EFS43126.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA2] gi|313807505|gb|EFS45992.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA2] gi|313810013|gb|EFS47734.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA1] gi|313818547|gb|EFS56261.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA2] gi|313820314|gb|EFS58028.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA1] gi|313822879|gb|EFS60593.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA2] gi|313825189|gb|EFS62903.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA1] gi|313830341|gb|EFS68055.1| diaminopimelate epimerase [Propionibacterium acnes HL007PA1] gi|313833715|gb|EFS71429.1| diaminopimelate epimerase [Propionibacterium acnes HL056PA1] gi|313838718|gb|EFS76432.1| diaminopimelate epimerase [Propionibacterium acnes HL086PA1] gi|314925201|gb|EFS89032.1| diaminopimelate epimerase [Propionibacterium acnes HL036PA3] gi|314960016|gb|EFT04118.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA2] gi|314962813|gb|EFT06913.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA1] gi|314973346|gb|EFT17442.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA1] gi|314976023|gb|EFT20118.1| diaminopimelate epimerase [Propionibacterium acnes HL045PA1] gi|314978438|gb|EFT22532.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA2] gi|314983955|gb|EFT28047.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA1] gi|314988139|gb|EFT32230.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA2] gi|314989943|gb|EFT34034.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA3] gi|315078030|gb|EFT50081.1| diaminopimelate epimerase [Propionibacterium acnes HL053PA2] gi|315084327|gb|EFT56303.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA2] gi|315085669|gb|EFT57645.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA3] gi|315088909|gb|EFT60885.1| diaminopimelate epimerase [Propionibacterium acnes HL072PA1] gi|315096261|gb|EFT68237.1| diaminopimelate epimerase [Propionibacterium acnes HL038PA1] gi|327326173|gb|EGE67963.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA2] gi|327331952|gb|EGE73689.1| diaminopimelate epimerase [Propionibacterium acnes HL096PA3] gi|327443153|gb|EGE89807.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA2] gi|327445939|gb|EGE92593.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA2] gi|327448082|gb|EGE94736.1| diaminopimelate epimerase [Propionibacterium acnes HL043PA1] gi|327453127|gb|EGE99781.1| diaminopimelate epimerase [Propionibacterium acnes HL092PA1] gi|328753484|gb|EGF67100.1| diaminopimelate epimerase [Propionibacterium acnes HL020PA1] gi|328760605|gb|EGF74172.1| diaminopimelate epimerase [Propionibacterium acnes HL099PA1] gi|332675420|gb|AEE72236.1| diaminopimelate epimerase [Propionibacterium acnes 266] Length = 273 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 31/292 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+ T RM T G+ + + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +SV MG ++ + + P + + NP V + + + + + Sbjct: 118 VSVTMGTVRVESDEV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCDINLN- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 F +GVN+ ++ +R +ERG G T +CG+ A Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAAT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ + D +TG A GK+++ G Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273 >gi|257468500|ref|ZP_05632594.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] gi|317062759|ref|ZP_07927244.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] gi|313688435|gb|EFS25270.1| diaminopimelate epimerase [Fusobacterium ulcerans ATCC 49185] Length = 278 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 79/283 (27%), Positives = 129/283 (45%), Gaps = 16/283 (5%) Query: 6 VDFAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM+ GN ++++ N A D +M + A D + Sbjct: 1 MKFSKMQAAGNDFILMNGMIEKSSNWNETAKKVCDRHFGIGADGLMFCEESLKA--DIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENR-----DGSIS 117 N DGS + CGNG+RC +F+ +K+ F+ ET GI K + + Sbjct: 59 NYYNSDGSRGEMCGNGIRCFAKFVYDNEIVKKNEFSVETDAGIKYIKLDIGALGAIEYLK 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 VDM + K +P + + + IG +F V MG PH FVE D Sbjct: 119 VDMEKVDFKGKNVPCTIEKENILEEEIMIGNKKVIFSS----VLMGVPHTTIFVE-DFDE 173 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 YD+ G+L+ K +F E N++ A+VT+ +++ ++TWERG G T CG+ CA+ + Sbjct: 174 YDVNETGSLMEKADIFPEKTNVNFAKVTADDTIMIKTWERGAGRTLGCGTGCCATAALAH 233 Query: 238 CLHKTNRAVSVKM-LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K + + GG L IE ++ + M+G+A+ G+ Sbjct: 234 KLGKIKKDKIKLLAEGGELFIEIGEDYEITMSGKAETICHGEF 276 >gi|257465882|ref|ZP_05630193.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] gi|315917038|ref|ZP_07913278.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] gi|313690913|gb|EFS27748.1| diaminopimelate epimerase [Fusobacterium gonidiaformans ATCC 25563] Length = 267 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 15/279 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KME GN ++ D R D L D I+ + + D + Sbjct: 1 MKFWKMEAAGNDFVIFDGRNIKIEDIQDLAKKLCDRHFGVGADGILFCE--ESSQADIKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG+RC+ RF+ + ET G+ + + Sbjct: 59 NYYNSDGSRGEMCGNGIRCLSRFIYENKIVDKLKMSIETDNGVKEVVLTVVENEHI---- 114 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + +++ + + V++G PH V++ + +L Sbjct: 115 -----SQVKVEMGKAIWEKEFQKEILEIEGRSFDFYRVTVGVPHIAILVDEFMKDEELNY 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 +G+LL KH F N++ +V + + + ++TWERG G T C + + V L K Sbjct: 170 WGSLLEKHSSFPRKTNVNFIKVLNEKEVQIKTWERGAGRTLGCATGCSSCGVILQRLQKI 229 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V GG + ++ ++ V + G+A + G +D+ Sbjct: 230 KGEVHFYTEGGDVFVQ-TQDDFVTIYGKANLIFTGDMDV 267 >gi|257877303|ref|ZP_05656956.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20] gi|257811469|gb|EEV40289.1| diaminopimelate epimerase [Enterococcus casseliflavus EC20] Length = 277 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R H+ ++ A + D +M + DF + D Sbjct: 3 IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ + + T ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179 P +FD+ + V+++ L +P G PHA+ + Sbjct: 122 P--------PTVTTFDQAYPNPMV-SFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV-VASG 237 LA + +F +G N++ L +RT+ERGV T ACG+ + A+ V + Sbjct: 168 LAELAKEIRYWEVFPKGANVNFYEEDDKGELIVRTYERGVEGFTYACGTGSGATAYVVTK 227 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V + +LGG L +E D + + G+A EG + Sbjct: 228 RHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270 >gi|327330243|gb|EGE71992.1| diaminopimelate epimerase [Propionibacterium acnes HL097PA1] Length = 273 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 31/292 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRSGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+ T RM T G+ + + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +SV MG ++ + + P + + NP V + + + + + Sbjct: 118 VSVTMGTVRVESDKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCDINLN- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 F +GVN+ ++ +R +ERG G T +CG+ A Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAAT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ + D +TG A GK+++ G Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273 >gi|257867193|ref|ZP_05646846.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30] gi|257873528|ref|ZP_05653181.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10] gi|257801249|gb|EEV30179.1| diaminopimelate epimerase [Enterococcus casseliflavus EC30] gi|257807692|gb|EEV36514.1| diaminopimelate epimerase [Enterococcus casseliflavus EC10] Length = 277 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R H+ ++ A + D +M + DF + D Sbjct: 3 IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ + + T ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVTLN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179 P +FD+ + V+++ L +P G PHA+ + Sbjct: 122 P--------PTVTTFDQAYPNPMV-SFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV-VASG 237 LA + +F +G N++ L +RT+ERGV T ACG+ + A+ V + Sbjct: 168 LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVVTK 227 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V + +LGG L +E D + + G+A EG + Sbjct: 228 RHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270 >gi|325568637|ref|ZP_08144930.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755] gi|325157675|gb|EGC69831.1| diaminopimelate epimerase [Enterococcus casseliflavus ATCC 12755] Length = 277 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + + KM+G GN +VID R H+ ++ A + D +M + DF + D Sbjct: 3 IPYTKMQGAGNDFIVIDNRTLKFSHEQLSQFAAQVCHRKFSVGADAVMAV-DFPTGTADF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMG 121 +R N DG+E + CGNG RC+ R+ + + T ET+ G + A V + Sbjct: 62 RMRFYNADGTEAEMCGNGARCIARYAFEKGIAGEQMTIETVAGDVPAWRLSAKHYKVILN 121 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYD 179 P +FD+ + V+++ L +P G PHA+ + Sbjct: 122 P--------PTVTTFDQAYPNPMV-SFVDYVELGDP-----GIPHAVVHYPGLAETELEQ 167 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV-VASG 237 LA + +F +G N++ L +RT+ERGV T ACG+ + A+ V + Sbjct: 168 LAELAKEIRYWEVFPKGANVNFYEEDDKGDLIVRTYERGVEGFTYACGTGSGATAYVVTK 227 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 + V + +LGG L +E D + + G+A EG + Sbjct: 228 RHQQAAANVLLHVLGGELTVEVDVDQGALELIGDAVMVSEGLI 270 >gi|251772478|gb|EES53045.1| Diaminopimelate epimerase [Leptospirillum ferrodiazotrophum] Length = 285 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 16/281 (5%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIR 65 DF K G+GN +V+ + G +T + L + D I+L+ +R Sbjct: 4 DFVKGHGLGNDYIVM-VEGASPKMTEANVRLLCDRNYGIGSDGILLLGQPTPP---FGLR 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-------ENRDGSISV 118 I N DGSE + GNG+R +FL K +F + + R ++ V Sbjct: 60 IFNPDGSEAEKSGNGLRIFSKFLYEYGYAKELSFPIDTKGGRVRSTVTVGADGRVTAVKV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DMG + + + + M + + + VS+GNPH +FFVE + Sbjct: 120 DMGRYSFNPSDVGILGRSNPMIEEVLRLEDGTEI---RGSAVSVGNPHFVFFVEK-IDED 175 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 + G ++ + +F + +N + RV +++R WERG G T A GS++CA+ + Sbjct: 176 FIHEKGRMIEHNKVFPKRINTQMVRVIGRNEIEIRIWERGAGYTLASGSSSCAAATIAVH 235 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + V V M GG L+IE +N+ + M G ++ G L Sbjct: 236 LGRVQSPVRVHMPGGILMIEVDENHEIRMEGPVEEVMTGHL 276 >gi|289706445|ref|ZP_06502803.1| diaminopimelate epimerase [Micrococcus luteus SK58] gi|289556940|gb|EFD50273.1| diaminopimelate epimerase [Micrococcus luteus SK58] Length = 315 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 107/305 (35%), Gaps = 37/305 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-------- 56 V F K G GN +++ + ++ + + L+ D ++ + Sbjct: 19 VPFTKGHGTGNDFVLLADPDGNVHLEAAQVAVLADRHRGIGGDGVIRAVPSRHVEEGRAL 78 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108 + F+ N DGS + CGNG+R V FL + +S T T G+ Sbjct: 79 LAAHPEAEWFMDYRNGDGSIAEMCGNGVRVFVHFLAEKGLVDLAPGESITIGTRAGVKTV 138 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 G LD +L A S + R VSMGNPH + Sbjct: 139 SRLAHGYAIDMGPWSYLDPELAEEAASDAMV-------LAAGLADPRPALSVSMGNPHTV 191 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + L P S G N+ +R ERGVG T Sbjct: 192 VPLASFEDLEGLD-LTRAPEVDPAPSHGTNVEFVAAHEPLVREGVGRARMRVHERGVGET 250 Query: 223 AACGSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWE 276 +CG+ ACA VA + V++ GG L +++ HV + G A+ ++ Sbjct: 251 QSCGTGACAVAVAMRAWSGEGGSDSWLVEVPGGVLGVDFVAHPDGTEHVVLAGPAELVFD 310 Query: 277 GKLDI 281 G+L + Sbjct: 311 GELTV 315 >gi|284032598|ref|YP_003382529.1| diaminopimelate epimerase [Kribbella flavida DSM 17836] gi|283811891|gb|ADB33730.1| diaminopimelate epimerase [Kribbella flavida DSM 17836] Length = 299 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 33/303 (10%) Query: 4 SMVDF--AKMEGIGNKILVIDMRGCHD--NITSDAINALSTDD-NTHFDQIM-LIHDFQ- 56 +M F K G N +++ ++ + L D ++ +I + Sbjct: 9 AMSTFPWLKGHGTENDFVLLPDPDGSVHGDLDPALVRFLCDRYAGIGADGVLRVIEGSRQ 68 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111 + + F+ N DGS Q CGNG+R VR+L K T G+ N Sbjct: 69 TYVEDGGEWFMDYRNADGSTAQMCGNGIRVFVRYLVDEGLTTAKPVRIGTRAGVKEVVLN 128 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG+I+ D+GEP L + H P H V MGNPHA+ FV Sbjct: 129 DDGTITADLGEPA-------LPGPAGIVVEADGHQWPATH--------VDMGNPHAVVFV 173 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + DL + F GVN+ ++ +R ERG G T +CG+ CA Sbjct: 174 D-DLREPGPLVDPPGWSPESAFPHGVNVEFVTRQGPHAVTMRVHERGAGETRSCGTGTCA 232 Query: 232 SVVASGCLHKTNRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 VAS + R V+ V +LGG + + W +NHV +TG A G+ D W+ Sbjct: 233 VTVASARAARQERPVTYRVGVLGGEVSVTWRADNHVELTGPAVVHARGEFD---RAWLPS 289 Query: 290 NED 292 + Sbjct: 290 GRE 292 >gi|303248958|ref|ZP_07335205.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ] gi|302489681|gb|EFL49617.1| diaminopimelate epimerase [Desulfovibrio fructosovorans JJ] Length = 288 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 105/285 (36%), Gaps = 17/285 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61 V F KM+G GN + +D R + D + + D ++ + H + A + Sbjct: 11 VPFFKMQGCGNDFVCVDNRELGYDPEAMPDIVVPVCRKAFGVGADGMIFLDHAPEGAGLA 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 N DGS + CGNG RC R + + Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPASHVFGTDAGPI----------EAAV 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 +P + + L D + V+ G PHA+ FV+ +L D+ Sbjct: 121 DPDSNLVTVRLTSPKDLRLNIDMEMEVEGRHHQMTLHSVNTGVPHAVAFVD-NLETVDVW 179 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G + H F G N++ VT L LRT+ERGV T ACG+ A AS V + L Sbjct: 180 QLGRTVRHHEFFNPAGTNMNFVAVTGKGQLSLRTYERGVEDETYACGTGAVASAVIAKEL 239 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 T ++ GG L + ++ G A+ + G ++ Sbjct: 240 GLTGEETAITTTGGEELGVILRDGKTYLRGAAELVFRGGFYPQSL 284 >gi|315080655|gb|EFT52631.1| diaminopimelate epimerase [Propionibacterium acnes HL078PA1] Length = 273 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 31/292 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQPLRSGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+ T RM T G+ + + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +SV MG ++ + + P + + NP V + + + + + Sbjct: 118 VSVTMGTVRVESGEV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCDINLN- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 F +GVN+ ++ +R +ERG G T +CG+ A Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVYERGSGETMSCGTGTVAVAAT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ + D +TG A GK+++ G Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPFDDGYRAILTGPAVILAAGKVNLPNG 273 >gi|326798527|ref|YP_004316346.1| diaminopimelate epimerase [Sphingobacterium sp. 21] gi|326549291|gb|ADZ77676.1| Diaminopimelate epimerase [Sphingobacterium sp. 21] Length = 263 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 106/284 (37%), Gaps = 40/284 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R + T+ D +ML+ Q A D Sbjct: 1 MKFFKYQGAGNDFVLIDNRDQQFDTKDTALVAQLCDRRFGIGADGLMLLQ--QRAGYDFE 58 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRD-GSISVDMG 121 + N DG+ CGNG RC+V F + T F + G A N +S+ M Sbjct: 59 MVYYNADGNPSSMCGNGGRCIVSFAKHLGIIEKSTRFLAVDGEHEATINDTADWVSLKMI 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + K + FV++ G+PH + V D A Sbjct: 119 DVEHIEKD-------------------------GDDFVLNTGSPHYVKEVVDLKNLDVFA 153 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS--GC 238 + + G+N++ + +RT+ERGV T ACG+ A +A Sbjct: 154 AGRAIRYNATYKQAGINVNFVEAVNDG-YQVRTYERGVEDETLACGTGVTAVALAMAWHH 212 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-----VFMTGEAKKEWEG 277 + +K +GG L I + + +++ G AK +EG Sbjct: 213 NRLGTYSTPIKAMGGDLNIRFTYLGNGVFKDIYLEGPAKLVFEG 256 >gi|258647859|ref|ZP_05735328.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259] gi|260851686|gb|EEX71555.1| diaminopimelate epimerase [Prevotella tannerae ATCC 51259] Length = 284 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 124/281 (44%), Gaps = 7/281 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN + ID + AI +I ++ S + Sbjct: 5 IEFTKMHGAGNDYIYIDTMRFPIAHPEKLAIAWSDRHKGIGG--DGIILIGKNESGYFTM 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSE + CGNG+RCV ++L K +T+ G + D V Sbjct: 63 RIFNNDGSEGKMCGNGIRCVGKYLYDNGITSEKELPIDTLSGTKLLHMTTDADNKVVEVT 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + ++ D VSMGNPH I F+ + YD+ + Sbjct: 123 VDMGEPILADKHQLATPDGSMKDGEVTIGHTNYRGTFVSMGNPHFINFING-VEEYDVQT 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G L + +F E N+ A + S+ +R WERG G+T ACG+ ACA+ VA+ + Sbjct: 182 NGVRLEQAQIFPERCNIEFAEIRPDGSIRMRVWERGSGITMACGTGACATAVAAALTGRA 241 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDIK 282 R ++ M GG L I W++ +NH++MTG A + G +++ Sbjct: 242 GRTSTIVMDGGQLTIVWNENDNHIYMTGPATTVFTGTIELP 282 >gi|256828459|ref|YP_003157187.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028] gi|256577635|gb|ACU88771.1| diaminopimelate epimerase [Desulfomicrobium baculatum DSM 4028] Length = 279 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 99/278 (35%), Gaps = 22/278 (7%) Query: 8 FAKMEGIGNKILVIDMRGC---HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F KM+G GN +VID R +++ A + D I+ + Sbjct: 11 FYKMQGSGNDFIVIDNRAKTISPEDMPRWAKTLCPHAFSIGADGIIFLEIDDSGQAATRW 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + CGNG RC + V P Sbjct: 71 HFFNADGSRAEMCGNGSRCATLLAYMLGMAPAKHLMLTDAGTVH----------AQVFPE 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + L + D + + G PHA+ D+ D+ G Sbjct: 121 AGEVDVQLTPARDMALNFTLDLDDR----TFAAHFANTGVPHAVIVT-PDVKSIDVKGLG 175 Query: 185 NLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + H F G N + +V S L LRT+ERGV T ACG+ A ASV + L Sbjct: 176 AKVRYHDHFAPAGTNANFIQVVSRGELLLRTYERGVESETYACGTGAAASVAVAHALGLC 235 Query: 243 NRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 V GG L I H ++ +F+ G+A+ ++G+ Sbjct: 236 ESKAKVTTSGGEVLEISVHGSD-IFLRGKAQLVYKGEF 272 >gi|320352653|ref|YP_004193992.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032] gi|320121155|gb|ADW16701.1| diaminopimelate epimerase [Desulfobulbus propionicus DSM 2032] Length = 279 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 75/286 (26%), Positives = 109/286 (38%), Gaps = 33/286 (11%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ID R ++ + + D + LI A D Sbjct: 8 IPFWKMSGAGNDFIIIDHRKPLIPQERMAEFARLVCRRKFSVGADGLFLIEPSTRA--DF 65 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 R N DGSE + CGNG RCV RF + FET+ GI+ A Sbjct: 66 KWRFFNADGSEAEMCGNGARCVARFAYMHGIAAARMRFETLAGIVEATV----------- 114 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 RF L V G PHA+ FV+ D+ D+ Sbjct: 115 ------ADTTATIKMTSPHSFRFDRQIEVGGQLFMVHSVDTGVPHAVIFVD-DIDEVDMV 167 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 G L HP+F G N++ T +RT+ERGV T ACG+ A + + Sbjct: 168 GLGRQLRHHPVFAPMGTNVNFVGRTGDG-FRIRTYERGVEDETMACGTGVVAGALIAAVK 226 Query: 240 HKTNRAVSVKMLGGG-LLIEWHDN-----NHVFMTGEAKKEWEGKL 279 + V++ GG L +++ + V + G A + G+L Sbjct: 227 GYADSPVAMVTSGGIALTVQFSGKKGTDVDQVLLKGPAHLIYRGEL 272 >gi|116623686|ref|YP_825842.1| diaminopimelate epimerase [Candidatus Solibacter usitatus Ellin6076] gi|116226848|gb|ABJ85557.1| diaminopimelate epimerase [Candidatus Solibacter usitatus Ellin6076] Length = 268 Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 100/277 (36%), Gaps = 19/277 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K G N L R +A I D ML+ DA + Sbjct: 3 IPFTKTHGAKNDFLFTWRRDVPPETDHEALAIAICDRHTGIGADGWMLVDPPADAEAEGT 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDMGE 122 I++ N DGS + GNG RC FL T G+ + + Sbjct: 63 IQLYNSDGSIAEMSGNGTRCAAAFLIKHGMAAGVVRVRTGAGVKSMRVLERKGLLFQ--- 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + R+ ++ +GNP VE + +D + Sbjct: 120 ---------FEMNMGRAEIAEKRFELQVTGERRDVTLLWVGNPQCAVPVEH--FDFDWRT 168 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G + +HP F N+S R ++D+R WERG G T + G+ + + + Sbjct: 169 LGAEIERHPHFPNRTNVSFVRAVDQHTIDVRFWERGAGETMSSGTGSTGAAAMAVARGLA 228 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V V+ G + + + + +F+TG A+ EG+ Sbjct: 229 SSPVRVQTPAGAMDLRF--DGDIFLTGPAEIVAEGEF 263 >gi|294631821|ref|ZP_06710381.1| diaminopimelate epimerase [Streptomyces sp. e14] gi|292835154|gb|EFF93503.1| diaminopimelate epimerase [Streptomyces sp. e14] Length = 289 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 110/308 (35%), Gaps = 35/308 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF---- 55 M S + F K G N +++ +++ A+ AL D ++ + Sbjct: 1 MSSR-IAFLKGHGTENDFVILPDPDNALDLSPAAVAALCDRRAGIGGDGVLHVVRSAAHP 59 Query: 56 ----QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG R R+L + +A Sbjct: 60 EARAMAAEAEWFMDYRNGDGSVAEMCGNGTRVFARYLQHAG------LAAEGDLAIATRG 113 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 I + K + K + V+MGNPHA+ FV Sbjct: 114 GVKKIHI--------AKDGDITVGMGKARLPEGDVAVSVGERSWPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + DL + + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 D-DLADAGDLLSPPPFSPAAAYPDGVNVEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + AV +V + GG L+I + + MTG A EG++ Sbjct: 225 VAVAAARRDGADPAVTGAPATYTVDVPGGTLVITERPDGEIEMTGAAVIVAEGEI---AA 281 Query: 285 KWIKKNED 292 W++ Sbjct: 282 DWLESVAG 289 >gi|317050249|ref|YP_004111365.1| diaminopimelate epimerase [Desulfurispirillum indicum S5] gi|316945333|gb|ADU64809.1| diaminopimelate epimerase [Desulfurispirillum indicum S5] Length = 289 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 69/280 (24%), Positives = 114/280 (40%), Gaps = 27/280 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ G GN +VI+ N I D ++ I Q+A D Sbjct: 13 FTKISGTGNDFIVINDLARTINYRSIQEIIPRMCHRHFGIGADGVIFIQ--QNAPTDIQW 70 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG RC R++ S+ SF T G++ + + I V + + Sbjct: 71 HFYNADGSRAEMCGNGARCAARYIFSQGIVHENSFNLHTEAGMIGIRLDEQRLIGVQLTK 130 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P ++ G PHA+ V D+ +DL + Sbjct: 131 PHDHRSK----------------YTIKTIKTEYLLSSINTGVPHAVLQVS-DIESFDLMN 173 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLH- 240 + H M++ G N++I + +++ +RT+ERGV T +CG+ + A+ + + Sbjct: 174 MAPEIRFHEMYASGTNVNIYEKVAPDTIRVRTYERGVEGETLSCGTGSVAAAIVACLDDS 233 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 + + V V GG L I + N V MTG+A + G + Sbjct: 234 EVSTEVHVITNGGELFISFDRALNSVTMTGDAHILFTGTI 273 >gi|282862297|ref|ZP_06271359.1| diaminopimelate epimerase [Streptomyces sp. ACTE] gi|282562636|gb|EFB68176.1| diaminopimelate epimerase [Streptomyces sp. ACTE] Length = 290 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 107/296 (36%), Gaps = 31/296 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M + + F K G N +++ ++ + + L D ++ + Sbjct: 1 MSTPQIAFLKGHGTENDFVIVPDPDNAIDLPASLVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DGS + CGNG+R R+L + VA Sbjct: 61 EARAMAEQAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAG------LAAEGDLAVATRG 114 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + + K + S + + + V+MGNPHA+ FV Sbjct: 115 GVKGVHL--------AKDGAVTVSMGHARLPKDGVRVTVDGRTWDARNVNMGNPHAVAFV 166 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 E DL H + ++ +GVN+ + +R ERG G T +CG+ ACA Sbjct: 167 E-DLAHAGDLRSVPPFSPSSVYPDGVNIEFVVDRGPRHVAMRVHERGSGETRSCGTGACA 225 Query: 232 SVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VA+ + +V + GG L+I + V MTG A EG +D Sbjct: 226 VAVAAARRDGVDPARTGAPATYTVDLPGGTLVITEFPDGTVDMTGPAVIVAEGVID 281 >gi|302554597|ref|ZP_07306939.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM 40736] gi|302472215|gb|EFL35308.1| diaminopimelate epimerase [Streptomyces viridochromogenes DSM 40736] Length = 290 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 118/307 (38%), Gaps = 38/307 (12%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH-------- 53 S + F K G N +++ ++ + AL D ++ + Sbjct: 2 SMRIPFLKGHGTENDFVIVPDPENTLDLPPATVAALCDRRAGIGGDGLLHVVRSAAHPEA 61 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKEN 111 A + F+ N DGS + CGNG+R R+L T G+ Sbjct: 62 KSMSAEAEWFMDYRNGDGSIAEMCGNGVRVFARYLQRAGHVTEGDLAIATRGGVKTVHIA 121 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 +DG I+V MG+ +L + ++ V+MGNPHA+ FV Sbjct: 122 KDGDITVGMGKALLPEGDVTVSV----------------GERSWPARNVNMGNPHAVAFV 165 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + DL H + + +GVN+ + +R ERG G T +CG+ ACA Sbjct: 166 D-DLTHAGDLYAPPPFSPPAAYPDGVNVEFVVDRGPGHVAMRVHERGSGETRSCGTGACA 224 Query: 232 SVVASGCLHKTNRAV-------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 VA+ + AV +V + GG L+I + + MTG A EG++D Sbjct: 225 VAVAAARRDGADPAVTGTPATYTVDVPGGTLVITERPDGQIEMTGPALIVAEGEID---A 281 Query: 285 KWIKKNE 291 W++ Sbjct: 282 GWLETAT 288 >gi|282854032|ref|ZP_06263369.1| diaminopimelate epimerase [Propionibacterium acnes J139] gi|282583485|gb|EFB88865.1| diaminopimelate epimerase [Propionibacterium acnes J139] gi|314922999|gb|EFS86830.1| diaminopimelate epimerase [Propionibacterium acnes HL001PA1] gi|314966775|gb|EFT10874.1| diaminopimelate epimerase [Propionibacterium acnes HL082PA2] gi|314981110|gb|EFT25204.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA3] gi|315091936|gb|EFT63912.1| diaminopimelate epimerase [Propionibacterium acnes HL110PA4] gi|315103437|gb|EFT75413.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA2] gi|327327601|gb|EGE69377.1| diaminopimelate epimerase [Propionibacterium acnes HL103PA1] Length = 273 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 106/292 (36%), Gaps = 31/292 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+ T RM T G+ K + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +SV MG ++ + + P + + NP V + + + + + Sbjct: 118 VSVTMGTVRVESDKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCGINLN- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAAT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ D +TG A GK+D+ G Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273 >gi|213614470|ref|ZP_03371296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 216 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 9/222 (4%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+M Sbjct: 1 HYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 60 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 GEP + +P + ++ VVSMGNPH + V+ ++ + Sbjct: 61 GEPNFEPAQVPF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAV 114 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G +L H F E N+ +V E + LR +ERG G T ACGS ACA+V Sbjct: 115 ETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQG 174 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 V V++ GG L I W H ++MTG A ++G + + Sbjct: 175 LLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 216 >gi|325663505|ref|ZP_08151915.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470404|gb|EGC73635.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA] Length = 291 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 116/287 (40%), Gaps = 12/287 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN V D +T + + + D I+ ++++ N Sbjct: 7 KYHGLGNDYFVFDPNKNELKLTKENVRMICDRNFGMGSDGIL--EGPIFQEDKIYVKVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI-- 124 DGSE + GNG R ++ +++K TF T+ G + + + Sbjct: 65 PDGSEAEKSGNGDRIFAKYLKDAGYIQKKHVTFYTLGGAIQVTYLNEDGSRLRASAGKLS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP+ ++ + G L VS+GNPH + + ++ + G Sbjct: 125 FWSDEIPVTGERREVINEDMVFG----RTLYPVTCVSIGNPHCVIPMR-EISKPLVCKIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N + +V E++ + +ERGVG T A GS ACA+ + L TN Sbjct: 180 DYAEIARYFPNKINTQLLKVIDQENIQIEIFERGVGYTLASGSCACAAAGVAYKLGMTNP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 V+V M GG L +E D+ VF TGE + L + G+ ++ Sbjct: 240 GVTVHMPGGKLQVEIQDDWEVFATGEVFYIGKISLSNEFGERLRAAA 286 >gi|319790237|ref|YP_004151870.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1] gi|317114739|gb|ADU97229.1| diaminopimelate epimerase [Thermovibrio ammonificans HB-1] Length = 269 Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 119/284 (41%), Gaps = 37/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALS-TDDNTHFDQIMLIHDFQDA 58 + FAK++G GN ++I+ + +A+ + D ++L+ D A Sbjct: 3 LKFAKLQGTGNDFVIINNLAGEFDRFRGTLPVKEAVKRICSRRTGVGADGLILVEDSTVA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSIS 117 D R N DGS + CGNGMRC RF+ ET+ G++ A Sbjct: 63 --DLSWRFYNADGSTAEMCGNGMRCFARFVYEEGLAPNEMRVETLAGVVEAFV-----YG 115 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + + + L D + ++ G PHA+ FVE Sbjct: 116 PIVKVGLTKPRELALNLKVDGL----------------TVHFINTGVPHAVIFVER-ADA 158 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 ++ G + HP+F G N++ L+ + +RT+ERGV T ACG+ + AS + Sbjct: 159 VNVKEIGRKVRFHPLFAPAGTNVNFVE-VRLDRIVVRTYERGVEDETLACGTGSVASALI 217 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEG 277 + + K + V V++ G L + + + V++ G K ++G Sbjct: 218 AAKVFKLSSPVEVEVRSGERLKVHFDPKLSRVYLEGGTKWIYDG 261 >gi|315093308|gb|EFT65284.1| diaminopimelate epimerase [Propionibacterium acnes HL060PA1] Length = 273 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 107/292 (36%), Gaps = 31/292 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+ T RM T G+ K + DG Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVKLHDDGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +SV MG ++ + + P + + NP V + + + + + Sbjct: 118 VSVTMGTVRVESDKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCGINLN- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGPGETMSCGTGTVAVAAT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ +D +TG A GK+D+ G Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPSNDGYRAILTGPAVILAAGKVDLPNG 273 >gi|157803827|ref|YP_001492376.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel] gi|166225750|sp|A8EZ08|DAPF_RICCK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157785090|gb|ABV73591.1| diaminopimelate epimerase [Rickettsia canadensis str. McKiel] Length = 269 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 16/275 (5%) Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++F KM G+GN ++++ R N++ A N DQ ++ + + Sbjct: 5 INFVKMHGLGNDCVIVNKRDLLNAHNLSQLAKNIADRHTGIGCDQFIIYENHNNF---YE 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + I N DGS + CGN RC+ + + +K T L+ + + ISV++G Sbjct: 62 MIIYNIDGSSAKLCGNATRCLAKLIYLDTGKKDITIVVGNKELLCRIEDENKISVNVGAV 121 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + L+ V +GNPH + F + L D Sbjct: 122 SFNETWMP-------SRDKIWAFAARYMIDLKETICVDVGNPHLVIFSK--LESQDQKIV 172 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L +F+ GVN++ A + ++L WERGVGLT ACGS AC S A + Sbjct: 173 GETLQAKELFANGVNVNFAEIKD-NKINLSVWERGVGLTGACGSGACGSFAAGLKRGFIH 231 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +V G L ++ +N ++ M G A EG Sbjct: 232 SPSTVVFKHGSLNMK-EENGNIIMQGSATLIAEGV 265 >gi|332663347|ref|YP_004446135.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100] gi|332332161|gb|AEE49262.1| Diaminopimelate epimerase [Haliscomenobacter hydrossis DSM 1100] Length = 262 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 108/286 (37%), Gaps = 40/286 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCH--DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDA 62 + F K +G GN +++D R + + + L D ++L+ + D Sbjct: 4 IPFYKYQGAGNDFIMVDQRDNQWINREDRELVEKLCHRRFGIGADGLILLQNH--PGFDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DG E CGNG RC V F + F + G A N + Sbjct: 62 EMIYFNADGREGSMCGNGGRCTVAFARQLGVIGDRCHFLAVDGPHDANINNPEWV----- 116 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + K+I + + N + ++ G+PH I FV+ ++ D+ Sbjct: 117 ----ELKMIDVTQ----------------VEEGSNFYYLNTGSPHYIAFVD-NVDQIDVV 155 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 G + + F + L + T+ERGV T ACG+ A+ +A Sbjct: 156 QEGRAVRYNARFRAEGTNVNFTQLTANGLKVATYERGVEDETLACGTGVTAAALAYHLKR 215 Query: 241 KTNR---AVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGKL 279 + V +++ GG + I + + V++ G AK + G++ Sbjct: 216 GGPKGAFEVPIQVKGGDMAIRFEATAQGFSDVWLCGPAKMVFAGEI 261 >gi|239905018|ref|YP_002951757.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1] gi|239794882|dbj|BAH73871.1| diaminopimelate epimerase [Desulfovibrio magneticus RS-1] Length = 285 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 25/287 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQDASVD 61 V F KM+G GN + +D R + D + + D ++ H + + + Sbjct: 11 VPFFKMQGCGNDFVCVDNRVLGIDPAAMPDLVMPVCRKAFGVGADGMIFFDHAPEGSGLA 70 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRD-GSISVD 119 N DGS + CGNG RC R + F T G + A+ + D ++V Sbjct: 71 YIWHFFNADGSRAEMCGNGSRCAARLAWMLGIAPAKHVFGTDAGPIEAEVDPDSNQVTVQ 130 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P I + V+ G PHA+ ++ L D Sbjct: 131 LTPPKDLRMAIDIEVEGRPFHL----------------HFVNTGVPHAVAVMDH-LELVD 173 Query: 180 LASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + G + +H F G N++ +L LRT+ERGV T ACG+ A AS + + Sbjct: 174 VWKLGRAIRQHQYFAPAGTNVNFISSEEKGTLSLRTYERGVEDETYACGTGAVASAIVAR 233 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 L T + GG +L + ++ G A+ ++G+ ++ Sbjct: 234 ELGMTGEETDITTTGGEVLGVILRDGKTYLRGAAELVFKGEFYPQSL 280 >gi|328865366|gb|EGG13752.1| hypothetical protein DFA_11513 [Dictyostelium fasciculatum] Length = 381 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 84/380 (22%), Positives = 131/380 (34%), Gaps = 99/380 (26%) Query: 1 MQSSMVDFAKMEGIGNKILVI---------------DMRGC--------HDNITSDAINA 37 + S+ + F KM+G GN +V D ++++ + Sbjct: 2 IHSNEITFTKMQGAGNDFIVFKKEDIKVIPNKQFSPDSSEGVRSGASLTIEDLSVISKKL 61 Query: 38 LSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----- 92 DQ++++ D +A D + I N DGS+ CGNG+RC +++ Sbjct: 62 AHRKLGIGCDQLIIVADSPNADTDYEMLIFNSDGSQASMCGNGIRCFSKYIIDNSVKSIH 121 Query: 93 ---------------------------KRKSFTFETIRGILVA----------------K 109 T+ G ++ Sbjct: 122 DKDNKNNGSSGSGGSSDDGESSSNESENAIVHRVHTLAGTIICSTDKSQIGSKNNGDSYY 181 Query: 110 ENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS------- 161 + V+MG P L L D+ + V Sbjct: 182 REDTMLVKVNMGNPYLLRTNDNTLLVPNDRTILVPTPNPSTDKPIYLERVQVDERRAIDV 241 Query: 162 ----MGNPHAIFFVED-----------DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 MGNPH + F++D D+ D++ G LAKH MF + N+ T Sbjct: 242 VLVSMGNPHCVIFLQDNIEKGQLPEGTDIDTMDISEIGQKLAKHKMFVDSCNIEFVSSTK 301 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDN-- 262 R WERG G T ACG+ ACA VA+ + K+ + +S+ M GG LLI+W+ N Sbjct: 302 ANHFKARVWERGAGETLACGTGACAVAVATVLVGKSLPEQQISINMPGGELLIDWNANEN 361 Query: 263 -NHVFMTGEAKKEWEGKLDI 281 VF TG A + + I Sbjct: 362 FGKVFKTGPATSVFSSVIKI 381 >gi|315502606|ref|YP_004081493.1| diaminopimelate epimerase [Micromonospora sp. L5] gi|315409225|gb|ADU07342.1| diaminopimelate epimerase [Micromonospora sp. L5] Length = 281 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 100/294 (34%), Gaps = 30/294 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58 ++F K G GN +++ ++T + AL D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60 Query: 59 --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG R VR+L R + G + R G + Sbjct: 61 AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDR------SLAAPSGGTLPIATRAGLV 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + +A + + L L V +GNPH + + L Sbjct: 115 RARVEGAD-------VAVEMRRPRLYDTATATLGGLTL-PGTAVDVGNPHLVCALPAALE 166 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIA---RVTS--LESLDLRTWERGVGLTAACGSAACA 231 L F GVN+ + +R +ERG T +CG+ ACA Sbjct: 167 LTGLDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGTGACA 226 Query: 232 SVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 + ++V + GG L + + +++G A G L Sbjct: 227 VAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAAL 279 >gi|302866047|ref|YP_003834684.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029] gi|302568906|gb|ADL45108.1| diaminopimelate epimerase [Micromonospora aurantiaca ATCC 27029] Length = 281 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 98/298 (32%), Gaps = 38/298 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58 ++F K G GN +++ ++T + AL D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLDLTPGLVAALCDRRRGLGGDGVLRVVRAAKHPEGVAL 60 Query: 59 --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG R VR+L R + T G++ A+ Sbjct: 61 AGEAEWFMDYWNSDGSFAEMCGNGARVFVRYLLDRSLTAPSGGTLPIATRAGLVRARVEG 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + + D L V +GNPH + + Sbjct: 121 EDVAVEMRRPRLYDTATATLGG------------------LTLPGTAVDVGNPHLVCALP 162 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIA---RVTS--LESLDLRTWERGVGLTAACGS 227 L L F GVN+ + +R +ERG T +CG+ Sbjct: 163 AALELTALDLTRAPEVDASTFPSGVNVEFTTPGEPVDGTDGHVLMRVYERGSAETLSCGT 222 Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 ACA + ++V + GG L + + +++G A G L Sbjct: 223 GACAVAAVALRDAGLDTGTMTVDVPGGRLTVTVTAD-SCWLSGPAVLVATGTLTPAAL 279 >gi|50842503|ref|YP_055730.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202] gi|50840105|gb|AAT82772.1| diaminopimelate epimerase [Propionibacterium acnes KPA171202] gi|313764469|gb|EFS35833.1| diaminopimelate epimerase [Propionibacterium acnes HL013PA1] gi|313812956|gb|EFS50670.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA1] gi|313816007|gb|EFS53721.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA1] gi|313827764|gb|EFS65478.1| diaminopimelate epimerase [Propionibacterium acnes HL063PA2] gi|314915461|gb|EFS79292.1| diaminopimelate epimerase [Propionibacterium acnes HL005PA4] gi|314918255|gb|EFS82086.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA1] gi|314920068|gb|EFS83899.1| diaminopimelate epimerase [Propionibacterium acnes HL050PA3] gi|314932082|gb|EFS95913.1| diaminopimelate epimerase [Propionibacterium acnes HL067PA1] gi|314955743|gb|EFT00143.1| diaminopimelate epimerase [Propionibacterium acnes HL027PA1] gi|314958158|gb|EFT02261.1| diaminopimelate epimerase [Propionibacterium acnes HL002PA1] gi|314967819|gb|EFT11918.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA1] gi|315098522|gb|EFT70498.1| diaminopimelate epimerase [Propionibacterium acnes HL059PA2] gi|315101120|gb|EFT73096.1| diaminopimelate epimerase [Propionibacterium acnes HL046PA1] gi|315105396|gb|EFT77372.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA1] gi|315108341|gb|EFT80317.1| diaminopimelate epimerase [Propionibacterium acnes HL030PA2] gi|327450796|gb|EGE97450.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA3] gi|327453859|gb|EGF00514.1| diaminopimelate epimerase [Propionibacterium acnes HL083PA2] gi|328754215|gb|EGF67831.1| diaminopimelate epimerase [Propionibacterium acnes HL087PA1] gi|328754534|gb|EGF68150.1| diaminopimelate epimerase [Propionibacterium acnes HL025PA2] Length = 273 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 105/292 (35%), Gaps = 31/292 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQD 57 M F K G GN +++D D +TS + L D + + D+ Sbjct: 1 MTTFWKGHGTGNDFVIVD---QQDPLTSAQVRWLCHRRFGIGADGTLQALRAGDVEDWNG 57 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 F+ N DG+ + CGNG+R R+ T RM T G+ + + G Sbjct: 58 DPDLWFMDYRNADGTIAEMCGNGLRVFARYLVQTGRMTTTEADVATRAGVRHVRLHDGGD 117 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 +SV MG ++ + + P + + NP V + + + + + Sbjct: 118 VSVTMGTVRVESGKV--------TIEHQDMWWPACKVDVGNPHAVVVTDHTTVCGINLN- 168 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 169 -------DSPTWRPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAAT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 +V++ GG +++ D +TG A GK+D+ G Sbjct: 222 MATRTGHRGPWTVQVPGGRVVVTLSPSDDGYRAILTGPAVILAAGKVDLPNG 273 >gi|26990495|ref|NP_745920.1| diaminopimelate epimerase [Pseudomonas putida KT2440] gi|24985470|gb|AAN69384.1|AE016575_2 diaminopimelate epimerase [Pseudomonas putida KT2440] Length = 268 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 19/271 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K GN LV R C + + I+ + D I++ Sbjct: 1 MQFYKYHAAGNDYLV--YRDCVPFDCSKPMISRICDRHRGLGSDGILV--PVIKEGERLS 56 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 +RI N DGS+ + GNG+R + R+L + FE + + Sbjct: 57 VRIYNTDGSQAEKSGNGLRILCRYLWDQNIVAGSPFEISTKGGIVT-----------CQV 105 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + + I +A V+ L+ VSMGNPH + FV+ Sbjct: 106 LDNGQRISIAMGQAAFANTAAFTVDVDGTPLQL-HPVSMGNPHCVVFVDQPTETL-ARQL 163 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G L+ + +F + N+ RV ++L+++ WERGVG T + G+++CA+ S L Sbjct: 164 GPLIERLSIFPDRTNVQFVRVIDRQTLEVQIWERGVGYTLSSGTSSCAAAAVSRRLGLVG 223 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 V+V M GG ++IE D+ HV M G + Sbjct: 224 PRVAVNMAGGVIMIELDDDYHVLMQGPVCRV 254 >gi|255530124|ref|YP_003090496.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366] gi|255343108|gb|ACU02434.1| diaminopimelate epimerase [Pedobacter heparinus DSM 2366] Length = 261 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 37/285 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID +I + + + D +M + D Sbjct: 3 IHFFKYQGAGNDFILIDHSASPIKDIDYEWVKKICDRRFGVGGDGLMFL--TSHPDYDFE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 + N DG CGNG RC+V F T F + G AK + +G+ Sbjct: 61 MLYFNSDGRPGSMCGNGGRCIVAFAKHLGIIDKETNFLAVDGPHYAKISAEGNW------ 114 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + I +V++ G+PH + +E+ + Sbjct: 115 ------------------VELQMIDIDTIGRDGEAYVLNTGSPHYVARMENLATYDVYHE 156 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + EG+N++ + L +RT+ERGV T ACG+ A ++ + Sbjct: 157 GKAIRNNETYKKEGINVNFVEDKG-DHLFVRTFERGVEDETYACGTGVTAVALSMALHKQ 215 Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLD 280 + + VK+LGG L +E+ N +VF+ G A+K +EG+L+ Sbjct: 216 QSGHLKTPVKVLGGDLSVEFDYNGRQFTNVFLCGPAEKVFEGELN 260 >gi|323356747|ref|YP_004223143.1| diaminopimelate epimerase [Microbacterium testaceum StLB037] gi|323273118|dbj|BAJ73263.1| diaminopimelate epimerase [Microbacterium testaceum StLB037] Length = 284 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 99/296 (33%), Gaps = 38/296 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF---------QD 57 F K G GN +V+ +++ I L D ++ + Sbjct: 6 FTKGHGTGNDFVVLADPDGELDLSDAQIAVLCDRHFGIGADGLLRVVRSAAIDEGAEAAA 65 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDG 114 + + F+ N DGS+ + CGNG R R+L+ T G+ + G Sbjct: 66 SGAEWFMDYRNADGSKAEMCGNGTRVFARYLSDTGLASLDGGLRIGTRAGVKTLTRSERG 125 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + ++ + R + +GNPH + V D Sbjct: 126 Y---------------EVDLGAFAIEATDTLVRAKGLPVARPGVGIDVGNPHVVVAVASD 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGSA 228 L P G N+ ++ LR +ERGVG T +CG+ Sbjct: 171 AELEALD-LTYQPVLDPAPRHGANVEFVVPADPLVQEGVGAIRLRVFERGVGETLSCGTG 229 Query: 229 ACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A+ +A + +V GG L + + HVF++G A + G++ + Sbjct: 230 VAAAALAVRHWAGSAAPDVWTVDTPGGTLGVRVA-DGHVFLSGPASLVFTGEVTLA 284 >gi|302525517|ref|ZP_07277859.1| diaminopimelate epimerase [Streptomyces sp. AA4] gi|302434412|gb|EFL06228.1| diaminopimelate epimerase [Streptomyces sp. AA4] Length = 275 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 113/283 (39%), Gaps = 28/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQ----DASV 60 ++F K G N +++ ++T++ + AL D ++ + + ++ Sbjct: 4 IEFLKGHGTQNDFVLLPDAAGRLDLTAERVAALCDRQRGIGADGVLRVVRAKAIGEESVG 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK--SFTFETIRGILVAKENRDGSISV 118 + F+ N DGS + CGNG R R+L + F T G + D S++V Sbjct: 64 EWFMDYRNADGSIAEMCGNGTRVFARYLVDAGLAEAGEFVIGTRAGDRPVVVHPDRSVTV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG + + + + V++GNPH + + D+ Sbjct: 124 QMGPAAITGTSVTVVAGQPF-----------------SGVAVNVGNPHLVSVTDTDIAGL 166 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS-G 237 DL + H F GVNL V +L +R ERGVG T ACG+ A+V AS Sbjct: 167 DLRDQPDFD--HDFFPAGVNLEFVNVLGEGALRMRVHERGVGETRACGTGTVAAVAASLH 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 K +V + GG + + +TG A+ G+LD Sbjct: 225 LAGKDTGESTVDIPGGRVSVTV-GRGESTLTGPAEIVARGELD 266 >gi|260655041|ref|ZP_05860529.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1] gi|260630152|gb|EEX48346.1| diaminopimelate epimerase [Jonquetella anthropi E3_33 E1] Length = 277 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 29/284 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 ++F KM G GN +V+D + + A + D +++I + A+ Sbjct: 1 MNFWKMNGNGNDFIVVDATAAENIGLDWPAVARALCPRRQSIGADGLLVIERSKTAN--F 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKEN-RDGSISVDM 120 F+RI N DGSE + CGNG RC RF +S FET+ G++ A+ + R I++ Sbjct: 59 FMRIFNADGSEGEMCGNGARCAARFAACAGLAPQSMEFETMAGLMRARVDGRYVEINMGR 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P +W + + +G PH + F +++ Sbjct: 119 VRPEPEWSDRTMTLEGE----------------TFRATFALVGVPHLVLFSREEVGVDFA 162 Query: 181 ASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGC 238 +G L F +G N++ A + + T+ERGV LT +CG+ A +A+ Sbjct: 163 RRWGERLRNDTAQFRQGTNVTFAAPIARGEMRAVTYERGVEDLTESCGTGCVAVALAARL 222 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGK 278 + V GG + + + G G+ Sbjct: 223 NGLSGPVTEVHNPGGTNRVSLTEMGDGEYEALLGGTTSLVMTGQ 266 >gi|15895882|ref|NP_349231.1| diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824] gi|21362482|sp|Q97FV2|DAPF_CLOAB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|15025650|gb|AAK80571.1|AE007760_1 Diaminopimelate epimerase [Clostridium acetobutylicum ATCC 824] gi|325510034|gb|ADZ21670.1| diaminopimelate epimerase [Clostridium acetobutylicum EA 2018] Length = 333 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 74/303 (24%), Positives = 130/303 (42%), Gaps = 14/303 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN ++ID + N+ + AI A + D I+ + Sbjct: 14 INILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQKSDI--C 71 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA +RI N DGSE + CGNG+RCV R++ + ++S ET++ K D V Sbjct: 72 DAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLNKESVEIETLKSKYWVKLQEDIYEGVKT 131 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + + + + VS+ NPH I V + Sbjct: 132 VKIDIKSVSLDVKTLPLNYKKEKLIFDKIPELSDEFDFTAVSITNPHLIAIVNNIDSDKL 191 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + + +GVN+S +V ++ ++T+ERGVGLT +CG+A AS + S Sbjct: 192 VEIGKKGNSTKSVLPQGVNVSFVKVIDSSNIYVKTYERGVGLTKSCGTAMTASSIVSCIG 251 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 K + A++V GG + H +++ V G A +EG +++ K + D+ Sbjct: 252 EKVQFDNAINVYNDGGAIKTIVHKDSNGNYSVDFIGNATFIFEGTMELDKRKIEQFTIDE 311 Query: 294 EAY 296 + Sbjct: 312 SKF 314 >gi|159037042|ref|YP_001536295.1| diaminopimelate epimerase [Salinispora arenicola CNS-205] gi|157915877|gb|ABV97304.1| Diaminopimelate epimerase [Salinispora arenicola CNS-205] Length = 278 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 101/289 (34%), Gaps = 30/289 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD------- 57 ++F K G GN +++ +T + AL D ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLELTPGLVAALCDRRRGIGGDGVLRVVRAAHHADGVAL 60 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG R VR+L G ++ R G + Sbjct: 61 ADEAEWFMDYWNSDGSAAEMCGNGARVFVRYLLESG------LAAPSGAVLPVATRAGVV 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + +A + + + L L V +GNPH + V L Sbjct: 115 RARVEGEG-------VAVEMRRPRLAGASVAGLGGLAL-PGTAVDVGNPHLVCPVPAGLE 166 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACA 231 L +F GVN+ V + +R +ERG T +CG+ ACA Sbjct: 167 LSALDLTRAPEFDPVVFPAGVNVEFVTVGDPVDGADGHVRMRVYERGSAETHSCGTGACA 226 Query: 232 SVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V+V + GG L++ +++G A G++ Sbjct: 227 VAAVALRDGGRDTGVVAVDVPGGRLVVTLT-TQSCWLSGPAVLVATGEV 274 >gi|115379978|ref|ZP_01467031.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|310823066|ref|YP_003955424.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|115363009|gb|EAU62191.1| diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] gi|309396138|gb|ADO73597.1| Diaminopimelate epimerase [Stigmatella aurantiaca DW4/3-1] Length = 283 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 106/280 (37%), Gaps = 11/280 (3%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRII 67 K G+GN +V+D R +I ++ + D ++ + Q A + + Sbjct: 8 FKYHGLGNDFVVLDRRQTGVDIDAELSRWMCDRRRGIGADGVLSLLPSQQGL--ARMVVH 65 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV-AKENRDGSISVDMGEPILD 126 N DGS + CGNG+RC V++L + + G V A + V + + Sbjct: 66 NADGSIAEMCGNGLRCAVKYLVDHGGGRPERIQVETGAGVLACVPGYEAGGVAEVDISMG 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 + + F P+ VSMGNPH + Y+ G + Sbjct: 126 PARLVAPNLPSGVTGQPFVEAPIPEHLGLRGTAVSMGNPHLVLLGHP---LYEAERLGPV 182 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNR 244 L HP F + N+ R + L + WERG GLT G+ A A+ + Sbjct: 183 LEHHPSFPDRTNVEFVR-VDPDGLTVVVWERGCGLTQACGTGACAAAAAAVLARRLPADT 241 Query: 245 AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDIKT 283 + V + GG L I + + + + G +EG + I Sbjct: 242 WLRVTLPGGDLQIRVPSDLSEIRLRGPVAAVFEGVVTIPA 281 >gi|320008153|gb|ADW03003.1| diaminopimelate epimerase [Streptomyces flavogriseus ATCC 33331] Length = 290 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 119/310 (38%), Gaps = 38/310 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD-- 57 M +S + F K G N +++ ++ + L D ++ + Sbjct: 1 MSTSQIAFLKGHGTENDFVIVPDPDNALDLPVPVVARLCDRRAGIGGDGLLHVVRSAAHP 60 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R R+L + T GI A Sbjct: 61 DARDMADEAEWFMDYRNADGSVAEMCGNGVRVFARYLQRAGFVADGDLAVATRGGIKRAH 120 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 ++DG I+V MG +L + + D V+MGNPHA+ Sbjct: 121 IDKDGDITVSMGRAVLPGSGVTVTVDGRSWDARN----------------VNMGNPHAVA 164 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 FVE DL H + ++ +GVN+ + +R ERG G T +CG+ A Sbjct: 165 FVE-DLDHAGDLFSVPPFSPQSVYPDGVNIEFVADRGPRHVAMRVHERGSGETRSCGTGA 223 Query: 230 CASVVASGCLHKTNR-------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 CA VA+ + +V + GG L+I H + + MTG A EG +D Sbjct: 224 CAVAVAAARRDGVDPAQTGAPATYTVDLPGGTLVITEHPDGGIDMTGPAVIVAEGVIDPS 283 Query: 283 TGKWIKKNED 292 W++ Sbjct: 284 ---WVETMIG 290 >gi|158313082|ref|YP_001505590.1| diaminopimelate epimerase [Frankia sp. EAN1pec] gi|158108487|gb|ABW10684.1| Diaminopimelate epimerase [Frankia sp. EAN1pec] Length = 307 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 121/300 (40%), Gaps = 34/300 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI-----HDF--QD 57 V F K G GN L++ +++ + + AL D ++ + Sbjct: 11 VRFVKGHGTGNDFLILPDADGELDLSPELVRALCHRGTGIGADGVLRVVLTAAEPAAGDS 70 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 A+ F+ N DGS + CGNG+R R+ T G+ + G Sbjct: 71 AAARWFMDYRNADGSIAEMCGNGIRVFARYLVDAGYAAPGRLVIATRAGLRAVEVPAGGD 130 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++V+MG P L +P+ + + VSMGNPHA+ F + DL Sbjct: 131 VTVEMGPPELAAGPVPVTVAGREF----------------AAVPVSMGNPHAVCFAD-DL 173 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSI-ARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 LA +P + +++ V + + + +R +ERGVG TA+CG+ ACA V Sbjct: 174 DPAGLARLDLRAPAYPAAAFPEGVNVEVVVPAPDGVAMRVFERGVGETASCGTGACAVAV 233 Query: 235 ASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 A + V V + GG L + W ++ V ++G A +G L W++ Sbjct: 234 AWAARNGDGPPAEVEVDLPGGRLTVGWRES-TVLLSGPAVLVSDGVLRP---DWLRAAGG 289 >gi|120602343|ref|YP_966743.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4] gi|120562572|gb|ABM28316.1| diaminopimelate epimerase [Desulfovibrio vulgaris DP4] Length = 282 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 23/285 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57 + + V F K+ G GN + ID R ++ D ++ D ++ + Q Sbjct: 4 KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D N DGS + CGN RC G A G + Sbjct: 64 HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLG---------FAGPRHAFGTDAGIVH 114 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + + + L R D + V+ G PHA+ F + + Sbjct: 115 A-VADVEAGYAKVELTRPRDLAAGTTLELEG----TPFTVHFVNTGVPHAVVFSD-SVDG 168 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 DL G L HP F G N + A + ++ LRT+ERGV T ACG+ A A+ Sbjct: 169 LDLRRLGAALRYHPRFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATAFI 228 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 + L T+ +V V+ GG L I+ ++ +F++G+A + + G++ Sbjct: 229 AHTLGLTDASVGVRTSGGEVLGIDI-EDGSIFLSGKAVRVFSGEM 272 >gi|47566972|ref|ZP_00237689.1| diaminopimelate epimerase [Bacillus cereus G9241] gi|47556290|gb|EAL14624.1| diaminopimelate epimerase [Bacillus cereus G9241] Length = 239 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 16/241 (6%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106 ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ Sbjct: 1 MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58 Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVS 161 A+ + +DMG P L IP+ + R+ F + F VS Sbjct: 59 TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVS 114 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV+ D+ L + G +L H MF E VN+ + + E ++ R WERG G+ Sbjct: 115 MGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173 Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVY 233 Query: 280 D 280 + Sbjct: 234 E 234 >gi|225677211|ref|ZP_03788204.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590735|gb|EEH11969.1| diaminopimelate epimerase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 262 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 140/266 (52%), Gaps = 19/266 (7%) Query: 7 DFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN ++ID R + + I S+ DQ+++I + D F+ Sbjct: 8 NFIKMHGTGNNFVIIDSRSTNNLDWNHRQIADQSS-----CDQVIIITMS--NAADCFMH 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124 I N DGS + CGN RCV + S + E + + D SI V+MG+P+ Sbjct: 61 IYNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPL 120 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPL+ D + P+ L++P V++GNPH +FFV+ ++ L + G Sbjct: 121 LKWHEIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-NISEIPLRNLG 173 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTN 243 L H +F +N+SIA+V + LR WERG G+TA+CGSAACA++VAS Sbjct: 174 PKLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGYLVA 233 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTG 269 + SV + GG LLIEW N+VFMTG Sbjct: 234 QQTSVNLPGGKLLIEWA--NNVFMTG 257 >gi|225387891|ref|ZP_03757655.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme DSM 15981] gi|225046018|gb|EEG56264.1| hypothetical protein CLOSTASPAR_01661 [Clostridium asparagiforme DSM 15981] Length = 286 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 14/279 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D + + L D ++ + + + N Sbjct: 7 KYHGLGNDYLVFDPNKNKLELNPHNVALLCNRNFGVGADGVL--EGPVLENDRISMVVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124 DGS + GNG+R ++L + F + + MG+ Sbjct: 65 PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFHIHTAGGQVSIHYLNEEGTRLKASMGKVS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ ++ + G + + +S+GNPH + ++ ++ + G Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYP----VTCLSIGNPHCVILMD-EISKDLVCRIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F E +N I +V + +ERG G T A GS CA+ A+ L T+ Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + V+M GG + +E ++ V +TG+ G + + + Sbjct: 240 KMLVQMPGGTMELEIEEDGTVLLTGDVGFV--GTMKLGS 276 >gi|42521005|ref|NP_966920.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410746|gb|AAS14854.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 263 Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 140/266 (52%), Gaps = 19/266 (7%) Query: 7 DFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +F KM G GN ++ID R + + I S+ DQ+++I + D F+ Sbjct: 9 NFIKMHGTGNNFVIIDSRSTNNLDWNHRQIADQSS-----CDQVIIITMS--NAADCFMH 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKENRDGSISVDMGEPI 124 I N DGS + CGN RCV + S + E + + D SI V+MG+P+ Sbjct: 62 IYNADGSRAEMCGNAARCVGYLIMSEKGAEYSIIELTSKRILECFKVGDKSIKVNMGKPL 121 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L W IPL+ D + P+ L++P V++GNPH +FFV+ ++ L + G Sbjct: 122 LKWHEIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-NISEIPLRNLG 174 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTN 243 L H +F +N+SIA+V + LR WERG G+TA+CGSAACA++VAS Sbjct: 175 PKLENHALFPRKINVSIAQVEKSGEIALRVWERGTGITASCGSAACAALVASTLRGSLVA 234 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTG 269 + SV + GG LLIEW N+VFMTG Sbjct: 235 QQTSVNLPGGKLLIEWA--NNVFMTG 258 >gi|46580276|ref|YP_011084.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. Hildenborough] gi|46449693|gb|AAS96343.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. Hildenborough] gi|311233742|gb|ADP86596.1| diaminopimelate epimerase [Desulfovibrio vulgaris RCH1] Length = 282 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 113/285 (39%), Gaps = 23/285 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIH-DFQD 57 + + V F K+ G GN + ID R ++ D ++ D ++ + Q Sbjct: 4 KKATVPFHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQG 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D N DGS + CGN RC G A G + Sbjct: 64 HEADYIWHFYNADGSRAEMCGNASRCAAVLAVDLG---------FAGPRHAFGTDAGIVH 114 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + + + L R D + V+ G PHA+ F + + Sbjct: 115 A-VADVEAGYAKVELTRPRDLAAGTTLELEG----TPFTVHFVNTGVPHAVVFSD-SVDG 168 Query: 178 YDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 DL G L HP F G N + A + ++ LRT+ERGV T ACG+ A A+ Sbjct: 169 LDLRRLGAALRYHPHFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATAFI 228 Query: 236 SGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 + L T+ +V V+ GG L I+ ++ +F++G+A + + G++ Sbjct: 229 AHTLGLTDASVGVRTSGGEVLGIDI-EDGSIFLSGKAVRVFSGEM 272 >gi|182415688|ref|YP_001820754.1| diaminopimelate epimerase [Opitutus terrae PB90-1] gi|177842902|gb|ACB77154.1| Diaminopimelate epimerase [Opitutus terrae PB90-1] Length = 286 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 11/281 (3%) Query: 6 VDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTD-DNTHFDQIMLIHDFQDASVD 61 + + K +GN +V+D R T D I + D +L + Sbjct: 1 MRYHKYHALGNDYIVLDPRDFPSWQPAPTIDQIRVVCHRNFGVGSDG-ILWGPLPSKQSE 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCV--VRFLTSRMKRKSFTFETIRGILVAKENRDGS-ISV 118 +RI N DGSE + GNG+R + ++ +FT ET G + + +G I+V Sbjct: 60 FGLRIFNPDGSEAEKSGNGLRIFSRFLWDQKLVRAPAFTVETPGGNVESVIKENGRLITV 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG D IP+ + R+ + ++GNPH + + ++ Sbjct: 120 AMGRVSFDSAKIPVNLAG--AAREVINEKLTVLDREFTYCAATIGNPHCVIPL-AEISPE 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 +G + HP F N+ RV +++ L WERG G T A GS++ A+ + Sbjct: 177 IAHRYGPAIETHPNFPRKTNVQFLRVRDRQNIQLEIWERGAGYTLASGSSSSAAAAVAHR 236 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L +R V+V M GG + IE + + MTG K EG + Sbjct: 237 LGLVDRNVTVHMPGGTIGIEIGGDFSIMMTGTVNKVAEGTM 277 >gi|239627684|ref|ZP_04670715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517830|gb|EEQ57696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 286 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 14/277 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D + + + D ++ + + + N Sbjct: 7 KYHGLGNDYLVYDPNKNEMKLNPSNVQLMCNRNFGVGADGVL--EGPVISEDRISMVVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124 DGS + GNG+R ++L + F A + + MG Sbjct: 65 PDGSIAEKSGNGVRIFAKYLKDAGYVQKKDFTIYSSGGEAAIHYLNEEGTRLKASMGRAS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ ++ + G + + +S+GNPH + ++ ++ + G Sbjct: 125 FWSSDVPVEGPRREIINETMVFGRIPYP----VTCLSVGNPHCVILMD-EISKDLVCRIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F E +N I +V + +ERG G T A GS CA+ A+ L T+ Sbjct: 180 KYSEGARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V+M GG L IE ++ V MTG+ G + + Sbjct: 240 KMVVQMPGGTLEIEIDEDGVVHMTGDVGYV--GTMKL 274 >gi|222098388|ref|YP_002532446.1| diaminopimelate epimerase [Bacillus cereus Q1] gi|221242447|gb|ACM15157.1| diaminopimelate epimerase [Bacillus cereus Q1] Length = 239 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 16/241 (6%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGIL 106 ++LI A V +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ Sbjct: 1 MILICPSDVAPV--KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIV 58 Query: 107 VAKENRDGS----ISVDMGEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVS 161 A+ + +DMG P L IP+ + R+ F + F VS Sbjct: 59 TAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVS 114 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPHA+ FV+ D+ L + G +L H MF E VN+ + + E ++ R WERG G+ Sbjct: 115 MGNPHAVIFVD-DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 173 Query: 222 TAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T ACG+ ACA+VVAS K R ++V + GG L+I W + +V M G A+ G Sbjct: 174 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICHGVY 233 Query: 280 D 280 + Sbjct: 234 E 234 >gi|218778272|ref|YP_002429590.1| diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01] gi|218759656|gb|ACL02122.1| Diaminopimelate epimerase [Desulfatibacillum alkenivorans AK-01] Length = 278 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 32/295 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 + F KM G GN ++ D R ++ A + + D ++L+ + D Sbjct: 4 LQFYKMSGSGNDFIIADNRDGKIAKDDMPGLAKALCARKISIGADGLVLVENSD--QCDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 + N DGSE + CGN RCV RF +++ + TFET+ G++ A+ + Sbjct: 62 KWQFYNSDGSEAEMCGNASRCVARFAYLNKIAGEKMTFETLAGVIHAEVLGET------- 114 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + ++ N ++ G PH + V ++ D+ Sbjct: 115 ----------VKAGLTDPTDVKYFYALDVDGTTCNVTSMNTGVPHVVLLVG-NIEKPDVE 163 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCL 239 G + H F G N++ L +RT+ERGV T ACG+ A A+ +A Sbjct: 164 ELGRKIRYHEAFAPAGTNVNFVEFR-RGELAVRTYERGVEGETLACGTGAVAAALARVAA 222 Query: 240 HKTNRAVSVKML-GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 V V GG L + + ++F+ G+A + G++ K +K Sbjct: 223 DAALSPVKVLTRSGGYLYVHYKRVPGGYGNIFLEGDANIIYTGEIGPDALKLAQK 277 >gi|291536434|emb|CBL09546.1| diaminopimelate epimerase [Roseburia intestinalis M50/1] Length = 281 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 14/279 (5%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN L+ D + + I L + D I+ +RI N Sbjct: 8 KYHGVGNDYLIFDPKKNDVVLNERLIRQLCRRNIGVGADGILY--GPVMEDKKIKVRIFN 65 Query: 69 CDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAK-ENRDG-SISVDMGEPI 124 DGSE + GNG+R R+ +K + + T G + + G + VDMG + Sbjct: 66 PDGSEAEKSGNGIRIFSRYLKDAGYVKERQYYLTTKAGETLVTFLDDAGSCMRVDMGYAV 125 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + IP ++ + N VSMGNP+ + +E + G Sbjct: 126 FEAEQIPALGFEGEVVGESIFFCDN----FYNATCVSMGNPNCVIMLER-VDREKALHLG 180 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + F +N+ + ++ +++ + +ERG G T A G+ ACA+ AS L Sbjct: 181 PYVENAKYFPNRINMQLCQIVDEKNIQVEIYERGAGYTFASGTGACAAAAASHRLGLVED 240 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 AV+V M GG L IE+ + +FMTG + GK+ + Sbjct: 241 AVTVHMHGGDLFIEFEKDGRIFMTGSV--VYIGKITVAE 277 >gi|299136521|ref|ZP_07029704.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8] gi|298601036|gb|EFI57191.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX8] Length = 271 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 67/279 (24%), Positives = 118/279 (42%), Gaps = 18/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN LVI+ R S A + + D I + + A F+R Sbjct: 4 IGFVKAHACGNDFLVIEEREAKGKHASMAQKLCARNTGIGADGIEFLD--RRADGSFFLR 61 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DGSE + GNG RCV +L + R+ T GI + + + Sbjct: 62 LFNADGSEAELSGNGTRCVAAWLAASEGRQEVALGTHGGIRTCRLIERKGAEWWIESAMG 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---YHYDLAS 182 +++P A ++ + +V++GNPH + F + + + Sbjct: 122 VPRVMPRAIEIAGVN------------GVIEGAMVNVGNPHYVIFPDSEDFSSHGMSWQE 169 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ P+F G N+ RV + + ++ R +ERG G T + G+ CAS A+ L Sbjct: 170 LGAKISVDPLFKFGTNVEFVRVLAQDQIEFRIYERGCGPTTSSGTGTCASSSAAMTLRAV 229 Query: 243 NRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLD 280 R ++ GG + W D + + +TG A+ +G+++ Sbjct: 230 ARELAAVAQGGTQRVVWRDSTSEMMLTGPAEIICKGEVE 268 >gi|322833366|ref|YP_004213393.1| diaminopimelate epimerase [Rahnella sp. Y9602] gi|321168567|gb|ADW74266.1| diaminopimelate epimerase [Rahnella sp. Y9602] Length = 279 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 16/281 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDA- 62 M+ F + G+GN LV R +++ I + D +++ + D Sbjct: 1 MI-FHRYHGLGNDYLVCHHRVAAL-LSNQQIRRICDRHYGIGSDGLLI----DNDDADIP 54 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKE-NRDGSISVD 119 +RIIN DGSE + GNG+R R+L R+ + F T G + + + + VD Sbjct: 55 SLRIINPDGSEAEKSGNGLRIYARYLFDIGRVAHEPFLVNTPGGHVRCEVTDGAHQVIVD 114 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG+ +P + D+ G N + +VSMGNPH + V+ L Sbjct: 115 MGQAKFSPAALPASVESDEALALPIVAGGHN----LSATLVSMGNPHCVIRVDK-LDLDL 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G+ + +F + N+ A+V ++ + WERG G T A GS++CA+ A L Sbjct: 170 VKQLGSEIETLAIFPKRTNVQFAQVLDRNNISIGIWERGAGYTLASGSSSCAAASAMRKL 229 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V+V+M GG L I + + V M G +K LD Sbjct: 230 GLVDDHVTVQMPGGKLAISFSGDFQVNMRGPVQKIAIITLD 270 >gi|94502344|ref|ZP_01308814.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833844|ref|YP_001598040.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS] gi|94451099|gb|EAT14054.1| diaminopimelate epimerase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206334|gb|ABS30644.1| diaminopimelate epimerase [Candidatus Sulcia muelleri GWSS] Length = 261 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 106/283 (37%), Gaps = 34/283 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K + GN ++I+ ++ I + + D I+LI + D +++ Sbjct: 5 FLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDFYMKY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG E CGNG RC V F + + S+ L+ Sbjct: 63 YNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFK------TIDGSHYASITKNIVSLN 116 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K I L + ++ G+PH I F+++ Y + Sbjct: 117 MKNIELVE------------------VYKKHICINTGSPHHILFIDNKNYINVYNKGIKI 158 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG-CLHKTNR 244 +GVN++ + L++RT+ERGV T +CG+ AS +A+ Sbjct: 159 RFNQKYIKKGVNVNFVK-VKKHILNVRTYERGVENETLSCGTGVTASAIAAYNIKKLLYN 217 Query: 245 AVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIKT 283 + V+ LGG L +++ +F+ GE ++G L + Sbjct: 218 KIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKLPA 260 >gi|225630874|ref|YP_002727665.1| diaminopimelate epimerase [Wolbachia sp. wRi] gi|254767123|sp|C0R4N2|DAPF_WOLWR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225592855|gb|ACN95874.1| diaminopimelate epimerase [Wolbachia sp. wRi] Length = 262 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID C N + ++ + DQ+++I + A D F+ I Sbjct: 8 NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 61 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ + CGN RCV L S + T E + IL + D SI V+MG+P+L Sbjct: 62 YNADGSKAEMCGNAARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLL 121 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + P+ L++P V++GNPH +FFV+ + L S G Sbjct: 122 KWHKIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-SVNEIPLQSLGP 174 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244 L H +F + +N+SIA+V + LR WERG G+TA+CGSAACA++V S T + Sbjct: 175 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 234 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269 SV + GG LLIEW N+VFMTG Sbjct: 235 QTSVNLPGGKLLIEWA--NNVFMTG 257 >gi|319651129|ref|ZP_08005262.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2] gi|317397183|gb|EFV77888.1| diaminopimelate epimerase [Bacillus sp. 2_A_57_CT2] Length = 327 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 116/291 (39%), Gaps = 19/291 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTD-DNTHFDQIMLIHDFQDASV 60 ++ K G GN +ID N T + A+ D I+ + + A Sbjct: 3 IELLKCHGSGNDFFIIDEISHTYNFTEENRAELAKAICDRSTELGADGILFVLKSEKA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS----- 115 DA +R+ N DGSE CGNG+RCV R++ + K ET++ L K+ D Sbjct: 61 DARMRVFNPDGSEASMCGNGLRCVARYVCELLGLKEAIIETMKADLQVKKQEDIFEDIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ D K +PL D + ++ ++ V + +I E Sbjct: 121 YLVEISPVSFDLKDLPLVLDKDTIINEKVS--GISEELAFTALAVPNPHFVSIVEKEQIT 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 L + F +GVN+S + + +RT+ERGVG T ACG+A AS + Sbjct: 179 SDLQKKISEYLNGPNDFFPDGVNVSFVKPLKKGHIYVRTFERGVGFTNACGTAMSASTLV 238 Query: 236 SGCLHK--TNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDI 281 + V V GG + H+ N + + G A + + +I Sbjct: 239 TCMNGLNKIEEPVEVYNNGGKVRCVVHEKNGRQSIDLIGNASYVYRCEAEI 289 >gi|311896661|dbj|BAJ29069.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 291 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 99/287 (34%), Gaps = 22/287 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD---- 57 + + F K G N L++ +T + AL D ++L+ Sbjct: 2 TRTLTFTKGHGTENDFLLVPDPDAELGLTPADVIALCDRQAGIGADGLLLVTRSAAHPDA 61 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + F+ N DG+ Q CGNG+R R+L + + T +A + Sbjct: 62 ADMADEAEWFMDYRNPDGTTAQMCGNGIRLFARYLLETGRARPGTV------PIATRSGV 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + + P D P I + V +GNPHA+ V+ Sbjct: 116 RQVHI----PGGDPDGHPTVAMGRPAFPGPDGIKVTANGRTWPALHVDVGNPHAVVQVD- 170 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 DL + + EGV + L LR ERG G T +CG+ A A+V Sbjct: 171 DLADPGDLRTPPTVEPAGAYPEGVTVDFVTTRGPAHLALRVHERGAGETRSCGTGAVAAV 230 Query: 234 VASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 A +V + GG L ++ + + ++G A G Sbjct: 231 AAVLHREPGVPTGRYTVDVAGGSLAVDVAPDGDMHLSGPAVLVATGT 277 >gi|254669724|emb|CBA03885.1| Diaminopimelate epimerase [Neisseria meningitidis alpha153] Length = 217 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 74/215 (34%), Positives = 109/215 (50%), Gaps = 6/215 (2%) Query: 69 CDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 + CGNG RC RF+ + +K ET G++ K + +G ++V+MG+P Sbjct: 2 PTAARSGQCGNGARCFARFVADKGLTGKKEICVETANGVIFPKLSDNGMVTVNMGKPKFM 61 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 IP + D D G ++ V+MGNPHA+ V+ D+ + G+L Sbjct: 62 PSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPHAVIVVD-DVECAPVRETGSL 119 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN--R 244 + H F E VN+ +V ++ LR +ERGVG T ACG+ ACA+VVA L + + Sbjct: 120 IEPHRQFPERVNVGFMQVVGRTAIRLRVFERGVGETQACGTGACAAVVAGIRLGLLDEGK 179 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V + GG L IEW V MTG A+ +EG+L Sbjct: 180 TVEVILPGGTLYIEWACGGDVMMTGPAETVFEGEL 214 >gi|258654107|ref|YP_003203263.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233] gi|258557332|gb|ACV80274.1| diaminopimelate epimerase [Nakamurella multipartita DSM 44233] Length = 281 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 100/280 (35%), Gaps = 25/280 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K G N +++ R ++T + + AL D ++ + DA F+ Sbjct: 16 FLKGHGTENDFVLLPDRADELDLTENRVRALCDRRAGLGGDGVIRVVP--DADGGFFMDY 73 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPI 124 N DGS Q CGNG R R++ F T G VA G +S++MG Sbjct: 74 RNADGSLAQMCGNGARLFARYMVDAGWAAPGRIPFRTRGGPRVAHVQTSGDVSIEMGPAT 133 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L V +GNPH + D Sbjct: 134 LG-----------------VASRAAIGDAAFAGIAVDVGNPHLVCLDIGDRSTLAALDLS 176 Query: 185 NLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHKT 242 + P +F +GVN+ + +R ERGVG T +CG+ + +T Sbjct: 177 HAPEFDPQVFPDGVNIEFVTAQGPGEVAMRVHERGVGETRSCGTGTVAVAAATLAAAGRT 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V V + GG + ++ +TG A +G+++ + Sbjct: 237 QGRVLVNVPGGQVTVDIAPGTS-MLTGPAVIVAQGRVEPQ 275 >gi|313837162|gb|EFS74876.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA2] gi|314927816|gb|EFS91647.1| diaminopimelate epimerase [Propionibacterium acnes HL044PA1] gi|314971935|gb|EFT16033.1| diaminopimelate epimerase [Propionibacterium acnes HL037PA3] gi|328907280|gb|EGG27046.1| diaminopimelate epimerase [Propionibacterium sp. P08] Length = 274 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 105/290 (36%), Gaps = 31/290 (10%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIML------IHDFQDAS 59 F K G GN +++D HD +T + + L D + + D+ Sbjct: 4 KFWKGHGTGNDFVIVDR---HDPLTPEQVRWLCHRRFGIGADGTLQALRARDVEDWNGDP 60 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDGSIS 117 F+ N DG+ + CGNG+R R+L + T G+ + + DG IS Sbjct: 61 DLWFMDYRNADGTIAEMCGNGLRVFARYLVQAGHMMTAEADIATRAGVRHVRLHDDGDIS 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 V MG ++ + + + +G NP V + + + + D Sbjct: 121 VTMGTVRIEPDDVTIEHQDTWWSACKVDVG--------NPHAVVVTDHTTVSGINLD--- 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 F +GVN+ ++ +R ERG G T +CG+ A Sbjct: 170 -----DSPTWQPRSAFPDGVNVEFVEQIDQHTVAMRVHERGSGETMSCGTGTVAVAATMA 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIKTG 284 + +V + GG +++ D +TG A G++D+ G Sbjct: 225 ARTRHRGPWTVYVPGGQVVVTLSPSDDGYQAVLTGPAVILAAGQVDLPNG 274 >gi|160880469|ref|YP_001559437.1| diaminopimelate epimerase [Clostridium phytofermentans ISDg] gi|160429135|gb|ABX42698.1| Diaminopimelate epimerase [Clostridium phytofermentans ISDg] Length = 282 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 12/266 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G GN LV D + + I + D I++ + ++RI Sbjct: 5 FEKYHGNGNDYLVFDTKKFEYELQGSQIREICDRHFGVGSDGILM--GPYEKEDGIYVRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR----DGSISVDMGE 122 N DGSE + GNG+ +FL + + +G+++V MG+ Sbjct: 63 FNPDGSEAEKSGNGISIFAQFLKDHKYVTEDVITINTLGGPIEIHYINDKNGTLNVAMGK 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 IP+ ++ + + +++GNPH + ++ + + S Sbjct: 123 VSYMSDEIPVTGESREVIEEAMEFQGQKVIT----TCLTIGNPHCVIIRDELVKKE-VKS 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G ++ F +N+ +V + E + + +ERG G T + GS++CA+ + L T Sbjct: 178 LGKIIESDEHFPNKINVQFMQVLNREEIVIEIYERGAGYTLSSGSSSCAAANVAYKLGLT 237 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMT 268 +R V V M GG + +E ++ FMT Sbjct: 238 DRKVKVHMPGGTVEVEIEEDGMTFMT 263 >gi|58698204|ref|ZP_00373125.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila ananassae] gi|58535285|gb|EAL59363.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila ananassae] Length = 263 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 102/265 (38%), Positives = 145/265 (54%), Gaps = 17/265 (6%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 +F KM G GN ++ID C N + ++ + DQ+++I + A D F+ I Sbjct: 9 NFIKMHGTGNNFVIID--SCSANDLNWNYKKIANQN--GCDQVIVITNSSLA--DCFMHI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ + CGN RCV L S + T E + IL + D SI V+MG+P+L Sbjct: 63 YNADGSKAEMCGNAARCVGYLLMSEKGTEHITIELVNKRILECFKVGDKSIKVNMGKPLL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 W IPL+ D + P+ L++P V++GNPH +FFV+ + L S G Sbjct: 123 KWHKIPLSTECDTL------HLPIELEMLKDPVAVNIGNPHIVFFVD-SVNEIPLQSLGP 175 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNR 244 L H +F + +N+SIA+V + LR WERG G+TA+CGSAACA++V S T + Sbjct: 176 KLENHALFPQKINISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQ 235 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTG 269 SV + GG LLIEW N+VFMTG Sbjct: 236 QTSVNLPGGKLLIEWA--NNVFMTG 258 >gi|210617939|ref|ZP_03291825.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787] gi|210149078|gb|EEA80087.1| hypothetical protein CLONEX_04057 [Clostridium nexile DSM 1787] Length = 285 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 112/270 (41%), Gaps = 12/270 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D + + + L + + I+ + +RI N Sbjct: 7 KYHGLGNDYLVFDPNKNEMELNEENVRLLCDRNYGIGAEGIL--EGPVFETEQMGVRIWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124 DGS+ + GNG R ++L + F + I + +G+ Sbjct: 65 PDGSKAEMSGNGDRIFAKYLKDAGYVQKRNFHFQTPGGEIEVFYLNEDGSRIRLSVGKAS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 IP+ ++ + G + VS+GNPH + ++ ++ + + G Sbjct: 125 FWSDEIPVTGERREVVDEDMVFGRNLYPT----TCVSVGNPHCVIPMK-EVSKHLVCKIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 N F +N + +V E++ + +ERGVG T A GS+ACA+ A+ L TN Sbjct: 180 NHSEIARYFPNKINTQVMQVIDEENIRIEIFERGVGYTLASGSSACAAAAAAYKLGLTNP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 V+V M GG L +E ++ +F+TGE Sbjct: 240 GVTVHMPGGELQVEIQEDWEIFVTGEVFYI 269 >gi|325263682|ref|ZP_08130416.1| diaminopimelate epimerase [Clostridium sp. D5] gi|324031391|gb|EGB92672.1| diaminopimelate epimerase [Clostridium sp. D5] Length = 285 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 15/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + + G+GN LV D + L + D I+ + Sbjct: 3 ITLERYHGLGNDYLVYDPNKNELELNKANAEMLCNRNMGLGSDGIL--EGPFIGEKHMSL 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDM 120 RI N DGS + GNG+R ++L + ++ + + + + + M Sbjct: 61 RIWNPDGSVAEKSGNGVRIFAKYLKDAGYVQKKNYKLVTDGGLVEITYLNEDGSRLRISM 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ +P+ ++ + G L VS+GNPH + + ++ + Sbjct: 121 GKLSFWSDEVPVTGERREVINEDMVFG----RTLYPVTCVSVGNPHCVIPMR-EISQPLV 175 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 GN F E +N I +V ++ + T+ERG G T A G+ ACA+ + L Sbjct: 176 CKIGNYSEVARYFPERINTEIMKVIDNNNIAIETFERGAGYTMATGTGACAAAGVAHKLG 235 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 T V V M GG L +E +N V+MTGE + L + ++++K Sbjct: 236 MTGNKVVVHMPGGELQVEIDENWEVYMTGEVFYVAKIDL---SNEFVEK 281 >gi|269795603|ref|YP_003315058.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542] gi|269097788|gb|ACZ22224.1| diaminopimelate epimerase [Sanguibacter keddieii DSM 10542] Length = 313 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 111/303 (36%), Gaps = 30/303 (9%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ----- 56 ++ + FAK G N +++D R ++T + + AL+ D ++ + Sbjct: 8 TTPLPFAKGHGTENDFVLLDDREARLDLTPELVRALADRRAGVGGDGVIRVVPSSALAEG 67 Query: 57 ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGI 105 + + F+ N DGS Q CGNG+R +L + T G Sbjct: 68 RAVLAHEPAAHWFMDYRNADGSVAQMCGNGVRVFAAYLEELGLATFADGRELVLGTRAGA 127 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 ++ G +VDMG + FD P R V +GNP Sbjct: 128 RRVRKEDSGWYAVDMGVWSFPGGDAAVRDGFDAEVTVSGL-EPAGTQVPRPALSVDLGNP 186 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---------ESLDLRTWE 216 H + + L D A P+ +EG N+ + + +R E Sbjct: 187 HTVVAL-ASLDDLDRADLHTAPDVLPLPAEGTNVELVVPLGEETSVDGTVVGRVRMRVHE 245 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 RGVG T +CG+ ACA+ +A V + GG + + ++ HV + G A Sbjct: 246 RGVGETRSCGTGACAAALAVRAWAGAGAPDVWLVDVPGGTVRVTLLEDGHVELAGPAVLV 305 Query: 275 WEG 277 +G Sbjct: 306 ADG 308 >gi|325294638|ref|YP_004281152.1| diaminopimelate epimerase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065086|gb|ADY73093.1| Diaminopimelate epimerase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 270 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 35/286 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN------ITSDAINALSTDD-NTHFDQIMLIHDFQDA 58 + F+K++G GN ++ID R A+ + D ++LI + + A Sbjct: 3 LRFSKLQGTGNDFVIIDNRNKGFEKFIDNLPIKKAVQKICQRKTGVGADGLILIENSEIA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSIS 117 D + N DGS + CGNG RCV RF + + FET+ GI+ A+ N Sbjct: 63 --DFKWQFFNSDGSTAEMCGNGARCVARFAFQKGIAPQKMKFETLAGIIEAEVNVSTV-- 118 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + L + D ++ + ++ G PH + FV+ + Sbjct: 119 -----------KVKLTKPHDLK--------LNLNVEGVSGHFINTGVPHFVVFVDR-IED 158 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 ++ G + +F L+ + +RT+ERGV T ACG+ + AS + S Sbjct: 159 VNVREVGRKIRFSELFQPSGTNVNFVEAQLDKIFVRTYERGVEDETLACGTGSVASALIS 218 Query: 237 GCLHKTNRAVSVKMLGGG-LLIEWHDN-NHVFMTGEAKKEWEGKLD 280 G + K N + V L + + N N VF+ G ++G L+ Sbjct: 219 GKVFKMNSPIEVVTKNRERLKVYFDKNMNDVFLEGATTWVYDGFLN 264 >gi|206576941|ref|YP_002238279.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|290509319|ref|ZP_06548690.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] gi|206565999|gb|ACI07775.1| putative diaminopimelate epimerase [Klebsiella pneumoniae 342] gi|289778713|gb|EFD86710.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55] Length = 288 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 78/279 (27%), Positives = 120/279 (43%), Gaps = 13/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K G+GN LV R + ++++ I L D +++ ++ + Sbjct: 4 LHFHKYHGLGNDYLVC-HRDVAEQLSNEHIQMLCHRHYGVGSDGLLI---DSGDQINPTL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN-RDGSISVDMG 121 RIIN DGSE + GNG+R R+L R+ + F T G + + ISVDMG Sbjct: 60 RIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVDMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P + + + + +VSMGNPH + V+ L + Sbjct: 120 RANFNPAALPALVNLPEAVNYPLPLAD----ETLSVVLVSMGNPHCVVLVDK-LDLAQVH 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H +F + N+ V +L + WERG G T A GS++CA+ A L K Sbjct: 175 RLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRLGK 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V V M GG L I + + V M G K LD Sbjct: 235 VDDRVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273 >gi|85857916|ref|YP_460118.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] gi|85721007|gb|ABC75950.1| diaminopimelate epimerase [Syntrophus aciditrophicus SB] Length = 277 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 132/302 (43%), Gaps = 38/302 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV 60 M++F KM G GN ++ID R + A+ + D ++L+ Sbjct: 1 MIEFFKMSGSGNDFILIDNREGALSSIKNIPSFVEAICRRKVSVGADGVILVERS--PRA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVD 119 D R N DGSEV+ CGNG RCV RF + + +FET+ G++ A+ R + + Sbjct: 59 DFQWRFFNADGSEVEMCGNGGRCVARFAYLKGIAGERMSFETVAGLIDAEL-RGDDVKLR 117 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + EP P+ + + D + G PH + FVE +L +D Sbjct: 118 LTEPSSLQANQPIPVGDEILTVDSL----------------NTGVPHVVAFVE-ELGGFD 160 Query: 180 LASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 + +G L G N + VTSL SL +RT+ERGV T ACG+ + AS +A+ Sbjct: 161 VFRYGRALRYAEAFQPAGTNANFVTVTSLHSLSVRTYERGVEDETLACGTGSVASALAAA 220 Query: 238 CLHKTNRAVSVKMLGGG-LLIEWHD-NN---HVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 V V + G L I + + +V+M G + +EG+L W + ++ Sbjct: 221 ARGLVESPVEVTVRSGERLKIHFERIDGAFRNVYMEGRVRVIYEGRL------WEEAWQE 274 Query: 293 DE 294 + Sbjct: 275 NG 276 >gi|322436409|ref|YP_004218621.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9] gi|321164136|gb|ADW69841.1| diaminopimelate epimerase [Acidobacterium sp. MP5ACTX9] Length = 266 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 27/283 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K GN L+I+ A S + + D I + + A F+ Sbjct: 1 MISFVKAHACGNDFLIIEEAVAGRRHAELAQKLCSRNTSVGADGIEFLE--RRADGSFFL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDM 120 R+ N DGSE + GNG RCV +L T G+ + I M Sbjct: 59 RLFNADGSEAELSGNGTRCVAAWLAQSEGLNEVALGTHGGVRTCRVISSDGPVFQIESGM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL---YH 177 G P + + I L + + +V++GNPH + FV+ D + Sbjct: 119 GVPRVMRRAIEL-----------------EGVGVVEGAMVNVGNPHYVLFVDTDDFGSHG 161 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 G +A P+F G N+ +V S + ++ R +ERG G T + G+ CAS A+ Sbjct: 162 MTWQELGGKIAVSPLFPHGTNVEFVKVKSADEIEFRIFERGCGPTTSSGTGTCASSSAAI 221 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFM-TGEAKKEWEGKL 279 L R+++ GG + W N M TG A+ G++ Sbjct: 222 ALRDCARSLTAVAEGGAQSVVWPSNGEAMMLTGPAEFVCVGEV 264 >gi|160937942|ref|ZP_02085300.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC BAA-613] gi|158439168|gb|EDP16922.1| hypothetical protein CLOBOL_02836 [Clostridium bolteae ATCC BAA-613] Length = 286 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 100/270 (37%), Gaps = 12/270 (4%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G+GN LV D +T + + D I+ + + N Sbjct: 7 KYHGLGNDYLVYDPNKNKLKLTPSNVQLMCNRNFGVGADGIL--EGPVLDGEQISMVVWN 64 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG----SISVDMGEPI 124 DGS Q GNG+R ++L + F A + + MG+ Sbjct: 65 PDGSVAQKSGNGVRIFAKYLKDAGYVQKKDFTISSQGGEASIHYLNEEGTRLKASMGKVS 124 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +P+ ++ + G + + +S+GNPH + ++ ++ + G Sbjct: 125 FWSDDVPVEGPRREIINETMVFGRIPYP----VTCLSIGNPHCVILMD-EISKDLVCRIG 179 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F E +N I +V + +ERG G T A GS CA+ A+ L T+ Sbjct: 180 RYSESARQFPEKINTQIMKVLDRTHIQTEVYERGAGYTLASGSGCCAAAAAAYRLGLTDP 239 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + V+M GG L +E V MTG+ Sbjct: 240 KMFVQMPGGTLELEIDGEGVVHMTGDVGYV 269 >gi|270260895|ref|ZP_06189168.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13] gi|270044379|gb|EFA17470.1| diaminopimelate epimerase 1 [Serratia odorifera 4Rx13] Length = 317 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 13/277 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN LV ++++ I L D +++ +++ +RI Sbjct: 33 FHKYHGLGNDYLVC-HHSVAARLSNEQIRILCHPHYGIGSDGLLI---DSGDNINPTLRI 88 Query: 67 INCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKENRDGS-ISVDMGEP 123 IN DGSE + GNG+R R+L R+ F T G + + + D + VDMG Sbjct: 89 INPDGSEAEKSGNGLRIYARYLFDIGRVGHLPFLVHTAGGDVQCQVDEDKHRVRVDMGRA 148 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + +P + + + +VSMGNPH + V L + Sbjct: 149 NFNPAALPALIDLP----EALNYPLALAEETLSVSLVSMGNPHCVVPVTR-LDLAQVHRL 203 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 G + HP+F + N+ + V ++L + WERG G T A GS++CA+ L++ + Sbjct: 204 GPQIENHPLFPKRTNVQLVEVIDRQTLRIGIWERGAGFTLASGSSSCAAASVMRKLNRVD 263 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 VSV+M GG L I + + HV M G K LD Sbjct: 264 DNVSVQMPGGQLQISFSGDFHVRMRGPVHKIASLTLD 300 >gi|256370805|ref|YP_003108630.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM] gi|256009597|gb|ACU52957.1| diaminopimelate epimerase [Candidatus Sulcia muelleri SMDSEM] Length = 263 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 38/285 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K + GN ++I+ ++ I L + D ++LI + + D +++ Sbjct: 5 FFKYQATGNDFIIINNLCKQFSLKEKIIQRLCNRNLGIGADGLILIEKIK--NYDFYMKY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DG E CGNG RC V F +K+ F+TI G A N+ Sbjct: 63 YNSDGKEGSMCGNGGRCSVHFAKKIGVLHKKNTLFKTIDGYHYATINK------------ 110 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLAS 182 + + + ++ + + ++ G+PH I F++ +++ Sbjct: 111 ------------NIVSINMTNVEFLTVEVDSDSIFLNTGSPHHIIFIKKIENINRNINIK 158 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 L + GVN++ + + +RT+ERGV T +CG+ ASV+A+ K Sbjct: 159 GRKLQSSKKYLKTGVNVNFVQ-INKHIFYVRTYERGVENETLSCGTGVTASVIAAYHKKK 217 Query: 242 TNRAVS-VKMLGGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281 VK GG L +++ +F+ GE ++G + I Sbjct: 218 IFFKKILVKTRGGLLQVKFDTLLQSYKRIFLKGEVNFVYKGVIKI 262 >gi|325280263|ref|YP_004252805.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712] gi|324312072|gb|ADY32625.1| Diaminopimelate epimerase [Odoribacter splanchnicus DSM 20712] Length = 267 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 102/285 (35%), Gaps = 38/285 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAF 63 ++ F K +G GN ++ID R T + + D +ML+ D Sbjct: 2 IIKFQKFQGAGNDFIIIDNRNQVYEFTREIVEYFCDRKFGIGADGLMLLETC--PGYDFK 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGE 122 +R N DG E CGNG RC+V + T F G + G Sbjct: 60 MRYFNSDGREASLCGNGSRCIVAYAHRLGLFLQTTRFLAADGEHQGEITLQGVRVKMN-- 117 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + F + G+PH + V D + + Sbjct: 118 ------------------------DVSRITVTPDYFFLDTGSPHYVKVVADAFQTDVVTA 153 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAAC-ASVVASGCLH 240 + G N++ T + + T+ERGV T ACG+ A++ A+ H Sbjct: 154 GRMIRYAPSFQPGGTNVNFITPT-PACIRIATYERGVEDETLACGTGCVAAALSAALLNH 212 Query: 241 KTNRAVSVKMLGGGLLIEWHD--NNH---VFMTGEAKKEWEGKLD 280 + +++ GG L + + +NH +++ G A+ + G+++ Sbjct: 213 DHSGTYTLQTKGGILKVSFKQLADNHFTDIWLEGPAEFVFAGEIE 257 >gi|190571354|ref|YP_001975712.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357626|emb|CAQ55067.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 264 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 94/270 (34%), Positives = 138/270 (51%), Gaps = 19/270 (7%) Query: 3 SSMVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 + + F KM G GN ++ID R + + I + DQ+++I + + Sbjct: 6 TDKIPFVKMHGTGNSFVIIDSRSANNLDWNYRQIADQGS-----CDQVIIITMS--NAAN 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDM 120 F+ I N DGS + CGN RCV + + T E IL + D SI V+M Sbjct: 59 CFMHIYNADGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNM 118 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+P+L W IPL+ D + P+ L+ P V++GNPH +FFV+ ++ L Sbjct: 119 GKPLLKWNEIPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFVD-NISEIPL 171 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + G L H +F + N+SIA++ ++LR WERG G+TA+CGSAACA+ VAS Sbjct: 172 QNLGPKLENHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRK 231 Query: 241 -KTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 + SV + GG LLIEW N + MTG Sbjct: 232 CLATKQTSVHLPGGHLLIEWSKN--ILMTG 259 >gi|330752001|emb|CBL80514.1| diaminopimelate epimerase [uncultured Polaribacter sp.] Length = 256 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 108/284 (38%), Gaps = 40/284 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITS-DAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 +F K +G GN +++D R + + I+ L D ++LI + D D + Sbjct: 4 NFYKYQGTGNDFIMVDNRAEIFPKENMEIISNLCNRYFGIGADGVILIEN--DIKHDFKM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEP 123 N DGS+ CGNG RC V F K+ T F + G A+ + Sbjct: 62 IYFNADGSQT-FCGNGGRCAVAFARYLNIIKNKTNFIAVDGPHFAEIKNN---------- 110 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 I + N G H + V+ L +Y + Sbjct: 111 ----------------IVSLKMIDVDDIRIQENSVFAYTGTQHHVEMVD-SLDNYPVYEK 153 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 G + + G N++ + + +RT+E+GV T ACG+ A +A KT Sbjct: 154 GKQIR-ASYDAPGSNVNFVEQINNNTFRVRTYEKGVEGETLACGTGVTAVAIAMHKTKKT 212 Query: 243 NRA-VSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + + + GG L + + + N V++ G A ++G++ I Sbjct: 213 TSNLIYLPVEGGVLEVSFTEENGNYKDVYLLGSATFVFKGEIQI 256 >gi|238063468|ref|ZP_04608177.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] gi|237885279|gb|EEP74107.1| diaminopimelate epimerase [Micromonospora sp. ATCC 39149] Length = 283 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 102/289 (35%), Gaps = 30/289 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58 ++F K G GN +++ +T + AL D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGALELTPGLVAALCDRRRGLGADGVLRVVRAAKHPEGAGQ 60 Query: 59 --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS + CGNG R VR+L G ++ R G + Sbjct: 61 AGEAEWFMDYWNADGSFAEMCGNGARVFVRYLVETG------LAVPEGAALSVATRAGVV 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 ++ + I + + R V +GNPH + + L Sbjct: 115 RA-----LVAGEAISVEV---RRPRVYATSTAALGGLTLAGSAVDVGNPHLVCALPAGLE 166 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACA 231 L +F GVN+ + +R +ERG T +CG+ ACA Sbjct: 167 LGALDLTRAPGFDPAVFPAGVNVEFTAPGGPVDGTDGHVLMRVYERGSAETLSCGTGACA 226 Query: 232 -SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + VA + V+V + GG L + D+ ++ G A G L Sbjct: 227 VAAVALHDAGRNTGTVAVDLPGGRLTVTMTDD-SCWLAGPALLVASGTL 274 >gi|325962849|ref|YP_004240755.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3] gi|323468936|gb|ADX72621.1| diaminopimelate epimerase [Arthrobacter phenanthrenivorans Sphe3] Length = 314 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 107/303 (35%), Gaps = 37/303 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-------- 56 + F+K G GN +++ +I +D + AL D ++ + Sbjct: 19 LRFSKGHGTGNDFVLVADPEGAHSIAADEVAALCDRHRGIGGDGLIRAVPSRFLPEGREL 78 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVA 108 + F+ N DGS + CGNG+R V FL + T T G+ Sbjct: 79 LVTAPEAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLVDLPDGGALTIGTRGGVKTV 138 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 +G + A++ D + R VSMGNPH + Sbjct: 139 VRTGEGYAVDMGPWEFIFPGE-ATAKAMDSLVTAE------GLEVPRPALSVSMGNPHTV 191 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + +L P+ + G N+ + S+ +R ERGVG T Sbjct: 192 VAL-AELSELAGTRLFTAPQVDPVPANGTNVEFVVPSEPLVHDGVGSVTMRVHERGVGET 250 Query: 223 AACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWE 276 +CG+ ACA+ VA + + GG + +++ + HV ++G A Sbjct: 251 QSCGTGACAAAVAIRHWAGAEAPDSWRIHVPGGEVGVKFFAGPGGHEHVELSGPAVIVAT 310 Query: 277 GKL 279 G L Sbjct: 311 GTL 313 >gi|293977956|ref|YP_003543386.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN] gi|292667887|gb|ADE35522.1| diaminopimelate epimerase [Candidatus Sulcia muelleri DMIN] Length = 259 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 106/282 (37%), Gaps = 34/282 (12%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K + GN ++I+ ++ I + + D I+LI + D +++ Sbjct: 5 FLKYKATGNDFIIINNTEKLFLLSKKIIKNMCNRNLGIGADGIILIEKIKK--YDFYMKY 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DG E CGNG RC V F + + S+ L+ Sbjct: 63 YNSDGKEGTMCGNGGRCSVHFAKKIGIINNTNTLFK------TIDGSHYASITKNIVSLN 116 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K I L + ++ G+PH I F+++ Y + Sbjct: 117 MKNIELVE------------------VYKKHICINTGSPHHILFIDNKNYINVYNQGIKI 158 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG-CLHKTNR 244 +GVN++ + L++RT+ERGV T +CG+ AS +A+ Sbjct: 159 RFNQKYIKKGVNVNFVK-VKKHILNVRTYERGVENETLSCGTGVTASAIAAYNIKKLLYN 217 Query: 245 AVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + V+ LGG L +++ +F+ GE ++G L + Sbjct: 218 KIIVQTLGGTLQVKFEKLLKSYKEIFLKGEVNFVYKGILKLA 259 >gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489] Length = 1411 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 82/312 (26%), Positives = 136/312 (43%), Gaps = 40/312 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD--NTHFDQIMLIHDFQDASVDAF 63 + F KM+ GN +VI+ + L D ++LI + + A DA Sbjct: 1104 ITFYKMDSTGNDFIVINAMNQVVKNPAGLAVRLCDRRNGGIGADSLVLIEESKIA--DAK 1161 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-------------KSFTFETIRGILVAKE 110 +R N DG+E + GN +RCV ++L + + T ET G+ Sbjct: 1162 MRFFNLDGTEGKMAGNAIRCVGKYLYDNNIKGIQEKHGKKTDATEKITIETGSGVKTLVL 1221 Query: 111 NRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--------- 157 + S++VDMG+P+ + IP + + F+ N + + Sbjct: 1222 YKQNGKVTSVTVDMGKPLFASEEIPTSLVAVDITNCGFNEENKNAVLPKKAVVNAPLIVA 1281 Query: 158 ------FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 +++GNPH + F + + + G L H +F E N RV L Sbjct: 1282 GNEYRVTCINVGNPHCVVFSKF-VDKEPVTKIGPLFESHLVFPEKTNTEFVRVVGPNELK 1340 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +RTWERG G T ACG+ ACA+ VAS N+ ++VK+ GG L++++ V +TG Sbjct: 1341 MRTWERGNGETLACGTGACAAAVASVINGFSPINQDITVKVRGGNLIVKYT-GETVLLTG 1399 Query: 270 EAKKEWEGKLDI 281 K ++G+++I Sbjct: 1400 NTKMCYQGEVEI 1411 >gi|320105951|ref|YP_004181541.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4] gi|319924472|gb|ADV81547.1| diaminopimelate epimerase [Terriglobus saanensis SP1PR4] Length = 271 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 110/283 (38%), Gaps = 19/283 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ F K GN L+++ A + + D + + + A + Sbjct: 1 MIPFVKAHACGNDFLIVEENLAQGRHAELARRLCARTTSVGADGVEFLE--RTAEGAFNL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 R+ N DGSE + GNG RCV +L + T T G + R + + Sbjct: 59 RLFNADGSEAELSGNGTRCVAAWLAVHERIMEVTLHTHGGPRTCRTLRVEGEECMISTLM 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD---LA 181 +++P + D + V++GNPH + F + + + Sbjct: 119 GVPQVMPHSFDVDGVGN-------------VQGVDVNVGNPHFVVFTDAEDFSSHGLSWE 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP F G N+ RV + ++ R +ERGVG T + G+ CAS AS L Sbjct: 166 ELGAKICTHPAFPSGTNVEFVRVLDEDRIEFRIFERGVGPTHSSGTGTCASSAASIALRG 225 Query: 242 TNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIKT 283 ++ +GG + W + + +TG A+ G++ + Sbjct: 226 AGHILAATSIGGTQQVVWPARDEEMELTGPAEIVCVGEVSVDE 268 >gi|66804951|ref|XP_636208.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4] gi|60464570|gb|EAL62707.1| hypothetical protein DDB_G0289455 [Dictyostelium discoideum AX4] Length = 356 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 121/344 (35%), Gaps = 68/344 (19%) Query: 6 VDFAKMEGIGNKILVI--------DMRGCHDNITSDAIN--ALSTDD-NTHFDQIMLIHD 54 + F+KM G GN +V D + LS FDQ ++I++ Sbjct: 13 IPFSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINN 72 Query: 55 FQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---------------MKRKSF 97 S + +IN DG + CGNG+RC +++ Sbjct: 73 NPKVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNGTPKLVDGGDIEQ 132 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 ET+ G+++ ++ I L ++ D F Sbjct: 133 KIETLAGLVITYPKITHHLNQYNLMMIKVNMNNALVLKTNQYKDDEFENVLNKKTTNEKA 192 Query: 158 F------------------VVSMGNPHAIFFVEDDLY----------------HYDLASF 183 + +VSMGNPH + F+E ++ + Sbjct: 193 YIYTIKDLSLPQCDQLECVLVSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEI 252 Query: 184 GNLLAKHPMFSEGVNLSIARVTSL---ESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 L K P+F +G N+ + + R +ERG G T ACG+ AC VAS + Sbjct: 253 ATKLQKLPLFKDGCNVEFVSTNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMS 312 Query: 241 KT--NRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 ++ V+V M GG LLI+W + VF TG A + + + Sbjct: 313 YCTQDKEVTVSMPGGDLLIQWSSETGEVFKTGPACTVFNSNIKL 356 >gi|257871091|ref|ZP_05650744.1| diaminopimelate epimerase [Enterococcus gallinarum EG2] gi|257805255|gb|EEV34077.1| diaminopimelate epimerase [Enterococcus gallinarum EG2] Length = 276 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 117/280 (41%), Gaps = 24/280 (8%) Query: 8 FAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + KM+G GN +VID R + + + A + D +M + + + D + Sbjct: 5 YTKMQGAGNDFIVIDNRRYNFSSKQLAKLAAQVCQRKFSIGADALMAVDHPE-GTGDFRM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 R N DG+E + CGNG RC+ R+ +++ ++ ET+ G + A V + P Sbjct: 64 RFYNADGTEAEMCGNGARCIARYAYENKVASEAMVIETVAGPVPAWRLDRQQYKVTLNPP 123 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHYDLA 181 + P A + D +G G PHA+ + L Sbjct: 124 TVAKFDQPFA-DREVPVVDYIELGDP-------------GIPHAVVKYPGLQETSLDALT 169 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVA-SGCL 239 + F +G N++ S L +RT+ERGV T ACG+ + A+ A + Sbjct: 170 DLAQRIRYWSAFPKGANVNFYDADSAGELVVRTYERGVEGFTYACGTGSGATAYAVARRR 229 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 +T + + +LGG L +E + + + G+A EG++ Sbjct: 230 EQTQANLVLHVLGGELRVEVA-SEELQLIGDAIFVSEGRI 268 >gi|331092445|ref|ZP_08341270.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA] gi|330401288|gb|EGG80877.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_46FAA] Length = 259 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 115/278 (41%), Gaps = 24/278 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+ +GN + ++ N + A D ++LI + A D + Sbjct: 1 MRFTKMQALGNDYIYVNAMEEKIENPSVLAQKLSDRHFGVGGDGLILIDFSEKA--DVKM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 R+ N DG+E + CGNG+RCV +++ + K+ + + + + Sbjct: 59 RMFNADGTEGEICGNGIRCVAKYVYDKKIVKNKNIKIETYNGIIETKIFQKKYSETILAD 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + I M + + +SMGNPH + + + Sbjct: 119 MGQPSIGEENKKIVMGEEEYTAD-----------YISMGNPHLVVY----VDDPKRIQMK 163 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 E VN+ V + + +R ERG G T ACG+ ACA+ V+ + Sbjct: 164 EWQEY-----EKVNVEFVTVLNRNKISMRVKERGTGETLACGTGACAAAVSCMKKQYVDN 218 Query: 245 AVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 V V+M GG L +EW + NH+F GEAK +EG++DI Sbjct: 219 YVEVEMPGGNLFVEWEKDSNHIFAAGEAKTVFEGEVDI 256 >gi|302561672|ref|ZP_07314014.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] gi|302479290|gb|EFL42383.1| diaminopimelate epimerase [Streptomyces griseoflavus Tu4000] Length = 301 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 113/290 (38%), Gaps = 22/290 (7%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIML-----IHD------ 54 DF K E +GN LVID + T+D + + D ++ + Sbjct: 4 DFTKYEALGNDYLVIDPSAAWASPTADTVRMVTDRRRGVGADGLLFGPLADLGPDDGPPL 63 Query: 55 -FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN 111 +RI N DG+ GNG+R R+L FT T G + Sbjct: 64 TPDGGGGVFGLRIFNSDGTPCARSGNGIRVFARYLMDHGYAGADDFTIRTDAGPTAVRVL 123 Query: 112 RD--GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G I + +G + + M R+ + N +S GNPH + Sbjct: 124 DRASGLIRLALGPMSSSSRDVGATGHDRPMLRETLRVDGENIEI----TCLSDGNPHCVV 179 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E ++ + G +A HP F VN+ +V ++ WERG G T A GS A Sbjct: 180 VRE-NVTPELAHALGPRIAGHPAFPGRVNVEFVQVRDHATVRAEIWERGAGYTLASGSGA 238 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CA+ A+ L T V+V+M GG L +E + V +TG A + G+ Sbjct: 239 CAAARAAQLLGLTGEKVTVEMPGGSLEVETARSGEVSVTGTAAQVATGRW 288 >gi|51244285|ref|YP_064169.1| diaminopimelate epimerase [Desulfotalea psychrophila LSv54] gi|50875322|emb|CAG35162.1| probable diaminopimelate epimerase [Desulfotalea psychrophila LSv54] Length = 297 Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 117/296 (39%), Gaps = 35/296 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNI---TSDAINALSTDDNTHFDQIMLIHDFQD 57 M+ + F KM G GN + ID R A + + D I+ I Sbjct: 4 MEKGALSFTKMSGAGNDFIFIDNREGAVPPAIRAKLAAHICPRMFSVGADGIIFIEKSSI 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSI 116 A D N DGS + CGNG RC R+ SR +F T+ GI+ A+ D ++ Sbjct: 64 A--DFSWDFYNADGSLAEMCGNGARCAARYAFSRGIAGAKMSFATLAGIIEAEVFADDTV 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-- 174 + M P + L D ++ G PHA+ +V++ Sbjct: 122 CLQMTAPEDYRSGLSLELGGTSCQVD----------------FLNTGVPHAVVYVDEVSE 165 Query: 175 ---LYHYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAA 229 + + + +G ++ H F G N++ SL +RT+ERGV T ACG+ A Sbjct: 166 GQGIGNIPVQEWGRIVRNHDHFAPAGTNVNFVSRGEGNSLYVRTYERGVEDETMACGTGA 225 Query: 230 CASVVASGCLHKTNRAVSVKMLGGG-LLIEWH-----DNNHVFMTGEAKKEWEGKL 279 A+ + + V++ GG L I + ++G A+ ++G+L Sbjct: 226 VAAALCFSKKYGFASPVNIVSSGGEILSIAFKTGCPPQEAAPSLSGPARIIYQGEL 281 >gi|292655255|ref|YP_003535152.1| diaminopimelate epimerase [Haloferax volcanii DS2] gi|291370113|gb|ADE02340.1| diaminopimelate epimerase [Haloferax volcanii DS2] Length = 288 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 116/290 (40%), Gaps = 23/290 (7%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT--------HFDQIMLI-HD 54 + V F K G GN V+D + + A + D ++ + + Sbjct: 5 NTVPFEKFHGTGNDFFVVDADDPVPDRPAFARTHCDREAGITLSESERRGADGVLFLALE 64 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + + ++ DGS CGNG R + R +T G A + Sbjct: 65 SRYDPPRVVMTLVQPDGSVAAMCGNGARVAAAWAAERTGTNEVMIDTPAGTRRASLDGTD 124 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++V+MG P + +PLA + +D + + V+ G PHA+ FV+D Sbjct: 125 -VTVEMGAPSFAPRDVPLASDDELVDTE---------VEGLTVTAVNTGVPHAVAFVDDV 174 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASV 233 DL S + +F EG N+++A RT+ERGV T +CG+ A A V Sbjct: 175 -DDVDLESVAPPVRHASVFPEGANVTLASPDGEGGFRQRTFERGVEGETQSCGTGAVAVV 233 Query: 234 VASGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ L + + V+V GG L + D + G A E +G+ DI Sbjct: 234 AAAKRLGRVSGDDPVTVTPPGGALSVTVPDEGAALLGGPAVYEGDGEADI 283 >gi|222479106|ref|YP_002565343.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239] gi|222452008|gb|ACM56273.1| diaminopimelate epimerase [Halorubrum lacusprofundi ATCC 49239] Length = 309 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 121/313 (38%), Gaps = 43/313 (13%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD------------------ 42 M + V F K G GN LV+D + + Sbjct: 1 MSTHAVPFEKYHGTGNDFLVVDADAEVVGDRAAFARTHCDRETGVDGGDFDAERNEESTG 60 Query: 43 NTHFDQIMLIHDFQD-ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET 101 D ++ + + + ++ DGS CGNG R V + R + F +T Sbjct: 61 RRGADGVLFLSVEERFNPTRVVMTLVQPDGSTATMCGNGARVVALWAHDRTGDREFMIDT 120 Query: 102 IRGILVAKENRDGSISVDMG-EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV 160 G A N D + + EP D +PLAR + PV L V Sbjct: 121 QAGTRRASVNADATAATIEMGEPTFDPARVPLARD------EPLIDEPVEGL---TVTAV 171 Query: 161 SMGNPHAIFFVE------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----- 209 + G PHA+ FV+ D + DL + + +F EG N+++A V S Sbjct: 172 NTGVPHAVAFVDGGRSDPDGIDSVDLDAVAPPVRHADVFPEGANVNLASVVDDGSGDGPA 231 Query: 210 -LDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV-KMLGGGLLIEWHDNNHVF 266 +D RT+ERGV T +CG+ A A V A+ L + +V + GG L + D H Sbjct: 232 LIDQRTFERGVEGETRSCGTGAVAVVAAARRLGLIDGESAVSRPPGGDLEVTVPDRGHAT 291 Query: 267 MTGEAKKEWEGKL 279 +TG +E+EG L Sbjct: 292 LTGPVAREYEGTL 304 >gi|300712119|ref|YP_003737933.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3] gi|299125802|gb|ADJ16141.1| diaminopimelate epimerase [Halalkalicoccus jeotgali B3] Length = 288 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 113/300 (37%), Gaps = 42/300 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNT------HFDQIMLIHDFQDAS 59 V F K G GN L+ + + AI + D ++++ Sbjct: 3 VAFEKYHGTGNDFLIC-GADEAVDWGAFAIEHCDRETGIEVDGRRGADGVLVLSLS---G 58 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR------------------MKRKSFTFET 101 +R+ DG CGNG RC ++ R + F +T Sbjct: 59 ERVRMRLYQPDGGTAAMCGNGARCAAQWAARRLRRLDTRERPEAASGAGGIGADEFAIDT 118 Query: 102 IRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 G A+ +I ++MG P + +PLAR + ++ Sbjct: 119 PAGERRARVGE-DTIEIEMGVPSFEPADVPLARE---------EPLIREDVEGWEVTALN 168 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG- 220 G PHA+ FV+ D+ DL + + +F EG N+++A S D RT+ERGV Sbjct: 169 TGVPHAVVFVD-DVSTTDLGAMAPPIRHAEVFPEGANVNLASP-SERGFDQRTFERGVEG 226 Query: 221 LTAACGSAACASVVASGCLHKT-NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A A + + VSV GG L + D+ ++G + E G++ Sbjct: 227 ETRSCGTGAVAIAAVAKRIGLVEGDRVSVSPPGGDLDVRVPDDGPAVLSGPVEFEGRGEV 286 >gi|288573423|ref|ZP_06391780.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569164|gb|EFC90721.1| diaminopimelate epimerase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 270 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 24/283 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 ++F KM G GN +VID G + + D ++++ ++ D + Sbjct: 1 MNFWKMNGNGNDFVVIDRDGMAYGQLVDLTRRVCRRRRSIGADGVLVVEPSDNS--DFRM 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEP 123 R+ N DGSE + CGNG RC+ R+ R +FETI GI+ A+ +++DM Sbjct: 59 RVFNSDGSEGEMCGNGARCIARYAFERGIAPFEMSFETIAGIMKARVEGS-FVNLDM--- 114 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-LYHYDLAS 182 D P+ + F++ I+ + D + DL Sbjct: 115 ----------GEVDLGKGWFGRKVPMAGGEVEADFLIVGVPHLVIYLEDPDKVDREDLTR 164 Query: 183 FGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLH 240 +G +F EG N++ SL + T+ERGV LT +CG+ +CAS V + Sbjct: 165 WGRTLREDRGLFPEGTNVNFVGPVDRRSLKVWTYERGVEDLTDSCGTGSCASAVVAVRRL 224 Query: 241 KTNRAVSVKMLGGGLLIE--WHDN-NHVFMTGEAKKEWEGKLD 280 ++V GG ++ + ++ + + GE +G ++ Sbjct: 225 DLESPITVYNPGGVNIVTANFREDLCDIVLGGETVVVAKGTIE 267 >gi|256390821|ref|YP_003112385.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928] gi|256357047|gb|ACU70544.1| diaminopimelate epimerase [Catenulispora acidiphila DSM 44928] Length = 293 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 14/279 (5%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQDAS 59 K G N +++ I + AL D ++ + ++ Q A Sbjct: 13 TKGHGTENDFVIVPDPDGTLEIAPSRVAALCDRRAGIGADGVLRVVRTARMPGYEDQAAE 72 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + F+ N DGS + CGNG+R F+T+R K V +++ Sbjct: 73 AEFFMDYRNADGSVAEMCGNGVRVFALFVTARGLVKGGGVGEPVEFAVGTRGGIKRVTLR 132 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + +R + H R+ V MGNPHA+ FV+ Sbjct: 133 AT--GENTADVTVDMGIPVFPTERGAVTVDVHGTPRDAVDVDMGNPHAVVFVDSTDDAGS 190 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 L + EGVN+ A + L +R +ERGVG T +CG+ ACA ++A+ Sbjct: 191 LYEMPTVSPTGVYA-EGVNVEFAADVAPRHLAMRVYERGVGETRSCGTGACAVMIAAARR 249 Query: 240 HKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 +V +LGG L + H+ MTG A ++ Sbjct: 250 DAADAGTEYTVDVLGGRLRFVERADGHLEMTGPAALVFD 288 >gi|327405379|ref|YP_004346217.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823] gi|327320887|gb|AEA45379.1| Diaminopimelate epimerase [Fluviicola taffensis DSM 16823] Length = 259 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 39/284 (13%) Query: 8 FAKMEGIGNKILVIDMRGCH-DNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F K +G GN ++ID R D+++ I L D ++ I+ + D + Sbjct: 5 FVKYQGTGNDFVMIDNRSGEWDDLSISTIQKLCDRRFGVGADGLIKIN--SISGYDFEVD 62 Query: 66 IINCDGSEVQSCGNGMRC-VVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS+ CGNG RC V + + +F I G+ A + Sbjct: 63 YYNSDGSKS-FCGNGARCSVAFAHELGIIKDHVSFMAIDGVHEAVKKGSLVFLKMN---- 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 D I ++ FV++ G+PH I F E+ ++ Sbjct: 118 -DVSEIDVSHKE---------------------FVLNTGSPHFIHFTENVADFDIVSYGK 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + EG+N++ S +++T+ERGV T +CG+ A+ +A G + Sbjct: 156 QIRYSDTYKQEGINVNAIHQLDSHSFEIKTYERGVEDETLSCGTGVTAAAIALGEKNLIV 215 Query: 244 RAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 VK GG L + + N ++++ G A+ ++G+ ++ Sbjct: 216 GEFEYAVKSQGGNLAVRFTRENSKFTNIWLIGPAEVVFKGETNV 259 >gi|323484138|ref|ZP_08089508.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163] gi|323693217|ref|ZP_08107435.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] gi|323402580|gb|EGA94908.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14163] gi|323502700|gb|EGB18544.1| diaminopimelate epimerase [Clostridium symbiosum WAL-14673] Length = 290 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 16/282 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V F K +GN LV D + + I + D I+ ++ Sbjct: 4 VTFEKYHCMGNDYLVYDPNKNEMELNEENIRLICDRNFGVGSDGILA--GPYLDQEKMYV 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-----LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +I+N DGSEV GNGM ++ + T + E + + Sbjct: 62 KILNPDGSEVPKSGNGMGIFAKYLKDAGYVQKTSVSWMTISGEENVFYLNEEGT-RVKIS 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P IP+ +M G + ++ +S+GNPH + ++ ++ Sbjct: 121 MGRPSFWSDEIPVTGERREMVNQTMMFGKIPYVT----TCLSLGNPHCVIWMS-EISKDQ 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + G F E VN + V ++ + +ERG G T A GS ACA+ A+ L Sbjct: 176 VCRIGEHSENADYFPEKVNTQLLNVLDRTNIQIEIYERGAGYTLASGSCACAAACAALRL 235 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + V M GG L +E ++ V+M GE G + + Sbjct: 236 GLADNNMYVHMPGGILEVEIKEDGTVYMVGEVGHV--GTITL 275 >gi|302874484|ref|YP_003843117.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] gi|307690909|ref|ZP_07633355.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] gi|302577341|gb|ADL51353.1| diaminopimelate epimerase [Clostridium cellulovorans 743B] Length = 321 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 13/288 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN ++ID N T + AI D I+ + + Sbjct: 3 IEMIKCHGTGNDFILIDEISYDYNFTEEDRKNLAIKLCDRKKAIGGDGILFVQKSEK--C 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 ++IIN DGSE + CGNG+RCV +FL ET++ + + ++ +D V Sbjct: 61 VGKMQIINSDGSEAEMCGNGLRCVGKFLLETTGENKILVETMKAVYLVEKVQDIYKGVFT 120 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 E +D + + + F +R +S+ NPH + FVE+ Sbjct: 121 DEITIDSIDFNVDSLPLVYEKENLFFEKLTALSDIREFTAISITNPHLVSFVEEIEKEEL 180 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 A + +GVN++ + +S+ ++T+ERGVGLT +CG+ +S +A+ Sbjct: 181 KAVGIKANDTKELLPKGVNVNYVKEIDEDSIYVKTYERGVGLTKSCGTGMVSSSIATLLK 240 Query: 240 HKTNRAV-SVKMLGGGLL--IEWHDNN--HVFMTGEAKKEWEGKLDIK 282 H N +V GG + + +++ V M G A ++ + I+ Sbjct: 241 HGINEKTYNVYNDGGMIQCKVTKNEDGIFRVMMRGNATFIYKSTISIE 288 >gi|116873454|ref|YP_850235.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463988|sp|A0AKC4|DAPF_LISW6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|116742332|emb|CAK21456.1| diaminopimelate epimerase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 328 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 19/312 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDN--THFDQIMLIHDFQ 56 +++ F K+ G N ++D H +D L + D I+ + Sbjct: 2 AIIHFTKVHGSQNDFFLVDEEENHITAWSDTKRADFAIKLCDRSHSLGGADGILYVAKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 A +R++N DGS CGNG+R V R+L + ET++ IL ++ Sbjct: 62 KAGAIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVRKATSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + K P + F+ VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFNPESLPMYVGVEKLFNQVIPELDEELAFSAVSVPNPHLITFVDQTV 181 Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +++P F +GVN+S + + +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQEKLASFLNSENPYFPDGVNVSFVKRLNEDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL---DIKTG 284 + L + ++V GG + + + + + G A G + DI T Sbjct: 242 LIKKMLDQDTLETPLNVYNDGGRVQVTAKKDETGDISLQLIGNATFVSTGSVRYDDIVTE 301 Query: 285 KWIKKNEDDEAY 296 + + Y Sbjct: 302 LTNEATVEQAQY 313 >gi|257068241|ref|YP_003154496.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810] gi|256559059|gb|ACU84906.1| diaminopimelate epimerase [Brachybacterium faecium DSM 4810] Length = 282 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 105/282 (37%), Gaps = 18/282 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD--- 61 +DF K G N +V+D + + A+ AL+ D ++ + A +D Sbjct: 5 IDFTKGHGTENDFVVLDDPEGALELEAVAVAALADRRAGIGGDGVIRCVRSRCAGIDAPP 64 Query: 62 ----AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 F+ N DGS + CGNG+R L + FE + V + I Sbjct: 65 DAPEWFMDYRNADGSLAEMCGNGVRVFAAHLRRTGHITTGRFEILTRAGVRTVD----IL 120 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + P DW + + V MGNPH + F+ +L Sbjct: 121 EEPASPGGDWS---VRVGMGASRSTQRARTVEIAGVRLTATDVDMGNPHTVVFLPPELAL 177 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 L A P + G N+ + R + +R ERGVG T +CG+ A VA+ Sbjct: 178 EGLD-LTRRPALEPEPARGANVELVRERGPRHVAMRVHERGVGETRSCGTGVAAVAVAAA 236 Query: 238 CLHKTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +V + GG L + W + V +TG A+ +G Sbjct: 237 LRAGDESRAPWTVDVPGGRLQVGWTEEGEVTLTGPARLVADG 278 >gi|229087449|ref|ZP_04219583.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44] gi|228695871|gb|EEL48722.1| Diaminopimelate epimerase [Bacillus cereus Rock3-44] Length = 268 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 135/265 (50%), Gaps = 18/265 (6%) Query: 25 GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCV 84 + ++ ++ + + D ++LI + A V +R+ N DGSE +SCGNG+RCV Sbjct: 8 EEELALVAEKVSNI--NTGIGADGMILICPSEVAPV--KMRMFNSDGSEGKSCGNGLRCV 63 Query: 85 VRFLTSR--MKRKSFTFETIRGILVAKENRDGS----ISVDMGEPILDWKLIPLARSFD- 137 ++ + FT ET+ GI+ A+ + + +DMG P L +P+ + Sbjct: 64 AKYAYEHKLVAETVFTIETLAGIVTAEVTVEEGIVTLVKIDMGAPRLTRAELPMLGEGET 123 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 R+ F ++F VSMGNPHA+ FV+ D+ L + G +L H MF E V Sbjct: 124 PFIREDFLYNNHRYVFTG----VSMGNPHAVIFVD-DVEEAPLTTLGPVLETHEMFPERV 178 Query: 198 NLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGL 255 N+ + + ++ R WERG G+T ACG+ ACA+VVA+ K R ++V + GG L Sbjct: 179 NVEFIEIVNGNEMNFRVWERGSGITQACGTGACAAVVAAVLNEKMKRGEEITVHLAGGDL 238 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLD 280 +I W + +V M G A+ G + Sbjct: 239 MIAWAEEGNVLMKGPAEVICRGVYE 263 >gi|289523890|ref|ZP_06440744.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502546|gb|EFD23710.1| diaminopimelate epimerase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 280 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 31/287 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRG---CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M+ FAK G GN ++I+ + D ++ A + D ++++ + + D Sbjct: 1 MISFAKAHGNGNDFIIIENKEGTYSDDRLSDLAKKICRRKTSLGADGVLVLEGSK--TFD 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDM 120 ++R+ N DGSE + CGNG RC+ R+ + K TFET G + A N Sbjct: 59 FYMRLFNADGSEGEMCGNGARCIARYAFEKGHAKSDMTFETKAGPIRASVNPP------- 111 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE--DDLYHY 178 W I + D + I F V G PH + F D+ Sbjct: 112 ------WATIDM-GEIDVSNLKEGKINAFGKEIPYVAFYV--GVPHCVLFFPGFRDIPRD 162 Query: 179 DLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 L S + + +F EG N++ A + + + T+ERGV T +CG+ + A +AS Sbjct: 163 SLLSLARHIRRKGAIFDEGANVNFAER-NKDCIGAMTYERGVEDFTLSCGTGSIACCLAS 221 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWH-DNNHVF---MTGEAKKEWEGKL 279 L + A+ VK GG + + VF ++G+A EG + Sbjct: 222 HLLFGSPLAMKVKNPGGVNKVALRLTSEKVFEASLSGKALIVAEGLI 268 >gi|114777740|ref|ZP_01452700.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1] gi|114551956|gb|EAU54490.1| diaminopimelate epimerase [Mariprofundus ferrooxydans PV-1] Length = 235 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 96/278 (34%), Gaps = 48/278 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 + F KM+ GN +V++ T + ++ DQ++++ A DA Sbjct: 4 LPFYKMQAQGNDFVVLNGLTSTLPEFTEAWVRRITERRYGIGCDQLLVLEQSDKA--DAA 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 IRI N DGSE +CGNG+RCV + L + ++ I+ A+ Sbjct: 62 IRIFNNDGSEAANCGNGLRCVGQLLIELLGKEFVLIALKDRIVRAEAGI----------- 110 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 N V MG I + + Sbjct: 111 --------------------------------NGICVEMGPATVINSTDAHVDIDIGNQH 138 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 F +N+ I + + ERG G T ACGS ACA+ A Sbjct: 139 RVFFEATEAFPSDLNVEIVTGQIANHVYIDIIERGAGRTLACGSGACATAAAIWYSEGEV 198 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R ++++M GG + + N V + G + + G I Sbjct: 199 RPLTIEMPGGTVTVSGCAKN-VRLEGPVTQTFSGVFTI 235 >gi|88855438|ref|ZP_01130102.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1] gi|88815345|gb|EAR25203.1| diaminopimelate epimerase [marine actinobacterium PHSC20C1] Length = 292 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 105/302 (34%), Gaps = 34/302 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASV-- 60 + ++F K +G GN ++ +T + A+ D I+ + V Sbjct: 2 ATLNFTKGQGTGNDFVLFSDPEGQLELTPQQVAAICDRRFGVGADGILRAVRSSNIDVGA 61 Query: 61 ---------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + F+ N DG+ + CGNG+R +L FE + V + Sbjct: 62 AALAEDADAEWFMDYRNADGTAAEMCGNGIRVFAHYLAENGFVD---FEPGDTLPVGTRS 118 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + +M D +D + R +++GNPH + + Sbjct: 119 GVRDVQRNMAGYQAD-------MGRWSLDGGEPLVRAKELDVARPGLGINVGNPHVVVAL 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAAC 225 D D + P+ G N+ S+ +R ERG G T +C Sbjct: 172 -ADESELDHVDLNYIPVIDPLPEHGANVEFVVPAEPLVKDGVGSIRMRVHERGSGETLSC 230 Query: 226 GSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLD 280 G+ A A+ +A V + GG +++ D HV ++G A+ + G L+ Sbjct: 231 GTGAVAAALAIRHYAGAGAPNQWRVAVPGGTVVVRMFPTEDGEHVSLSGPAELVYTGSLE 290 Query: 281 IK 282 + Sbjct: 291 LA 292 >gi|288935266|ref|YP_003439325.1| diaminopimelate epimerase [Klebsiella variicola At-22] gi|288889975|gb|ADC58293.1| diaminopimelate epimerase [Klebsiella variicola At-22] Length = 288 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 119/279 (42%), Gaps = 13/279 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 + F K G+GN LV R + ++++ + L D +++ ++ + Sbjct: 4 LHFHKYHGLGNDYLVC-HRDVAEQLSNEHVQMLCHRHYGVGSDGLLI---DSGDQINPTL 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTS--RMKRKSFTFETIRGILVAKEN-RDGSISVDMG 121 RIIN DGSE + GNG+R R+L R+ + F T G + + ISVDMG Sbjct: 60 RIINPDGSEAEKSGNGLRIYARYLFDIGRVGHEPFLVHTAGGDVYCTVHGDVHQISVDMG 119 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + +P + + + + +VSMGNPH + V+ L + Sbjct: 120 RANFNPAALPALVNLPEAVNYPLPLAD----ETLSVVLVSMGNPHCVVLVDK-LDLAQVH 174 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + H +F + N+ V +L + WERG G T A GS++CA+ A L Sbjct: 175 RLGPQIENHSLFPKRTNVQFVEVIDRHTLKIGIWERGAGFTMASGSSSCAAASAMRRLGM 234 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V V M GG L I + + V M G K LD Sbjct: 235 VDDWVDVNMPGGQLHITFDADFQVRMRGPVHKIASLTLD 273 >gi|315641452|ref|ZP_07896524.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952] gi|315482740|gb|EFU73264.1| diaminopimelate epimerase [Enterococcus italicus DSM 15952] Length = 272 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 31/284 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-NTHFDQIMLIHDFQDASV 60 + F KM+G GN +VID +++++ + + + D +M++ Q+ Sbjct: 3 IPFYKMQGAGNDFIVIDN--QKLHLSNEQLVALTKKICQRRLSVGSDALMVVDVPQNTG- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + N DG+E + CGNG RC+ R+ + + ET+ G + A + + V Sbjct: 60 DVRMIFFNADGTEAEMCGNGARCLARYAYENDLASDKMLIETVAGDVPAWRLDERTYKVQ 119 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH-- 177 + EP ++ +P + V+++ L NP G PH + + Sbjct: 120 LNEPTVEQFDLP------------YENISVDYIELGNP-----GLPHLVVRCDALATEPL 162 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236 SF L +G N+++ V + LRT+ERGV T ACG+ A A+ + Sbjct: 163 ASFESFARELRYWDYLPKGANVNLYAVDDQGQIVLRTFERGVEGFTYACGTGAGATAYSL 222 Query: 237 GCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VS++ LGG L ++ + +F+ G+ EG + Sbjct: 223 VKKGIVPSTTVSLQTLGGVLQVQVQKDQ-LFLIGDTNIVVEGSI 265 >gi|297626488|ref|YP_003688251.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922253|emb|CBL56825.1| Diaminopimelate epimerase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 277 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 99/281 (35%), Gaps = 24/281 (8%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML-----IHDFQDASV 60 +FAK G N +++ R ++ + L D ++ Sbjct: 5 EFAKGHGTMNDFVLLKDRTNSTELSPQDVRYLCDRRAGIGGDGVIRAVWAKYMPSWTGDP 64 Query: 61 D-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + F+ N DGS + CGNG+R FL + Sbjct: 65 NMWFMDYRNSDGSVAEMCGNGLRVFGHFLLDENLADGPDIQVATRAGQRDVAEMNDELFR 124 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 G + P S D ++ + V +GNPHA+ F+ D+ Sbjct: 125 AGIGHVQVASQPTHVSLDGVEYE--------------ATTVDVGNPHAVVFLPADVDLES 170 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA-SGC 238 L ++ G N+ RV S SL +R +ERG G T +CG+ A+ A Sbjct: 171 LDLSHPPRFDTRVYPAGTNIEFVRVHSDRSLSMRVFERGSGETMSCGTGVVATAAAQGAR 230 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L + R V + GG L +E D++ +TG A G + Sbjct: 231 LGEQGRF-GVDVPGGHLEVEL-DDSMAHLTGPAVIVAHGSV 269 >gi|145593993|ref|YP_001158290.1| diaminopimelate epimerase [Salinispora tropica CNB-440] gi|145303330|gb|ABP53912.1| diaminopimelate epimerase [Salinispora tropica CNB-440] Length = 280 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 103/289 (35%), Gaps = 30/289 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIM-LIHDFQDA----- 58 ++F K G GN +++ +T D + A+ D ++ ++ + Sbjct: 1 MEFTKGHGTGNDFVILPDPDGTLELTPDLVAAVCDRRQGIGGDGVLRVVRAARHPEGAAL 60 Query: 59 --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + + F+ N DGS + CGNG R VR+L G R G + Sbjct: 61 AGAAEWFMDYWNSDGSVAEMCGNGARVFVRYLLEAG------LAVPSGAAFPVATRAGLV 114 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + LA + I ++ L L V +GNPH + V L Sbjct: 115 RARVEGEE-------LAVEMRRPRLAGASIAVLDGLAL-PGTAVDVGNPHLVCPVPAGLE 166 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWERGVGLTAACGSAACA 231 L +F GVN+ + +R +ERG T +CG+ ACA Sbjct: 167 LAALDLNRAPEIDPVIFPTGVNVEFITPGDPTGGTDGYVRMRVYERGSAETRSCGTGACA 226 Query: 232 -SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V + V+V + GG L++ ++ G A G++ Sbjct: 227 VAAVVLRDAGRDTGVVAVDVPGGRLVVT-QTAQACWLAGPAVLVATGEV 274 >gi|256832281|ref|YP_003161008.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603] gi|256685812|gb|ACV08705.1| diaminopimelate epimerase [Jonesia denitrificans DSM 20603] Length = 304 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 108/309 (34%), Gaps = 34/309 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-STDDNTHFDQIMLIHDFQ------ 56 + + F K G N +++D ++T + + AL D ++ + Q Sbjct: 2 TTLPFTKGHGTRNDFVILDDPQGAIDLTEELVRALTDRRSGVGADGVIRVMRAQLSEEVR 61 Query: 57 -----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILV 107 D V+ F+ N DGS CGNG+R RFL R ++ T GI Sbjct: 62 DLVTRDPRVEWFMDYRNADGSIASMCGNGVRVFARFLEERKGVTALGAAYPIATRAGIRT 121 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 ++ G P + I H R VSMGNPH Sbjct: 122 IRKI--GDWYEVGMGPAQFLDD---TAARTTGHDATVTIPMQPHEPARPGISVSMGNPHT 176 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE---------SLDLRTWERG 218 + + D P+ G N+ ++ +R +ERG Sbjct: 177 VVAL-PDHDTLAELDLTRSPGVDPVPVHGTNVEFVVPDGVDTAADGTVVGRASMRVYERG 235 Query: 219 VGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 VG T +CG+ ACA+ A + ++ + GG + + + V + G A+ + Sbjct: 236 VGETQSCGTGACAAAAALHRWAGESSPRTWTITVPGGRVQVTL-GTHEVLLAGPAELVAD 294 Query: 277 GKLDIKTGK 285 G + I + Sbjct: 295 GHITITSLN 303 >gi|149179746|ref|ZP_01858251.1| diaminopimelate epimerase [Bacillus sp. SG-1] gi|148851938|gb|EDL66083.1| diaminopimelate epimerase [Bacillus sp. SG-1] Length = 330 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 15/290 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD-----AINALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN L+ID N + AI D I+ + D Sbjct: 3 INLIKCHGSGNDFLLIDEITETYNFSEKDRQNLAIALCDRKKGIGADGILFVLDSDR--C 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +R+ N DGSE CGNG+RCV R++T + T ET++ L + Sbjct: 61 DGKMRVFNADGSEASMCGNGLRCVGRYVTELKNKSDITIETMKADLKISSEPSIFAEIPT 120 Query: 121 GEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--LYH 177 + + L L + + V++ NPH I VE++ L + Sbjct: 121 FKVEISPVLFELKHLPMNIDKQTLIDEKVPEISAALTFTAVAVPNPHLISIVENEHILSN 180 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 + ++ + +F +GVN+S + + + +RT+ERGVG T ACG+A AS + + Sbjct: 181 EQKSISESVNGPNNLFPDGVNVSFVQSLGTDGIYVRTFERGVGFTNACGTAMSASTLVTC 240 Query: 238 CLHKT--NRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282 + + V GG + + H N+ F + G A KLD+ Sbjct: 241 LSGLNEFEKEIDVFNNGGKVRVIVHKNDEQFSMDLIGNATYTSRYKLDLD 290 >gi|309777895|ref|ZP_07672839.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53] gi|308914343|gb|EFP60139.1| diaminopimelate epimerase [Erysipelotrichaceae bacterium 3_1_53] Length = 273 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 11/278 (3%) Query: 5 MVDFAKMEGIGNKILVID-MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ K G GN ++ D R + +I + D +L+ Sbjct: 1 MIPVTKYHGCGNDFIITDWERVMNCDIEDFVVKVCDRHTGIGADGCILVKQHP-----LE 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS CGNG+RC ++ + + ET+ G V + Sbjct: 56 MVFYNGDGSRAPMCGNGIRCFAKYCYDERIETAEEYDVETLAGRKHVTRVSLDLFQVRID 115 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + W P + + + + M H + FV D + +D + Sbjct: 116 --MGTWDDDPKSIQVEGQSEPIMDYKLTVGDTSVSVYSFFMSTVHTVVFVS-DAFAFDYS 172 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G + HP++ E N++ + + +L + T+ERGVG+T ACG+ ACA+ + Sbjct: 173 DIGKKICHHPLYKEQTNVNFVEIADVNTLRMVTYERGVGMTLACGTGACAAARIAYEKKG 232 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V + G L IE D HV M G A++ +G+ Sbjct: 233 CASKLRVLLKRGELHIEIDDQQHVHMFGPAERILKGEF 270 >gi|162456438|ref|YP_001618805.1| hypothetical protein sce8155 [Sorangium cellulosum 'So ce 56'] gi|161167020|emb|CAN98325.1| dapF [Sorangium cellulosum 'So ce 56'] Length = 265 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 72/290 (24%), Positives = 117/290 (40%), Gaps = 33/290 (11%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDAS 59 M+ ++V F K EG+GN ++++ +T++A L D +++I Q Sbjct: 1 MKENVVRFEKWEGLGNDFILVEA----VPMTAEAARRLCDRRFGIGADGVLVIEREQ--- 53 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-MKRKSFTFETIRGILVAKENRDGSISV 118 +++ N DGS + CGNG+RCV +L SR +K+ T T G + R G Sbjct: 54 --PRMQVWNADGSRPEMCGNGIRCVAAYLVSRGTPQKAVTIATDAGDKRCEVTRAGDRFD 111 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 L + + + V +GNPHA+ F Sbjct: 112 V------------LVGMGRARMGETLVVTALGAE--HRFACVDVGNPHAVTFDPYTEDA- 156 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLE---SLDLRTWERGVGLTAACGSAACASVVA 235 + G ++A P V R +D+ WERGVG T ACG+ ACA A Sbjct: 157 -IDELGPIVATTPAEGINVEFCRVRPAEHGEAARIDVTVWERGVGRTLACGTGACAVAAA 215 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKLDIK 282 + + + V + GG L I + + M G A++ + G++ I Sbjct: 216 ACAQGRAPYGAPLRVALPGGSLRITVAPGSLELLMQGPARRAFSGEVVIA 265 >gi|330805715|ref|XP_003290824.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum] gi|325079034|gb|EGC32655.1| hypothetical protein DICPUDRAFT_155352 [Dictyostelium purpureum] Length = 361 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 124/344 (36%), Gaps = 67/344 (19%) Query: 6 VDFAKMEGIGNKILVID----MRGCHDNITSDAINAL--------STDDNTHFDQIMLIH 53 V F+KM G GN + + R + + ++ L DQ+++ + Sbjct: 12 VKFSKMHGAGNDFVCFETNKVERINSFDKSEISLKELKDISLILADRKYGVGCDQLIICN 71 Query: 54 DFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-------------- 97 + S + +IN DG + CGNG+RC +F+ Sbjct: 72 NNPKVEKSAHYEMIVINSDGQQATMCGNGVRCFSKFVIDNKIESKSLNGTPKKDETTSEI 131 Query: 98 ----------TFETIRGILVAKENRDGSISVDMGEP----ILDWKL-----IPLARSFDK 138 + + V+MG WK + +S DK Sbjct: 132 EQKVETLAGLIITYPQIYHHLNTRNVMMVKVNMGNALVLKTNKWKESYGTVLNNKQSIDK 191 Query: 139 MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL----------- 187 + + +VSMGNPH I F++ ++ L Sbjct: 192 SAYLETVELNLPNCKQLECVLVSMGNPHCIVFLQRNIELGYLNKEECSNLKTMKIEDIAV 251 Query: 188 --AKHPMFSEGVNLSIARVTSLESLDL----RTWERGVGLTAACGSAACASVVASGCLHK 241 KHP+F++ N+ ++ L R +ERG G T ACG+ A A VAS + Sbjct: 252 ALQKHPLFTDSCNVEFVYQSNENKLSNTVISRVYERGAGETLACGTGASAVAVASILMGH 311 Query: 242 TNR--AVSVKMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDIK 282 + V+ M GG LLI+W N +VF TG A + ++DI+ Sbjct: 312 CDSEKEVTCSMPGGDLLIQWGSGNKNVFKTGPACTVFSSQIDIE 355 >gi|269791681|ref|YP_003316585.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099316|gb|ACZ18303.1| diaminopimelate epimerase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 273 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 30/287 (10%) Query: 6 VDFAKMEGIGNKILVIDMRG----CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 V+F K++G GN L +D ++ A+ A + D ++++ + A Sbjct: 5 VEFFKVDGNGNDFLFVDDLDGRLSSRFDLPELAVRACGRRTSVGADGLLVMGWDRGA--- 61 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +RI N DGSE CGNG RC ++ F T G + A +RD ++S+ M Sbjct: 62 YRMRIFNADGSEADMCGNGARCFAMMLRWLGLEDPEMEFLTNVGPVRAHVHRDSTVSLHM 121 Query: 121 -GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHY 178 P + L ++ +++ + ++ + +G PH + + + DL Sbjct: 122 GFNPFGEGALFRVSERVGEVEAEMWY--------------LHVGVPHLVLWADRWDLRED 167 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 S G P F G N++ S L T+ERGV LT +CG+ ACA ++ Sbjct: 168 GFRSLGARYRHDPRFPRGTNVNFVSP-SEGGLTCITYERGVEDLTLSCGTGACAVAASAV 226 Query: 238 CLHKTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDI 281 V V+ GG L+E + G + G L + Sbjct: 227 MRG-MGSPVRVESPGGYNLVEVGLEDLGARYRLRGPVRVSARGVLYV 272 >gi|20093872|ref|NP_613719.1| diaminopimelate epimerase [Methanopyrus kandleri AV19] gi|24418365|sp|Q8TY71|DAPF_METKA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|19886804|gb|AAM01649.1| Diaminopimelate epimerase [Methanopyrus kandleri AV19] Length = 279 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 108/293 (36%), Gaps = 39/293 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASVD 61 + F K+ G N +++D SD A A D ++ I + Sbjct: 1 MQFWKVHGARNDFVLVDETEEEVVPESDKPDFARWACDRRSGVGADGVVFI---RSDPPS 57 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +RI N DGSE + CGN RCVV+++T T+ G + + + Sbjct: 58 VEMRIFNRDGSEAEFCGNAARCVVKYVTEVRGENVKILRTLSGAHRVEVQGG---WIAVE 114 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD-LYHYDL 180 P + K + + + V G PH + E D ++ + Sbjct: 115 VPEAEIKKV-----------------------VELGYEVDAGVPHFVRLTERDPIHDFGG 151 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + +G S++ L +RT+ERGVG T ACGS A+ + + Sbjct: 152 LTDEAKTIFSEYEPKGGVNVTYAAPSVDELRVRTFERGVGWTPACGSGVVAASLVYSEIF 211 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 VSV+ GG L + D + G A+ ++G+L G W + + Sbjct: 212 GPFEEVSVRTAGGCLRVSLSDGP--LLIGRAEIVYKGELR---GDWRENTDHQ 259 >gi|29829703|ref|NP_824337.1| diaminopimelate epimerase [Streptomyces avermitilis MA-4680] gi|15824186|dbj|BAB69347.1| putative diaminopimelate epimerase [Streptomyces avermitilis] gi|29606812|dbj|BAC70872.1| putative diaminopimelate epimerase [Streptomyces avermitilis MA-4680] Length = 307 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 12/275 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-HDFQDASVDAFI 64 +F +GN +V+D RG A+ L D ++ +A + Sbjct: 31 EFFTYHALGNDYVVVDPRGSDFTPGPAAVRLLCDRHFGVGADGVLFGPLGAPEAGEPVRL 90 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 R+ N DG+E + GNG+R L E G + V + + Sbjct: 91 RMFNSDGTECEKSGNGLRMFALHLAETYGEPWSGDEEF-----PLRTAAGDVPVRILDLA 145 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + R + +G V GNPHA+ + ++ G Sbjct: 146 SGTVQVGMGRPEFGATGESLDVGGR----RLAVTSVHNGNPHAVVPL-AEISAGLARELG 200 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 L+A H F N+ + ++ + +ERG G T A GS+ACA+ A+ L T Sbjct: 201 PLIAGHTRFPGRTNVQFLAIVDRRTIAIEVYERGAGYTLASGSSACAAAAAAHALGLTGP 260 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V V+M GG + + + V MTG A++ G+ Sbjct: 261 DVEVRMPGGRIDVSIAADGSVSMTGTAERISSGRF 295 >gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168] gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168] Length = 1430 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 57/329 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +DFAKM+ GN +V + N ++ D ++LI A DA + Sbjct: 1106 LDFAKMQSTGNDFIVFNAMEQEIINPEGLSVRLCDRRTGIGADSLVLITKS--AVADAGM 1163 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---------------FTFETIRGILVA- 108 R N DGSE GN + CV ++L T ET G+ Sbjct: 1164 RFFNRDGSEGNMAGNAICCVAKYLYDNDINGIAARAASAVGTHFTAEITVETASGVKRLL 1223 Query: 109 ---KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDR---------------------- 143 + + S+ VDMG+P D IP + + Sbjct: 1224 AYTQSGKVSSVRVDMGKPEFDPAKIPAKLAASGVTGTPDGISIIGGAAVPSYPCSAENVA 1283 Query: 144 ---------FHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 H V+++G PH + F + D+ G L +P F Sbjct: 1284 SGKLPEKAVVHAELSAAGESYRAAVLAVGTPHCVLFSSF-VDKIDVPGVGPLFENNPAFP 1342 Query: 195 EGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLG 252 +N RV SL +R WERG G T ACG+ ACA+ VA+ + ++VK+ G Sbjct: 1343 RRINTEFVRVAGRNSLKMRVWERGNGETPACGTGACAAAVAAVLNGFCPLDENITVKVRG 1402 Query: 253 GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G L++ + + V++TG A + G+++I Sbjct: 1403 GDLIVNYTGD-TVYLTGGAALVYTGEIEI 1430 >gi|58584775|ref|YP_198348.1| diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497789|sp|Q5GSB8|DAPF_WOLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|58419091|gb|AAW71106.1| Diaminopimelate epimerase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 259 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 99/261 (37%), Positives = 143/261 (54%), Gaps = 17/261 (6%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 M G GN ++ID R N + ++ + DQI++I + ++ D F+ I N D Sbjct: 9 MYGTGNNFVIIDSRS--INNLNWNYREIANQN--GCDQIIVITNS--SAADCFMHIYNAD 62 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKL 129 G EV+ CGN RCV + S + T E + IL + SI V+MG+P+ W Sbjct: 63 GGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKVGGRSIKVNMGKPLFKWHE 122 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 IPL+ D + P+ L++P V++GNPH +FFV+ ++ L S G L K Sbjct: 123 IPLSAKCDPL------HLPIELEMLKDPVAVNIGNPHMVFFVD-NISEIPLQSLGPKLEK 175 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSV 248 H +F + VN++IA+V + LR WERG G+TA+CGSAACA+++AS R SV Sbjct: 176 HTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSV 235 Query: 249 KMLGGGLLIEWHDNNHVFMTG 269 + GG LLIEW DN +FMTG Sbjct: 236 NLPGGKLLIEWPDN--IFMTG 254 >gi|213024498|ref|ZP_03338945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 95/209 (45%), Gaps = 9/209 (4%) Query: 76 SCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 CGNG RC RF+ + ++ T G +V D + V+MGEP + +P Sbjct: 2 QCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQVPF- 60 Query: 134 RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 + ++ VVSMGNPH + V+ ++ + + G +L H F Sbjct: 61 ----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVETLGPVLESHERF 115 Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253 E N+ +V E + LR +ERG G T ACGS ACA+V V V++ GG Sbjct: 116 PERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVELPGG 175 Query: 254 GLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 L I W H ++MTG A ++G + + Sbjct: 176 RLDIAWKGPGHPLYMTGPAAHIYDGFIHL 204 >gi|296117718|ref|ZP_06836302.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306] gi|295969449|gb|EFG82690.1| diaminopimelate epimerase [Corynebacterium ammoniagenes DSM 20306] Length = 298 Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 22/295 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ--- 56 + ++ + FAK G N ++++ ++ +D + AL D ++ + Q Sbjct: 4 ISTASLPFAKGHGTENDFIIVNDPEGKISLDADRVAALCDRRAGIGADGLLRVIRAQALV 63 Query: 57 -----------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRG 104 A D F+ N DGS + CGNG R ++ ++ +G Sbjct: 64 DNGEIDELAEGIAGDDWFMDYRNADGSIAEMCGNGTRVFAHWVVAQGLVSVPPRGAAGKG 123 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 I R G+ V + + + ++ F V MGN Sbjct: 124 ISFTVGTRAGAKPVTVHACDSRRADVSVEMGVPEVMG---LSTAQMAGFFYAGLGVDMGN 180 Query: 165 PH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 PH A D + F G+N+ + +++R +ERGVG T Sbjct: 181 PHLAATIPGLDAEALAELVLEQPVYDAEFFPHGLNVEVVTPLKDGEVNMRVFERGVGETR 240 Query: 224 ACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 +CG+ A+V A +V+V + GG + +E ++ + G ++ G Sbjct: 241 SCGTGTVAAAVSALADAGAVTGSVTVNVPGGQVQVEVREDGS-TLRGPSEIVATG 294 >gi|288920756|ref|ZP_06415056.1| diaminopimelate epimerase [Frankia sp. EUN1f] gi|288347832|gb|EFC82109.1| diaminopimelate epimerase [Frankia sp. EUN1f] Length = 311 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 120/305 (39%), Gaps = 37/305 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI--------HDFQ 56 V + K G GN +++ +++ + A+ D ++ + Sbjct: 11 VRYVKGHGTGNDFVILPDADGDLDLSVQLVRAICHRGTGVGADGVLRVVLVAAEPAAAAY 70 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF--TFETIRGILVAKENRDG 114 + F+ N DGS + CGNG+R R+L T G+ G Sbjct: 71 LGAARWFMDYRNADGSIAEMCGNGVRVFARYLVDAGYEMPGSLVIATRAGLRSVDVPPAG 130 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +SVDMG P +P+ VSMGNPHA+ F + D Sbjct: 131 DVSVDMGPPEFASGTVPVTV----------------VGREFAAVGVSMGNPHAVCFAD-D 173 Query: 175 LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 L +LA + P F +GVN+ + S + + +R +ERGVG TA+CG+ ACA Sbjct: 174 LGPSELARLDLGVPVFPAEAFPDGVNVEVVVP-SADGVAMRVFERGVGETASCGTGACAV 232 Query: 233 VVASGCL--HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 VA V V + GG L ++W + V + G A +G L +WI++ Sbjct: 233 AVAWAARVGGTPPSEVLVDLPGGRLTVDWRET-TVILRGPAVLVSDGVLRP---EWIRQA 288 Query: 291 EDDEA 295 + Sbjct: 289 TGVAS 293 >gi|89097875|ref|ZP_01170762.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911] gi|89087377|gb|EAR66491.1| diaminopimelate epimerase [Bacillus sp. NRRL B-14911] Length = 327 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 19/286 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA-----INALSTDDNTHFDQIMLIHDFQDASV 60 ++ K G GN L+ID T + I D D I+ A Sbjct: 3 IEILKCHGSGNDFLLIDEISKDYGFTEEQRRELAIALCRRDSELGADGILFTMKSDKA-- 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA +R+ N DGSE CGNG+RCV R++ K ET++ L ++ D + Sbjct: 61 DARMRVFNADGSEASMCGNGLRCVARYVCELFGLKEAIIETMKADLKVEKRPDIFPEIPT 120 Query: 121 GEPILDW-----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + +PL + + + ++ + + F V + A+ +D Sbjct: 121 YLVEISPVSFQIRDLPLILNQETLKNEKINSLSDSLHFT--ALAVPNPHLIAVCSKDDIQ 178 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ + +F +GVN+S + ES+ +RT+ERGVG T ACG+A AS + Sbjct: 179 SDLQKNISEHVNGPNELFPDGVNVSFIKPLKEESIYVRTFERGVGFTNACGTAMSASTLV 238 Query: 236 SGCLH--KTNRAVSVKMLGGGLL-IEWHDNN--HVFMTGEAKKEWE 276 S K R V V GG + I N + + G A + Sbjct: 239 SCLQGMNKLERPVDVYNNGGKVQCIAHESNGGYTIDLIGNATYMYR 284 >gi|86742196|ref|YP_482596.1| diaminopimelate epimerase [Frankia sp. CcI3] gi|86569058|gb|ABD12867.1| diaminopimelate epimerase [Frankia sp. CcI3] Length = 302 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 76/292 (26%), Positives = 115/292 (39%), Gaps = 35/292 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + F K G GN +++ ++T+D + AL D ++ + Sbjct: 18 LRFVKGHGTGNDFVLLPDPDGDLDLTADLVRALCDRRTGIGGDGVLRVVLCAAVPEAAGL 77 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDG 114 F+ N DGS + CGNG R R+L + F T G+ + + DG Sbjct: 78 AGRARWFMDYRNADGSVAEMCGNGARVFARYLVDAGYAQPGRFHVATRAGLRLVEAAVDG 137 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV-ED 173 ++VDMG P D VSMGNPHA+ F + Sbjct: 138 DVTVDMGPPR---------------IIDGPGAPVTVADRDFTATAVSMGNPHAVCFAGDL 182 Query: 174 DLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ + P+ F +GVN+ I + +R +ERGVG TA+CG+ ACA Sbjct: 183 DVAGLRRLDLTRPPSFSPVDFPDGVNVEIVVDR-PAGVAMRVFERGVGETASCGTGACAV 241 Query: 233 VVA-----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 VA V V + GGGL++ W V + G A+ ++G L Sbjct: 242 AVAWAARRGARPAGAPVEVEVDVPGGGLVVIWQP-ETVLLRGPAELVFDGVL 292 >gi|306836307|ref|ZP_07469288.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] gi|304567827|gb|EFM43411.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49726] Length = 281 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 97/295 (32%), Gaps = 33/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++I+ ++ + + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVIIEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 S D F+ N DGS + CGNG R +L S + +FT T G Sbjct: 61 AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-A 167 + + + + + V MGNPH A Sbjct: 121 TVHS-CNATAASVTVEMGPARV------------TGVSTASVAGESYAGLGVDMGNPHLA 167 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + F GVN + + +R +ERGVG T +CG+ Sbjct: 168 AVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGT 227 Query: 228 AACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A+ V V + GG + +E +D +TG + G+ + Sbjct: 228 GTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281 >gi|134098335|ref|YP_001103996.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|291004246|ref|ZP_06562219.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] gi|133910958|emb|CAM01071.1| diaminopimelate epimerase [Saccharopolyspora erythraea NRRL 2338] Length = 286 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 69/293 (23%), Positives = 107/293 (36%), Gaps = 35/293 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI-------HDFQDAS 59 F K G N +++ +T + AL D ++ + Sbjct: 15 FLKGHGTENDFVILPDPDGELKLTDSRVQALCDRRRGLGADGVLRVVRTAALEDAPDSVP 74 Query: 60 VD-AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSI 116 D F+ N DGS + CGNG+R +L + T G+ DG + Sbjct: 75 GDVWFMDYRNADGSVAEMCGNGVRVFANYLVHAGLAEPGEIPVGTRAGVRPVVTRADGRV 134 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VDMG L + V +GNPH E DL Sbjct: 135 TVDMGPAALFGR-----------------SRTAVGKENFPGVAVDLGNPHLACVTEADLD 177 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 DL+S + +F +GVN+ + T + +R +ERGVG T +CG+ A+ VA+ Sbjct: 178 GLDLSSQPPFDPQ--VFPKGVNIEFVQRTGPGRVRMRVYERGVGETRSCGTGTVAATVAA 235 Query: 237 G-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 T V + GG + +E + +TG A G+LD W + Sbjct: 236 LDADGATTGHRIVDVPGGTVEVEVTEQTS-TLTGPAVLVAAGRLD---ALWWE 284 >gi|330466445|ref|YP_004404188.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032] gi|328809416|gb|AEB43588.1| diaminopimelate epimerase [Verrucosispora maris AB-18-032] Length = 287 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 38/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM-LIHDFQDA----- 58 V F K G GN +++ ++T + + A+ D ++ ++ + Sbjct: 9 VKFTKGHGTGNDFVILPDPDGALDLTPELVAAICDRRRGLGGDGVLRVVRAAKHPDGAAL 68 Query: 59 --SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT----FETIRGILVAKENR 112 + F+ N DGS + CGNG R VRFL T G++ A+ + Sbjct: 69 AGDAEWFMDYWNSDGSFAEMCGNGARVFVRFLLDSGLATPIHGVLPVATRAGLVRARLDG 128 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + + L V +GNPH + + Sbjct: 129 EDIAVEMRRPRLYATSTAALGA------------------LTLPGTAVDVGNPHLVCPLP 170 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIA---RVTS--LESLDLRTWERGVGLTAACGS 227 L L +F GVN+ + +R +ERG T +CG+ Sbjct: 171 AGLELTGLDLTRAPGFDPTIFPSGVNVEFTADGEPLDGVDGHVLMRVYERGSAETLSCGT 230 Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGE 270 ACA + + + ++V + GG L + +N +++G Sbjct: 231 GACAVAAVALRDIARETGTIAVDVPGGRLTVTLT-DNSCWLSGP 273 >gi|326445009|ref|ZP_08219743.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 97/288 (33%), Gaps = 23/288 (7%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQD 57 FAK G N +++ ++ A+ L D I+ Sbjct: 9 PFAKGHGAENDFILLPDPHGLLDLGPGAVRRLCHRRTGIGADGILRAVHTTAVPEAAAMA 68 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGS 115 A F+ N DG+E Q CGNG+R R+ T T G+ R + Sbjct: 69 ADAVWFMDYRNPDGTEGQMCGNGIRLFARYLVGTGHAPPGPLVIATRAGLRRLDVPRRRT 128 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + +P HI V MGNPHA+ V+ DL Sbjct: 129 RFHGPVTVQMGRPRLP----------GPDHITVTAGTRTWPALHVDMGNPHAVALVD-DL 177 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 H + + + G + L LR ERG G T +CG+ ACA+V A Sbjct: 178 THPGPLTTPPAVEPAGAYPHGTTVEFVVRRGPRHLALRVHERGAGETRSCGTGACAAVAA 237 Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V GG L + H + + +TG A+ G + + Sbjct: 238 ATHHTVPEPGTWIVDTPGGRLTVTVHLDGTMALTGPAEITTHGTITLP 285 >gi|145295848|ref|YP_001138669.1| diaminopimelate epimerase [Corynebacterium glutamicum R] gi|166224256|sp|A4QEV1|DAPF_CORGB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|140845768|dbj|BAF54767.1| hypothetical protein [Corynebacterium glutamicum R] Length = 277 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQDA 58 + FAK N ++I ++T + + L D I+ + Sbjct: 5 IPFAKGHATENDFIIIPDEDARLDLTPEMVVKLCDRRAGIGADGILRVVKAADVEGSTVD 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R +L SR + +F+ T G+ + Sbjct: 65 PSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGVRHVDILQADQH 124 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDL 175 S + + IP D + + V MGNPH A Sbjct: 125 SAQVRVDMG----IPDVTGLSTCDIN---------GQVFAGLGVDMGNPHLACVVPGLSA 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-ASVV 234 F GVN+ I +++ +R WERGVG T +CG+ A+ Sbjct: 172 SALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACA 231 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A V V + GG + ++ D+ +TG + G++ I Sbjct: 232 ALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277 >gi|46446076|ref|YP_007441.1| putative diaminopimelate epimerase [Candidatus Protochlamydia amoebophila UWE25] gi|46399717|emb|CAF23166.1| putative diaminopimelate epimerase [Candidatus Protochlamydia amoebophila UWE25] Length = 269 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 29/285 (10%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F K G GN ++ D R + I L D I+L+ + A A +RI Sbjct: 5 FTKYVGCGNDFILFDNRNGKFPFSIPLIQQLCHRQWGVGADGIILLENSTIA--HARMRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGSE + CGNG+RC++ ++ S ++ ET +L A ++ L Sbjct: 63 FNADGSEAEMCGNGLRCLIDWMESLNILHSIYSIETNNHVLKAWKSASNITIEMGSPNKL 122 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +W +P++ + ++ G PH I F E ++ + L G Sbjct: 123 NWN-VPISFE----------------SKIYYVHSLNTGVPHIILFAE-NIEQFPLERMGP 164 Query: 186 LLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243 + HP++ +G N SI + ++ +RT+ERGV T ACG+ A A+ +A+ ++ + Sbjct: 165 FIRYHPLWKPDGTNFSIVQHLHGQTFMIRTYERGVEAETLACGTGATAAALAAAFQYRLS 224 Query: 244 RAVSVKMLGGG-LLIEW----HDNNHVFMTGEAKKEWEGKLDIKT 283 +S++ G L I + +V MTG A + G + +++ Sbjct: 225 APISMQTRSGICLEIGFTLLNQKFTNVTMTGPALAVFNGSIKLES 269 >gi|313899044|ref|ZP_07832571.1| diaminopimelate epimerase [Clostridium sp. HGF2] gi|312956243|gb|EFR37884.1| diaminopimelate epimerase [Clostridium sp. HGF2] Length = 273 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 11/278 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAF 63 M+ K G GN ++ D D + D +L+ Sbjct: 1 MIPVTKYHGCGNDFIITDWELLKHKNIEDFVKHVCDRHTGIGADGCILVKQKP-----LE 55 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVDMG 121 + N DGS CGNG+RC ++ + + ET+ G+ V + Sbjct: 56 MVFYNADGSRAPMCGNGIRCFAKYCYDEGIETAEEYDVETLAGVKHVTRVSLDPFQVRID 115 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 + W P + D + + M H + FV D + +D Sbjct: 116 --MGTWDDEPKSIQVDALKEPVMGYELPVGDKSVTVYSFFMSTVHTVVFVS-DAFAFDYN 172 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 G+ + H ++ E N++ ++ +L + T+ERGVG+T ACG+ ACA+ + Sbjct: 173 EIGHAICHHTLYREQTNVNFVQIVDAHTLQMVTYERGVGMTLACGTGACAAARIAHEKKG 232 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + G L I+ D HV M G A++ +G++ Sbjct: 233 CAANLKIILKRGELHIDIDDQQHVHMFGPAERILKGEV 270 >gi|227503447|ref|ZP_03933496.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] gi|227075950|gb|EEI13913.1| diaminopimelate epimerase [Corynebacterium accolens ATCC 49725] Length = 281 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 96/295 (32%), Gaps = 33/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++++ ++ + + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVIVEDFDAEAPLSPERVAALCDRRAGIGGDGLLRVVRAGALVDAGEL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 S D F+ N DGS + CGNG R +L S + +FT T G Sbjct: 61 AALPDGVDSADWFMDYRNADGSVAEMCGNGTRVFAHWLRSHDLVGEDAFTIGTRAGAKQV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-A 167 + + + + V MGNPH A Sbjct: 121 TVHS-CDATAASVTVEMGPARV------------TGVSTASVGGESYAGLGVDMGNPHLA 167 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + + F GVN + + +R +ERGVG T +CG+ Sbjct: 168 AVIPGLEPEALAAKDLTAPVYDESFFPGGVNFELVTPLREGHVHMRVFERGVGETQSCGT 227 Query: 228 AACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A+ V V + GG + +E +D +TG + G+ + Sbjct: 228 GTVAAATAALADAAQALGTVHVHVPGGEVTVEVYDGGT-RLTGPSAIVATGETSL 281 >gi|59727201|gb|AAW92128.1| diaminopimelate epimerase [Enterobacter asburiae] Length = 180 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 9/182 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV CGNG RC RF+ + ++ T G +V D + V+MG Sbjct: 61 YRIFNADGSEVNQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNMG 120 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 EP + ++P + ++ VVSMGNPH + V+ D+ + Sbjct: 121 EPNFEPSVVPF-----RANKAEKTYIMRAAEQTVLCGVVSMGNPHCVIQVD-DVETAAVE 174 Query: 182 SF 183 + Sbjct: 175 TL 176 >gi|213970235|ref|ZP_03398366.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] gi|301385895|ref|ZP_07234313.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13] gi|302059241|ref|ZP_07250782.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] gi|302130859|ref|ZP_07256849.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925116|gb|EEB58680.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1] Length = 285 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 115/293 (39%), Gaps = 15/293 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 +DF K GN +V+D + + + + D ++ + + Sbjct: 1 MDFVKYTAQGNDYIVLDPNKMAMDFDVELVRKICDRRTGIGADGVLY--GPHLNNGKLGL 58 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET-----IRGILVAKENRDGSISVD 119 + N DGS GNG+R R+L +S +FE + I V + V Sbjct: 59 EVYNSDGSACGKSGNGLRVFSRYLVDNDYVQSDSFEIWLSRLAQSIAVQRLPTHNLFLVS 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 +G LD +P+ K + + + V +GNPH + + Sbjct: 119 LGSFCLDSSKVPVMMDAKKTVLNETLHIAGREISIS---CVDIGNPHCVVLGQA-ADRAT 174 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G L+++H +F + N+ + S +++ TWERG G T A GS+ACA+ L Sbjct: 175 AELLGPLISQHSIFPDKTNVQFVNIVSSSRIEVETWERGSGYTLASGSSACAAAAVCHTL 234 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 + V+V M GG + + ++ + + G + G I + + K ++ Sbjct: 235 GLVDADVTVVMPGGMMSVFIDPDSTLNLIGSVTHVFSG---IFSYDFEKGMQN 284 >gi|66826259|ref|XP_646484.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4] gi|60474428|gb|EAL72365.1| hypothetical protein DDB_G0270030 [Dictyostelium discoideum AX4] Length = 355 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 124/341 (36%), Gaps = 67/341 (19%) Query: 6 VDFAKMEGIGNKILVID------MRGCHDNITSDAIN----ALSTDD-NTHFDQIMLIH- 53 ++F KM G GN +V + + G +T + I ++ FDQ+++I Sbjct: 13 INFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDD 72 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---------------KRKSFT 98 + D + + +INCDG+ CGNG+RC +++ Sbjct: 73 NPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQI 132 Query: 99 FETIRGILVA----------KENRDGSISVDMGEPILDW------KLIP--LARSFDKMD 140 ET GI+ K+N + V+MG P + + IP L Sbjct: 133 IETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIES 192 Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 + + V++G + F++ ++ L S K Sbjct: 193 YMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISD 252 Query: 201 IARVTS--------------------LESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 I + + R ERG G T ACG+ AC ++S Sbjct: 253 IIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKG 312 Query: 241 KTNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 N ++V+M GG LLI+W+ NN +F TG A ++ ++ Sbjct: 313 YCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQI 353 >gi|223985115|ref|ZP_03635211.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM 12042] gi|223962937|gb|EEF67353.1| hypothetical protein HOLDEFILI_02517 [Holdemania filiformis DSM 12042] Length = 269 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 104/283 (36%), Gaps = 18/283 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K +G GN L+ D D +++ + Sbjct: 1 MI-LEKYQGCGNDFLIADGSRTPVIDPQQVAALCDRHRGFGADGLIIARRDP-----LSM 54 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DG+ CGNG+RC V + + R + + S+ + EP Sbjct: 55 ELWNQDGTRAGMCGNGLRCFVHHAYRKGW-----IQADRSYRIGTGDGLRSVWICSTEPF 109 Query: 125 LDWKL--IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM-GNPHAIFFVEDDLYHYDLA 181 + IP + ++ + G PH + F D A Sbjct: 110 ICRVEAGIPDFDAKRMTNQPLLPGLLHAPFLSQQQSCSFWLGVPHTVLFTTD--PEVVSA 167 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + +HP F EG N+ AR+ L +RTWERGVG T ACG+ ACAS VA+ Sbjct: 168 EQARAIGRHPFFKEGTNVDFARLKENGELQVRTWERGVGWTLACGTGACASAVAAAIFGL 227 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 V+ GG L +E + +TG + + GK ++K Sbjct: 228 CPLPCKVRCPGGLLDVEQAPDKQCLLTGPS--VYIGKAEVKAC 268 >gi|218659714|ref|ZP_03515644.1| diaminopimelate epimerase [Rhizobium etli IE4771] Length = 227 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 111/224 (49%), Positives = 146/224 (65%), Gaps = 5/224 (2%) Query: 77 CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+P+ DW IPLA F Sbjct: 2 CGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGKPVFDWDRIPLAEEF 61 Query: 137 DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196 R IGP+++ L +P +SMGNPHAIF+V+ D+ YDLA FG LL HPMF E Sbjct: 62 HDTSRIELQIGPIDNPVLHSPSAMSMGNPHAIFWVDKDVMSYDLARFGPLLENHPMFPER 121 Query: 197 VNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM----LG 252 N+++A+VTS S+ RTWERG GLT ACGSAAC++ V++ +T R V + + Sbjct: 122 ANITLAQVTSPTSMTTRTWERGAGLTLACGSAACSAAVSAARTGRTGRRVMINVASAKPP 181 Query: 253 GGLLIEWHD-NNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 G L IEW + ++HV MTG A+ EW G+LD TG W + Sbjct: 182 GTLSIEWRERDDHVIMTGPAEWEWSGRLDPATGLWSGDADRGAE 225 >gi|46908247|ref|YP_014636.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. F2365] gi|67460306|sp|Q71Y02|DAPF_LISMF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|46881518|gb|AAT04813.1| diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. F2365] Length = 329 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 126/316 (39%), Gaps = 22/316 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53 M++ + F K+ G N ++D H ++ L + D I+ + Sbjct: 1 MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 59 KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCL--HKTNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280 A + L + ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNNILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 I T + + Y Sbjct: 299 IVTELTNEATAEQAQY 314 >gi|19553148|ref|NP_601150.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|62390783|ref|YP_226185.1| diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|24418359|sp|Q8NP73|DAPF_CORGL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|21324713|dbj|BAB99336.1| Diaminopimelate epimerase [Corynebacterium glutamicum ATCC 13032] gi|27452766|gb|AAO12272.1| diaminopimelate epimerase [Corynebacterium glutamicum] gi|41326121|emb|CAF20284.1| Diaminopimelate Epimerase [Corynebacterium glutamicum ATCC 13032] Length = 277 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 25/287 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIML------IHDFQDA 58 + FAK N ++I ++T + + L D I+ + Sbjct: 5 IPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTVD 64 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R +L SR + +F+ T G+ + Sbjct: 65 PSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQH 124 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDL 175 S + + IP D + + V MGNPH A Sbjct: 125 SAQVRVDMG----IPDVTGLSTCDIN---------GQVFAGLGVDMGNPHLACVVPGLSA 171 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-ASVV 234 F GVN+ I +++ +R WERGVG T +CG+ A+ Sbjct: 172 SALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACA 231 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A V V + GG + ++ D+ +TG + G++ I Sbjct: 232 ALADAGLGEGTVKVCVPGGEVEVQIFDDGS-TLTGPSAIIALGEVQI 277 >gi|218885665|ref|YP_002434986.1| diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756619|gb|ACL07518.1| Diaminopimelate epimerase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 282 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 114/289 (39%), Gaps = 25/289 (8%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLI-HDFQD 57 ++ V K+ G GN + ID R + D ++ D ++ + +D Sbjct: 4 KARTVPIHKLHGCGNDFVFIDNRALGLPVAAMPDWARSVCRRAFGVGADGLVFLDETPKD 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSI 116 D N DGS + CGN RC F T G++ A+ + + Sbjct: 64 REGDYIWHFYNADGSRAEMCGNASRCAALLAVELGFAGPKHVFGTDAGLIRAEADVAAGM 123 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + P + + L D V+ G PHA+ F + D Sbjct: 124 AKVELTP---PRDLTLGIELDL------------GEGRDMVHFVNTGVPHAVVF-KRDAS 167 Query: 177 HYDLASFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 D+ + G L +H F G N + A+V ++ LRT+ERGV T ACG+ A A Sbjct: 168 TVDVRTLGAALRRHAHFAPAGTNANFAQVIDRRNIHLRTFERGVEDETYACGTGAAAGAF 227 Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + L V+V+ GG L I + VF++G+A + + G++ ++ Sbjct: 228 IAHALGLAESTVNVRSSGGEILGISI-EGGSVFLSGKAVRVFSGEMFLE 275 >gi|254854376|ref|ZP_05243724.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503] gi|300763677|ref|ZP_07073674.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017] gi|258607775|gb|EEW20383.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-503] gi|300515413|gb|EFK42463.1| diaminopimelate epimerase [Listeria monocytogenes FSL N1-017] Length = 329 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 125/316 (39%), Gaps = 22/316 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53 M++ + F K+ G N ++D H ++ L + D I+ + Sbjct: 1 MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 59 KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 I T + + Y Sbjct: 299 IVTELTNEATAEQAQY 314 >gi|213018750|ref|ZP_03334558.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995701|gb|EEB56341.1| diaminopimelate epimerase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 251 Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 19/262 (7%) Query: 11 MEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G GN ++ID R + + I + DQ+++I + + F+ I N Sbjct: 1 MHGTGNSFVIIDSRSANNLDWNYRQIADQGS-----CDQVIIITMS--NAANCFMHIYNA 53 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWK 128 DGS + CGN RCV + + T E IL + D SI V+MG+P+L W Sbjct: 54 DGSRAEMCGNAARCVGYLIMLEKGTEYITIELINNRILECFKVGDKSIKVNMGKPLLKWN 113 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 IPL+ D + P+ L+ P V++GNPH +FFV+ ++ L + G L Sbjct: 114 EIPLSCECDPL------YLPIELEMLKEPVAVNIGNPHIVFFVD-NISEIPLQNLGPKLE 166 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVS 247 H +F + N+SIA++ ++LR WERG G+TA+CGSAACA+ VAS + S Sbjct: 167 NHELFPQKTNVSIAQIEKSGEINLRVWERGTGITASCGSAACAAFVASILRKCLATKQTS 226 Query: 248 VKMLGGGLLIEWHDNNHVFMTG 269 V + GG LLIEW N + MTG Sbjct: 227 VHLPGGHLLIEWSKN--ILMTG 246 >gi|295424950|ref|ZP_06817662.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664] gi|295065389|gb|EFG56285.1| diaminopimelate epimerase [Lactobacillus amylolyticus DSM 11664] Length = 333 Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 136/321 (42%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 M K+ G N ++D + +T + + S+D D +++++ Sbjct: 1 MTQLLKVHGSQNHFFILDQTELDEPLTDEQLRNFTKKITSSDTGILDGSDGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L + + F +T+ A Sbjct: 61 SHALAQMRVINADGSEASMCGNGLRTVARYLFEQFHQDHFMVDTMN----ANLRVSKQAD 116 Query: 118 VDMGEPILDWKLIPLA-----RSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI-FF 170 + G P ++ P++ FD + R V L+ +++ NPH I F Sbjct: 117 LAEGVPAFAVEISPVSFANEKLPFDNVGLRRIIDQYVPELYPGLKFTALAVPNPHLISFM 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G +P F +GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 SQKQIEGPILGELGEKLNQDNPYFPDGVNVNFAQIIDRNQLFVRTFERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL--- 279 A+ +A L + N+ + V GG + H ++ + + G A ++ Sbjct: 237 SATSLALCLTHPDLGQFNQKIDVYNPGGKVQTIVHYDHDCYWIELIGNATFTARIEIGED 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ + I + ++ AY Sbjct: 297 DLRQANFDNVKITETDEQTAY 317 >gi|213649578|ref|ZP_03379631.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 223 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 7/212 (3%) Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 S + + L ++ T G +V D + V+MGEP + + Sbjct: 18 KSRSAAMARAVSLRFVRLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNMGEPNFEPAQV 77 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 P + ++ VVSMGNPH + V+ ++ + + G +L H Sbjct: 78 PF-----RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVD-NVDTAAVETLGPVLESH 131 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 F E N+ +V E + LR +ERG G T ACGS ACA+V V V++ Sbjct: 132 ERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVAVGIQQGLLAEEVRVEL 191 Query: 251 LGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 GG L I W H ++MTG A ++G + + Sbjct: 192 PGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 223 >gi|66826261|ref|XP_646485.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4] gi|60474429|gb|EAL72366.1| hypothetical protein DDB_G0270032 [Dictyostelium discoideum AX4] Length = 357 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 118/342 (34%), Gaps = 68/342 (19%) Query: 6 VDFAKMEGIGNKILVIDMRGCH-----------DNITSDAINALSTDDNTHFDQIMLI-H 53 ++F KM+G GN +V + + I+ DQ+++I Sbjct: 14 INFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGFTKKLSHRKLGIGCDQLIIIDD 73 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---------------KRKSFT 98 + D + + +INCDG+ CGNG+RC +++ + Sbjct: 74 NPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIIDNKVLSKNLKEQLNFDGDDKIEQI 133 Query: 99 FETIRGILVA------------KENRDGSISVDMGEPILDWKLI------PLARSFDKMD 140 ET GI+ K+ +++ + I L++ Sbjct: 134 IETKSGIVKTYPLLKHHLNNKEKDVIMVKVNMGTSKISRLINEIDYNIPKTLSKQSPLES 193 Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 + + VS+G + F++ ++ L S +K M + Sbjct: 194 YMYTIDIGLPYCSKLECVYVSVGVNQCVVFIDRNIELGYLDSSYGDFSKFSMINIQEISD 253 Query: 201 IARVTSLESLDL--------------------RTWERGVGLTAACGSAACASVVASGCLH 240 I + +D+ R ERG G T ACG+ AC VAS Sbjct: 254 IIQSNVNGFVDIANVEFVIQSPQDKLENKVISRVVERGSGETLACGTGACGVAVASILKG 313 Query: 241 KTNRAVS--VKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGKL 279 N V+M GG LLI+W NN +F TG A ++ ++ Sbjct: 314 YCNENTESIVEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQI 355 >gi|254831740|ref|ZP_05236395.1| diaminopimelate epimerase [Listeria monocytogenes 10403S] Length = 329 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L + D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + K + + F+ VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTV 181 Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283 + L K ++V GG + + + + + G A G + D T Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYESDTVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATPEQAQY 314 >gi|47093188|ref|ZP_00230962.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858] gi|254931814|ref|ZP_05265173.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262] gi|47018439|gb|EAL09198.1| diaminopimelate epimerase [Listeria monocytogenes str. 4b H7858] gi|293583368|gb|EFF95400.1| diaminopimelate epimerase [Listeria monocytogenes HPB2262] gi|328466359|gb|EGF37516.1| diaminopimelate epimerase [Listeria monocytogenes 1816] gi|328472755|gb|EGF43606.1| diaminopimelate epimerase [Listeria monocytogenes 220] gi|332312451|gb|EGJ25546.1| Diaminopimelate epimerase [Listeria monocytogenes str. Scott A] Length = 329 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 22/316 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53 M++ + F K+ G N ++D H ++ L + D I+ + Sbjct: 1 MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 59 KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 + T + + Y Sbjct: 299 VVTELTNEATAEQAQY 314 >gi|726355|gb|AAC44326.1| diaminopimelate epimerase [Yersinia pestis] Length = 198 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 9/191 (4%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + + + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+ + ++ + T G ++ D + V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVRLKGLTNKREISVSTQTGRMILSVTEDEQVCVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +P + + + + H L VVSMGNPH + V+ D+ ++A Sbjct: 121 PDFEPQTVPFRAA---KAQKTYILRAAEHTVLCG--VVSMGNPHCVMQVD-DVSVANVAL 174 Query: 183 FGNLLAKHPMF 193 G +L H F Sbjct: 175 LGPVLENHERF 185 >gi|229544305|ref|ZP_04433364.1| diaminopimelate epimerase [Bacillus coagulans 36D1] gi|229325444|gb|EEN91120.1| diaminopimelate epimerase [Bacillus coagulans 36D1] Length = 331 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 75/292 (25%), Positives = 123/292 (42%), Gaps = 27/292 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNTHFDQIMLIHDFQDASV 60 V K G GN L+ID +T D D D ++ + + Sbjct: 3 VKLIKCHGSGNDFLLIDETEISAPLTDDIRKKMALSFCRRDAGLGADGLLFV--SESQQA 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-----ENRDGS 115 DA +R+ N DGSE CGNG+RCV R+++ + + ET++ L A+ + + Sbjct: 61 DAKMRVFNADGSEASMCGNGLRCVARYVSEKRGKDDLLIETMKANLYARKAEPLLDGIPT 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 V++ D +P+ + + + + + V++ NPH I FVE++ Sbjct: 121 FRVEISPVSFDLNKLPMHIDKEVLINEPVKALSED----LSFTAVAVPNPHLIAFVENEG 176 Query: 176 YHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + D + P +F +GVN+S A+ L +RT+ERGVG T ACG+A AS Sbjct: 177 FRSDTQKTLSEYVNGPNDIFPDGVNVSFAKPIGENGLYVRTFERGVGFTNACGTAMSASS 236 Query: 234 VASGCLHK--TNRAVSVKMLGGGL-----LIEWHDN--NHVFMTGEAKKEWE 276 + + L + V GG + IE + + G A +E Sbjct: 237 LVACLLRLRPFGEMIDVFNNGGKVRCFVQKIEKEGEPAYTIDLIGNATYLYE 288 >gi|269928839|ref|YP_003321160.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745] gi|269788196|gb|ACZ40338.1| diaminopimelate epimerase [Sphaerobacter thermophilus DSM 20745] Length = 274 Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 110/289 (38%), Gaps = 27/289 (9%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K+ G GN +V+ + +++ A + + D I+++ + + A I Sbjct: 5 LPFMKLSGAGNDFIVLAEEDAADLDLSWLARRLCTRALSLGADGIIVVGAERSDA--ARI 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 R N DGS + CGNG RC R+ R + F T G L DG V M E Sbjct: 63 RFYNPDGSLAEMCGNGSRCAARYAVERGLVQGPEFHLLTDSGDLPVMARPDGRFEVVMPE 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 P + + +G PHA+ FV D+ + Sbjct: 123 PEQVRFD---------------AMTVEAGEEQWPLHALWVGVPHAVVFV-PDVERHSDEH 166 Query: 183 FGNLLA----KHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG 237 L F G N++ V + RT+ERGV LT ACG+ A A+ Sbjct: 167 LTALGRALRYDDKHFPAGTNVNFVEVAPDRPIRQRTYERGVEALTKACGTGATATAFVVH 226 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 L V + + GG L ++ + +++ G+A+ G L + W Sbjct: 227 TLLDRPWPVDLVVDGGRLTVD-QRDGRLWLIGDARIIARGTLSPEALAW 274 >gi|311742266|ref|ZP_07716075.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272] gi|311313894|gb|EFQ83802.1| diaminopimelate epimerase [Aeromicrobium marinum DSM 15272] Length = 272 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 62/286 (21%), Positives = 107/286 (37%), Gaps = 28/286 (9%) Query: 6 VDFA--KMEGIGNKILVIDMRGCHD--NITSDAINALS-TDDNTHFDQIMLIHDFQ---- 56 + F+ K G N +++ ++ + AL D ++ + Sbjct: 1 MTFSWLKGHGTENDFVLLPDHDGTVHGDLDPTFVAALCHRRRGIGADGVLRVVRSAATGL 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 ++ + F+ N DGS + CGNG+R L + LV + D I Sbjct: 61 PSAAEWFMDYRNADGSTSEMCGNGIRVFALHLVQEG-----LVDPSGPFLVGTRDGDKQI 115 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +VD +D + R + V GNPHA+ FV+D Sbjct: 116 TVDGDLVTVDM----------GVAEVRGTTKVTVDDHVWEAQDVRTGNPHAVAFVDDLAE 165 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + ++ +GVN+ R + + +R ERG G T +CG+ ACA+ VA Sbjct: 166 AGALTAQPEYDEV--VYPDGVNIEFVRRLGADHIAIRIHERGSGETRSCGTGACAAAVAH 223 Query: 237 GCLHK--TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 G H V + GG + + + V + G A+ G+++ Sbjct: 224 GLDHPSPVGSTCRVDVPGGTVWVTRGPDGAVALAGPAEIVARGEME 269 >gi|328885515|emb|CCA58754.1| Diaminopimelate epimerase [Streptomyces venezuelae ATCC 10712] Length = 268 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 110/287 (38%), Gaps = 38/287 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------ASVDAFIRIINC 69 +++ ++ + L D ++ + + F+ N Sbjct: 1 MIVPDAENAVDLPPAVVARLCDRRAGIGGDGLLHVVRSAAHPEARHMADEAEWFMDYRNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVAKENRDGSISVDMGEPILDW 127 DGS + CGNG+R R+L + T G+ ++DGS++V MG +L Sbjct: 61 DGSVAEMCGNGVRVFARYLEHAGHVTAGRLAVATRGGVKHVHLDKDGSVTVAMGRAVLAE 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + + V+MGNPHA+ FVE DL H Sbjct: 121 AGVTVTVDGR----------------SWPARNVNMGNPHAVAFVE-DLDHAGNLFTEPPY 163 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-----KT 242 ++ +GVN+ + +R ERG T +CG+ ACA VA+ +T Sbjct: 164 EPAAVYPDGVNIEFVADRGPRHVAMRVHERGAAETRSCGTGACAVAVATARRDGADPAET 223 Query: 243 NRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 V +V +LGG L+I H + + MTG A EG +D W+ Sbjct: 224 GTPVTYTVDVLGGTLVITEHPDGQIDMTGPAVIVAEGTVDP---AWL 267 >gi|217963835|ref|YP_002349513.1| diaminopimelate epimerase [Listeria monocytogenes HCC23] gi|254767109|sp|B8DBR3|DAPF_LISMH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|217333105|gb|ACK38899.1| diaminopimelate epimerase [Listeria monocytogenes HCC23] gi|307571594|emb|CAR84773.1| dapF [Listeria monocytogenes L99] Length = 329 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGC-----HDNITSDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D D +D L + D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175 + + + + ++ + L F VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDTELAFSAVSVPNPHLITFVDQSV 181 Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKT 283 + L ++V GG + + ++ + + G A +G + DI T Sbjct: 242 LIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLIGNATFVSKGSVRYENDIVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATAEQALY 314 >gi|313618001|gb|EFR90150.1| diaminopimelate epimerase [Listeria innocua FSL S4-378] Length = 329 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + K + + F+ VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFVDQTV 181 Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283 + L K ++V GG + + + + + G A G + D T Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYERDAVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATPEQAQY 314 >gi|16801192|ref|NP_471460.1| diaminopimelate epimerase [Listeria innocua Clip11262] gi|21362476|sp|Q929Z7|DAPF_LISIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|16414640|emb|CAC97356.1| lin2126 [Listeria innocua Clip11262] Length = 329 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 125/313 (39%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + K + + F+ VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDSELAFSAVSVPNPHLITFVDQTV 181 Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIKTGKWI 287 + L K ++V GG + + + + + G A G + + G Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYERGTVT 301 Query: 288 ----KKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATPEQAQY 314 >gi|16804057|ref|NP_465542.1| diaminopimelate epimerase [Listeria monocytogenes EGD-e] gi|224501181|ref|ZP_03669488.1| diaminopimelate epimerase [Listeria monocytogenes FSL R2-561] gi|284802464|ref|YP_003414329.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578] gi|284995606|ref|YP_003417374.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923] gi|21362467|sp|Q8Y5N9|DAPF_LISMO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|16411471|emb|CAD00096.1| lmo2018 [Listeria monocytogenes EGD-e] gi|284058026|gb|ADB68967.1| diaminopimelate epimerase [Listeria monocytogenes 08-5578] gi|284061073|gb|ADB72012.1| diaminopimelate epimerase [Listeria monocytogenes 08-5923] Length = 329 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 126/313 (40%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D G + + +D L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + K + + F+ VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTV 181 Query: 176 YHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDRQETLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283 + L K ++V GG + + + + + G A G + D T Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGDISLQLIGNATFVSTGSVSYESDTVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATPEQAQY 314 >gi|295395414|ref|ZP_06805613.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030] gi|294971736|gb|EFG47612.1| diaminopimelate epimerase [Brevibacterium mcbrellneri ATCC 49030] Length = 300 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 98/297 (32%), Gaps = 31/297 (10%) Query: 5 MV--DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ----- 56 M+ K G N +++ + + L+ D ++ + + Sbjct: 1 MIDGQLVKGHGTANDFVLLHDPNGEHELDPARVRELADRRTGIGGDGVIRVIRSEALGEE 60 Query: 57 ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A + F+ N DGS + CGNG+R +L + + +F + Sbjct: 61 AGDVAHGAGAEWFMDYRNADGSIAEMCGNGVRVFAHYLRTYGLVQDQSFAVGTRAGIKHV 120 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH--IGPVNHLFLRNPFVVSMGNPHAI 168 + D W + + + + F + R V MGNPH + Sbjct: 121 T----VIPDPLGGDTPWYKVDMGKWQLPGGGEAFDATVETTGVRVARPGLTVDMGNPHTV 176 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-----LDLRTWERGVGLTA 223 + A P G N+ + L +R ERGVG T Sbjct: 177 VALAH-AEELQAAKLHEPPHVEPTPPAGTNVEYIVIEPDNDPTTGTLRMRVHERGVGETY 235 Query: 224 ACGSAACASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 ACG+ ACAS +A+ + +V GG + IE V ++G A +E Sbjct: 236 ACGTGACASALAAYVWAGRGPQAPTTWTVHQPGGAVRIEIT-GETVALSGPAVITYE 291 >gi|282855994|ref|ZP_06265285.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455] gi|282586213|gb|EFB91490.1| diaminopimelate epimerase [Pyramidobacter piscolens W5455] Length = 301 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 115/287 (40%), Gaps = 29/287 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN---ITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 + ++F K+ G GN + +DM + A + D ++++ A Sbjct: 29 TTMEFWKINGNGNDFITLDMLAAQKPAHELAELARRLCRRRASVGADGLLIVEPS--AGA 86 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKEN-RDGSISV 118 +R+ N DGSE + CGNG RC+ RF R TFET+ G++ A+ I + Sbjct: 87 HFRMRLFNADGSEAEMCGNGARCIARFAYERGVAPAEMTFETLAGVMRARVEGSFAEIDL 146 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 DW PL + +G PH + F ++L Sbjct: 147 GEQSFAPDWIDRPLTMD----------------GAAFRSCFLWVGVPHLVLFAPEELSRD 190 Query: 179 DLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS 236 D G +F +G N++ AR L T+ERGV LT +CG+ + A+ +++ Sbjct: 191 DCRRIGRAFRADASLFPQGCNVNFARPVGRGELSAVTYERGVEDLTDSCGTGSVAAALSA 250 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD-NNHVF---MTGEAKKEWEGKL 279 G L + + V GG + + + F + G+ +G+L Sbjct: 251 GLLFGMDSPIEVHNPGGTNRVAFERLDGTRFRTVLGGDTAVVAKGEL 297 >gi|254825491|ref|ZP_05230492.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194] gi|293594733|gb|EFG02494.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-194] Length = 329 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 125/316 (39%), Gaps = 22/316 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53 M++ + F K+ G N ++D H ++ L + D I+ + Sbjct: 1 MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 59 KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 + T + + Y Sbjct: 299 VVTELTNEATAEQGQY 314 >gi|313623006|gb|EFR93299.1| diaminopimelate epimerase [Listeria innocua FSL J1-023] Length = 329 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 124/313 (39%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + K + + F+ VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFNAESLPMNVGVEKLFNQVIPELDSELAFSAVSVPNPHLITFVDQTV 181 Query: 176 --YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQATLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL----DIKT 283 + L K ++V GG + + + + + G A G + D T Sbjct: 242 LIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEAGEISLQLIGNATFVSTGSVSYESDTVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATPEQAQY 314 >gi|226224615|ref|YP_002758722.1| diaminopimelate epimerase [Listeria monocytogenes Clip81459] gi|259595058|sp|C1KWW2|DAPF_LISMC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|225877077|emb|CAS05788.1| Putative diaminopimelate epimerase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 329 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 126/316 (39%), Gaps = 22/316 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53 M++ + F K+ G N ++D H ++ L + D I+ + Sbjct: 1 MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGILYVT 58 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 59 KSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATS 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVE 172 + + + + ++ + L F VS+ NPH I FV+ Sbjct: 119 LGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVD 178 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 179 QAVLDSNKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMS 238 Query: 231 ASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----D 280 A + L ++V GG + + + + + G A +G + D Sbjct: 239 ACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYEND 298 Query: 281 IKTGKWIKKNEDDEAY 296 + T + ++ Y Sbjct: 299 VVTELTNEATDEQGQY 314 >gi|300858663|ref|YP_003783646.1| diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|300686117|gb|ADK29039.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis FRC41] gi|302206371|gb|ADL10713.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis C231] gi|302330927|gb|ADL21121.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis 1002] gi|308276613|gb|ADO26512.1| Diaminopimelate epimerase [Corynebacterium pseudotuberculosis I19] Length = 297 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 98/295 (33%), Gaps = 34/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++I+ +T I+A+ D ++ + Sbjct: 11 ISFAKGHGTENDFVIIEDLDAKLPLTPQLISAICDRRAGVGADGVLRVAHVGSLLASGVL 70 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108 D F+ N DGS + CGNG R +L SR + F+ T G Sbjct: 71 TQAPEGLDPSDYFMDYYNADGSAAEMCGNGTRVFAHWLRSRALVDVDDFSIGTRAGARTV 130 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + S + + + V MGNPH Sbjct: 131 SVHAF-SATDADVSVDMGPAEV------------TGVSTCRIGTASYAGMGVDMGNPHLA 177 Query: 169 FFVEDDLYHYDLA-SFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAACG 226 V + F EGVN+ + + + +R +ERGVG T +CG Sbjct: 178 CVVPGLTPQALAEVDLVQPVVDGEFFPEGVNVELLTELDQQSQIHMRVYERGVGETRSCG 237 Query: 227 SAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + A+ A + V V + GG + + + V + G +K G+LD Sbjct: 238 TGTVAAARSALADAGLVDGHVVVHIPGGSVSVTIQGDTSV-LRGPSKIVAWGQLD 291 >gi|257056740|ref|YP_003134572.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017] gi|256586612|gb|ACU97745.1| diaminopimelate epimerase [Saccharomonospora viridis DSM 43017] Length = 277 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 115/295 (38%), Gaps = 34/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHD-------FQD 57 ++F K G N +++ +T + AL D ++ + D Sbjct: 4 IEFLKGHGTQNDFVLLPDPDASLELTPQRVAALCDRRRGLGADGVLRVVRSAALDAGPSD 63 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGS 115 + + F+ N DGS + CGNG+R R+L F T G + + D S Sbjct: 64 SEAEWFMDYRNADGSIAEMCGNGVRVFARYLVEAGLEAGPEFPVGTRAGDRHVRVHDDLS 123 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 ++V MG + + + + + V +GNPH + ++D Sbjct: 124 VTVHMGAATITGTSVAVVGGRE-----------------LSGVAVDVGNPHLVSVLDD-- 164 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 +L +F EGVNL V E L +R +ERGVG T ACG+ A+V A Sbjct: 165 DVDELDLRDAPRYDTEVFPEGVNLEFVNVLGSEELRMRVYERGVGETRACGTGTVAAVAA 224 Query: 236 SGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + L + +V + GG + + +TG A+ +G+LD W + Sbjct: 225 ALHLRGVDTGESTVDIPGGRVSVTV-GKGVSTLTGPAEFVAKGELD---RAWWEA 275 >gi|289177401|gb|ADC84647.1| Diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis BB-12] Length = 357 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 33/301 (10%) Query: 1 MQSSMVDFAKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF---- 55 + M+ K +G GN + D G H D I D ++ I Sbjct: 60 LPEHMI---KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVA 116 Query: 56 ----------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI 105 + V+ F+ N DG+ + CGNG R +FL + + E Sbjct: 117 DLDGHDAQKMRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLE---LEEGDAF 173 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + I+ P L +L + S+ D + + V MGN Sbjct: 174 KLGTRAGVKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDMGN 233 Query: 165 PHAIFFVEDDLYHYDLA---SFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTW 215 PH + VED + P G N+ AR L +R + Sbjct: 234 PHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRVY 293 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 ERG G T ACG+ CA+ + + + +++ GG + ++ D+ V +TG A Sbjct: 294 ERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALTA 351 Query: 276 E 276 E Sbjct: 352 E 352 >gi|297160946|gb|ADI10658.1| diaminopimelate epimerase [Streptomyces bingchenggensis BCW-1] Length = 308 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 73/288 (25%), Positives = 110/288 (38%), Gaps = 17/288 (5%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHD----NITSDAINALS-TDDNTHFDQIMLI-HDFQDA 58 M DF K + +GN L++D RG +A+ L D ++ D Sbjct: 1 MGDFVKYQALGNDYLIVDPRGGGTALGTEPVPEAVRLLCDRHRGVGADGLLFGPLDAPRP 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKE--N 111 A +RI N DGSE GNG+R +L R+ FT T G + Sbjct: 61 GTAAPLRIFNADGSECGMSGNGLRMFALYLGEHYVREWRTGTPFTVRTPGGDAEVRIMDV 120 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 DG + V MG GP + + + + + +G PH + Sbjct: 121 TDGRVCVGMGRARFTTGGGTDGGGAAATVVPLAGAGPGDEVTVTD---LHLGVPHTVVLR 177 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + + + G LA HP EG N+ RV +LD+ WER G A GS ACA Sbjct: 178 DA-IDGELVRRLGPALAWHPRHPEGTNVEFVRVHDDRTLDIAVWERVAGPVPASGSGACA 236 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + V+V+M GG + + + + G A++ G L Sbjct: 237 AAAVARARGLVGPDVTVRMPGGEVDVSVARDGRISSVGTAQEVMTGVL 284 >gi|226227017|ref|YP_002761123.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27] gi|259595056|sp|C1A8U3|DAPF_GEMAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226090208|dbj|BAH38653.1| diaminopimelate epimerase [Gemmatimonas aurantiaca T-27] Length = 277 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 98/290 (33%), Gaps = 32/290 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNIT--SDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + F KM G GN + D R ++ +AI A+ + D ++++ Q+ D Sbjct: 1 MSFVKMTGSGNDFVFFDGRTTPIDLVTQPEAIKAICNRYNGIGADGLVVLEPLQE-EADV 59 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG+ CGN C + G + DG ++ + Sbjct: 60 RVHYYNSDGTAADLCGNATLCSTAISAQWGITSASGMRLATGAGLINSRIDGLPAIALQP 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +P+A P R F V G PH + ED + Sbjct: 120 ITDIRPDMPIA--------------PATAQGRRVGFAV-AGIPHLVILCEDADAVDVAGA 164 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241 L G N++ S RT+ERGV T ACG+ A A+ V Sbjct: 165 GPALRRHEATGPAGANVNWVSPRPDGSWRYRTFERGVEGETLACGTGAVATAVLLRSWGL 224 Query: 242 TN-RAVSVKMLGG-GLLIEWH----------DNNHVFMTGEAKKEWEGKL 279 ++ +++ G + ++ + + GE + + G++ Sbjct: 225 SDGATTTIRTSSGRDVEVDLEPLTAPDGRSLEGFRPTLRGEGRVVFRGEI 274 >gi|313632513|gb|EFR99521.1| diaminopimelate epimerase [Listeria seeligeri FSL N1-067] Length = 332 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 26/316 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L + D I+ + Sbjct: 2 ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A ++++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLAEAKVETMKAILDVKKASSLGF 121 Query: 117 SVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + P + + + VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVNFKPESLPMNLPVEKLINQVVPELDAELAFSAVSVPNPHLIAFVDQAV 181 Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + ++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNN----HVFMTGEAKKE------WEG-KLD 280 + L + ++V GG + + ++ + + G A ++G +++ Sbjct: 242 LIKKMLDRDVLETPLNVYNDGGRVQVTAKEDAKGELSLQLIGNATFVNVGTVSYDGDEVE 301 Query: 281 IKTGKWIKKNEDDEAY 296 T + + +Y Sbjct: 302 PLTNE---ATPEQASY 314 >gi|254827095|ref|ZP_05231782.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165] gi|258599478|gb|EEW12803.1| diaminopimelate epimerase [Listeria monocytogenes FSL N3-165] Length = 329 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L ++ D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSN 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175 + + + + ++ + L F VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAV 181 Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKT 283 + L ++V GG + + + + + G A +G + DI T Sbjct: 242 LIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYENDIVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATAEQAQY 314 >gi|119718061|ref|YP_925026.1| diaminopimelate epimerase [Nocardioides sp. JS614] gi|119538722|gb|ABL83339.1| diaminopimelate epimerase [Nocardioides sp. JS614] Length = 279 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 33/284 (11%) Query: 7 DFAKMEGIGNKILVIDMRGCHD--NITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 F K G N +++ ++++D + AL D ++ + F Sbjct: 14 PFLKGHGTENDFVLLPDLDGSLHGDLSADRVRALCDRHAGIGGDGVLRVLRTDAG---WF 70 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG+R VR L + +T G+ V + I+ DM Sbjct: 71 MDYRNADGSIAEMCGNGIRVFVRHLVEEGLADPGQPIEVDTRDGVKVLTVDG-DLITADM 129 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-DLYHYD 179 G P + + + V MGNPHA+ FV+ D + Sbjct: 130 GRPRVLGETV-----------------VGVGTVSWPARHVDMGNPHAVAFVDSLDPHGPV 172 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG-- 237 F +G N+ + +R ERG G T +CG+ ACA +VA+ Sbjct: 173 GPLLDPPSRDPETFPDGANVEFVVRRGERHVAMRVHERGSGETRSCGTGACAVMVAAAVA 232 Query: 238 ---CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + A V + GG L + W ++ V +TG A G Sbjct: 233 DGARPSGADVAYRVDVPGGTLTVTWTADDRVLLTGPAVIVARGT 276 >gi|297559654|ref|YP_003678628.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844102|gb|ADH66122.1| diaminopimelate epimerase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 271 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 62/291 (21%), Positives = 109/291 (37%), Gaps = 36/291 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + FAK G N +++ ++T +A+ L D ++ + + Sbjct: 1 MRFAKGHGTENDFVILPDPDGELDLTEEAVRLLCDRRAGIGADGVLRVVRTRALGEALAP 60 Query: 57 ----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKE 110 + F+ N DGS + CGNG+R R+L + FE T G + Sbjct: 61 AARTAERSEWFMDYRNADGSVAEMCGNGVRVFARYLLHAGLVEGDRFEVGTRDGAKEVQV 120 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 DG I++DMG + + + +S+GNPH Sbjct: 121 EADGGITIDMGRVEMQG-----------------TSSAKLARQVVHGEQISVGNPHLACE 163 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V + DL L F G N+ + R + L++R +ERG G T +CG+ Sbjct: 164 VTVPVAEVDLGELPVLD--VEAFPAGANVEVYREVAPGVLEMRVYERGSGETRSCGTGIV 221 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A+ + V++ GG + + ++G A EG+ ++ Sbjct: 222 AAAAAATPRGE-GATWRVRVPGGECTVFLDADG-ARLSGPAVIVAEGETNL 270 >gi|326333220|ref|ZP_08199467.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1] gi|325948864|gb|EGD40957.1| diaminopimelate epimerase [Nocardioidaceae bacterium Broad-1] Length = 283 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 64/295 (21%), Positives = 109/295 (36%), Gaps = 41/295 (13%) Query: 10 KMEGIGNKILVIDMRGCHD--NITSDA----INALSTDD-NTHFDQIMLI--------HD 54 K G N +++ +++ + + AL D I+ + D Sbjct: 7 KGHGTENDFVLLPDLDGSVHGSLSDEEMAARVRALCDRRAGIGGDGILRVIRTAAYTGAD 66 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRD 113 + + F+ N DG+ + CGNG R + ++ + TF T G + D Sbjct: 67 RPASDAEWFMDYRNADGTLAEMCGNGTRVFAEYLRSAGLAGDEVTFATRAGDKTLRAEGD 126 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + +L + +A F + V MGNPHA VE Sbjct: 127 VWTADLGSPKLLGSTQVTVAHHF------------------WSACNVDMGNPHAAAEVES 168 Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 H + + ++ GVN+ + L +R +ERG G T +CG+ ACA Sbjct: 169 IDPHGPVGDLYDSPVFDETVYPHGVNVEFFVRVAERHLAMRVYERGAGETRSCGTGACAV 228 Query: 233 VVASGCLHKT----NRAVS--VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +VA+ + V+ V + GG L + W ++ V +TG A EG + Sbjct: 229 MVAAAEADGLAIARDADVTYRVDVPGGTLHVTWTTDDRVLLTGPAILVAEGTTSL 283 >gi|282891193|ref|ZP_06299696.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498886|gb|EFB41202.1| hypothetical protein pah_c048o019 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 266 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 115/279 (41%), Gaps = 26/279 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHD-NITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIR 65 F+K G GN ++ID R + + I L D ++L+ A D +R Sbjct: 5 FSKYSGCGNDFILIDNRDQRFPDRDASFIERLCLRRHGIGADGLILLELSHIA--DFRMR 62 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 I N DG E + CGNG+RC+V F GI S+ P Sbjct: 63 IFNADGYETEMCGNGIRCLV------------KFAQEIGIQKKHYTIQTMHSLLEAFPFG 110 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D I + + + + L V G PHA+ FV++ + Sbjct: 111 DSITISMTDPAEIEWDTQIEVD----QTLLTVHWVDTGVPHAVIFVDELEEARWMTLAPK 166 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 + A +GVN++ A+ E + LRT+ERGV T ACG+ A A+ +A+ + + Sbjct: 167 IRAHPHFSPKGVNVNFAQ-IKKEEISLRTYERGVEQETLACGTGATAAAIAAAKIQGISS 225 Query: 245 AVSVKMLGGG-LLIEWHDNN---HVFMTGEAKKEWEGKL 279 VS+K G L I++ +V +TG A ++G L Sbjct: 226 PVSIKTRSGDNLEIQFEKTTKFRNVRLTGPAICTFKGVL 264 >gi|313159544|gb|EFR58907.1| diaminopimelate epimerase [Alistipes sp. HGB5] Length = 268 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 64/287 (22%), Positives = 118/287 (41%), Gaps = 35/287 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAF 63 +V F K EG GN ++ID R + + I AL D +M + +D Sbjct: 2 LVSFVKYEGAGNDFILIDDREELFSADARLIAALCDRHFGIGADGLMTLRRS--VEMDCS 59 Query: 64 IRIINCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 +R N DGS + CGNG RC + ++ F+ G+ A+ R + + ++ Sbjct: 60 MRYYNADGSPGEMCGNGARCFALFAEHLGIGGETKYFDATDGMHTARICRAKNRTGEIEL 119 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 +++ I + + ++ G PH + F E +L D+ Sbjct: 120 GMINVSEI---------------------RSGKGWWFLNTGVPHYVEFTE-ELDGVDVKG 157 Query: 183 FGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVAS-GCL 239 G ++ F +G N++ A + + +RT+ERGV T ACG+ A A+ + + L Sbjct: 158 LGRMIRHDTARFPQGTNVNFAEIAGEGEIRMRTYERGVENETLACGTGATAAAIITNYAL 217 Query: 240 HKTNRAVSVKMLGGGLLIEWHDN------NHVFMTGEAKKEWEGKLD 280 + + GG L + + + +TG A++ ++G + Sbjct: 218 QHETTKYRITVPGGELHVRFSHEPGTQTYTDIRLTGPARRVFKGVFE 264 >gi|224498531|ref|ZP_03666880.1| diaminopimelate epimerase [Listeria monocytogenes Finland 1988] Length = 329 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 124/313 (39%), Gaps = 20/313 (6%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L + D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENQIMDWSDAKRADFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALIDAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL 175 + + + + ++ + L F VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAV 181 Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKT 283 + L ++V GG + + + + + G A +G + DI T Sbjct: 242 LIKKMLDNDTFETPLNVYNDGGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYENDIVT 301 Query: 284 GKWIKKNEDDEAY 296 + + Y Sbjct: 302 ELTNEATAEQAQY 314 >gi|300784292|ref|YP_003764583.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32] gi|299793806|gb|ADJ44181.1| diaminopimelate epimerase [Amycolatopsis mediterranei U32] Length = 275 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 67/283 (23%), Positives = 113/283 (39%), Gaps = 28/283 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----HDFQDASV 60 ++F K G N +++ +T + AL D ++ + + ++ Sbjct: 4 IEFLKGHGTQNDFVLLPDPAGRLELTEARVAALCDRRRGLGADGVLRVVRAAELGEPSAG 63 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + F+ N DGS + CGNG+R R+ T F T G + D S++V Sbjct: 64 EWFMDYRNADGSIAEMCGNGVRVFARYLVETGLAAEGEFVVGTRAGDRPVVVHPDRSVTV 123 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 MG + + + + V +GNPH + ++DD+ Sbjct: 124 HMGPATITGTSVTVVAGRPF-----------------SGVAVDVGNPHLVSLLDDDVAGL 166 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 DL + H +F GVNL +L +R ERGVG T ACG+ A+V A+ Sbjct: 167 DLREQPDFD--HDLFPHGVNLEFINCLGEGALRMRVHERGVGETRACGTGTVAAVAAAFH 224 Query: 239 LHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 L T+ +V + GG + + ++G A+ G+LD Sbjct: 225 LAGTDTGASTVDIPGGRVEVTVSRGAS-TLSGPAEIVARGELD 266 >gi|255524200|ref|ZP_05391160.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512185|gb|EET88465.1| Diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 225 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 15/232 (6%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL------VAK 109 + I+N DGS CGNG+RC +++ K + G + Sbjct: 3 NSDVAQIKMIIMNADGSYASMCGNGIRCFAKYVWDEDIVKGESITIETGDGVKEAILHLE 62 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + ++++MG P + + IP + + + + N + MG PH I Sbjct: 63 NHSIKEVTINMGTPSFEVEKIPA-----RFNEEVINKRIKVEKKEYNITSMLMGVPHTII 117 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 F + L Y++ G + K F +G N++ V S + ++TWERG G T ACG+ + Sbjct: 118 FGK--LEDYNVEE-GKAIEKSEFFPDGTNVNFCEVVSSNKVKVKTWERGAGPTLACGTGS 174 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CASV+A+ L T+ +V V++ GG L IE N +FMTG A ++G+ ++ Sbjct: 175 CASVIAANKLSLTDGSVEVQVPGGKLFIEIKKNG-IFMTGPAVVSFKGEYEL 225 >gi|256371460|ref|YP_003109284.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331] gi|256008044|gb|ACU53611.1| diaminopimelate epimerase [Acidimicrobium ferrooxidans DSM 10331] Length = 254 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 100/281 (35%), Gaps = 31/281 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + K+ G GN LV + + AL + D ++ + + Sbjct: 1 MRLTKLVGAGNDFLVTTDPDETARLEPSVVVALCDRRNGVGADGVIGLDAHD------AM 54 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + N DGS + GNG+RC+ +T FET G + + Sbjct: 55 VLYNADGSRAEMSGNGLRCLGHLVTEERGVGEVAFETDAGRRIYRRVGRE---------- 104 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 +GPV+ + V GNPH + + L Sbjct: 105 ------------GGSVLGATTMGPVSVRANERGWFVDAGNPHEVRQLASPQELASLDVAS 152 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 + +GVN+ A V + + + +R +ERGVG T ACG+ + A VA R Sbjct: 153 LGRCAQAHYPQGVNVEWAVVLAPDEVVMRVFERGVGETEACGTGSTAVAVALASAGLVER 212 Query: 245 A-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 V V+ GG L +E + V + G ++ +D++ Sbjct: 213 TSVRVRNPGGALTVEVTEPEPV-LVGPSRLVASVDVDVEAL 252 >gi|47096661|ref|ZP_00234248.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854] gi|254899284|ref|ZP_05259208.1| diaminopimelate epimerase [Listeria monocytogenes J0161] gi|254912577|ref|ZP_05262589.1| diaminopimelate epimerase [Listeria monocytogenes J2818] gi|254936903|ref|ZP_05268600.1| diaminopimelate epimerase [Listeria monocytogenes F6900] gi|47014983|gb|EAL05929.1| diaminopimelate epimerase [Listeria monocytogenes str. 1/2a F6854] gi|258609501|gb|EEW22109.1| diaminopimelate epimerase [Listeria monocytogenes F6900] gi|293590566|gb|EFF98900.1| diaminopimelate epimerase [Listeria monocytogenes J2818] Length = 329 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 67/317 (21%), Positives = 124/317 (39%), Gaps = 28/317 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NITSDA----INALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + L + D I+ + Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEENLITEWSDEQRTDFAIKLCDRKHSLGGADGILYVTKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATSLGF 121 Query: 117 SVDMGEPILDW-----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + + + + +P+ +K+ F VS+ NPH I FV Sbjct: 122 DIPTYQVEISPVKFASETLPMHVGVEKLFNQVIPELDAELAF----SAVSVPNPHLITFV 177 Query: 172 EDDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + + +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A Sbjct: 178 DQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAM 237 Query: 230 CASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MTGEAKKEWEGKL---- 279 A + L ++V GG + + + + + G A +G + Sbjct: 238 SACSLIKKMLDHDTFETPLNVYNDGGRVQVTAKKDIAGEISLQLIGNATFVSKGSVRYEN 297 Query: 280 DIKTGKWIKKNEDDEAY 296 D+ T + + Y Sbjct: 298 DVVTELTNEATAEQAQY 314 >gi|331695957|ref|YP_004332196.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190] gi|326950646|gb|AEA24343.1| Diaminopimelate epimerase [Pseudonocardia dioxanivorans CB1190] Length = 291 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 102/292 (34%), Gaps = 21/292 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLI------- 52 M S + FAK G N +V+ +++ + A D ++ + Sbjct: 1 MSSG-IRFAKGHGTENDFVVLPDPEGALDLSPARVAAVCDRRRGLGADGVLRVVRWAAAG 59 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 V+ F+ N DGS + CGNG+R R+L G +A Sbjct: 60 PDVPAPVPGVEWFMDYRNGDGSVAEMCGNGVRVFARYLALEA-----LLPDGPGAELALG 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 R G +V + + ++ + V +GNPH Sbjct: 115 TRGGVRTVRFAGGDGADGEVSVGMGVARVGDES---TATVRGHAYAGVAVDVGNPHLACV 171 Query: 171 VEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 D G P +F GVN+ S + + +R ERGVG T +CG+ Sbjct: 172 TAADAGALAALDLGVPPGHDPALFPHGVNVEFVTPVSGDEVTMRVHERGVGETRSCGTGT 231 Query: 230 CASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+VVA+ +R V V GG L + + + G A G++D Sbjct: 232 VAAVVAALRAAGRDRGTVGVTTPGGRLRVTVEPDGSTVLQGPAVVLAHGEID 283 >gi|309811271|ref|ZP_07705060.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185] gi|308434753|gb|EFP58596.1| diaminopimelate epimerase [Dermacoccus sp. Ellin185] Length = 290 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 99/289 (34%), Gaps = 16/289 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD------- 57 + F K G N +++ ++T + + L D ++ + + Sbjct: 4 IHFTKGHGTQNDFVLVPDESGELDLTPEQVAYLCHRHAGIGADGVIRVVRTANVPEVAHL 63 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG R +L SR A ++ Sbjct: 64 APQATWFMDYRNADGSLAEMCGNGTRVFAEYLRSRGLVSGDEGAPFVIATRAGLKEMVAV 123 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + W+L A ++ D + +GNPH + + ++ Sbjct: 124 PRGWAVDLGQWRL-ARAEEAERRGMDSVVQ-VHGSPDPLPALSLDLGNPHTVVALPPSVH 181 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L + P +G N+ + +R ERG G T +CG+ A A+ +A+ Sbjct: 182 LSALD-LSDAPHIDPHPEQGSNVEFVHAIEHAHIGMRVHERGSGETRSCGTGAAAAALAT 240 Query: 237 GCLHKTNR---AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V +LGG L + V ++G A +G++D+ Sbjct: 241 WWWGGQPADQVDWRVDVLGGTLGVHIKGT-EVALSGPAVLVADGEIDLS 288 >gi|317506467|ref|ZP_07964268.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] gi|316255228|gb|EFV14497.1| diaminopimelate epimerase [Segniliparus rugosus ATCC BAA-974] Length = 306 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 96/300 (32%), Gaps = 27/300 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFD--------------QIM 50 V F K G N +++ ++++ + + D + Sbjct: 13 VPFGKGHGTQNDFVLLADPDAKLRLSAERVARICDRRAGIGGDGLLRAARAGALLAEGEI 72 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 D F+ N DG VQ CGNG R FL + E ++ Sbjct: 73 AALPEGVGEEDWFMDYRNADGGAVQMCGNGARVFAHFLRANG------LEERDEHVIGTR 126 Query: 111 NRDGSISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + + + + + R+ + + F V +GNPH + Sbjct: 127 AGAKRVRLLAFDRGSAEVEVEMGRARVGGRSAASLPAEGTEGRRVFDGFAVDVGNPHLVC 186 Query: 170 -FVEDDLYHYDLASFGNLLAK-HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 L +F EGVN+ S E LR ERGVG T ACG+ Sbjct: 187 LAPALGLDGLAGLDLARQPEYDRDVFPEGVNIEFVVPHSPEKATLRVHERGVGETKACGT 246 Query: 228 AACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 + A L V+V GG + + + ++G + G+ D+ G+W Sbjct: 247 GSVAVAAVVLAELGSGAGEVAVSSPGGQVAVRVASDGSSVLSGPSALVARGEFDL--GQW 304 >gi|219683324|ref|YP_002469707.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis AD011] gi|219620974|gb|ACL29131.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis AD011] Length = 300 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 33/301 (10%) Query: 1 MQSSMVDFAKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF---- 55 + M+ K +G GN + D G H D I D ++ I Sbjct: 3 LPEHMI---KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVA 59 Query: 56 ----------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI 105 + V+ F+ N DG+ + CGNG R +FL + + E Sbjct: 60 DLDGHDAQKMRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLE---LEEGDAF 116 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + I+ P L +L + S+ D + + V MGN Sbjct: 117 KLGTRAGVKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDMGN 176 Query: 165 PHAIFFVEDDLYHYDLA---SFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTW 215 PH + VED + P G N+ AR L +R + Sbjct: 177 PHVVTVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRVY 236 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 ERG G T ACG+ CA+ + + + +++ GG + ++ D+ V +TG A Sbjct: 237 ERGCGETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALTA 294 Query: 276 E 276 E Sbjct: 295 E 295 >gi|315038092|ref|YP_004031660.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112] gi|312276225|gb|ADQ58865.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1112] Length = 334 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + D Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEND---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171 P ++ P+ A F + DR V L+ +++ NPH I FV Sbjct: 117 FAKDVPAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H T+ + V GG + + H +N+ + +TG A + ++ I Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294 Query: 283 TGKWIKKNEDD 293 + N ++ Sbjct: 295 ENDLHRNNLEN 305 >gi|227877369|ref|ZP_03995440.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01] gi|256842927|ref|ZP_05548415.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN] gi|256848698|ref|ZP_05554132.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US] gi|262045894|ref|ZP_06018858.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US] gi|293381823|ref|ZP_06627795.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1] gi|295692734|ref|YP_003601344.1| diaminopimelate epimerase [Lactobacillus crispatus ST1] gi|312978253|ref|ZP_07789996.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05] gi|227863037|gb|EEJ70485.1| diaminopimelate epimerase [Lactobacillus crispatus JV-V01] gi|256614347|gb|EEU19548.1| diaminopimelate epimerase [Lactobacillus crispatus 125-2-CHN] gi|256714237|gb|EEU29224.1| diaminopimelate epimerase [Lactobacillus crispatus MV-1A-US] gi|260573853|gb|EEX30409.1| diaminopimelate epimerase [Lactobacillus crispatus MV-3A-US] gi|290921609|gb|EFD98639.1| diaminopimelate epimerase [Lactobacillus crispatus 214-1] gi|295030840|emb|CBL50319.1| Diaminopimelate epimerase [Lactobacillus crispatus ST1] gi|310894772|gb|EFQ43843.1| diaminopimelate epimerase [Lactobacillus crispatus CTV-05] Length = 334 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 138/321 (42%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 M++ K+ G N ++D ++ + + D +++++ Sbjct: 1 MINLFKVHGSQNHFFILDQTQFEHELSDAELKNFTQKITNPQTGLLHGADGVLVVNHPVH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 ++ +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L + +D Sbjct: 61 SNSLGQMRVINADGSEASMCGNGLRTVARYLSEKTGKDNFLVDTMNASLRVRREKD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFH--IGPVNHLFLRNPFVVSMGNPHAIFF 170 P ++ P+ A FD + ++R P + LR + F Sbjct: 117 FASNVPAFAVEISPVRFNKEALPFDNLGQERIIDAWLPEIYPGLRFTSIAVPNPHLISFV 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + ++ L G + +P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQAEITGPILGIVGKKLNSNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCL----HKTNRAVSVKMLGGGLL--IEWHDNNH-VFMTGEAKKEWEGKL--- 279 A+ +A N +SV GG + + + N++ + + G A KL Sbjct: 237 SATSLALTLTHPEIGNLNTPISVYNPGGMVKTIVHYEKNSYWIELIGNATFTHRIKLSEA 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ G + I+K + AY Sbjct: 297 DLRKGDFSNVQIQKTAEQSAY 317 >gi|227552371|ref|ZP_03982420.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330] gi|257886457|ref|ZP_05666110.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733] gi|257895055|ref|ZP_05674708.1| diaminopimelate epimerase [Enterococcus faecium Com12] gi|293377960|ref|ZP_06624141.1| diaminopimelate epimerase [Enterococcus faecium PC4.1] gi|227178492|gb|EEI59464.1| possible diaminopimelate epimerase [Enterococcus faecium TX1330] gi|257822511|gb|EEV49443.1| diaminopimelate epimerase [Enterococcus faecium 1,141,733] gi|257831620|gb|EEV58041.1| diaminopimelate epimerase [Enterococcus faecium Com12] gi|292643507|gb|EFF61636.1| diaminopimelate epimerase [Enterococcus faecium PC4.1] Length = 266 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISV--DM 120 N DGS CGNG+RC R++ + + F ET+ G DM Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDM 112 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + I A+S+ +++ G + +G H + FVE+ Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVENSREEVW- 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 K + V V + G L+I + + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|169630126|ref|YP_001703775.1| diaminopimelate epimerase [Mycobacterium abscessus ATCC 19977] gi|229813233|sp|B1MD00|DAPF_MYCA9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169242093|emb|CAM63121.1| Probable diaminopimelate epimerase (DapF epimerase) [Mycobacterium abscessus] Length = 295 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 111/306 (36%), Gaps = 42/306 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 + F K G N +V+ +++ A+ AL D ++ + Sbjct: 1 MKFTKGHGTQNDFVVLPDVHIKRDLSVAAVQALCDRQRGLGADGVLRVTTVGAALEGGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 +S D F+ N DGS + CGNG+R +L S R F ++ G Sbjct: 61 AEKPAGVSSEDWFMDYRNADGSIAEMCGNGVRVFAHYLRSVGLEHRDEFVVASLAGPRPV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP-VNHLFLRNPFVVSMGNPH- 166 + N W + + D F G + + + +GNPH Sbjct: 121 RINS--------------WSQLTADVTVDMGPVKEFGAGEAIVGGRRFSGLAIDVGNPHL 166 Query: 167 -AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS---LESLDLRTWERGVGLT 222 + V L + +F +GVN+ + S ++ +R ERGVG T Sbjct: 167 ACVDAVLTTEQLRILDVGAPVTFDEQLFPDGVNVEVLTAPSAGPANTVHMRVHERGVGET 226 Query: 223 AACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ A+ A+ + + V V + GG + + + F+ G + +G++ Sbjct: 227 RSCGTGTVAAAYAALRHIGQRTGEVVVNIPGGQVRVTVTGESS-FLRGPSMLLADGEI-- 283 Query: 282 KTGKWI 287 + +W Sbjct: 284 -SDEWW 288 >gi|256375576|ref|YP_003099236.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827] gi|255919879|gb|ACU35390.1| diaminopimelate epimerase [Actinosynnema mirum DSM 43827] Length = 272 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 69/294 (23%), Positives = 104/294 (35%), Gaps = 35/294 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFI 64 V+F K G N +V+ ++T + AL D ++ + F+ Sbjct: 3 VEFLKGHGTENDFVVLPDVDNELDLTEGRVRALCDRQRGLGADGVLRVVRLDLGP--WFM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG+R R+L S FE T G + DGS++V MG Sbjct: 61 DYRNADGSIAEMCGNGVRVFARYLVSAGLAPEGEFEIATRAGKRAVTAHPDGSVTVGMGP 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 L + + + V +GNPH D+ L Sbjct: 121 VRLTGESTAVLGGVEFA-----------------GVGVDVGNPHLACV--TDVPVAGLDL 161 Query: 183 FGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVGLTAACGSAACASVVAS 236 +F GVN+ V L +R ERGVG T +CG+ A+V + Sbjct: 162 RDAPSHDAALFPAGVNVEFVNVLADGGMNGAGELRMRVHERGVGETRSCGTGTVAAVASW 221 Query: 237 GC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + A V + GG + + + +TG A G+LD W Sbjct: 222 LRGTGRATGAADVLVPGGRVRVTVDEGGS-TLTGPAVLLARGELD---RSWWDA 271 >gi|227504872|ref|ZP_03934921.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] gi|227198563|gb|EEI78611.1| diaminopimelate epimerase [Corynebacterium striatum ATCC 6940] Length = 276 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 101/287 (35%), Gaps = 28/287 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI-------HDFQD 57 + FAK G N ++I+ ++S+ + L D ++ + + Sbjct: 1 MKFAKGHGTENDFVIIEDHEGTLELSSERVRVLCDRRAGIGGDGLLRVVRAGALGEPVAE 60 Query: 58 --ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRD 113 A D F+ N DGS + CGNG R ++ SR +SF T G + Sbjct: 61 GIAPADWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLVDSESFVVGTRAGAKQVTVHSF 120 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVE 172 + + + + + V MGNPH A Sbjct: 121 DE-HDAQVSVEMGPAEVTGVSTASMVGEN------------FAGLGVDMGNPHLAAVIPG 167 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-A 231 +F H F GVN+ + ++ +R +ERGVG T +CG+ A Sbjct: 168 LTPESLADMAFAQPEFDHEFFPHGVNVEVLTQLVDGAVSMRVFERGVGETRSCGTGTVAA 227 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 + A + V V + GG + +E D +TG ++ EG Sbjct: 228 ARAALADAGEGAGTVIVNVPGGQVQVEIFDGGS-RLTGPSRIVAEGT 273 >gi|170781617|ref|YP_001709949.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. sepedonicus] gi|189082830|sp|B0RHB0|DAPF_CLAMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|169156185|emb|CAQ01327.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. sepedonicus] Length = 292 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 100/300 (33%), Gaps = 34/300 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF--------- 55 + F K +G GN ++ ++T + AL D + Sbjct: 4 LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSSRIPEGRAA 63 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 +D + F+ N DGS + CGNG+R FL E G V R Sbjct: 64 LDEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENG-----LIELPPGRTVPIGTRA 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G V + + + + R + +GNPH + + Sbjct: 119 GVRDVQRSGSGFQ-----VDLGRWALAGGEPLVRAKDLQVARPGLGIDVGNPHVVVALSS 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGS 227 + A P +EG N+ + + +R ERG G T +CG+ Sbjct: 174 E-DELAEADLAFAPQLDPEPAEGANVELVVPADPLIVDGVGHITMRVHERGSGETLSCGT 232 Query: 228 AACASVVASGCLHKTNRA--VSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 A A+ +A V++ GG L + D HV ++G A+ ++G + + Sbjct: 233 GAAAAALAIRHWAGAAAPHQWRVQLPGGVLGVRMFPTEDGEHVGLSGPAELVFDGVVALA 292 >gi|327183370|gb|AEA31817.1| diaminopimelate epimerase [Lactobacillus amylovorus GRL 1118] Length = 334 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQTGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + D Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEND---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171 P ++ P+ A F + DR V L+ +++ NPH I FV Sbjct: 117 FAKDVPAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H T+ + V GG + + H +N+ + +TG A + ++ I Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIY 294 Query: 283 TGKWIKKNEDD 293 + N ++ Sbjct: 295 ENDLHRNNLEN 305 >gi|148273202|ref|YP_001222763.1| diaminopimelate epimerase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166224255|sp|A5CSL3|DAPF_CLAM3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|147831132|emb|CAN02084.1| dapF [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 292 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 34/300 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF--------- 55 + F K +G GN ++ ++T + AL D + Sbjct: 4 LQFTKGQGTGNDFVLFADPAGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAA 63 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 +D + F+ N DGS + CGNG+R FL E G + R Sbjct: 64 LEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFLIENG-----LIELPPGRTIPIGTRA 118 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 G V + ++ + + R + +GNPH + + Sbjct: 119 GVRDVQRSGSGFQ-----VDLGRWELAGGEPLVRAKDLQVARPGLGIDVGNPHVVVALSS 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAACGS 227 + A + P + G N+ + + +R ERG G T +CG+ Sbjct: 174 E-DELAEADLAFVPQLDPEPAAGANVELVVPADPLVVDGVGHITMRVHERGSGETLSCGT 232 Query: 228 AACASVVASGCLHKTNRA--VSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLDIK 282 A A+ +A+ V++ GG L + D HV ++G A+ ++G + + Sbjct: 233 GAAAAALATRHWAGAAAPHQWRVQLPGGALGVRMFPTEDGEHVGLSGPAELVFDGVVALA 292 >gi|257892664|ref|ZP_05672317.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408] gi|257829043|gb|EEV55650.1| diaminopimelate epimerase [Enterococcus faecium 1,231,408] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDGSISV--DM 120 N DGS CGNG+RC R++ + + F ET+ G DM Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFDVETLAGTRKITVLAPSPFYCSVDM 112 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + I A+S+ +++ G + +G H + FVE + Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVE-NAREEVW 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 K + V V + G L+I + + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|257897663|ref|ZP_05677316.1| diaminopimelate epimerase [Enterococcus faecium Com15] gi|257835575|gb|EEV60649.1| diaminopimelate epimerase [Enterococcus faecium Com15] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYTEDTDY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV--DM 120 N DGS CGNG+RC R++ + + F ET+ G DM Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDM 112 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + I A+S+ +++ G + +G H + FVE + Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVE-NAREEIW 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 K + V V + G L+I + + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|227535765|ref|ZP_03965814.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244253|gb|EEI94268.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 109/284 (38%), Gaps = 39/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R +++A D +ML+ + D Sbjct: 5 IKFYKYQGAGNDFILIDNRKAVFERSNEAFVKQLCDRRFGVGADGLMLLQ--DTKNFDFE 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC+V F + + F + G A+ + +++ M + Sbjct: 63 MVYYNADGREGSMCGNGGRCIVAFARDLNIIGEDAAFLAVDGPHQAQIHD-NQVNLQMID 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 K + +V++ G+PH I V D Sbjct: 122 VDQISKD-------------------------ESAYVLNTGSPHFIKIVSDLKNMDVYQE 156 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + EG+N++ +RT+ERGV T ACG+ A A+ +A Sbjct: 157 GYTIRNNATYKKEGINVNFVEKE-ENGYFVRTFERGVEDETFACGTGATAAAMAIAIEEN 215 Query: 242 TNRAVS--VKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKL 279 + +++LGG L I + N H V++ G A +EG + Sbjct: 216 MEGQIEIPIRVLGGQLYISFLKNGHTFREVYLKGPANYVFEGNI 259 >gi|153003485|ref|YP_001377810.1| diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5] gi|152027058|gb|ABS24826.1| Diaminopimelate epimerase [Anaeromyxobacter sp. Fw109-5] Length = 266 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 104/284 (36%), Gaps = 22/284 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M + F K G+GN +V+D + + D ++ + + + Sbjct: 2 MHGVPLSFVKYHGLGNDFIVVDGPLMDPDRARRLCDR---RRGIGADGVLTVLPPRTSGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + I N DGS CGNG+RCV R L G LV + V Sbjct: 59 AATMHIFNSDGSVAAMCGNGVRCVARHLAETRGL--------SGALVIDTDSGPKRCVVH 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + + D VSMGNPHA+ F Sbjct: 111 RTPAGVPSAVSVEMGPAAVQGDEELRAGGE---TVRAVRVSMGNPHAVLFDTPTRERASA 167 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 GVN+ AR +DL WERG GLT ACG+ ACA+ VAS Sbjct: 168 IGPLLER----AVPGGVNVGFARP-GPHGIDLVVWERGAGLTDACGTGACAAAVASVRAG 222 Query: 241 --KTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 K V V++ GG L I + V M G A + + G+ D+ Sbjct: 223 AVKAETPVEVRLPGGALEITVGADLVRVTMRGPAARVFAGETDL 266 >gi|86152715|ref|ZP_01070920.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612449|ref|YP_001001171.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006064|ref|ZP_02271822.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] gi|166224254|sp|A1W1D0|DAPF_CAMJJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85843600|gb|EAQ60810.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249735|gb|EAQ72694.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81-176] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T G++ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFAYKNEELFFEGKVKYCFEANYN 247 >gi|255325167|ref|ZP_05366273.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311739639|ref|ZP_07713474.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297732|gb|EET77043.1| diaminopimelate epimerase [Corynebacterium tuberculostearicum SK141] gi|311305455|gb|EFQ81523.1| diaminopimelate epimerase [Corynebacterium pseudogenitalium ATCC 33035] Length = 286 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 97/299 (32%), Gaps = 36/299 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + FAK G N ++++ + + + AL D ++ + + Sbjct: 1 MKFAKGHGTENDFVIVEDHAAATPLAPERVAALCDRRAGIGGDGLLRVVRAEALLAAGEI 60 Query: 57 ------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 A D F+ N DGS + CGNG R +L SR + FT T G Sbjct: 61 EALAEGIAPTDWFMDYRNADGSVAEMCGNGTRVFAHWLRSRGLVEEDEFTIGTRAGAKRV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + D + + + + V A Sbjct: 121 TVH------------SCDEQAAEVTVEMGPAEVTGVSTASMAGESYAGLGVDMGNPHLAA 168 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D +F + F GVN+ + + +R +ERGVG T +CG+ Sbjct: 169 VVPGLDAEGLAAKTFEQPVIDEAFFPAGVNVEVVTPLRDGHVHMRVFERGVGETRSCGTG 228 Query: 229 ACASVVASGCLHKTNR------AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A+ + V V + GG + ++ ++ +TG + G+ + Sbjct: 229 TVAAATAALADAAVDHTTTPHGTVHVHVPGGEVTVDIYEGGS-RLTGPSAIVATGETSL 286 >gi|157415749|ref|YP_001483005.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81116] gi|172047186|sp|A8FNJ1|DAPF_CAMJ8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|157386713|gb|ABV53028.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 81116] gi|307748391|gb|ADN91661.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni M1] gi|315931036|gb|EFV10011.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 327] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F+ K + +F T G++ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFAYKNEELFFEGKVKYCFEANYN 247 >gi|54025799|ref|YP_120041.1| diaminopimelate epimerase [Nocardia farcinica IFM 10152] gi|54017307|dbj|BAD58677.1| putative diaminopimelate epimerase [Nocardia farcinica IFM 10152] Length = 302 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 103/307 (33%), Gaps = 38/307 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 ++F K G N +V+ ++T + AL D ++ + Sbjct: 9 IEFTKGHGTENDFVVLPDEDVRLDLTPARVAALCDRQRGLGADGVLRVARAGALLRAGVL 68 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG+R + T R + + G Sbjct: 69 DALPAGVSDTDWFMDYRNADGSIAEMCGNGVRVFAHYLAATGRAEGTEHVVGSRAGARPV 128 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + G ++ + + + + L V + + Sbjct: 129 TVHAAGPTHGEVTVAM---------GEVRALGASTATVAGWGYSGL--GIDVGNPHLACV 177 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGVGLTAACGS 227 L + +F GVN+ I + +D+R +ERGVG T +CG+ Sbjct: 178 DPTLTAEALAKLDLTVSPGYDPDLFPHGVNVEILTPLDEQRAVDMRVYERGVGETRSCGT 237 Query: 228 AACASVVA-----SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 A+ A L + AV+V++ GG + + + ++ G + G+L Sbjct: 238 GTVAAAAAALSAEGFELATGSGAVTVRVPGGAVRVGL-EAGSAWLRGPSVLVATGRL--- 293 Query: 283 TGKWIKK 289 T W + Sbjct: 294 TADWWQT 300 >gi|289435361|ref|YP_003465233.1| hypothetical protein lse_2000 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171605|emb|CBH28151.1| dapF [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 332 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 26/316 (8%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDN--THFDQIMLIHDFQ 56 + + F K+ G N ++D + + +D L + D I+ + Sbjct: 2 ATIHFTKVHGSQNSFFLVDEEENNISSWSDAKRADFAIKLCDKTHAFGGADGILYVSKSS 61 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 +A ++++N DGS CGNG+R V R+L + ET++ IL K+ Sbjct: 62 EAETIGQMKVVNSDGSLASMCGNGLRTVARYLLEKHHLTEAKVETMKAILDVKKASSLGF 121 Query: 117 SVDMGEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + + L + + + VS+ NPH I FV+ + Sbjct: 122 DIPTYQVEISPVNFNLKSLPMNLPVEKLINQVVPELDAELAFSAVSVPNPHLIAFVDQAV 181 Query: 176 -YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + ++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A Sbjct: 182 LDSDKQEKLASYLNGENPFFPDGVNVSFVKRLSEDAIYVRTFERGVGFTNACGTAMSACS 241 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKE------WEG-KLD 280 + L + ++V GG + + ++ + + G A ++G +++ Sbjct: 242 LIKKMLDRDVLEIPLNVYNDGGRVQVTAKEDAEGELSLQLIGNATFVNVGTVSYDGDEVE 301 Query: 281 IKTGKWIKKNEDDEAY 296 T + + +Y Sbjct: 302 PLTNE---ATPEQASY 314 >gi|293571377|ref|ZP_06682407.1| diaminopimelate epimerase [Enterococcus faecium E980] gi|291608516|gb|EFF37808.1| diaminopimelate epimerase [Enterococcus faecium E980] Length = 266 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 113/277 (40%), Gaps = 21/277 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D + S +L + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYTEDTNY--SQLAASLCAKEKYDTDGLIAVKTDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS--FTFETIRGILVAKENRDGSISV--DM 120 N DGS CGNG+RC R++ + + F ET+ G DM Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNRMDEQEFNVETLAGTRKITVLDPSPFYCSVDM 112 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G P + I A+S+ +++ G + +G H + FVE + Sbjct: 113 GVPDDSPEKIKAAQSYPIKNQEIEIGG-----EKVTITSLFLGTIHTVVFVE-NAREEVW 166 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 G L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS + Sbjct: 167 KKRGELICHHPLFKEKTNVNFVEVVNEQELTVRTYERGVGWTLACGTGCCASYAVAKETG 226 Query: 241 KTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 K + V V + G L+I + + M G A EW Sbjct: 227 KISADQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|86149276|ref|ZP_01067507.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596665|ref|ZP_01099902.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563124|ref|YP_002344903.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22256740|sp|Q9PMD8|DAPF_CAMJE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|85840058|gb|EAQ57316.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191506|gb|EAQ95478.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360830|emb|CAL35631.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926730|gb|ADC29082.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni IA3902] Length = 249 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 101/278 (36%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFAYKNEELFFEGKVKYCFEANYN 247 >gi|269219568|ref|ZP_06163422.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str. F0332] gi|269210810|gb|EEZ77150.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 848 str. F0332] Length = 331 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 101/317 (31%), Gaps = 58/317 (18%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAIN-ALSTDDNTHFDQIMLIHDFQD---------- 57 K G GN +++ ++ ++A+ D ++ + Sbjct: 12 TKAHGTGNDFILVPDFAGTLDLPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVARD 71 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + F+ N DGS Q CGNG+R V +L + + R + VA ++ Sbjct: 72 FPEAEWFMDYRNADGSIAQMCGNGLRVFVHYLRIQGVID---LKPGRSVTVATRGGVKAV 128 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 S D +D + D V + R V+M NPH + ++ Sbjct: 129 SFDGAVYTIDMGE----YGLPRGDAGDDTRVAVPGVGERPALSVTMPNPHTVVLLD-SAE 183 Query: 177 HYDLASFGNLLAKHPMFSEGVNLS--IARVTSL--------------------------- 207 A P+ EG NL +A Sbjct: 184 ELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRADQGLA 243 Query: 208 -------ESLDLRTWERGVGLTAACGSAACASVVA-SGCLHKTNRAVSVKMLGGGLLIEW 259 +R ERGVG T ACG+ CA+ +A + V ++ GG L + Sbjct: 244 DRSVSPSNPALMRVLERGVGETLACGTGTCAAALAVLLSRGEREGEVRLRSPGGPLTVRI 303 Query: 260 HDNNHVFMTGEAKKEWE 276 + F+TG A E Sbjct: 304 -EGGRAFLTGPAVLVAE 319 >gi|69244869|ref|ZP_00603093.1| Diaminopimelate epimerase [Enterococcus faecium DO] gi|257879078|ref|ZP_05658731.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933] gi|257882114|ref|ZP_05661767.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502] gi|257889909|ref|ZP_05669562.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410] gi|258615458|ref|ZP_05713228.1| diaminopimelate epimerase [Enterococcus faecium DO] gi|260562742|ref|ZP_05833237.1| diaminopimelate epimerase [Enterococcus faecium C68] gi|293563573|ref|ZP_06678021.1| diaminopimelate epimerase [Enterococcus faecium E1162] gi|294622606|ref|ZP_06701603.1| diaminopimelate epimerase [Enterococcus faecium U0317] gi|314947847|ref|ZP_07851254.1| diaminopimelate epimerase [Enterococcus faecium TX0082] gi|68196223|gb|EAN10653.1| Diaminopimelate epimerase [Enterococcus faecium DO] gi|257813306|gb|EEV42064.1| diaminopimelate epimerase [Enterococcus faecium 1,230,933] gi|257817772|gb|EEV45100.1| diaminopimelate epimerase [Enterococcus faecium 1,231,502] gi|257826269|gb|EEV52895.1| diaminopimelate epimerase [Enterococcus faecium 1,231,410] gi|260072901|gb|EEW61261.1| diaminopimelate epimerase [Enterococcus faecium C68] gi|291597911|gb|EFF29036.1| diaminopimelate epimerase [Enterococcus faecium U0317] gi|291604575|gb|EFF34061.1| diaminopimelate epimerase [Enterococcus faecium E1162] gi|313645827|gb|EFS10407.1| diaminopimelate epimerase [Enterococcus faecium TX0082] Length = 266 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L T + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDIDGLIAVKIDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG+RC R++ + F K + Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 P ++ + +N + + +F + G Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGEKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 231 DQVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261 >gi|183602361|ref|ZP_02963727.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis HN019] gi|241191285|ref|YP_002968679.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196691|ref|YP_002970246.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218280|gb|EDT88925.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis HN019] gi|240249677|gb|ACS46617.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251245|gb|ACS48184.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794278|gb|ADG33813.1| diaminopimelate epimerase [Bifidobacterium animalis subsp. lactis V9] Length = 294 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 103/297 (34%), Gaps = 33/297 (11%) Query: 5 MVDFAKMEGIGNKIL-VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF-------- 55 M+ K +G GN + D G H D I D ++ I Sbjct: 1 MI---KAQGTGNDFVMYADRSGEHAPQKQDIIQLCDRHFGIGADGLIRITRPGHVADLDG 57 Query: 56 ------QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + V+ F+ N DG+ + CGNG R +FL + + E + Sbjct: 58 HDAQKMRKEGVEWFMDYRNADGTLAEMCGNGTRATAQFLVQQGMLE---LEEGDAFKLGT 114 Query: 110 ENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 I+ P L +L + S+ D + + V MGNPH + Sbjct: 115 RAGVKRITRMPDNPELGRQLWRVDMGSWSMGAEDEYTVTIPGDTGSGKGTFVDMGNPHVV 174 Query: 169 FFVEDDLYHYDLA---SFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTWERGV 219 VED + P G N+ AR L +R +ERG Sbjct: 175 TVVEDAYSTLPVLGELDLTRAPQVSPELPNGQNVEFARIDNLDTERDLGDASMRVYERGC 234 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 G T ACG+ CA+ + + + +++ GG + ++ D+ V +TG A E Sbjct: 235 GETMACGTGLCATAIVLRAKTQID-HWRIRIPGGIVRVDVTDD-SVMLTGAAALTAE 289 >gi|325956545|ref|YP_004291957.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC] gi|325333110|gb|ADZ07018.1| diaminopimelate epimerase [Lactobacillus acidophilus 30SC] Length = 334 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 135/311 (43%), Gaps = 28/311 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-----NT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + + + D ++ I+ Sbjct: 1 MVKLLKVHGSQNHFFILDQTELDKPLTDEELRDFTKKITNAQIGILNGADGVLAINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L + D Sbjct: 61 KGALAQMRVINEDGSEASMCGNGLRTVARYLSEKYQQDHFLVDTMNASLRVHKEND---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAIFFV 171 P ++ P+ A F + DR V L+ +++ NPH I FV Sbjct: 117 FAKDVPAYSVEISPVRFNKEALPFTNLGHDRIIDNFVPELYPGLRFTSIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L +++P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQEQISGPILGIVGKRLNSENPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H T+ + V GG + + H +N+ + +TG A + ++ I Sbjct: 237 SATSLALWLTHPEMVDTDSQIDVFNPGGMVKTKVHYDNNEYWIELTGNAT--FTHQITIS 294 Query: 283 TGKWIKKNEDD 293 + N ++ Sbjct: 295 ENDLHRNNLEN 305 >gi|323466764|gb|ADX70451.1| Diaminopimelate epimerase [Lactobacillus helveticus H10] Length = 340 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L D +++++D Sbjct: 7 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTVKLTDPKTGLLGGADGVLVVNDPVR 66 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D Sbjct: 67 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 122 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170 P ++ P+ A FD + DR G P + LR + F Sbjct: 123 FASNVPAFAVEISPVHFNKEALPFDNLGHDRLIDGFAPELYQGLRFSSIAVPNPHLISFV 182 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 183 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 242 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279 A+ +A + + ++V GG + I ++NN+ + + G A + + Sbjct: 243 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENNNYWIELIGNATFTHQISIDEE 302 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ + I + + AY Sbjct: 303 DLRNSNFATAQITETNEQNAY 323 >gi|327440160|dbj|BAK16525.1| diaminopimelate epimerase [Solibacillus silvestris StLB046] Length = 320 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 18/290 (6%) Query: 6 VDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + K+ G GN + + N + A ++ D ++++ A DA + Sbjct: 3 IQLTKVHGSGNTFYLYEALYDEQFNFVNIAKQLCHHSNDGGADGLLIVLPSSVA--DAKM 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGS-----ISVD 119 R+IN DGSE CGNG+RCV R++ ++ ET+ L K SV+ Sbjct: 61 RVINADGSEASMCGNGLRCVARYVCEKLNVDEAVIETMHACLKVKREASIFEQLPTYSVE 120 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + +P+ + R + +S+ NPH I V+ Sbjct: 121 ISPISFELVSLPMKVENRQQLRHEIIPAFSMDI---PFTAISVPNPHLIGIVDHKYMENT 177 Query: 180 LASFG---NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 L L +++ +GVN+S + S + + +RT+ERGVG T ACG+A AS + + Sbjct: 178 LHQEQLAAYLNSENEYCPDGVNVSYVQPLSPDEIFVRTFERGVGFTNACGTAMTASALIA 237 Query: 237 GCLHK-TNRAVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIK 282 TN V+V GG + E + + + G A + + D++ Sbjct: 238 SIEGFITNSKVTVYNPGGFVQCEVKNCGDSWELALIGNATVLGDYEYDLQ 287 >gi|145636697|ref|ZP_01792364.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] gi|145270223|gb|EDK10159.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] Length = 171 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 88/177 (49%), Gaps = 7/177 (3%) Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 +V D I V+MGEPI + IP ++ + + VSMGNP Sbjct: 1 MVLTVKDDNQIRVNMGEPIWEPAKIPFTA-----NKFEKNYILRTDIQTVLCGAVSMGNP 55 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 H + V+ D+ ++ G+LL H F E VN ++ + E + LR +ERG G T AC Sbjct: 56 HCVVQVD-DIQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQAC 114 Query: 226 GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 GS ACA+V N V V + GG L+IEW+ H ++MTGEA ++G + + Sbjct: 115 GSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 171 >gi|271963764|ref|YP_003337960.1| diaminopimelate epimerase [Streptosporangium roseum DSM 43021] gi|270506939|gb|ACZ85217.1| Diaminopimelate epimerase [Streptosporangium roseum DSM 43021] Length = 268 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 60/288 (20%), Positives = 107/288 (37%), Gaps = 32/288 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + F K G N +++ + + + + D ++ + + Sbjct: 1 MRFVKGHGTENDFVILPDPDGELELPAALVARVCDRRAGIGADGVLRVMRTKLSPEVADQ 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG 114 + F+ N DG + CGNG+R R+ F T G+ + G Sbjct: 61 AGEAEWFMDYRNSDGGAAEMCGNGVRVFARYLVDAGLAGAGEFGVATRGGVRRVRLAETG 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P + R R + + LR V MGNPH + D Sbjct: 121 DVTVDMGTP-------------RLLGRSRTTVAGQEYEGLR----VDMGNPHLACAIGDP 163 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASV 233 + DL+ F GVN+ + + +R +ERG G T +CG+ ++V Sbjct: 164 VAQLDLSHQPAFD--PEAFPSGVNIELLNPVGPRRIVMRVFERGSGETRSCGTGAVASAV 221 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ +T +V++LGG + + + ++ G A G L + Sbjct: 222 AAAHLAGETTGTWAVEVLGGTVTVTLDERTS-YLAGPAVLVASGDLSL 268 >gi|293556548|ref|ZP_06675118.1| diaminopimelate epimerase [Enterococcus faecium E1039] gi|291601293|gb|EFF31575.1| diaminopimelate epimerase [Enterococcus faecium E1039] Length = 266 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L T + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG+RC R++ + F K + Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 P ++ + +N + + +F + G Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGDKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 231 DQVVVHLEQGDLMIS--GEDTIQMAGPAVHEWT 261 >gi|260101786|ref|ZP_05752023.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075] gi|260084430|gb|EEW68550.1| diaminopimelate epimerase [Lactobacillus helveticus DSM 20075] Length = 355 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L D +++++D Sbjct: 22 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 81 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D Sbjct: 82 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 137 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRF-------HIGPVNHLFLRNPFVVSMGNPHAIFF 170 P ++ P+ + + + D P + LR + F Sbjct: 138 FASNVPAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLISFV 197 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 198 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 257 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLD-- 280 A+ +A + + ++V GG + I ++N + + + G A + +D Sbjct: 258 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 317 Query: 281 -IKTGKW----IKKNEDDEAY 296 ++ + I + + AY Sbjct: 318 YLRNSNFATAQITETTEQNAY 338 >gi|256847132|ref|ZP_05552578.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN] gi|256715796|gb|EEU30771.1| diaminopimelate epimerase [Lactobacillus coleohominis 101-4-CHN] Length = 336 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 28/312 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G NK ++D +T + AL+ D ++++++ Sbjct: 1 MVQLLKVHGSQNKFFILDQTTLQQQLTDSELVALTKQITNPQTGILHGADGLLVVNNSNH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V A +R+IN DGSE CGNG+R V R++ + + SF ET + A Sbjct: 61 PGVTAQMRVINTDGSEASMCGNGIRTVARYVAEKTGQDSFKIET----MKADLKVAKHDE 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI-FF 170 G P ++ P+ FD + +R V L + +++ NPH I F Sbjct: 117 FADGVPAYAAEISPVLFDKHDLPFDHLGHERIIDDYVPELAPKLKFTSLAVPNPHLIAFM 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E + L G K+P +S+GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 DEQTITGPLLGKLGRRLNGKNPYYSDGVNVNFAKIIDHNQLFVRTFERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIK 282 A+ +A H ++ ++V GG + H+++ + + G A ++D+ Sbjct: 237 SATTLAFALTHPDMADFDQPITVYNPGGMVKTIVHNDDDQYWIELIGNATVTE--QIDVS 294 Query: 283 TGKWIKKNEDDE 294 + N D Sbjct: 295 EQVLHEANVTDS 306 >gi|171742433|ref|ZP_02918240.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC 27678] gi|171278047|gb|EDT45708.1| hypothetical protein BIFDEN_01544 [Bifidobacterium dentium ATCC 27678] Length = 299 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 100/299 (33%), Gaps = 34/299 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K GN +V T+D + L D ++ + QD Sbjct: 8 YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + F+ N DGS + CGNG R + F + E R A Sbjct: 68 DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVK-- 125 Query: 114 GSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 I +GE K + S+ + D D + + V MGNPH + + Sbjct: 126 --ILTSLGEVEGLGKDVFRVEMGSWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVAVI 183 Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222 ED L + P N+ +R ERG G T Sbjct: 184 EDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGET 243 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ CA+ + + ++ + GG L ++ D++ V +TG A GK+++ Sbjct: 244 LSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVEL 298 >gi|153951653|ref|YP_001398825.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei 269.97] gi|166224253|sp|A7H5P5|DAPF_CAMJD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|152939099|gb|ABS43840.1| diaminopimelate epimerase [Campylobacter jejuni subsp. doylei 269.97] Length = 249 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 97/277 (35%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ +S A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSSLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K F T G++ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPSMIFLTGAGVIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + G PH + F + L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFEKLG------KTWQLCDTGVPHLVHFCQS------LDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGEEMGFAYKNEELFFEGKVKYCFEANYN 247 >gi|283956902|ref|ZP_06374375.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336] gi|283791628|gb|EFC30424.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 1336] Length = 249 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 98/278 (35%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ + A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSVLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T G++ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQFCDTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|261208138|ref|ZP_05922813.1| diaminopimelate epimerase [Enterococcus faecium TC 6] gi|289566338|ref|ZP_06446767.1| diaminopimelate epimerase [Enterococcus faecium D344SRF] gi|293567983|ref|ZP_06679322.1| diaminopimelate epimerase [Enterococcus faecium E1071] gi|294614569|ref|ZP_06694474.1| diaminopimelate epimerase [Enterococcus faecium E1636] gi|294618663|ref|ZP_06698198.1| diaminopimelate epimerase [Enterococcus faecium E1679] gi|314939327|ref|ZP_07846573.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04] gi|314941269|ref|ZP_07848163.1| diaminopimelate epimerase [Enterococcus faecium TX0133C] gi|314950673|ref|ZP_07853751.1| diaminopimelate epimerase [Enterococcus faecium TX0133A] gi|314992038|ref|ZP_07857489.1| diaminopimelate epimerase [Enterococcus faecium TX0133B] gi|314998018|ref|ZP_07862911.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01] gi|260077722|gb|EEW65438.1| diaminopimelate epimerase [Enterococcus faecium TC 6] gi|289161847|gb|EFD09718.1| diaminopimelate epimerase [Enterococcus faecium D344SRF] gi|291589306|gb|EFF21115.1| diaminopimelate epimerase [Enterococcus faecium E1071] gi|291592550|gb|EFF24154.1| diaminopimelate epimerase [Enterococcus faecium E1636] gi|291595092|gb|EFF26434.1| diaminopimelate epimerase [Enterococcus faecium E1679] gi|313587977|gb|EFR66822.1| diaminopimelate epimerase [Enterococcus faecium TX0133a01] gi|313593359|gb|EFR72204.1| diaminopimelate epimerase [Enterococcus faecium TX0133B] gi|313597095|gb|EFR75940.1| diaminopimelate epimerase [Enterococcus faecium TX0133A] gi|313599870|gb|EFR78713.1| diaminopimelate epimerase [Enterococcus faecium TX0133C] gi|313641418|gb|EFS05998.1| diaminopimelate epimerase [Enterococcus faecium TX0133a04] Length = 266 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L T + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG+RC R++ + F K + Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 P ++ + +N + + +F + G Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGEKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 231 DQVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261 >gi|68536187|ref|YP_250892.1| diaminopimelate epimerase [Corynebacterium jeikeium K411] gi|260578884|ref|ZP_05846789.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734] gi|68263786|emb|CAI37274.1| dapF [Corynebacterium jeikeium K411] gi|258602974|gb|EEW16246.1| diaminopimelate epimerase [Corynebacterium jeikeium ATCC 43734] Length = 288 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 91/290 (31%), Gaps = 23/290 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI----------- 52 M++F K G N +V+ N+T D + L+ D ++ + Sbjct: 1 MIEFIKAHGTENDFVVLMDEATQVNLTEDRVRHLADRRAGIGGDGVIRVATGDALVGAGV 60 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R L + K + Sbjct: 61 LAGLPAGVHGDEWFMDYRNADGSLAEMCGNGVRAFAHVLCRQGK-----VTVGEQFGIGT 115 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + V I + + + A+ Sbjct: 116 RAGRKMVEVHELSGENQEHAIVSVEMGAPEVLGVSTAQVGDLKVAGLGVDMGNPHLAAVV 175 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWERGVGLTAACGSA 228 L L + F GVNL + ++ +R ERGVG T +CG+ Sbjct: 176 PNLTALELQKLPIDQQVQFDTEFFPAGVNLEVLTPLDNAGAVHMRVHERGVGETRSCGTG 235 Query: 229 ACASVVASGCLH-KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 A+ V++ V+V + GG + +E ++ V + G + G Sbjct: 236 TVAAAVSALADAELATGTVTVHVPGGTVQVEISEDGSV-LRGPSAIVAWG 284 >gi|161507352|ref|YP_001577306.1| diaminopimelate epimerase [Lactobacillus helveticus DPC 4571] gi|160348341|gb|ABX27015.1| Diaminopimelate epimerase [Lactobacillus helveticus DPC 4571] Length = 334 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L D +++++D Sbjct: 1 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D Sbjct: 61 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIG--PVNHLFLRNPFVVSMGNPHAIFF 170 P ++ P+ A FD + DR P + LR + F Sbjct: 117 FASNVPAFAVEISPVHFNKEALPFDNLGHDRLIDDFAPELYQGLRFSSIAVPNPHLISFV 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKL--- 279 A+ +A + + ++V GG + I ++N + + + G A + + Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++ + I + + AY Sbjct: 297 DLRNSNFATAQITETTEQNAY 317 >gi|227549099|ref|ZP_03979148.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM 44291] gi|227078828|gb|EEI16791.1| diaminopimelate epimerase [Corynebacterium lipophiloflavum DSM 44291] Length = 266 Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 20/278 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 ++F K G N +V+ ++ + AL D ++ + + F+ Sbjct: 3 IEFLKGHGTENDFVVVPDPADALTLSEAEVAALCDRRAGIGGDGLLRVVEHD---GRWFM 59 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNG+R L + + F +T G+ + + Sbjct: 60 DYRNVDGSIAEMCGNGVRVFAHVLVAEGLVTEREFDVDTRAGLKHIEVLQA--------- 110 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 D + +++ + V A D Sbjct: 111 ---DSTDATVKVGMGRVEVTGVSTARMGDFDFAGLGVDVGNPHLAAVIPGLTAAELDAMQ 167 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 F H F EGVN+ + + + +R WERGVG T +CG+ A+ A+ Sbjct: 168 FAQPAFDHSFFPEGVNVEVLTELNDGHVHMRVWERGVGETHSCGTGTVAAARAALADAGV 227 Query: 243 NR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 V+V + GG + +E + MTG +K G + Sbjct: 228 ENGTVTVNVPGGAIEVELS-DGEALMTGPSKIVARGTV 264 >gi|225351502|ref|ZP_03742525.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157846|gb|EEG71129.1| hypothetical protein BIFPSEUDO_03098 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 299 Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 99/299 (33%), Gaps = 34/299 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K GN +V T+D + L D ++ + Q Sbjct: 8 YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + D F+ N DGS + CGNG R + F + E R A Sbjct: 68 VCAADNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVK-- 125 Query: 114 GSISVDMGEPILDWKLIPLARSFDKM--DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + +G+ K + D D + + V MGNPH + + Sbjct: 126 --VLTSLGDVPTLGKDVFQVEMGSWKRGDLDGYEVTIPGTAGSARGTFVDMGNPHVVAVI 183 Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222 ED L + P N+ + + +R ERG G T Sbjct: 184 EDAFSSLPTVEQLDLVTKPVVAPRIESDQNVEFVRIDEQSEGDNEGNATMRVNERGCGET 243 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ CA+ + + ++ + GG L ++ DN+ V +TG A GK+++ Sbjct: 244 LSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDND-VKLTGSATIV--GKIEL 298 >gi|227833311|ref|YP_002835018.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] gi|262184295|ref|ZP_06043716.1| diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] gi|254767098|sp|C3PGX6|DAPF_CORA7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|227454327|gb|ACP33080.1| Diaminopimelate epimerase [Corynebacterium aurimucosum ATCC 700975] Length = 278 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 95/292 (32%), Gaps = 30/292 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N ++++ G + + + AL D ++ I Sbjct: 1 MKFAKGHGTENDFVIVEGTG---PLPPEKVVALCDRRAGIGADGVLRIIRAGELLASGEI 57 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + D F+ N DGS + CGNG R ++ SR + TF + Sbjct: 58 DELAPGINADDWFMDYRNADGSVAEMCGNGTRVFAHWVRSRGLLEEDTFTVGTRAGAKQV 117 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + L S M + F V+ V+ Sbjct: 118 TVHSFSETEAEVSVEMGPAQVLGVSTASMAGESFAGLGVDMGNPHLAAVIPGLTA----- 172 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + F GVN+ + + +R +ERG G T +CG+ Sbjct: 173 -----EDLAAKRLEQPVFDADFFPAGVNVELVTPLCDGVIHMRVFERGSGETRSCGTGTV 227 Query: 231 -ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A+ A + V V + GG + +E ++ +TG ++ G+ + Sbjct: 228 AAACAALADASQVTGHVRVIVPGGEVEVEITEDGS-TLTGPSRIVATGETSL 278 >gi|257883704|ref|ZP_05663357.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501] gi|257819542|gb|EEV46690.1| diaminopimelate epimerase [Enterococcus faecium 1,231,501] Length = 266 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 100/273 (36%), Gaps = 13/273 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ K G GN +++D D S +L T + D ++ + + Sbjct: 1 MI-LHKYNGCGNDFILLDYAEDTDY--SQLAASLCTKEKYDTDGLIAVKIDP-----LEM 52 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG+RC R++ + F K + Sbjct: 53 IYYNKDGSRAPMCGNGIRCFARYVNDQNMMNEQEFNVETLAGTRKITVLDPSPFYCSVDM 112 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 P ++ + +N + + +F + G Sbjct: 113 GVPDDSPEKIKANQTYPIKNQEIEINGDKVTITSLFLGTIHTVVFVE--NAREEVWRKRG 170 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN- 243 L+ HP+F E N++ V + + L +RT+ERGVG T ACG+ CAS V + K + Sbjct: 171 ELICHHPLFKEKTNVNFVEVVNEQELIVRTYERGVGWTLACGTGCCASYVVAKETGKISA 230 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V V + G L+I + + M G A EW Sbjct: 231 DQVVVHLEQGDLMIS--GEDAIQMAGPAVHEWT 261 >gi|157272213|gb|ABV26738.1| diaminopimelate epimerase [Lactobacillus helveticus CNRZ32] gi|328468528|gb|EGF39533.1| diaminopimelate epimerase [Lactobacillus helveticus MTCC 5463] Length = 334 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D ++ + + L D +++++D Sbjct: 1 MVNLLKVHGSQNHFFILDQTELKQKLSDEELKKLTIKLTDPKTGLLDGADGVLVVNDPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + A +R+IN DGSE CGNG+R V R+L+ + ++ +F +T+ L +++ D Sbjct: 61 ENALAQMRVINADGSEASMCGNGLRTVARYLSEKYQKTNFLVDTMNASLRVRKDDD---- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRF-------HIGPVNHLFLRNPFVVSMGNPHAIFF 170 P ++ P+ + + + D P + LR + F Sbjct: 117 FASNVPAFAVEISPVHFNKEALPFDNLGHARLIDDFAPELYQGLRFSSIAVPNPHLISFV 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L G K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQRQITGPILGIIGKRLNDKNPYFTDGVNVNFAQILDKNRLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLD-- 280 A+ +A + + ++V GG + I ++N + + + G A + +D Sbjct: 237 SATSLAFCLTKPEIAEFDTPINVYNPGGMVKTIVHYENKNYWIELIGNATFTHQISIDEE 296 Query: 281 -IKTGKW----IKKNEDDEAY 296 ++ + I + + AY Sbjct: 297 YLRNSNFATAQITETTEQNAY 317 >gi|305680693|ref|ZP_07403500.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266] gi|305658898|gb|EFM48398.1| diaminopimelate epimerase [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 98/302 (32%), Gaps = 40/302 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52 + + F K G N +++ ++T I L D I+ + Sbjct: 12 TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 71 Query: 53 ---HDFQD----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIR 103 ++ + D F+ N DGS + CGNG R ++ SR FT T Sbjct: 72 LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 131 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G + + + + + +G + V MG Sbjct: 132 GAKPVTVHSFDDDNAVVSVAM---------GPATSLGESTCSMGGRMY----AGMGVDMG 178 Query: 164 NPH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERG 218 NPH A + F EGVN+ + + +R +ERG Sbjct: 179 NPHLACVVPGLTAEALADLTLDRPEFDAEFFPEGVNVEVLTELAHSPEGYRTHMRVYERG 238 Query: 219 VGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VG T +CG+ A+ A N V V++ GG + + + + G + G Sbjct: 239 VGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSALVATG 297 Query: 278 KL 279 +L Sbjct: 298 EL 299 >gi|323340626|ref|ZP_08080878.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644] gi|323091749|gb|EFZ34369.1| diaminopimelate epimerase [Lactobacillus ruminis ATCC 25644] Length = 341 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 136/322 (42%), Gaps = 36/322 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITS-----DAINALSTDDNT--HFDQIMLIHDFQDA 58 ++ K+ G GN ++D I+ AI D I+ + Sbjct: 16 MELIKVHGSGNDFFILDQEKLGRKISETELKQLAIKVCDRKHGFHGGADGILCVLPETRG 75 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113 V +R+IN DGSE CGNG+R V R+L+ + +KSF T+ L ++ + Sbjct: 76 DVLGRMRVINADGSEASMCGNGLRTVARYLSEKNGKKSFKVATMYADLEVEQANELAPGV 135 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + +V++ + + +++ D+ + F V++ NPH I FV+ Sbjct: 136 KTFAVEISPVSFSADDLKMHVGKEELHEDKLEMLSDELKF----SAVAVPNPHLISFVDH 191 Query: 174 DL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + ++ +F +GVN+S + S + + +RT+ERGVG T ACG+A Sbjct: 192 ETLVSEDLGRIASYLNDGENALFPDGVNVSFVEILSEDEIFVRTYERGVGYTNACGTAMS 251 Query: 231 ASVVASGCLHKTNRA-----VSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKLDI 281 AS + L KT+ +SVK GG + + ++ + FM+ G + + + Sbjct: 252 ASSL-MYVLEKTDGKGFEKTLSVKNPGGMVKTIVHRKEDGNYFMSLIGNGTFVAKCTVSL 310 Query: 282 K-------TGKWIKKNEDDEAY 296 + ++ + +Y Sbjct: 311 DEALLGDFSAATWEETGEQASY 332 >gi|152965469|ref|YP_001361253.1| diaminopimelate epimerase [Kineococcus radiotolerans SRS30216] gi|151359986|gb|ABS02989.1| Diaminopimelate epimerase [Kineococcus radiotolerans SRS30216] Length = 319 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 104/308 (33%), Gaps = 40/308 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56 + F K G N +++ N T+D + A+ D ++ Sbjct: 7 LAFTKGHGTENDFVLVADPDGVWNPTADVVAAICDRRAGVGGDGLIRAVRSSAVPDAAGT 66 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF-------LTSRMKRKSFTFETIRGILVAK 109 + F+ N DGS + CGNG+R F + F T G+ + Sbjct: 67 APGAEWFMDYRNSDGSLAEMCGNGVRVFAEFLLRNRLLPEEAGDGRWFDVATRSGVKRLR 126 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 DG + D+G L L D + P R V +GNPH + Sbjct: 127 READGQWTADLGPWALTGGDDALGAGSDA-----LVLVPGLDAVARPALSVDLGNPHTVV 181 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT-----------SLESLDLRTWERG 218 + D A P+ +G N+ + + + +R ERG Sbjct: 182 AL-PDEAELAAADLTRAPEVRPVPPQGTNVELVVPLLAFDVTGDDVPDIGEIAMRVHERG 240 Query: 219 VGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-----NHVFMTGEA 271 G T +CG+ ACA+ +A+ V + GG L++ V+++G A Sbjct: 241 SGETRSCGTGACAAALATRAWAGRGAPDVWRVDVPGGRLVVTVGAGSSLAQGTVWLSGPA 300 Query: 272 KKEWEGKL 279 + G L Sbjct: 301 QLVATGVL 308 >gi|299821568|ref|ZP_07053456.1| diaminopimelate epimerase [Listeria grayi DSM 20601] gi|299817233|gb|EFI84469.1| diaminopimelate epimerase [Listeria grayi DSM 20601] Length = 329 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 119/314 (37%), Gaps = 25/314 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAIN----ALSTDDN--THFDQIMLIHDFQDA 58 + F K+ G N +ID + T + + D ++ + +A Sbjct: 3 LTFIKVHGSQNDFFIIDEIDNRIVDWTDVNRRIFTKQICDRSHELGGADGVLFVSASINA 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR-----D 113 +R+ N D SE CGNG+R V R+L + K ET++ L + Sbjct: 63 GAAYKMRVFNSDTSEASMCGNGLRTVARYLLEKEDEKQLIVETMKANLEVAQAESLGFGI 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V++ + + + +P + + + N L V + + + Sbjct: 123 PTYQVEISPVLFEPEALPFHYNGKAVFNEPIPELD-NELAFSTVAVPNPHLISFVDQEQL 181 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 D + + +P F +GVN+S + + + + +RT+ERGVG T ACG+A AS Sbjct: 182 DSDKQETLASYLNGE-NPYFPDGVNVSFVKRLAADKIYVRTFERGVGFTNACGTAMSASS 240 Query: 234 VASGCLHK--TNRAVSVKMLGGGLLI--EWHDNN--HVFMTGEAKKEWEGKLDIKTGKWI 287 + L V GG + + E D+ + + G A G + + I Sbjct: 241 LIKKQLDDDTLEAVTHVYNDGGRVQVTAEQADDGTYKLHLIGNATFTKTGIVRFDEAEGI 300 Query: 288 -----KKNEDDEAY 296 K+ ++E Y Sbjct: 301 SVIQAKETGEEENY 314 >gi|269127488|ref|YP_003300858.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183] gi|268312446|gb|ACY98820.1| diaminopimelate epimerase [Thermomonospora curvata DSM 43183] Length = 273 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 109/296 (36%), Gaps = 36/296 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS----- 59 + F K G N +++ ++ + AL D ++ + + A Sbjct: 1 MRFIKGHGTENDFVILPDPDGALDLRPATVAALCDRRAGIGADGVLRVVRTKAAGDPIAE 60 Query: 60 -----VDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENR 112 + F+ N DGS + CGNG+R R+ + T G+ Sbjct: 61 ELAGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEWDVATRAGLRRVTLGP 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G +SVDMG P++ + VSMGNPH V+ Sbjct: 121 SGDVSVDMGAPLVQGR-----------------GRARLAGEDFTGLRVSMGNPHLACPVD 163 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + DL + + F +GVN+ + R+ +++R ERG G T +CG+ A A+ Sbjct: 164 RPVAELDLTRPPQVDERD--FPDGVNVELFRIVGDRQVEMRVHERGSGETRSCGTGAVAT 221 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 VA+ + + + GG + + + G A EG++ W++ Sbjct: 222 AVAAAGEDPSPGEWIIDVPGGRVTVTLDGRTS-HLRGPAVLVAEGEIR---ADWLR 273 >gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM] gi|227903732|ref|ZP_04021537.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796] gi|58254473|gb|AAV42710.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM] gi|227868619|gb|EEJ76040.1| diaminopimelate epimerase [Lactobacillus acidophilus ATCC 4796] Length = 334 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 25/317 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D +++T + A + D +++I+ Sbjct: 1 MVNLLKVHGSQNHFFILDQTELDNSLTDKELRAFTKKITNPKTGILNGADGVLVINKSVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA--KENRDGS 115 + A +R+IN DGSE CGNG+R V R+L+ + ++ F +T+ L +EN Sbjct: 61 KNSLAQMRVINEDGSEASMCGNGLRTVARYLSEKYQKDHFLIDTMNASLRVHKEENFAKG 120 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD- 174 + E + +++ NPH I FV + Sbjct: 121 VPAYSVEISPVRFNKEALPFTNLGHNRLIDTFVPEIYPGLRFTSIAVPNPHLINFVNQEQ 180 Query: 175 LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + L + G +P F++GVN++ A++ L +RT+ERGVG T ACG+ A+ Sbjct: 181 IAGPILGNIGKRLNDNNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGMSATS 240 Query: 234 VASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL---DIKT 283 +A H N + V GG + + H ++ + +TG A + D++ Sbjct: 241 LALLLTHPDMVDINSKIDVFNPGGMVQTKVHYDDSTYWIELTGNATITHHIIISKSDLRN 300 Query: 284 GKW----IKKNEDDEAY 296 + I + ++ +AY Sbjct: 301 NNFANVQISETKEQQAY 317 >gi|296269114|ref|YP_003651746.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833] gi|296091901|gb|ADG87853.1| diaminopimelate epimerase [Thermobispora bispora DSM 43833] Length = 270 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 66/286 (23%), Positives = 114/286 (39%), Gaps = 32/286 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------Q 56 + F K G N ++I ++ + + A+ D ++ + Q Sbjct: 1 MRFVKGHGTENDFVIIPDPEGRLELSPETVAAICDRRTGIGGDGVLRVVPTARCPEVADQ 60 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVAKENRDG 114 + F+ N DGS + CGNG+R R+L F T G+ + +G Sbjct: 61 AGEAEWFMDYRNADGSLAEMCGNGVRVFARYLVDAGLAAPGEFGVATRAGVRRVRIAAEG 120 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++VDMG P + R + + L VSMGNPH +ED Sbjct: 121 DVTVDMGRP-------------RVLGESRTAVDGREYQGLG----VSMGNPHLACLIEDP 163 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + DL+ +F +GVN+ + +T + +R +ERG G T +CG+ A A+ V Sbjct: 164 VAGLDLSR--PPRFDAAVFPDGVNVELFNLTGDHRVTMRVYERGSGETRSCGTGAVATAV 221 Query: 235 ASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A+ +V++ GG + + ++TG A G++ Sbjct: 222 AAARAVGEETGTWAVRVPGGVVTVTLDATTS-WLTGPAVLVASGEI 266 >gi|256786059|ref|ZP_05524490.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289769955|ref|ZP_06529333.1| diaminopimelate epimerase [Streptomyces lividans TK24] gi|289700154|gb|EFD67583.1| diaminopimelate epimerase [Streptomyces lividans TK24] Length = 266 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 101/282 (35%), Gaps = 25/282 (8%) Query: 6 VDFAKMEGIGNKILVIDMR--GCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K+ G GN +++ ++ + +A + D +++ D+ Sbjct: 1 MRFRKIHGAGNDFILLSNLGLDYDNDWSKEAERLCARRTGVGADGLVISRLINDSPAVLE 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N D S CGN +RC + + G++ D S+ V Sbjct: 61 VACFNADSSVATMCGNALRCSAWAAHRDHGFQQMSLRM-AGVVHEAVVSDESVWVTAEVG 119 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 + + + + D H G H + V+D + Sbjct: 120 AVLPRRLQAVINGRPTWFDSAH----------------TGTEHVVAIVDDVDAIDAVMVG 163 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + + G N++ + T ++L LRT+ERGV T +CGS A A+VV + Sbjct: 164 RLVRHHIDLAPLGTNVNFVQSTGQQALKLRTYERGVEAETLSCGSGAVAAVVVATMRGLV 223 Query: 243 NRA-VSVKMLGGG-LLIEWHD---NNHVFMTGEAKKEWEGKL 279 R V+V G L + HD N ++ G +EG L Sbjct: 224 ARRAVTVHNRAGEPLTVRPHDARPNRTHWVGGPVTHTFEGVL 265 >gi|312880978|ref|ZP_07740778.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] gi|310784269|gb|EFQ24667.1| diaminopimelate epimerase [Aminomonas paucivorans DSM 12260] Length = 275 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 28/269 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCH---DNITSDAINALSTDDNTHFDQIMLIHDFQDASVD 61 M +AK+ G GN LV+D+RG + ++A +++ D ++L+ + ++ Sbjct: 1 MTRYAKLHGNGNDFLVLDLRGTPGEGKDHAAEARALCRREESLGADGLLLVESS--SRLN 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC+ R+ + + FET+ G + A+ + Sbjct: 59 FRMRLFNRDGSEGEMCGNGARCIARYAWETGIAPAEMAFETLGGDVHARVDAPF------ 112 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + L + + + +++G PH + F+E DL Sbjct: 113 ---------VRLRLAEVDLGDATWERKTSAGGQELAYSFLTVGVPHCVVFLE-DLATRPR 162 Query: 181 ASFGNLLA----KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVA 235 L + +F G N++ + T+ERGV LT +CG+ + A+ V Sbjct: 163 EELFRLGRELRGRTDLFPRGTNVNFLAPEKEGLFLI-TYERGVEDLTRSCGTGSVAAAVT 221 Query: 236 SGCLHKTNRAVSVKMLGGGLLIEWHDNNH 264 + L + V V+ LGG + D+ Sbjct: 222 ARRLGRCGDDVKVRNLGGINRVLLEDSGP 250 >gi|331702340|ref|YP_004399299.1| diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929] gi|329129683|gb|AEB74236.1| Diaminopimelate epimerase [Lactobacillus buchneri NRRL B-30929] Length = 330 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-----DNT--HFDQIMLIHDFQD 57 MV K+ G NK ++D ++ + AL+ D +++I D Sbjct: 1 MVQLLKVHGSQNKFFILDQTALQTKLSQPELVALAKHITEPETGLLDGADGLLVIDDSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + F ET+ L Sbjct: 61 PDTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKFGKDQFKVETMDSDLHVHRE----AD 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + P ++ P+ + + + D + +S+ NPH I FV Sbjct: 117 LADNVPTFSVEISPVTFAKETLPFDNLGTDTLINKAVPEFAPGLKFTAISVPNPHLISFV 176 Query: 172 EDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ ++ L G + +P F +GVN+S A++ +L +RT+ERGVG T ACG+ Sbjct: 177 DEETMHSKTLGQLGKMLNDPNPYFPDGVNVSFAQILDHNTLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKL--- 279 A+ +A H + +SV GG + D + + G A + ++ Sbjct: 237 SATSLAFCLNHPEMADFDELISVYNPGGMVKTRVHSRDDTFSIDLIGNATFTHKIEIPEA 296 Query: 280 DIKTGKWI----KKNEDDEAY 296 D+ + ++ AY Sbjct: 297 DLHANDLEHAQVTETDEQPAY 317 >gi|153876715|ref|ZP_02003894.1| diaminopimelate epimerase [Beggiatoa sp. PS] gi|152066821|gb|EDN66106.1| diaminopimelate epimerase [Beggiatoa sp. PS] Length = 300 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 18/263 (6%) Query: 36 NALSTDDNT-HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94 D I+ + +VD +R+ N DGSE + CGNG+RC+ RF ++ + Sbjct: 12 KIFCDRAGILGADGILFFQNSD--NVDGKMRMFNPDGSEAEMCGNGLRCIGRFACEQLGQ 69 Query: 95 KSFTFETIRGILVAKENRDGS-----ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 ET++G+ ++ ++ L+ K IP+ F+ + + Sbjct: 70 NLVFIETLKGVSRVVNEKNIHPGVATYKAELNTISLNTKDIPINVHFESLIKQPLSTLSN 129 Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 F VSM NPH + V++ +F GVN++ +V + Sbjct: 130 KLTF----TAVSMPNPHIVAMVDNISDDELGQIGKKANEIKELFPNGVNVNFCQVIGEAA 185 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIEWHDNN---- 263 + +RT+ERGVGLT +CGS ++ + + L + ++ + V GG + E NN Sbjct: 186 IYVRTYERGVGLTNSCGSGMSSASLVACLLEQCSYDKPIDVYNRGGLVQCEVKKNNSHHY 245 Query: 264 HVFMTGEAKKEWEGKLDIKTGKW 286 VF++G A ++ + ++ + Sbjct: 246 SVFLSGNATFIFKNTITYESPNF 268 >gi|296129405|ref|YP_003636655.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109] gi|296021220|gb|ADG74456.1| diaminopimelate epimerase [Cellulomonas flavigena DSM 20109] Length = 321 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 60/301 (19%), Positives = 101/301 (33%), Gaps = 28/301 (9%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ---DASVDAF- 63 K G N +++D R ++ + L D ++ + + DA DA Sbjct: 22 TKGHGTQNDFVLLDDRDGALDLAPVLVRRLCDRRAGVGGDGVIRLVASELVPDAPDDARG 81 Query: 64 ----IRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSIS 117 + N DGS Q CGNG+R R+ + E V Sbjct: 82 TAWFMDYRNGDGSVAQMCGNGVRVFARYAQHLGLWDPEDGPLEVGTRAGVRTVVATAPEV 141 Query: 118 VDMGEPILDWKLIPLARSFDKM---DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 D + ++ L D + H+G + V + + E D Sbjct: 142 GDGPWFTVGMGVVTLVGGDDALASGGDAEVHVGGLAVTRPGLSVDVGNPHTVVVLAQEGD 201 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGVGLTAAC 225 L DL S + P+ ++G N+ + E + +R ERGVG T +C Sbjct: 202 LEQADLTSAPVV---RPVPADGTNVELVVPLGEEHAADGTAVGRVRMRVHERGVGETRSC 258 Query: 226 GSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 G+ A A+ A V + GG + + H + + G A E ++D+ Sbjct: 259 GTGAVAAAAAVRAWGGPQAPAVWLVDVPGGTVRVTLHPDGRADLAGPAVLVAEARVDLAA 318 Query: 284 G 284 Sbjct: 319 L 319 >gi|332188875|ref|ZP_08390581.1| diaminopimelate epimerase [Sphingomonas sp. S17] gi|332011084|gb|EGI53183.1| diaminopimelate epimerase [Sphingomonas sp. S17] Length = 311 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 18/291 (6%) Query: 6 VDF--AKMEGIGNKILVIDMRGCHDNITSDA--INALSTDDN-THFDQIMLIHDFQDASV 60 + F K G GN +ID R + A AL+ D ++L+ Sbjct: 1 MRFAIVKCHGSGNDFPMIDARALSLSEAEWAGVARALADRAGPVGGDGLLLLVPGDH-HA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + + + N DGSE ++C NG+RCV R + + T A + D V Sbjct: 60 EFGMVMRNSDGSEAETCLNGVRCVARAGFEALGIDAATVRLKTSYATAVRDEDLMPGVYT 119 Query: 121 GEPILDWKLI-----PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + P+ + D++ D + R V+M NPH + FVE Sbjct: 120 VRETAGPAGLSTAAWPIHGAPDRLVEDVLPMLDR----ARRFTAVTMPNPHLVHFVETVD 175 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + A + N+S V ++L +RT+ERGVGLT +CGSA AS A Sbjct: 176 EAELVRLGEICEAGPDWLPQRANVSFVEVRG-DTLFVRTFERGVGLTDSCGSAMAASTYA 234 Query: 236 SGCLHKT--NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 + + + V GG + ++ V ++G A EW G +++ G Sbjct: 235 ACLTGRIAWDSTTVVFNRGGLVRAFAGEDGMVTLSGNATYEWAGSVEVDLG 285 >gi|306822343|ref|ZP_07455722.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679] gi|309802151|ref|ZP_07696260.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022] gi|304554341|gb|EFM42249.1| diaminopimelate epimerase [Bifidobacterium dentium ATCC 27679] gi|308221231|gb|EFO77534.1| diaminopimelate epimerase [Bifidobacterium dentium JCVIHMP022] Length = 299 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 100/301 (33%), Gaps = 38/301 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K GN +V T+D + L D ++ + QD Sbjct: 8 YKAHATGNDFVVYADPDGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLA 67 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + F+ N DGS + CGNG R + F + G + Sbjct: 68 DCAAGQAEWFMDYRNADGSLAEMCGNGTRAITLFAQRQG------LADRPGGEPFRLGTR 121 Query: 114 GSISVDMGEPILD--WKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G + + ++ K + S+ + D D + + V MGNPH + Sbjct: 122 GGVKILTSLGEVEGLGKDVFRVEMGSWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVA 181 Query: 170 FVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVG 220 +ED L + P N+ +R ERG G Sbjct: 182 VIEDAFASLPTVEELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCG 241 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 T +CG+ CA+ + + ++ + GG L ++ D++ V +TG A GK++ Sbjct: 242 ETLSCGTGLCATAITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVE 297 Query: 281 I 281 + Sbjct: 298 L 298 >gi|86152026|ref|ZP_01070239.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 260.94] gi|85841134|gb|EAQ58383.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 260.94] Length = 249 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQ------NLDEFN 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|283953844|ref|ZP_06371374.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414] gi|283794623|gb|EFC33362.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni 414] Length = 249 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 95/277 (34%), Gaps = 32/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + D ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFIIANANEKQDR-STLAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS CGNG R F K + G + K N + Sbjct: 58 FYNNDGSRAPMCGNGSRAAAHFAHHINKIN-PNMSFLTGAKIIKANVNH----------- 105 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + ++ K ++ F + + G PH + F E +L F Sbjct: 106 --DRVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCE------NLDEFDT 151 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 +L + N++ ++ SL +RT+ERGV T ACG+ A + K Sbjct: 152 ILCQKMRQKYNANVNFVKILDKNSLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQN 211 Query: 245 AVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 212 EVKITPKSGE-EVRFKYKNEELFFEGKVKYCFEANYN 247 >gi|57238549|ref|YP_179680.1| diaminopimelate epimerase [Campylobacter jejuni RM1221] gi|81557401|sp|Q5HSQ5|DAPF_CAMJR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|57167353|gb|AAW36132.1| diaminopimelate epimerase [Campylobacter jejuni RM1221] gi|315058979|gb|ADT73308.1| Diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni S3] Length = 249 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|224282550|ref|ZP_03645872.1| Diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] gi|310287012|ref|YP_003938270.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17] gi|313139704|ref|ZP_07801897.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] gi|309250948|gb|ADO52696.1| Diaminopimelate epimerase [Bifidobacterium bifidum S17] gi|313132214|gb|EFR49831.1| diaminopimelate epimerase [Bifidobacterium bifidum NCIMB 41171] Length = 299 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 92/296 (31%), Gaps = 36/296 (12%) Query: 9 AKMEGIGNKIL-VIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF----------- 55 K GN + +D T+D + L D ++ + Sbjct: 8 TKAHATGNDFIAYLDS-DGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQV 66 Query: 56 ---QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA---K 109 D + F+ N DGS + CGNG R + F + E R A Sbjct: 67 AACDDGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQRCGVASTQVEEPFRLGTRAGVKT 126 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G ++ + S+ + D D F + V MGNPH + Sbjct: 127 LRPLGDVAPYGRDVFRV-----DMGSWRRGDLDAFTVTIPGTPGAARGTFVDMGNPHVVC 181 Query: 170 FVEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVG 220 +ED + P+ N RV +R ERG G Sbjct: 182 VIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGTGEATMRVNERGCG 241 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 T +CG+ CA+ + + + + GG + ++ + V +TG A + Sbjct: 242 ETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATLVAD 295 >gi|197121022|ref|YP_002132973.1| diaminopimelate epimerase [Anaeromyxobacter sp. K] gi|196170871|gb|ACG71844.1| Diaminopimelate epimerase [Anaeromyxobacter sp. K] Length = 266 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 109/285 (38%), Gaps = 24/285 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D A D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDG---PLMDAERARRICDRRRGVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVD 119 A + I N DGS CGNG+RCV R L +T G +R +V+ Sbjct: 59 TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGLDGDLVVDTDSGPKRCTIHRGADRAVE 118 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + F VSMGNPHA+ F + Sbjct: 119 AVSVEMGPARLEGEQEFRV------------GGEALRALRVSMGNPHAVLFDAPE----R 162 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + GVN+ AR +DL WERG GLT ACG+ ACA+ VA+ Sbjct: 163 ARALAVGPELERLVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAVAAVSR 221 Query: 240 HK--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 V V++ GG L I + V M G A++ + G+ D+ Sbjct: 222 GLARAAAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|291456378|ref|ZP_06595768.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213] gi|291381655|gb|EFE89173.1| diaminopimelate epimerase [Bifidobacterium breve DSM 20213] Length = 299 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 96/298 (32%), Gaps = 36/298 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D I L D ++ + + Sbjct: 8 TKTHATGNDFVVYLDKTGDFEPTADEIRFLCDRHFGIGGDGLIRLTKPEFVSDLSDEQIM 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 + F+ N DGS + CGNG R + F + F T G+ + Sbjct: 68 AVQAGDAEWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILT- 126 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 G++ + + D + + + V MGNPH + Sbjct: 127 -PRGNVKPYGANVFQVEM-----GEWKIGETDAYEVTIPGNDGSARGTFVDMGNPHVVAV 180 Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESL------DLRTWERGVGL 221 +ED + +P N+ R+ ++ +R ERG G Sbjct: 181 IEDAFSTLPVVEDLDLVTKPVVNPTIESDQNVEFVRIDDIDHNTAVGEATMRVNERGCGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ CA+ + + + GG L ++ D + V +TG A + L Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDED-VKLTGSATLVADIDL 296 >gi|212715493|ref|ZP_03323621.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM 16992] gi|212661575|gb|EEB22150.1| hypothetical protein BIFCAT_00390 [Bifidobacterium catenulatum DSM 16992] Length = 299 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 101/302 (33%), Gaps = 40/302 (13%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V T+D + L D ++ + Q Sbjct: 8 YKAHATGNDFVVYLDAEGTYEPTADEVRFLCDRHFGIGGDGLIRLTHPQAVSDLNDKQIA 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG R + F + + F T G+ V Sbjct: 68 VCAVGNADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAGQPGGEPFRLGTRAGVKVL 127 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 D + + S+ D D + + V MGNPH + Sbjct: 128 TSLGDVPALGNDVFQVEM-------GSWKCGDFDGYEVTIPGTAGSARGTFVDMGNPHVV 180 Query: 169 FFVED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGV 219 +ED L + P N+ + S +R ERG Sbjct: 181 AVIEDAFSSLPTVEQLDLVTKPVVSPQIESDQNVEFVRIDEQSEGDNEGSATMRVNERGC 240 Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 G T +CG+ CA+ + + ++ + GG L ++ D++ V +TG A GK+ Sbjct: 241 GETLSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDDD-VKLTGSATIV--GKI 296 Query: 280 DI 281 ++ Sbjct: 297 EL 298 >gi|86156998|ref|YP_463783.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773509|gb|ABC80346.1| diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-C] Length = 266 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 113/284 (39%), Gaps = 22/284 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D + A D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + I N DGS CGNG+RCV R L G LV + Sbjct: 59 AATMHIFNSDGSVAAMCGNGIRCVARHLADARGL--------DGDLVLDTDSGPKRCTIH 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + + +++ ++ + L VSMGNPHA+ F + Sbjct: 111 RGPGGAVEAVSVEMGPARLEGEQEYRVGGEAL---RALRVSMGNPHAVLFDAPE----RA 163 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + + GVN+ AR +DL WERG GLT ACG+ ACA+ VAS Sbjct: 164 RALAVGPELERLVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAVASVSRG 222 Query: 241 K--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 V V++ GG L I + V M G A++ + G+ D+ Sbjct: 223 LARAGVPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|319948154|ref|ZP_08022316.1| diaminopimelate epimerase [Dietzia cinnamea P4] gi|319438183|gb|EFV93141.1| diaminopimelate epimerase [Dietzia cinnamea P4] Length = 319 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 95/294 (32%), Gaps = 34/294 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + F K G N +++ N+ + AL D I+ I Sbjct: 23 IAFLKGHGTLNDFVILPDDHAELNLDETLVRALCDRRGGIGADGILRIATAGALVDRGVL 82 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVA 108 D F+ N DGS + CGNG+R L + + T T G A Sbjct: 83 PALPDGVDPADWFMDYRNADGSIAEMCGNGVRVFAHALVATHRADIGTIAIGTRSGPRPA 142 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 + + + +L+ L+ + V MGNPH Sbjct: 143 TIVSRSGDDAVVRVDMGEPRLLGLSSA-------------ELGGRTFAGVAVDMGNPHLA 189 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + D L F GVN+ IA + + +R ERG G T +CG Sbjct: 190 CVVPGLDAAALAALPVADPPTFDRDFFPHGVNVEIATPLTGGRVTMRVHERGAGETMSCG 249 Query: 227 SAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + +V A + + V V + GG + + D +TG + G+ Sbjct: 250 TGIVATAVAALADAGRGSGDVVVAVPGGEVEVHLADGGS-TLTGPSALVASGRF 302 >gi|300771566|ref|ZP_07081441.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33861] gi|300761555|gb|EFK58376.1| diaminopimelate epimerase [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 39/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDAF 63 + F K +G GN ++ID R ++A D +ML+ + D Sbjct: 5 IKFYKYQGAGNDFILIDNRNGAFERANEAFIKQICDRRFGVGADGLMLLQ--DTKNFDFE 62 Query: 64 IRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DG E CGNG RC+V F + R+ F + G A+ + +++ M + Sbjct: 63 MVYYNADGREGSMCGNGGRCIVAFARDLDIIRQDAAFLAVDGPHQAQIHD-NQVNLQMID 121 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 K +V++ G+PH I V D Sbjct: 122 VDQITKD-------------------------ETAYVLNTGSPHFIKIVSDLKNMDVYKE 156 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 + +EG+N++ +RT+ERGV T ACG+ A A+ +A Sbjct: 157 GYTIRNNATYKNEGINVNFVEKE-ENGYFVRTFERGVEDETLACGTGATAAAMAMSIEEN 215 Query: 242 TNRAVS--VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKL 279 + +++LGG L I + V++ G AK +EG + Sbjct: 216 MEGQIEIPIRVLGGQLYISFFKKGLTFREVYLKGPAKYVFEGNI 259 >gi|148925686|ref|ZP_01809374.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845696|gb|EDK22787.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8486] Length = 249 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSTLAKELCNRYEGIGGDGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TILCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQ 210 Query: 244 RAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 V + G + + N +F G+ K +E + Sbjct: 211 NKVKITPKSGE-EVGFTYKNEELFFEGKVKYCFEANYN 247 >gi|118471346|ref|YP_887068.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] gi|166225733|sp|A0QVY0|DAPF_MYCS2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118172633|gb|ABK73529.1| diaminopimelate epimerase [Mycobacterium smegmatis str. MC2 155] Length = 291 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 108/305 (35%), Gaps = 31/305 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----------- 52 M+ FAK G N +V+ ++T A+ AL D ++ + Sbjct: 1 MI-FAKGHGTENDFVVLPDLDAALSLTPSAVAALCDRRRGLGADGVLRVTRAGAARAAGV 59 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 ++ D ++ N DGS Q CGNG+R +L + E+ +V Sbjct: 60 FDRLPDGVSAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASG------LESADEFVVGS 113 Query: 110 ENRDGSISVDMGEPIL-DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + +P + + V + V +GNPH Sbjct: 114 LAGPRPVVLHGFDPARATTAEVTVEMG---KANQFGAGSAVVGGRSFDGLAVDVGNPHLA 170 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L + +F +GVN+ + + ++ +R ERGVG T +CG+ Sbjct: 171 CVGITADDLAALDVAAPVSFDPALFPDGVNVEVLTASVDGAVSMRVHERGVGETRSCGTG 230 Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ VA+ + + V++ GG + + ++ ++ G + G+LD W Sbjct: 231 TVAATVAALAHDGADTGTLRVRIPGGEVTVTVTESTS-YLRGPSVLVARGELDPH---WW 286 Query: 288 KKNED 292 Sbjct: 287 HAVAG 291 >gi|311063885|ref|YP_003970610.1| diaminopimelate epimerase DapF [Bifidobacterium bifidum PRL2010] gi|310866204|gb|ADP35573.1| DapF Diaminopimelate epimerase [Bifidobacterium bifidum PRL2010] Length = 299 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 92/296 (31%), Gaps = 36/296 (12%) Query: 9 AKMEGIGNKIL-VIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF----------- 55 K GN + +D T+D + L D ++ + Sbjct: 8 TKAHATGNDFIAYLDS-DGRFEPTADEVRQLCDRHFGIGADGLLRLTKPQYVADLSEAQV 66 Query: 56 ---QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIR---GILVAK 109 D + F+ N DGS + CGNG R + F + E R V Sbjct: 67 AACDDGDAEWFMDYRNADGSLAEMCGNGTRAIALFAQRCGVASTQVGEPFRLGTRTGVKT 126 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G ++ + S+ + D D F + V MGNPH + Sbjct: 127 LRPLGDVAPYGRDVFRV-----DMGSWRRGDLDAFTVTIPGTPGAARGTFVDMGNPHVVC 181 Query: 170 FVEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVT------SLESLDLRTWERGVG 220 +ED + P+ N RV +R ERG G Sbjct: 182 VIEDAMSTLPRVEDLDLVTKPEVSPVLESDQNAEFVRVDEIDAAAGAGEATMRVNERGCG 241 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 T +CG+ CA+ + + + + GG + ++ + V +TG A + Sbjct: 242 ETLSCGTGLCATAITLRAKTGVD-HWDITVRGGTVRVDVT-DETVALTGSATLVAD 295 >gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703] gi|118765769|dbj|BAF39948.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703] Length = 299 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 97/299 (32%), Gaps = 34/299 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V T+D + L D ++ + Q Sbjct: 8 YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 D F+ N DGS + CGNG R + F + + Sbjct: 68 DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAD----QPGGKPFHLGTRAG 123 Query: 114 GSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + +G+ K + ++ + D D + + V MGNPH + + Sbjct: 124 VKVLTSLGDVPGLGKDVFQVEMGAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVVAVL 183 Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222 ED L + + P N+ +R ERG G T Sbjct: 184 EDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGCGET 243 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ CA+ + + ++ + GG L ++ D + V +TG A GK+++ Sbjct: 244 LSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKIEL 298 >gi|312195029|ref|YP_004015090.1| diaminopimelate epimerase [Frankia sp. EuI1c] gi|311226365|gb|ADP79220.1| diaminopimelate epimerase [Frankia sp. EuI1c] Length = 340 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 118/330 (35%), Gaps = 60/330 (18%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 V F K +G GN +++ +T + AL D ++ + Sbjct: 22 VRFVKGQGTGNDFVIVPDPDGELELTPRLVRALCDRRFGIGADGVLRVVLTAAEPSAAGL 81 Query: 53 ---------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 F+ N DGS + CGNG+R R+L Sbjct: 82 GNSWAADLPDGRRAPAESRTARPAGAGGARWFMDYRNADGSIAEMCGNGLRVFGRYLVDA 141 Query: 92 MKRKSFTF--ETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 ++ T G+ +A +G ++V+MG P + PL + F Sbjct: 142 GYERAGLIPVATRAGVRLADVPNEGDVTVEMGPPTIG----PLGAERVSIAGRTFE---- 193 Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--SL 207 VSMGNPHA+ F + DL DL + + + + + Sbjct: 194 -------ATNVSMGNPHAVCFAD-DLAEADLNALDLTRLPQVSPAAYPTGANVEIVIGAP 245 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR--AVSVKMLGGGLLIEWHDNNHV 265 +++ +R +ERGVG T +CG+ ACA VA+ + V + GG + + W + V Sbjct: 246 DAVRMRVYERGVGETLSCGTGACAVAVAAATRAGRGPGTVIPVDVPGGRVTVLWDSDQ-V 304 Query: 266 FMTGEAKKEWEGKLDIKTGKWIKKNEDDEA 295 + G A EG + W+ + A Sbjct: 305 RLRGPAVLVSEG---LLRSDWLAAAQAGSA 331 >gi|328957136|ref|YP_004374522.1| diaminopimelate epimerase [Carnobacterium sp. 17-4] gi|328673460|gb|AEB29506.1| diaminopimelate epimerase [Carnobacterium sp. 17-4] Length = 326 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 120/288 (41%), Gaps = 24/288 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQDA 58 VD K+ G N+ ++D +T D + +L + D ++LI Sbjct: 3 VDLIKVHGSENEFFILDETLLERTLTQDELVSLTQIITDRNKGLLKGADGVLLIGTTNHK 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE-----NRD 113 D +R+IN DGSE CGNG+R V R+L+ + K+ F ET+ L K+ Sbjct: 63 ETDGSMRVINYDGSEASMCGNGLRTVARYLSEKNKKNEFVVETMHADLHVKKAEELGKDI 122 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + V++ + + +P +K N F V++ NPH I FV+ Sbjct: 123 QTFQVEISPVSFNVENLPFNWESEKFIDQELSELATNLRF----SAVAVPNPHLISFVDH 178 Query: 174 DLYHYDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + + +P F +GVN+S V +SL +RT+ERGVG T ACG+A A Sbjct: 179 ETLYSSQFEDLATYLNGKNPYFPDGVNVSFVEVLDKQSLFVRTFERGVGFTNACGTAMAA 238 Query: 232 SV--VASGCLHKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273 S + + V GG + + ++ +M G A Sbjct: 239 SSLMYVLLKNGQLEEKIQVTNPGGMVQTVVHKDEDGTYWMDLIGNATY 286 >gi|227893381|ref|ZP_04011186.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047] gi|227864796|gb|EEJ72217.1| diaminopimelate epimerase [Lactobacillus ultunensis DSM 16047] Length = 334 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 145/321 (45%), Gaps = 33/321 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAIN----ALST-DDNT--HFDQIMLIHDFQD 57 MV+ K+ G N ++D +T + + +S D +++I+ Sbjct: 1 MVNLLKVHGSQNHFFILDQTELESPLTDNELKSFTKKISDPKTGLLNGTDGVLVINKPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R+L+ + + SF +T+ L ++++D Sbjct: 61 EHALAQMRVINADGSEASMCGNGLRTVARYLSEKYHKTSFLVDTMNASLRVRKDKD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI-FF 170 P ++ P+ A FD + DR + ++ +++ NPH I F Sbjct: 117 FAPNVPAFAVEISPVRFNKEALPFDNLGYDRLIDNYIPEIYPGLRFTSIAVPNPHLISFM 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + L + G K+P F++GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 177 NQKQITGPILGTVGKRLNDKNPYFTDGVNVNFAQILDKNKLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNH-VFMTGEAKKEWEGKL--- 279 A+ +A H + +SV GG + + + ++ + + + G A L Sbjct: 237 SATSLALVLTHPEMADLDTPISVYNPGGMVKTVVHYEESQYWIELIGNATFTHHLSLDEA 296 Query: 280 DIKTGKW----IKKNEDDEAY 296 D++TG + I + + AY Sbjct: 297 DLRTGTFEHVKITETNEQTAY 317 >gi|313123791|ref|YP_004034050.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280354|gb|ADQ61073.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 328 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 131/322 (40%), Gaps = 33/322 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 M K+ G N ++D + +T + + L D I+ + + Sbjct: 1 MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET+ + + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVETM--YADLAVRQADDFA 118 Query: 118 VDMGEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVE 172 + ++ I + FD + +R V L F +++ NPH I F E Sbjct: 119 EGVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKE 178 Query: 173 DDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +DL L G ++P FS+GVN++ + L +RT+ERGVG T ACG+ A Sbjct: 179 EDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSA 238 Query: 232 SVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE---------- 274 S +A L + +SV GG + H +H + + G A + Sbjct: 239 SSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPEDQL 298 Query: 275 WEGKLDIKTGKWIKKNEDDEAY 296 G++ ++ K K+ + AY Sbjct: 299 HSGQVKLEAVK-TKETGEQAAY 319 >gi|296393367|ref|YP_003658251.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985] gi|296180514|gb|ADG97420.1| diaminopimelate epimerase [Segniliparus rotundus DSM 44985] Length = 308 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 92/302 (30%), Gaps = 29/302 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 V F K G N ++I ++ + + L D ++ Sbjct: 17 VPFVKGHGTQNDFVLIADPDAQLSLGVETVALLCDRRAGIGGDGLIRAARAGALRASGAI 76 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 D F+ N DG V+ CGNG R FL + E + Sbjct: 77 AQLPDGVGDEDWFMDYRNADGGVVEMCGNGARVFAHFLRALG------LEPRGDYAIGTR 130 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF- 169 + + + + + ++ + +GNPH + Sbjct: 131 AGAKRVRLLSFD--GGGAEVSVEMGRVRLGGPSATSVAGAPRGCFSGTSADVGNPHLVCL 188 Query: 170 FVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 DL +F EGVN+ S + LR ERGVG T ACG+ Sbjct: 189 AQGLDLDGLAALDLTRQPDYDKAVFPEGVNIEFVVPHSPDKATLRVHERGVGETKACGTG 248 Query: 229 ACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 + A+ L + V V GG + + + G + G+ D W+ Sbjct: 249 SVAAAAVVLAELGSGSGEVVVASPGGVVQAYVGPDGSAVLRGPSALVARGEFD---KAWL 305 Query: 288 KK 289 ++ Sbjct: 306 QQ 307 >gi|332654264|ref|ZP_08420008.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16] gi|332517350|gb|EGJ46955.1| diaminopimelate epimerase [Ruminococcaceae bacterium D16] Length = 234 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 23/233 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGC-HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F KMEG+GN + ++ +++ A+ D ++ I ++ D + Sbjct: 22 MRFTKMEGLGNDYIYLNCLKEVPEDLPGLAVTLSDRHFGVGADGLICIRLGREG--DFTM 79 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGE 122 + N DGS CGNG+RCV +++ ++ T +T G + + G ++ Sbjct: 80 EMYNADGSRGAMCGNGIRCVGKYVYDNALTRKTCLTIDTDAGPRFLRLHVLGGQVREVTV 139 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + KL P + + V MGNPH + F + DL Sbjct: 140 DMGEPKLSP-----------------PLEVQGETVYPVDMGNPHGVIFC-PEPEEIDLEV 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 G L + P F N+ V + + L +R WERG G T ACG+ ACA + A Sbjct: 182 RGAALGRDPAFPGEWNIEFVAVEARDRLRVRVWERGSGPTLACGTGACAVLAA 234 >gi|225021208|ref|ZP_03710400.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii ATCC 33806] gi|224945941|gb|EEG27150.1| hypothetical protein CORMATOL_01220 [Corynebacterium matruchotii ATCC 33806] Length = 307 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 97/302 (32%), Gaps = 40/302 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52 + + F K G N +++ ++T I L D I+ + Sbjct: 14 TTIAFTKGHGTQNDFIILPDPEAQLSLTPQLIATLCDRQRGIGADGILRVATTGALRRAG 73 Query: 53 ---HDFQD----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIR 103 ++ + D F+ N DGS + CGNG R ++ SR FT T Sbjct: 74 LLTNNPTSLEAISDDDWFMDYYNADGSVAEMCGNGTRVFAHYVRSRGLVTTDQFTIGTRA 133 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G + + + + + +G + V MG Sbjct: 134 GAKPVIVHSFDDDNAVVSVAM---------GPATSLGESTCSMGGRMY----AGMGVDMG 180 Query: 164 NPH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERG 218 NPH A + F EGVN+ + +R +ERG Sbjct: 181 NPHLACVVPGLTAEALADLTLDRPEFDTEFFPEGVNVEVLTELVHSPEGYRTHMRVYERG 240 Query: 219 VGLTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEG 277 VG T +CG+ A+ A N V V++ GG + + + + G + G Sbjct: 241 VGETRSCGTGTVAAARAALAYAGFVNGTVMVQIPGGQVEVTIDGDTS-TLRGPSALVATG 299 Query: 278 KL 279 +L Sbjct: 300 EL 301 >gi|50955208|ref|YP_062496.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648661|sp|Q6AE05|DAPF_LEIXX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|50951690|gb|AAT89391.1| diaminopimelate epimerase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 292 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 34/302 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD----- 57 + + F K +G GN ++ +++ I + D ++ + Sbjct: 2 ATLHFTKGQGTGNDFVLYADPDGTLPLSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGA 61 Query: 58 ------ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKEN 111 + + F+ N DGS + CGNG+R VR+ ++ + + + + Sbjct: 62 EALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRY---LIESRLVQLADGDTLPIGTRS 118 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + + +D LA + R + +GNPH + + Sbjct: 119 GVRDVQRTLSGFQVDLGRWRLAGGEPLVRAKEL-------PVARLGLGIDLGNPHVVVAL 171 Query: 172 EDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLTAAC 225 D + A + P G N+ + +R ERG G T +C Sbjct: 172 -ADESELESADLTYIPHLEPAPQGGANVEFVVPHEPLVKDGVGRIRMRVHERGSGETLSC 230 Query: 226 GSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW---HDNNHVFMTGEAKKEWEGKLD 280 G+ A A+ +A N V + GG + + D HV ++G A+ + G L+ Sbjct: 231 GTGAAAAALAVRHWAGENAPGQWWVDVPGGTVGVRMFPTEDGEHVALSGPAELVYTGALE 290 Query: 281 IK 282 + Sbjct: 291 LA 292 >gi|154488994|ref|ZP_02029843.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis L2-32] gi|154083131|gb|EDN82176.1| hypothetical protein BIFADO_02304 [Bifidobacterium adolescentis L2-32] Length = 299 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 97/299 (32%), Gaps = 34/299 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V T+D + L D ++ + Q Sbjct: 8 YKAHATGNDFVVYLDEDGTHEPTADEVRFLCDRHFGIGGDGLIRLAHPQAVSDVNERQIA 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 D F+ N DGS + CGNG R + F + + Sbjct: 68 DCAAGDADWFMDYRNADGSLAEMCGNGTRAITLFAQRQGIAD----QPGGKPFHLGTRAG 123 Query: 114 GSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 I +G+ K + ++ + D D + + V MGNPH + + Sbjct: 124 VKILTSLGDVPGLGKDVFQVEMGAWKRGDVDGYEVTIPGTSGSARGTFVDMGNPHVVAVL 183 Query: 172 ED---DLYHYDLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLT 222 ED L + + P N+ +R ERG G T Sbjct: 184 EDAFASLPNVEDLDLVTKPVVAPEIPSDQNVEFVRIDEQSEGDDAGEATMRVNERGCGET 243 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ CA+ + + ++ + GG L ++ D + V +TG A GK+++ Sbjct: 244 LSCGTGLCATAITLRAKTGID-HWTITVRGGTLRVDVTDED-VKLTGSATIV--GKIEL 298 >gi|325125792|gb|ADY85122.1| Diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 328 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 81/323 (25%), Positives = 133/323 (41%), Gaps = 35/323 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 M K+ G N ++D + +T + + L D I+ + + Sbjct: 1 MSKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET + A + Sbjct: 61 PGVLRKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVET----MYADLAVRQADD 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FF 170 G P ++ P+ + FD + DR V L F +++ NPH I F Sbjct: 117 FAEGVPAFGVEISPVRFNKGSLPFDNLGHDRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G ++P FS+G+N++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGININYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL--- 279 AS +A L + +SV GG + H +H + + G A + ++ Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPED 296 Query: 280 DIKTGKWI------KKNEDDEAY 296 + +G+ ++ + AY Sbjct: 297 QLHSGQVKLEAVKTEETGEQAAY 319 >gi|225874899|ref|YP_002756358.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196] gi|225794515|gb|ACO34605.1| diaminopimelate epimerase [Acidobacterium capsulatum ATCC 51196] Length = 265 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 101/280 (36%), Gaps = 26/280 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K + GN L+++ + + AI D + + + IR Sbjct: 1 MQFVKADACGNDFLIVEGKAD----AALAIALCQRHTGVGADGVEFLE--KTGPHSGTIR 54 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSISVDMGE 122 ++N DGS + GNG RCV ++ + T T G + M Sbjct: 55 LVNADGSIAEISGNGTRCVAAWMAHESHARPGDTITLTTDAGARACRVVSADGAKFLMAT 114 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI---FFVEDDLYHYD 179 + +P R + + VV GNPH + + + +D Sbjct: 115 GMG----VPTVRHG---------MVKLPQGITVEGSVVHTGNPHFVIEVQSGDFTVQGHD 161 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 G + HP F N+ ++ +R +ERGVG T + G+ CAS A+ Sbjct: 162 WREIGKAICFHPDFPAQTNVEFVHFIDTNTVAIRIYERGVGPTTSSGTGTCASAAATIAA 221 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNN-HVFMTGEAKKEWEGK 278 + + V GG +EW + +TG A+ +G+ Sbjct: 222 ARAASPLRVIAEGGEQRVEWAGQGAEITLTGPAELICQGE 261 >gi|325686132|gb|EGD28183.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 328 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 132/322 (40%), Gaps = 33/322 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 M K+ G N ++D + +T + + L D I+ + + Sbjct: 1 MTKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEESSH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + + F ET+ + + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTRESQFKVETM--YADLAVRQADDFA 118 Query: 118 VDMGEPILDWKLIPLARS---FDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FFVE 172 + ++ I + FD + +R V L F +++ NPH I F E Sbjct: 119 EGVPAFGVEISPIRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFIKE 178 Query: 173 DDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 +DL L G ++P FS+GVN++ + L +RT+ERGVG T ACG+ A Sbjct: 179 EDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGMSA 238 Query: 232 SVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKE---------- 274 S +A L + +SV GG + H +H + + G A + Sbjct: 239 SSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTTEIPEDQL 298 Query: 275 WEGKLDIKTGKWIKKNEDDEAY 296 G++ ++ K K+ + AY Sbjct: 299 HSGQVKLEAVK-TKETGEQAAY 319 >gi|220915716|ref|YP_002491020.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953570|gb|ACL63954.1| Diaminopimelate epimerase [Anaeromyxobacter dehalogenans 2CP-1] Length = 266 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 113/284 (39%), Gaps = 22/284 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ + F K G+GN +V+D + A D ++ + + A Sbjct: 2 MRRVPLPFVKYHGLGNDFVVVDG---PLMDAARARRICDRRRGVGADGVLTVLPPRTAGA 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + I N DGS CGNG+RCV R L G LV + Sbjct: 59 TATMHIFNSDGSVAAMCGNGIRCVARHLADTRGL--------DGDLVVDTDSGPKRCTIH 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + + + +++ ++ L VSMGNPHA+ F + Sbjct: 111 RGPGGAVEAVSVEMGPARLEGEQEFRVGGEAL---RALRVSMGNPHAVLFDAPE----RA 163 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + A + GVN+ AR +DL WERG GLT ACG+ ACA+ VA+ Sbjct: 164 RALAVGPALERLVPGGVNVGFARP-GPSGIDLVVWERGAGLTDACGTGACAAAVAAVSRG 222 Query: 241 K--TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKLDI 281 V V++ GG L I + V M G A++ + G+ D+ Sbjct: 223 LARAGAPVEVRLPGGALAITVAPDLVGVTMRGPAERAFTGETDL 266 >gi|72161220|ref|YP_288877.1| diaminopimelate epimerase [Thermobifida fusca YX] gi|123760867|sp|Q47RR3|DAPF_THEFY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|71914952|gb|AAZ54854.1| diaminopimelate epimerase [Thermobifida fusca YX] Length = 274 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 113/294 (38%), Gaps = 36/294 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N +++ ++ + + AL D ++ + Sbjct: 1 MRFAKGHGTENDFVILPDPDGELDLDAATVAALCDRRAGLGADGVLRVVRTKALDEPLTG 60 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE--TIRGILVAKE 110 + F+ N DGS + CGNG+R R+L + FE T G Sbjct: 61 EAATAQRCEWFMDYRNADGSVAEMCGNGVRVFARYLQEAGLVGAAAFEVGTRAGARHVVL 120 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 DG+I+VDMG + L ++ H +S+GNPH Sbjct: 121 EPDGNITVDMGPVRI------LGPGSARLADGPVH-----------GTRISVGNPHLACR 163 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 V + DL+ L + F +G N+ + R + L++R +ERG T +CG+ Sbjct: 164 VARPVAEVDLS--APPLLRAEEFPQGANVEVFREVASGVLEMRVYERGAAETRSCGTGIV 221 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 A+ A+ + + +V++ GG + ++ ++G A EG + + Sbjct: 222 AAAAAATPPGE-DARWTVRVPGGECTV-VLESGAARLSGPAVIVAEGDVRLSAL 273 >gi|224373792|ref|YP_002608164.1| diaminopimelate epimerase [Nautilia profundicola AmH] gi|223589860|gb|ACM93596.1| diaminopimelate epimerase [Nautilia profundicola AmH] Length = 242 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 98/276 (35%), Gaps = 41/276 (14%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 +K GN ++ D + A + D +++I + D + N Sbjct: 4 SKYSASGNDFVIFHAFLKKDR-SEIAKILCDRQNGVGADGLIVILPHEQ--YDFEWQFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSE + CGNG R + + + K F TI G++ A+ Sbjct: 61 ADGSEAEMCGNGSRAAAHYAYVNELAPKKMQFLTIAGVIEAEV----------------- 103 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 D + + + G PH + D+ +++ L Sbjct: 104 ---------DGDIVESQLTEHKIIKEVGEWKLFDTGVPHLVKID--DINSFNIEEARKL- 151 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N+++A V L +RT+ERGV T ACG+ CAS + + V Sbjct: 152 ----RYEHNANVNVAEVKDGN-LYVRTYERGVEDETLACGTGMCASFLFAREQGLVGNEV 206 Query: 247 SVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +V G L I+ NN ++ G+ K + ++ Sbjct: 207 TVYPKSGEELHIKLK-NNRLYFKGKVKNTFITTFNV 241 >gi|117928690|ref|YP_873241.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B] gi|189082856|sp|A0LUZ5|DAPF_ACIC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|117649153|gb|ABK53255.1| diaminopimelate epimerase [Acidothermus cellulolyticus 11B] Length = 303 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 107/317 (33%), Gaps = 58/317 (18%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 V F K N +++ + + + A+ D I+ + Sbjct: 4 VPFLKGHATRNDFVILPDHDDELELDAALVRAICDRRRGLGADGILRVVAVPADDAPVSS 63 Query: 53 ------------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR 94 Q A+ F+ N DGS + CGNG+R R+L Sbjct: 64 AGATADAAAGRPPQPSAGRPPQPAAARWFMDYRNADGSVAEICGNGIRLFARYLVDAGLE 123 Query: 95 KSFTFETIR--GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHL 152 ++ F G + G ++ + P R RF + Sbjct: 124 EAGRFLVGTRIGPVPVDVPPAGDVTAWLPAP-----------ELRGGGRARFDGRMLE-- 170 Query: 153 FLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212 VS+GNPH + V+ D+ + F +G N+ + + L + Sbjct: 171 ----GVRVSVGNPHLVCVVD---TLADVDFTRAPVLDSDEFPDGANVEVVEIERPGVLRM 223 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMT 268 R +ERGVG T +CGS ACA + + R + + GG L I + + V + Sbjct: 224 RVYERGVGETWSCGSGACAVAAVAEGAERIPRPADGWWRIVVPGGELRIRFDGD-RVALA 282 Query: 269 GEAKKEWEGKLDIKTGK 285 G A EG+L + + Sbjct: 283 GPAVVVAEGRLHLAALE 299 >gi|296454515|ref|YP_003661658.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JDM301] gi|296183946|gb|ADH00828.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. longum JDM301] Length = 297 Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + ++D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPSADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 F+ N DGS + CGNG R + F + F T G+ + Sbjct: 68 DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + + + D + + V MGNPH + Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGAEGSARGTFVDMGNPHVVAV 180 Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESL------DLRTWERGVGL 221 +ED + P+ N+ RV ++ +R ERG G Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ CA+ V + + GG L ++ D++ V +TG A + L Sbjct: 241 TLSCGTGLCATGVVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296 >gi|315637930|ref|ZP_07893116.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21] gi|315481965|gb|EFU72583.1| diaminopimelate epimerase [Campylobacter upsaliensis JV21] Length = 249 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 92/273 (33%), Gaps = 32/273 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + G N + A + + D +++I + D Sbjct: 1 MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F F + G++ A + G Sbjct: 58 FYNKDGSRAAMCGNGSRAAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSGV--------- 108 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + L + D + F + G PH + F E ++ F Sbjct: 109 ----EVVLGEARDVKEPFEFEGRVWQY--------CDTGVPHLVHFCE------NIEEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + N++ A++ + + +RT+ERGV T ACG+ A + K Sbjct: 151 KKTCQILRKKYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAYLQKKLK 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V + G L + ++ G+ K +E Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243 >gi|167860678|gb|ACA05121.1| diaminopimelate epimerase [Flammeovirga yaeyamensis] Length = 205 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 92/233 (39%), Gaps = 33/233 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA--LSTDDNTHFDQIMLIHDFQDASVDA 62 M+ F K +G GN ++ID R +I A D ++LI D Sbjct: 1 MIHFWKYQGAGNDFIMIDDRDATFDINDHEKVAFLCHRRFGVGGDGLILIRL--KEGYDF 58 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMG 121 + N DG CGNG RC VRF + + T F G A + + + M Sbjct: 59 EMVYFNADGHVGTMCGNGGRCAVRFAHTLGLFDTTTSFWAADGAHEATLDEQQLVHLKMN 118 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P + + + G+PH + F + DL ++D Sbjct: 119 PPG-------------------------EIEINADHYFMDTGSPHYVRFEK-DLDNFDCV 152 Query: 182 SFGNLLAKHPMF-SEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACAS 232 + G + + F EG N++ A+VT +SL +RT+ERGV T ACG+ A Sbjct: 153 TEGKAIRYNERFAKEGTNVNFAQVTGSQSLSVRTYERGVEDETYACGTGVTAC 205 >gi|119964081|ref|YP_947364.1| diaminopimelate epimerase [Arthrobacter aurescens TC1] gi|119950940|gb|ABM09851.1| diaminopimelate epimerase [Arthrobacter aurescens TC1] Length = 322 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 102/310 (32%), Gaps = 51/310 (16%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF--------- 55 + F+K G GN ++I G +T++ + L D ++ Sbjct: 27 LTFSKGHGTGNDFVLIADPGDAHEVTAEQVAQLCDRHVGIGGDGLIRAVPSRFLPEGRVA 86 Query: 56 --QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR-----MKRKSFTFETIRGILVA 108 QD + F+ N DGS + CGNG+R V FL + ++ T T G+ Sbjct: 87 LEQDPQAEWFMDYRNGDGSLSEMCGNGVRVFVHFLIAEGLVDLGPGQTLTIGTRGGVKKV 146 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 +G L + +++ D + R VSMGNPH + Sbjct: 147 VRTVNGYAVDMGPWEFLFPEE-ATSKAMDALVSAE------GLEVPRPGLSVSMGNPHTV 199 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + +L P + G N+ ++ +R ERGVG T Sbjct: 200 VAL-AELSELSATQLFKAPVVDPKPANGTNVEFVVPAEPLVEDGVGTITMRVHERGVGET 258 Query: 223 AACGSAACASVVASGCLHKTNRAVSVK------------MLG-GGLLIEWHDNNHVFMTG 269 +CG+ ACA+ VA G G HV ++G Sbjct: 259 QSCGTGACAAAVAIRHWAGDTAPNDWHVKVPGGVVGVKFFPGAG-------GREHVELSG 311 Query: 270 EAKKEWEGKL 279 A G L Sbjct: 312 PAVIVATGTL 321 >gi|237785689|ref|YP_002906394.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM 44385] gi|237758601|gb|ACR17851.1| Diaminopimelate epimerase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 102/317 (32%), Gaps = 50/317 (15%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------- 52 M F+K G N +++ ++ + LS D ++ I Sbjct: 1 MPEQTTPFSKGHGTENDFILLPDFDADIDLDPALVRVLSDRRAGLGADGVIRIARTEALI 60 Query: 53 --------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRK 95 + + + F+ N DGS + CGNG R +L + Sbjct: 61 DKGIIAREAVGESGDGAPENTPEWFMDYRNADGSIAEMCGNGSRVFGHYLFAHNLVSDSP 120 Query: 96 SFTFETIRGILVAKENRDGSISVDMGEPILDWKLI-PLARSFDKMDRDRFHIGPVNHLFL 154 F+ T GI + +D + + +S DR RF Sbjct: 121 KFSIGTRAGIKRLTVVNPAQTTDSSARIAVDMGQVGIIGQSVAAFDRQRF---------- 170 Query: 155 RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK---HPMFSEGVNLSIARVT------ 205 + +GNPH V DL L L F G N+ + Sbjct: 171 -AGVGIDVGNPHL-ACVIPDLDDAGLRELPLHLKPVLDEEFFPHGANVEVLTPLRADDSR 228 Query: 206 -SLESLDLRTWERGVGLTAACGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNN 263 ++ +R ERG G T +CG+ A+ VA+ + + V V + GG + + + Sbjct: 229 DGDGTVSMRVHERGSGETRSCGTGTVAAAVAALADRGQVDGTVHVVVPGGEVTVTIK-DE 287 Query: 264 HVFMTGEAKKEWEGKLD 280 + G + G ++ Sbjct: 288 QATLEGPSVIVASGTIN 304 >gi|325002638|ref|ZP_08123750.1| diaminopimelate epimerase [Pseudonocardia sp. P1] Length = 290 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 99/298 (33%), Gaps = 43/298 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI-----------H 53 ++F K G N +V+ ++T + + AL D ++ + Sbjct: 5 IEFTKGHGTRNDFVVLPDPDAALDLTPERVAALCDRHGGIGADGVLRVVRWAKLAGDESV 64 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK-RKSFTFETIRGILVAKENR 112 V+ F+ N DGS + CGNG+R R+L R T G+ A Sbjct: 65 PEPVPGVEWFMDYRNADGSVAEMCGNGVRVFARYLHERGWAPGGGPVGTRAGVRTATL-S 123 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 ++SVDMG + + + + +GNPH Sbjct: 124 GDTVSVDMGPVAIGPASVATTGGARF-----------------DGIALDVGNPHLACVTA 166 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT----SLESLDLRTWERGVGLTAACGSA 228 D DL + +F GVN+ + +R ERGVG T ACG+ Sbjct: 167 TDPDALDLTGAPAVD--PEVFPRGVNVEFVTPLDGPADGGRVRMRVHERGVGETLACGTG 224 Query: 229 A-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-----FMTGEAKKEWEGKLD 280 A V A V V GG L + + + G A G++D Sbjct: 225 TVAAVVAALRAAGHPAGDVHVDTPGGRLRVTVGAGDDAATGTTVLHGPAVLLATGEID 282 >gi|227546822|ref|ZP_03976871.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322691548|ref|YP_004221118.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM 1217] gi|227212784|gb|EEI80665.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|320456404|dbj|BAJ67026.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum JCM 1217] Length = 297 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 F+ N DGS + CGNG R + F + F T G+ + Sbjct: 68 DVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + + + D + + V MGNPH + Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180 Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGL 221 +ED + P+ N+ RV ++ +R ERG G Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ CA+ + + + GG L ++ D++ V +TG A + L Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296 >gi|227515203|ref|ZP_03945252.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931] gi|227086535|gb|EEI21847.1| diaminopimelate epimerase [Lactobacillus fermentum ATCC 14931] Length = 335 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 128/312 (41%), Gaps = 28/312 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 M K+ G N+ ++D ++ + A D +++++D + Sbjct: 1 MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + +R+IN DGSE CGNG+R V R+L + + F ET + A Sbjct: 61 PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVET----MKADLTVAYHDD 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFF- 170 G P ++ P+ A FD++ +R + +++ NPH I F Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++L L G ++P F++GVN++ A + L +RT+ERGVG T ACG+ Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNINFAHILGPNELFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H ++V GG + H ++ + + G A + ++++ Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294 Query: 283 TGKWIKKNEDDE 294 D Sbjct: 295 EAALHDAQVTDA 306 >gi|184155328|ref|YP_001843668.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956] gi|260662159|ref|ZP_05863055.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN] gi|183226672|dbj|BAG27188.1| diaminopimelate epimerase [Lactobacillus fermentum IFO 3956] gi|260553542|gb|EEX26434.1| diaminopimelate epimerase [Lactobacillus fermentum 28-3-CHN] Length = 335 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 128/312 (41%), Gaps = 28/312 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINA-----LSTDDNT--HFDQIMLIHDFQD 57 M K+ G N+ ++D ++ + A D +++++D + Sbjct: 1 MAQLLKVHGSQNQFFLLDQTTLARPLSDPELRALGLQLCDPATGILGGADGLLVVNDSNN 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + +R+IN DGSE CGNG+R V R+L + + F ET + A Sbjct: 61 PAASGQMRVINADGSEASMCGNGLRTVARYLAEKTNQTRFQVET----MKADLTVAYHDD 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDR-FHIGPVNHLFLRNPFVVSMGNPHAIFF- 170 G P ++ P+ A FD++ +R + +++ NPH I F Sbjct: 117 FFPGVPGYAVEISPVRFNKEALPFDQVGHERLLDTLVPEFVPGWRFSALAVPNPHLIAFV 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++L L G ++P F++GVN++ A + L +RT+ERGVG T ACG+ Sbjct: 177 SDEELAGPVLGELGQRLNGENPYFADGVNVNFAHILGPNELFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H ++V GG + H ++ + + G A + ++++ Sbjct: 237 SATTLAFALTHPDQAGFETPITVYNPGGMVKTILHHHDARYTIDLIGNAT--FTHQIEVH 294 Query: 283 TGKWIKKNEDDE 294 D Sbjct: 295 EAALHDAQVTDA 306 >gi|42521693|ref|NP_967073.1| hypothetical protein Bd0045 [Bdellovibrio bacteriovorus HD100] gi|39574223|emb|CAE77727.1| dapF [Bdellovibrio bacteriovorus HD100] Length = 285 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 105/291 (36%), Gaps = 35/291 (12%) Query: 9 AKMEGIGNKILVIDMR--------GCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDA 58 KM G GN +ID R +T L D D +LI D Sbjct: 10 TKMSGAGNTFSLIDARKGSAWADLEKTLGLTRPQFAKLVCDRVLGLSTDGFLLIEDG-SE 68 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILVAKENRDGS 115 D N DGS + CGN RC RF ++ K F+T G++VA+ + Sbjct: 69 GFDFHWDFYNNDGSTAEMCGNAARCAARFCYDTLEAKGTGVLRFKTGAGLVVAQILGNSR 128 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I V M E +LI L +V+ G PH + + Sbjct: 129 IRVKMPEARFIQELIELKTK---------------SSSTEKFALVNTGVPHLVQKIHAFS 173 Query: 176 YHYDLASFGNLLA-KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASV 233 L H + G N++ S + T+ERGV T ACG+ A A+ Sbjct: 174 DTVALKDMAREARSHHDLQPAGANVTFYAEESAGKIRAVTFERGVEDYTLACGTGAVAAA 233 Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEW-HDNNHVFMTGEAKKE--WEGKLDI 281 K +V V+M GG + + + + H M G+A ++ L++ Sbjct: 234 FVHNKETK-ESSVEVQMPGGSMQVTFVSGDPHPLMEGDAVFVGDFKYNLEV 283 >gi|268319543|ref|YP_003293199.1| hypothetical protein FI9785_1066 [Lactobacillus johnsonii FI9785] gi|262397918|emb|CAX66932.1| dapF [Lactobacillus johnsonii FI9785] Length = 333 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 31/320 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS----DAINALSTDD-NT--HFDQIMLIHDFQD 57 M K+ G N ++D +T + ++ D ++ I+ Sbjct: 1 MSTLYKVHGSQNHFFILDQTELSTPLTDTELVEFTKKITNPSSGILNGADGVLAINSPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 A +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L +++ + Sbjct: 61 PQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDNLAKE 120 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +V++ + +P D++ L +++ NPH I F++ Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGL---RFTSIAVPNPHLISFMD 177 Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + L G +P F +GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 178 QNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMS 237 Query: 231 ASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL---D 280 A+ +A N+++ V GG + H NH + + G A + ++ D Sbjct: 238 ATSLAFCLTYPEKGIFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNATFTDQIEISEAD 297 Query: 281 IKTGKW----IKKNEDDEAY 296 + + I E++ Y Sbjct: 298 LHNCDFSSINITSTEEESDY 317 >gi|295111748|emb|CBL28498.1| diaminopimelate epimerase [Synergistetes bacterium SGP1] Length = 284 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 70/286 (24%), Positives = 113/286 (39%), Gaps = 32/286 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD---DNTHFDQIMLIHDFQDASVD 61 M+D KM G GN LV+D + ++ A A + ++ D ++ + + A+ Sbjct: 1 MIDCLKMNGNGNDFLVVDNLSLAMDASALARAARAVCRRRESVGADGLLALEPSERAA-- 58 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-KSFTFETIRGILVAKENRDGSISVDM 120 +R+ N DGSE + CGNG RC RF R + TFET G + A Sbjct: 59 FRMRLFNRDGSEGEMCGNGARCAARFAFDRGIVGREMTFETRGGDVHAVVRG-------- 110 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF---VEDDLYH 177 + L + + +G PHA+ F + Sbjct: 111 -------NRVALDLAPVSTGSAVLKAHASVEGCDFTYAFLVVGVPHAVIFERERRRSIAE 163 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIA--RVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 Y + L ++ +F G N++ A +LD+ T+ERGV +T +CG+ + AS + Sbjct: 164 YAVLG-RALRSRQDLFPVGANVNFALLSSEDSGTLDVVTYERGVEDVTLSCGTGSAASAI 222 Query: 235 ASGCLHKTNRAVSVKMLGG--GLLIEWHDNNHV--FMTGEAKKEWE 276 A L V V GG + + W + + V + G A E Sbjct: 223 AGRLLGVVGDEVRVVNPGGVNDVSLTWIETDVVQPRLEGGALMIAE 268 >gi|118618688|ref|YP_907020.1| diaminopimelate epimerase [Mycobacterium ulcerans Agy99] gi|166225737|sp|A0PT80|DAPF_MYCUA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118570798|gb|ABL05549.1| diaminopimelate epimerase DapF [Mycobacterium ulcerans Agy99] Length = 290 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 34/304 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------L 51 M+ FAK G N +++ ++T+ + AL D I+ + Sbjct: 1 MI-FAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGV 59 Query: 52 IHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 +H D + D ++ N DGS Q CGNG+R +L + ET +V Sbjct: 60 LHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASG------LETRDEFVVGS 113 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 ++V + + + ++ + G + V +GNPH Sbjct: 114 LAGPRPVTVHHADQTHADVTVDMGKANKLGPGEAVVGGRR-----LSGVAVDVGNPHLAC 168 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L + H F EGVN+ + + + +R ERGVG T +CG+ Sbjct: 169 LDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTARAAGVVCMRVHERGVGETRSCGT 228 Query: 228 AA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+V A + ++V++ GG + + D + + G + G++ + +W Sbjct: 229 GTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI---SEEW 284 Query: 287 IKKN 290 + Sbjct: 285 WRDQ 288 >gi|300812862|ref|ZP_07093257.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496198|gb|EFK31325.1| diaminopimelate epimerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 328 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 35/323 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 M K+ G N ++D + +T + + L D I+ + + Sbjct: 1 MNKLLKVHGSQNSFFILDQTELENPLTDNELRQLTQTLTDHKTGLLGGADGILSVEEASH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 V +R+IN DGSE CGNG+R V R+L + F ET + A + Sbjct: 61 PGVLGKMRVINADGSEASMCGNGLRTVARYLHEKTGESQFKVET----MYADLAVRQADD 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAI-FF 170 G P ++ P+ + FD + +R V L F +++ NPH I F Sbjct: 117 FAEGVPAFGVEISPVRFNKESLPFDNLGHNRLLDTLVPELVPGWRFSALAVPNPHLIAFI 176 Query: 171 VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E+DL L G ++P FS+GVN++ + L +RT+ERGVG T ACG+ Sbjct: 177 KEEDLESPVLGELGAYLNGENPYFSDGVNINYTVIRGDSQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKL--- 279 AS +A L + +SV GG + H +H + + G A + ++ Sbjct: 237 SASSLAFALTHPDLGHFEKEISVYNPGGMVKTVLHQKDHGYWIELIGNATETHTIEIPED 296 Query: 280 DIKTGKWI------KKNEDDEAY 296 + +G+ K+ + AY Sbjct: 297 QLHSGQVKLEAVKTKETGEQAAY 319 >gi|213691664|ref|YP_002322250.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523125|gb|ACJ51872.1| Diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 297 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 94/298 (31%), Gaps = 36/298 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 F+ N DGS + CGNG R + F + F T G+ + Sbjct: 68 AVLAGGAKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + I + + + D + + V MGNPH + Sbjct: 128 RSNTKPYGANVF------QIEM-GEWKVGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180 Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGL 221 +ED + P+ N+ + T + +R ERG G Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVNERGCGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ CA+ + + + GG L ++ D++ V +TG A + L Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296 >gi|189438968|ref|YP_001954049.1| diaminopimelate epimerase [Bifidobacterium longum DJO10A] gi|239620800|ref|ZP_04663831.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|317481619|ref|ZP_07940655.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA] gi|322689587|ref|YP_004209321.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis 157F] gi|189427403|gb|ACD97551.1| Diaminopimelate epimerase [Bifidobacterium longum DJO10A] gi|239516376|gb|EEQ56243.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516157|emb|CBK69773.1| diaminopimelate epimerase [Bifidobacterium longum subsp. longum F8] gi|316916979|gb|EFV38365.1| diaminopimelate epimerase [Bifidobacterium sp. 12_1_47BFAA] gi|320460923|dbj|BAJ71543.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis 157F] Length = 297 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 F+ N DGS + CGNG R + F + F T G+ + Sbjct: 68 DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + + + D + + V MGNPH + Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180 Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLESL------DLRTWERGVGL 221 +ED + P+ N+ RV ++ +R ERG G Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ CA+ + + + GG L ++ D++ V +TG A + L Sbjct: 241 TLSCGTGLCATGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296 >gi|332670093|ref|YP_004453101.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484] gi|332339131|gb|AEE45714.1| diaminopimelate epimerase [Cellulomonas fimi ATCC 484] Length = 330 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 102/304 (33%), Gaps = 31/304 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----------Q 56 K G N +++D R ++T + L+ D ++ + Sbjct: 23 TKGHGTQNDFVLLDDRDGLLDLTPALVRELADRRAGLGGDGVIRLVRSAHLPEGAALLAD 82 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R V F + E + G A R + Sbjct: 83 VPDATWFMDYRNADGSVAEMCGNGVRVVAAFAERLGLWDASDGELVLG-TRAGVRRVRRV 141 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV------NHLFLRNPFVVSMGNPHAIFF 170 V G P W + + R + D G +R V +GNPH + Sbjct: 142 PVPDGLPDAVWYAVDMGRWYLPGGEDAVRDGFDAQVAVAGLADVRPALGVDVGNPHTVLA 201 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL---------ESLDLRTWERGVGL 221 + D A P+ G N+ + + +R ERGVG Sbjct: 202 LPG-PEELDAADLTRAPEVRPVPPHGTNVELVVPLGETPGPDGALVGRVAMRVHERGVGE 260 Query: 222 TAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ ACA+ +A V + GG + + + HV + G A + Sbjct: 261 TRSCGTGACAAALAVRTWAGAGAPDVWLVDVPGGTVRVTALSDGHVELAGPAVLVATATV 320 Query: 280 DIKT 283 D+ Sbjct: 321 DLAA 324 >gi|254674295|emb|CBA10079.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275] Length = 172 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDA 62 + + F KM G+GN +VID I A + FDQ++++ + VD Sbjct: 2 NTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVGFDQLLVVGRSETEGVDF 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDM 120 RI N DGSEV CGNG RC RF+ + +K ET G++ K + +G ++V+M Sbjct: 62 RYRIFNADGSEVGQCGNGARCFARFVADKGLTDKKEICVETANGVIFPKLSDNGMVTVNM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 G+P IP + D D G ++ V+MGNP Sbjct: 122 GKPKFMPSEIPFVPESGEGD-DACIYGVHLESGIQPVSCVNMGNPPC 167 >gi|329667406|gb|AEB93354.1| Diaminopimelate epimerase [Lactobacillus johnsonii DPC 6026] Length = 333 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 26/302 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS----DAINALSTDD-NT--HFDQIMLIHDFQD 57 M K+ G N ++D +T+ + ++ D ++ I+ Sbjct: 1 MSTLYKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 A +R+IN DGSE CGNG+R V R+L+ + + +F +T+ L +++ + Sbjct: 61 PQALAQMRVINADGSEASMCGNGLRTVARYLSEKYNQDNFLVDTMNANLRVRKHDNLAKG 120 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +V++ + +P D++ L +++ NPH I F++ Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGL---RFTSIAVPNPHLISFMD 177 Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + L G +P F +GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 178 QNQIESNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMS 237 Query: 231 ASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIKT 283 A+ +A N++++V GG + H NH + + G A + +++I Sbjct: 238 ATSLAFCLTYPEKGFFNQSINVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISE 295 Query: 284 GK 285 Sbjct: 296 AD 297 >gi|308180983|ref|YP_003925111.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046474|gb|ADN99017.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 332 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 118/296 (39%), Gaps = 25/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + D D ++++ Sbjct: 1 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 58 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117 Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D + V + L + + V++ N H I Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNQHLIA 177 Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV+ D L +L G + +F +GVN+S V S+ +RT+ERGVG T ACG Sbjct: 178 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 237 Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274 +A AS + LH+ N+ + V GG + H + +M G A Sbjct: 238 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293 >gi|254556996|ref|YP_003063413.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1] gi|254045923|gb|ACT62716.1| diaminopimelate epimerase [Lactobacillus plantarum JDM1] Length = 332 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 25/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + D D ++++ Sbjct: 1 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 58 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117 Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D + V + L + + V++ NPH I Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNPHLIA 177 Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV+ D L +L G + +F +GVN+S V S+ +RT+ERGVG T ACG Sbjct: 178 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 237 Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274 +A AS + LH+ N+ + V GG + H + +M G A Sbjct: 238 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293 >gi|229490774|ref|ZP_04384609.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] gi|229322164|gb|EEN87950.1| diaminopimelate epimerase [Rhodococcus erythropolis SK121] Length = 289 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 102/302 (33%), Gaps = 33/302 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 +DF+K G N +V+ ++ ++AL D I+ + Sbjct: 1 MDFSKGHGTQNDFVVLPDLDVRIDLEPARVSALCDRQRGLGADGILRVARAGALADAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 A+ D F+ N DGS + CGNG+R +L + + F + G Sbjct: 61 GALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGARPV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + D+ + K + + + +F V + + Sbjct: 121 VVHGYDATHGDVTVAMGTIKDLGTSSA-----------TIDGRVFAGVGIDVGNPHLACV 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L + F GVN+ I + +R ERGVG T +CG+ Sbjct: 170 DEHVTPEVLSSLDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCGTG 229 Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ A+ + +V V++LGG + + + + G + G + + W Sbjct: 230 TVAAAAAALRYDGRDEGSVLVRVLGGEVQVTV-EGGKGSLRGPSVLVASGTI---SDAWW 285 Query: 288 KK 289 + Sbjct: 286 QS 287 >gi|300768834|ref|ZP_07078728.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493567|gb|EFK28741.1| diaminopimelate epimerase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 334 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 25/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + D D ++++ Sbjct: 3 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 59 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 60 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 119 Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D + V + L + + V++ NPH I Sbjct: 120 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNPHLIA 179 Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV+ D L +L G + +F +GVN+S V S+ +RT+ERGVG T ACG Sbjct: 180 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 239 Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274 +A AS + LH+ N+ + V GG + H + +M G A Sbjct: 240 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 295 >gi|183982001|ref|YP_001850292.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] gi|229813234|sp|B2HL16|DAPF_MYCMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|183175327|gb|ACC40437.1| diaminopimelate epimerase DapF [Mycobacterium marinum M] Length = 290 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 34/304 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIM------------L 51 M+ FAK G N +++ ++T+ + AL D I+ + Sbjct: 1 MI-FAKGHGTQNDFVLLPDVAARLSLTAAQVAALCDRRRGLGADGILRVTTADAAVAAGV 59 Query: 52 IHDFQD--ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 +H D + D ++ N DGS Q CGNG+R +L + ET +V Sbjct: 60 LHRLPDGVSPGDWYMDYRNADGSTAQMCGNGVRVFAHYLRASG------LETRDEFVVGS 113 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 ++V + + + ++ + G + V +GNPH Sbjct: 114 LAGPRPVTVHHADQTHADVTVDMGKANKLGPGEAVVGGRR-----LSGVAVDVGNPHLAC 168 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L + H F EGVN+ + + + +R ERGVG T +CG+ Sbjct: 169 LDPGLTPEQLAALDVGAPVSFDHAQFPEGVNVEVLTAPAAGVVCMRVHERGVGETRSCGT 228 Query: 228 AA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+V A + ++V++ GG + + D + + G + G++ + +W Sbjct: 229 GTVAAAVAALASAGQETGTLTVRIPGGDVTVNITDATSL-LRGPSVLVASGEI---SEEW 284 Query: 287 IKKN 290 + Sbjct: 285 WRDQ 288 >gi|28378791|ref|NP_785683.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1] gi|32171430|sp|Q88V90|DAPF_LACPL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|28271628|emb|CAD64534.1| diaminopimelate epimerase [Lactobacillus plantarum WCFS1] Length = 332 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 25/296 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNIT----SDAINALSTDDNTH----FDQIMLI 52 M M+ K+ G GN ++D ++ + D D ++++ Sbjct: 1 MAVKMI---KVHGSGNDFYLLDQTQFQAPLSDADLKQLAINICKRDGAGLYDGADGVLVV 57 Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENR 112 + V +R+IN DG+E CGNG+R V R+L ++ ++ F +T+ L + Sbjct: 58 DKSEHPQVLGRMRVINADGTEASMCGNGLRTVARYLGTQNSQEDFRVQTMYADLKVQAVA 117 Query: 113 DGSISVDMGEPILDW---KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D + V + L + + V++ NPH I Sbjct: 118 DFAAHVPAYSVEISPVTFDAQTLGMHANNDATTIINEKIPALSADLKFSAVAVPNPHLIA 177 Query: 170 FVEDD-LYHYDLASFGNLLAKHP--MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 FV+ D L +L G + +F +GVN+S V S+ +RT+ERGVG T ACG Sbjct: 178 FVDHDTLVGPELGRIGEWMNDGKNQIFPDGVNVSFVEVLGPNSIFVRTFERGVGFTNACG 237 Query: 227 SAACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKE 274 +A AS + LH+ N+ + V GG + H + +M G A Sbjct: 238 TAMSASSLMYVLLHQESTDFNQEIHVTNPGGMVKTVVHQGADEEYWMELIGNATFV 293 >gi|312132408|ref|YP_003999747.1| dapf [Bifidobacterium longum subsp. longum BBMN68] gi|311772769|gb|ADQ02257.1| DapF [Bifidobacterium longum subsp. longum BBMN68] Length = 297 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 93/298 (31%), Gaps = 36/298 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ----------- 56 K GN +V + T+D + L D ++ + Sbjct: 8 TKTHATGNDFVVYLDKSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLS 67 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 F+ N DGS + CGNG R + F + F T G+ + Sbjct: 68 DVLAGGTKWFMDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTP 127 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + + + D + + V MGNPH + Sbjct: 128 RGNMRPYGANVFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAV 180 Query: 171 VEDDLYHYDLAS---FGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGL 221 +ED + P+ N+ RV ++ +R ERG G Sbjct: 181 IEDAFASLPVVESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGE 240 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ CA+ + + + GG L ++ D++ V +TG A + L Sbjct: 241 TLSCGTGLCATGIVLQAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 296 >gi|229817187|ref|ZP_04447469.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM 20098] gi|229784976|gb|EEP21090.1| hypothetical protein BIFANG_02446 [Bifidobacterium angulatum DSM 20098] Length = 304 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 97/295 (32%), Gaps = 31/295 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD---------- 57 K GN +V T+D + L D ++ + +D Sbjct: 16 TKTHATGNDFVVYADPEGRFEPTADEVRHLDDRHFGIGGDGVIRLAHPEDVSDLTAEQIA 75 Query: 58 ----ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + F+ N DGS Q CGNG R + F R K F V Sbjct: 76 ECREDGAEWFMDYRNADGSLAQMCGNGTRAITLFAYDRGYAKGDAFHLGTRAGVKVLTSL 135 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI---FF 170 GS+ ++ + + D F + V MGNPH + Sbjct: 136 GSVEGLGRNVFRV-----DMGAWKRGEVDAFEVTIPGTAGSARGTYVDMGNPHVVAVIED 190 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIAR------VTSLESLDLRTWERGVGLTAA 224 + L + P+ N+ R +L + +R ERG G T + Sbjct: 191 GKATLPAVEDLDLVTKPVVSPVLESDQNVEFVRIDTRDADHNLGTATMRVNERGCGETLS 250 Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ CA+ V + ++ + GG L I+ D + V +TG+A + L Sbjct: 251 CGTGLCATAVTLRAKTGID-HWTIAVRGGVLRIDVSDTD-VKLTGDATLVGDITL 303 >gi|209514903|ref|ZP_03263772.1| Diaminopimelate epimerase [Burkholderia sp. H160] gi|209504529|gb|EEA04516.1| Diaminopimelate epimerase [Burkholderia sp. H160] Length = 186 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 11/196 (5%) Query: 87 FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 L + + + T RG+L + D ++SVDMG+P+L+W+ IPL D Sbjct: 1 MLMREINKPTVVLRTNRGLLTCTRDADQNVSVDMGKPLLNWQDIPLTGEMDTTAL----- 55 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 NP SMGNPH FFVE DL D+A+ G ++ +P+F N+ +V Sbjct: 56 -----PISGNPTACSMGNPHCTFFVE-DLASVDVAAIGPMIEANPLFRNRTNVHFVQVID 109 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF 266 + LR WERG G+ GS C +VV + V V+ GG + ++W VF Sbjct: 110 RGRIRLRIWERGGGIPLGSGSCCCGAVVGGIRRGLLDDTVEVQCDGGAVKVQWDGIGGVF 169 Query: 267 MTGEAKKEWEGKLDIK 282 +TG K + GK+ I+ Sbjct: 170 LTGSVKTVFSGKIAIQ 185 >gi|57505555|ref|ZP_00371482.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195] gi|57016102|gb|EAL52889.1| diaminopimelate epimerase [Campylobacter upsaliensis RM3195] Length = 249 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 32/273 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + G N + A + + D +++I + D Sbjct: 1 MKFFKYCASGNDFVIFNA-GKKANRSELARILCNRYEGVGADGMIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F F + G++ A + G Sbjct: 58 FYNKDGSRAAMCGNGSRVAAHFAYYVNGVNSKMCFLSEAGVIEASVKKSG---------- 107 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + + ++ F G + G PH + F E ++ F Sbjct: 108 -----VEVVLGEARDVKEPFEFGGRVWQY------CDTGVPHLVHFCE------NIEEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + N++ A++ + + +RT+ERGV T ACG+ A + K Sbjct: 151 KKTCQVLRKKYNANVNFAQIIDDKLIKVRTFERGVEDETLACGTGMAACFYLAFLQKKLK 210 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 V + G L + ++ G+ K +E Sbjct: 211 DKVKIVPKSGEQLGFSLKDKKIYFKGKVKCCFE 243 >gi|152993982|ref|YP_001359703.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1] gi|151425843|dbj|BAF73346.1| diaminopimelate epimerase [Sulfurovum sp. NBC37-1] Length = 248 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 92/270 (34%), Gaps = 34/270 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K GN ++ + H + + A + D ++++ + D N Sbjct: 4 TKYSANGNDFVIF-IAQEHADRSELAKKLCHRQNGVGADGMVVVLPHKK--YDFEWEFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEPILDW 127 DGSE CGN R V F + K E + G V + +G + DM EP + Sbjct: 61 SDGSEADMCGNASRAVAHFAHEKGISKDGKAEFLTGAGVIRATINGLYVVSDMVEPDIQR 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 I +++ G PH + E ++ +DL L Sbjct: 121 DDI--------------------DENGERWWLIDSGVPHLVAIQE-NIDSFDLTEARRLR 159 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 K+ ++L +RT+ERGV T ACG+ A + K V Sbjct: 160 EKYNANVNIC------RLDGDTLYVRTYERGVEDETLACGTGMVACYIRLHKEGKVPDQV 213 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEW 275 V G L + + +N G+ K + Sbjct: 214 KVHPKSGDELYVSY-ENGVYRFGGKVTKTF 242 >gi|227889924|ref|ZP_04007729.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200] gi|227849368|gb|EEJ59454.1| diaminopimelate epimerase [Lactobacillus johnsonii ATCC 33200] Length = 333 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 128/302 (42%), Gaps = 26/302 (8%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITS----DAINALSTDD-NT--HFDQIMLIHDFQD 57 M K+ G N ++D +T+ + ++ D ++ I+ Sbjct: 1 MSTLYKVHGSQNHFFILDQTELSTPLTNTELVEFTKKITNPSSGILNGADGVLAINSPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 A +R+IN DGSE CGNG+R V R+L + + +F +T+ L +++ + Sbjct: 61 PQALAQMRVINADGSEASMCGNGLRTVARYLFEKYNQDNFLVDTMNANLRVRKHDNLAKG 120 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + +V++ + +P D++ L +++ NPH I F++ Sbjct: 121 VKAFAVEISPVSFNKSSLPFQNLGYNRIIDQYLPEIYPGL---RFTSIAVPNPHLISFMD 177 Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + L G +P F +GVN++ A++ L +RT+ERGVG T ACG+ Sbjct: 178 QNQIKSNILKEVGEYLNGDNPYFPDGVNVNFAQIIDKNKLFVRTYERGVGFTNACGTGMS 237 Query: 231 ASVVASGC----LHKTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLDIKT 283 A+ +A N+++ V GG + H NH + + G A + +++I Sbjct: 238 ATSLAFCLTYPEKGFFNQSIDVYNPGGKVQTIVHHENHTYWIELIGNAT--FTDQIEISE 295 Query: 284 GK 285 Sbjct: 296 AD 297 >gi|227522831|ref|ZP_03952880.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290] gi|227090032|gb|EEI25344.1| diaminopimelate epimerase [Lactobacillus hilgardii ATCC 8290] Length = 329 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 28/301 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N+ ++D + + + AL D +++I Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + SF ET+ L Sbjct: 61 DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETS---- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + G P ++ P+ + + + D +++ NPH I FV Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ + D+ L +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H +SV GG + HD++ H+ + G A + K++I Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294 Query: 283 T 283 Sbjct: 295 E 295 >gi|268678714|ref|YP_003303145.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946] gi|268616745|gb|ACZ11110.1| diaminopimelate epimerase [Sulfurospirillum deleyianum DSM 6946] Length = 247 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 60/277 (21%), Positives = 104/277 (37%), Gaps = 33/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + AK GN ++ D + A D ++++ D + Sbjct: 1 MQIAKYNASGNDFVIFHTFHETDR-SQLAQVLCHRQKGVGADGLIVLLPH--GEYDFKWQ 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSE CGNG R + ++ K F T G ++A E + + ++ P Sbjct: 58 FYNSDGSEASMCGNGTRACAHYAYTQGLAPKKMCFLTGAG-VIASEVIECVVETELTTPK 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + L+ SF++ G PH + FVED +A F Sbjct: 117 V------LSESFEENGL--------------TWHFCDTGVPHLVTFVED------VALFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +A+ + N++ A + +L +RT+ERGV T ACG+ A ++ + Sbjct: 151 KTIARQMRYKYNANVNYA-MLKENTLHVRTYERGVEDETLACGTGMAACFYSAYRQKRVG 209 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V G L ++ +F GE +K +E + Sbjct: 210 ESAKVYPTSGEELFMRIEDQTLFFKGEVQKVFETVWE 246 >gi|330902408|gb|EGH33455.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 141 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 3/134 (2%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDN-ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAF 63 ++ F KM G+GN +V+D+ H + + A FDQ++L+ + VD Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFR 61 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMG 121 RI N DGSEV+ CGNG RC RF+ + +K ET GI+ DG ISVDMG Sbjct: 62 YRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKKQIRVETKSGIIELDIRSDGQISVDMG 121 Query: 122 EPILDWKLIPLARS 135 P IP + Sbjct: 122 PPRFVPDEIPFEAA 135 >gi|253580132|ref|ZP_04857399.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848651|gb|EES76614.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 151 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 4/145 (2%) Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 + + + + VSMGNPHAI +++ D+ H D+ G H F + VN Sbjct: 5 EEVINEPLDVNGKIYYITAVSMGNPHAIVYMD-DIDHLDIEKIGPAFENHVAFPDRVNTE 63 Query: 201 IARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT--NRAVSVKMLGGGLLIE 258 V ++ +R WERG G T ACG+ ACA VAS + V+VK+LGG L I Sbjct: 64 FVEVIDEHTVKMRVWERGSGETLACGTGACAVAVASVLNGHVDGDSPVTVKLLGGDLQIF 123 Query: 259 WHDNNH-VFMTGEAKKEWEGKLDIK 282 W+ + V+MTG A ++G++D+ Sbjct: 124 WNRQENLVYMTGPAATVFDGEIDVS 148 >gi|296271766|ref|YP_003654397.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299] gi|296095941|gb|ADG91891.1| diaminopimelate epimerase [Arcobacter nitrofigilis DSM 7299] Length = 245 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 33/276 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + K GN ++ + + DAIN + + D +++I + + D Sbjct: 1 MTYTKYSASGNDFVIF-HTLIKKDYSQDAINLCNRTEGIGADGLIVIVP--NQTADFEWL 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGNG R V + + S + + M +P + Sbjct: 58 FYNSDGSDAAMCGNGTRAVAHYAYNNGLAPSNMKFLTEAGFITSSVDGNIVETQMTKPKI 117 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + F++ +++ G PH I V+D L + + Sbjct: 118 ------IKEEFEQEGL--------------TWYLIDTGVPHLITIVDD------LEKYNH 151 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 L + N++ A++ + +RT+ERGV T ACG+ A + + L + Sbjct: 152 DLCAKMRYEHNANVNFAKIED-GKIFVRTYERGVEGETLACGTGMVACFLRANALGLVDT 210 Query: 245 AVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279 V L + + +F G KK + ++ Sbjct: 211 KAFVYPKSKEELTVSIR-DGELFFKGAVKKVFVAQI 245 >gi|163791310|ref|ZP_02185724.1| diaminopimelate epimerase [Carnobacterium sp. AT7] gi|159873451|gb|EDP67541.1| diaminopimelate epimerase [Carnobacterium sp. AT7] Length = 326 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 116/284 (40%), Gaps = 16/284 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTH----FDQIMLIHDFQDA 58 ++ K+ G N+ ++D +T + + TD D ++L+ + + Sbjct: 3 LELIKVHGSENEFFILDETVLERTLTEAELVSLTKIITDRGNGLLNGADGVLLVGNAKHK 62 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + +R+IN DGSE CGNG+R V R+L+ + + ET+ L K+ + V Sbjct: 63 TTGESMRVINYDGSEASMCGNGLRTVARYLSEKHNQDELLIETMHADLHVKKAEELGKDV 122 Query: 119 DMGEPILDWKLIPLAR-SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + + +A+ F+ D + V++ NPH I FV+ Sbjct: 123 QTFQVEISPVSFNVAKLPFNWKDETFIDQELPELAPGLHFSTVAVPNPHLISFVDHKTIK 182 Query: 178 YDLASFGNLLAK--HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-- 233 L +P F +GVN+S + + +RT+ERGVG T ACG+A AS Sbjct: 183 SSLLKELATYLNGANPYFPDGVNVSFVEELGNQKIFVRTFERGVGFTNACGTAMAASSLM 242 Query: 234 VASGCLHKTNRAVSVKMLGGGLL--IEWHDNNHVFM--TGEAKK 273 + + V GG + + +N + +M G A Sbjct: 243 YVLLKDGRLEEKIQVTNPGGMVQTIVHQKENGNYWMDLIGNATF 286 >gi|121611462|ref|YP_999269.1| diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2] gi|121556102|gb|ABM60251.1| Diaminopimelate epimerase [Verminephrobacter eiseniae EF01-2] Length = 382 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 3/154 (1%) Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 + + +VSMGNPHA+ V+ D+ + G L+A H Sbjct: 229 SADRQMIGDATPETPAHGTTATVWLVIVSMGNPHAVQLVD-DVERAPVPEIGPLIANHAR 287 Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG 252 F++ VN +V + LR +ERG G T ACGS ACA+V A L + V V M G Sbjct: 288 FAQRVNAGFMQVVDRGHVRLRVFERGAGETLACGSGACAAVSAGIRLGLLDSEVQVAMRG 347 Query: 253 GGLLIEWHD--NNHVFMTGEAKKEWEGKLDIKTG 284 G + + W + V MTG A +EG++++ + Sbjct: 348 GLVSVAWSGAATDSVVMTGPATTVFEGQIELPSC 381 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F KM+G GN +V+D +++ L+ DQI+ + A +D Sbjct: 37 IRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQILGVRPAPAADIDFEY 96 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 I N DGSEV CGNG RC+ RF+ + ++ +T G++ + N DG +SVDMG Sbjct: 97 IIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGR 156 Query: 123 PILDWKLIPLARS 135 + +P S Sbjct: 157 AQFEPASLPFDAS 169 >gi|116670025|ref|YP_830958.1| diaminopimelate epimerase [Arthrobacter sp. FB24] gi|116610134|gb|ABK02858.1| diaminopimelate epimerase [Arthrobacter sp. FB24] Length = 314 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 101/308 (32%), Gaps = 47/308 (15%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ-------- 56 + F+K G GN +++ I + + L D ++ + Sbjct: 19 LAFSKGHGTGNDFVLVADPEATWPIAPEQVAELCDRHRGIGGDGLIRAVPSRYLPEGREL 78 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRGILVA 108 + F+ N DGS + CGNG+R V FL ++ + T T G Sbjct: 79 QAVHPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLVAQGLVRLDVGDALTIGTRAGAKTV 138 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG W+ I + + + R VSMGNPH + Sbjct: 139 VRTDDGYAVDMGP-----WEFIFPGEATARAMDSLVTADGLEVP--RPALSVSMGNPHTV 191 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + +L + P + G N+ + ++ +R ERGVG T Sbjct: 192 VAL-AELSELEATQLFKAPHVDPKPANGTNVEFVVPSEPLVHDGVGTITMRVHERGVGET 250 Query: 223 AACGSAACASVVASGCLHKTNRA-----------VSVKMLGGGLLIEWHDNNHVFMTGEA 271 +CG+ ACA+ VA V VK G + HV ++G A Sbjct: 251 QSCGTGACAAAVAIRHWAGQGAPDAWNVKVPGGVVGVKFFAGP-----EGHEHVELSGPA 305 Query: 272 KKEWEGKL 279 G L Sbjct: 306 VIVASGTL 313 >gi|226326691|ref|ZP_03802209.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198] gi|225204912|gb|EEG87266.1| hypothetical protein PROPEN_00544 [Proteus penneri ATCC 35198] Length = 120 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MGNPH + VE D+ ++ G +L +H F E N+ ++ +L LR +ERG G Sbjct: 1 MGNPHCVIQVE-DIKTAEVELLGPVLEQHERFPERANIGFMQIVDRNNLHLRVFERGAGE 59 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 T ACGS ACA+V ++ V V + GG LLIEW + N ++MTG A ++G + Sbjct: 60 TNACGSGACAAVAIGISQGLLDKRVKVTLPGGVLLIEWKGEGNSLYMTGPATHIYDGIIQ 119 Query: 281 I 281 + Sbjct: 120 L 120 >gi|227509661|ref|ZP_03939710.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190877|gb|EEI70944.1| diaminopimelate epimerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 329 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 28/301 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N+ ++D + + + AL D +++I Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELVALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + SF ET+ L Sbjct: 61 DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETS---- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + G P ++ P+ + + + D +++ NPH I FV Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176 Query: 172 EDDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ L G +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 177 SEEVMNSDALGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A H +SV GG + HD++ H+ + G A + K++I Sbjct: 237 SATSLAFCLNHPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294 Query: 283 T 283 Sbjct: 295 E 295 >gi|227512606|ref|ZP_03942655.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577] gi|227084071|gb|EEI19383.1| diaminopimelate epimerase [Lactobacillus buchneri ATCC 11577] Length = 329 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 28/301 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N+ ++D + + + AL D +++I Sbjct: 1 MVQLLKVHGSQNQFFILDQTELKTKLNQEELLALTKQITDPAKGLLDGADGVLVIDHSDH 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 +++IN DGS CGNG+R V R+L+ + + SF ET+ L Sbjct: 61 DGTLGSMQVINTDGSIASMCGNGLRTVSRYLSDKYHQNSFKVETMDSDLAVHRETS---- 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDR------FHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 + G P ++ P+ + + + D +++ NPH I FV Sbjct: 117 LAPGVPTFSVEISPVTFNKESLPFDNLDGDTLIDREVPAFTKGLKFTAIAVPNPHLISFV 176 Query: 172 EDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 +++ + D+ L +P F++GVN+S A++ L +RT+ERGVG T ACG+ Sbjct: 177 SEEVMNSDVLGKLGKELNQPNPYFTDGVNVSFAQILDHNQLFVRTYERGVGFTNACGTGM 236 Query: 230 CASVVASGCL----HKTNRAVSVKMLGGGLLIEWHDNN---HVFMTGEAKKEWEGKLDIK 282 A+ +A +SV GG + HD++ H+ + G A + K++I Sbjct: 237 SATSLAFCLNPPEVSDFEETISVYNPGGMVKTRVHDDDGSYHIDLIGNAT--FTHKVEIP 294 Query: 283 T 283 Sbjct: 295 E 295 >gi|300781007|ref|ZP_07090861.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030] gi|300532714|gb|EFK53775.1| diaminopimelate epimerase [Corynebacterium genitalium ATCC 33030] Length = 314 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 98/293 (33%), Gaps = 21/293 (7%) Query: 8 FAKMEGIGNKILVI----DMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----- 57 F K G N +V+ D + D + +L D + I Sbjct: 22 FIKAHGTENDFVVLIDVDDQLEQLGILDDDLVASLCDRRAGVGGDGFLRIVSSDAHDAQG 81 Query: 58 -ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R L ++ ++ F+ V Sbjct: 82 ANGNRWFMDYRNADGSIAEMCGNGIRVFAHVLVAQGLEQARQFDVDTRAGVKHITIHSLT 141 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 D + + +G L V + A+ + Sbjct: 142 GEDPNGSTHAVVEVGMG-PVGVTGVSTGRMGDFEFAGL--GVDVGNPHLAAVIPGLTPVQ 198 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARV----TSLESLDLRTWERGVGLTAACGSAACAS 232 +LA F H F EGVN+ I + +R WERGVG T +CG+ A+ Sbjct: 199 LAELA-FEQPAFDHEFFPEGVNVEIVTDPETADGDMRVGMRVWERGVGETRSCGTGTVAA 257 Query: 233 VVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 A+ ++V + GG L I + + MTG + G++ +K+ Sbjct: 258 ARAALADAGVENGTITVDVPGGTLTIAIN-DGEATMTGPSVIVARGEVSLKSL 309 >gi|120403425|ref|YP_953254.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] gi|166225738|sp|A1T7U8|DAPF_MYCVP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119956243|gb|ABM13248.1| diaminopimelate epimerase [Mycobacterium vanbaalenii PYR-1] Length = 289 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 106/305 (34%), Gaps = 37/305 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 + FAK G N +++ +T A+ AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVLLPDLTADLALTPAAVAALCDRRQGLGADGVLRVTTAGAARAAGVF 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 D ++ N DGS Q CGNG+R +L + R F ++ G Sbjct: 61 DRLPEGVVEGDWYMDYRNADGSIAQMCGNGVRVFAHYLRASGLESRDEFVVGSLAGPRPV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 N + D+ + + + + N V +GNPH Sbjct: 121 VLNALAGVGADVTVEMGKANQLGVGAA-------------TVGGRQFNGLAVDVGNPHLA 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + L ++ F +GVN+ + ++ +R ERGVG T +CG Sbjct: 168 CVDAAMSSRELAALDVAAPVVFDAAQFPDGVNVEVLTAPEDGAVSMRVHERGVGETRSCG 227 Query: 227 SAA-CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 + A+V A +++V++ GG +++ D N ++ G + G L + Sbjct: 228 TGTVAAAVAALAHQGSQTGSLTVRIPGGEVVVTITDANS-YLRGPSVLVAHGDL---ADE 283 Query: 286 WIKKN 290 W Sbjct: 284 WWAAQ 288 >gi|119868245|ref|YP_938197.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126434736|ref|YP_001070427.1| diaminopimelate epimerase [Mycobacterium sp. JLS] gi|166225734|sp|A3PYF9|DAPF_MYCSJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225735|sp|A1UEZ9|DAPF_MYCSK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|119694334|gb|ABL91407.1| diaminopimelate epimerase [Mycobacterium sp. KMS] gi|126234536|gb|ABN97936.1| diaminopimelate epimerase [Mycobacterium sp. JLS] Length = 293 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 105/304 (34%), Gaps = 30/304 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +++ +T ++AL D ++ + Sbjct: 1 MQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 + D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 61 ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + E ++ + L S + R F V + + Sbjct: 121 VLHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGR--------RFTGLGIDVGNPHLACV 172 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + L + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 173 DTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGETRSCGTG 232 Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ VA+ + V++ GG + + F+ G ++ G+L G+W Sbjct: 233 TVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATGEL---AGEWW 288 Query: 288 KKNE 291 + ++ Sbjct: 289 QSHQ 292 >gi|229094038|ref|ZP_04225123.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] gi|228689349|gb|EEL43167.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] Length = 164 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 123 PILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 P L IP+ + R+ F + F VSMGNPHA+ FV+ D+ L Sbjct: 4 PRLTRAEIPMLGEGETPFIRENFLYNNHRYAF----TAVSMGNPHAVIFVD-DVEQAPLT 58 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS K Sbjct: 59 TLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGK 118 Query: 242 TNR--AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 R ++V + GG L+I W + +V M G A+ G + Sbjct: 119 MERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYE 159 >gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula] Length = 221 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 +S + FAK G+GN ++ID R + + A+ + D ++ + D Sbjct: 73 ESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNFGVGADGVIFVLPGID-G 131 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTS---RMKRKSFTFETIRGILVAKENRDGSI 116 D +RI N DGSE + CGNG+RC +F++ R SFT T G +V + DG++ Sbjct: 132 TDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIHTGAGKIVPEVLGDGNV 191 Query: 117 SVDMGEPILDWKLIPLARSFDKM 139 VDMGEP+L +P S +K+ Sbjct: 192 RVDMGEPVLKASDVPTKLSPNKI 214 >gi|25028393|ref|NP_738447.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] gi|23493678|dbj|BAC18647.1| putative diaminopimelate epimerase [Corynebacterium efficiens YS-314] Length = 313 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 102/300 (34%), Gaps = 29/300 (9%) Query: 1 MQSSMVD------FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH 53 ++S ++ FAK N ++I ++T+D + L D ++ + Sbjct: 24 LRSRLIRVKKEIAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVV 83 Query: 54 DF-----QDASVD---AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIR 103 Q VD F+ N DGS + CGNG+R + + FT T Sbjct: 84 RAGELGVQTPGVDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRA 143 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G + + + S + F V+ VV Sbjct: 144 GARSVTVLSADR-DDAVVRVDMGPAAV-TGISTCMIADQPFAGMGVDLGNPHLACVVPGL 201 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGVGLT 222 P A L + L + A P + +A ++ +R WERGVG T Sbjct: 202 TPAA-------LKNIALEAPVFDTAFFPRGVNVELVTELADGLDDPAIHMRVWERGVGET 254 Query: 223 AACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +CG+ A+ A + V+V + GG + + + +TG ++ G + I Sbjct: 255 RSCGTGTVAAARAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 313 >gi|317009457|gb|ADU80037.1| diaminopimelate epimerase [Helicobacter pylori India7] Length = 273 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 101/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FVE L S L Sbjct: 120 DVIP------ALRCEKFFSSDSVLEHIPTFYLIDTGVPHLVGFVE---NKEWLNSLNALE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 TLIPKSNESLELSLK-NDEIFYKGAVRYI 258 >gi|270284154|ref|ZP_05965634.2| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093] gi|270277202|gb|EFA23056.1| diaminopimelate epimerase [Bifidobacterium gallicum DSM 20093] Length = 298 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 90/300 (30%), Gaps = 39/300 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ------ 56 +M+ K G GN L+ N T + L D ++ + Q Sbjct: 6 TMI---KAHGTGNDFLIYCDADGSVNPTPREVRELCDRHFGLGADGLIRVTKPQFVDQVS 62 Query: 57 --------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGI 105 V F+ N DGS + CGNG R F + F T G+ Sbjct: 63 TEVADECGAKGVQWFMDYRNADGSLAEMCGNGTRATALFAQHEGLADADQPFMLGTRAGV 122 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 + + + + + + V MGNP Sbjct: 123 KMLSSLGAQPGLGQHVFRVDM-------GGWSMGELYAYTVSIPGQPGQAPGTFVDMGNP 175 Query: 166 HAIFFVEDDLYHYDL---ASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWE 216 H + +ED + + P G N+ +R +E Sbjct: 176 HVVAVIEDAQSTLPVIDDLDLTHAPKVEPQLDHGQNVEFVRIDDMDERADQGEATMRVYE 235 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 RG G T +CG+ CA+ + + + GG L + DN+ V +TG A+ Sbjct: 236 RGCGETLSCGTGLCATAITLRARTGI-NHWRITVAGGILDVAVTDND-VQLTGNAELVAT 293 >gi|226306252|ref|YP_002766212.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] gi|259595060|sp|C0ZYN8|DAPF_RHOE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226185369|dbj|BAH33473.1| diaminopimelate epimerase [Rhodococcus erythropolis PR4] Length = 292 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 103/304 (33%), Gaps = 33/304 (10%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI---------- 52 + +DF+K G N +V+ ++ ++AL D I+ + Sbjct: 2 ATMDFSKGHGTQNDFVVLPDLDVRVDLEPARVSALCDRQRGLGADGILRVARAGALADAG 61 Query: 53 ----HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGIL 106 A+ D F+ N DGS + CGNG+R +L + + F + G Sbjct: 62 VLGALPDGVAAEDWFMDYRNSDGSIAEMCGNGVRVFAHYLKASGLESKDEFVVGSRAGAR 121 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + + D+ + K + + + +F V + Sbjct: 122 PVVVHGYDATHGDVTVAMGPIKDLGTSSA-----------TIDGRVFAGVGIDVGNPHLA 170 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + L + F GVN+ I + +R ERGVG T +CG Sbjct: 171 CVDEHVTAEVLSALDLSVSPGFDPGFFPHGVNIEIVTPIHDGGVHMRVHERGVGETRSCG 230 Query: 227 SAACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 + A+ A+ + +V V++LGG + + + + G + G + + Sbjct: 231 TGTVAAAAAALKFDGRDEGSVLVRVLGGEVQVTV-EGGEGSLRGPSVLVANGTI---SDA 286 Query: 286 WIKK 289 W + Sbjct: 287 WWQS 290 >gi|332673638|gb|AEE70455.1| diaminopimelate epimerase [Helicobacter pylori 83] Length = 278 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 103/274 (37%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAAHIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ L + N+ +F G + G L Sbjct: 231 ALIPKSNESLELSVK-NDEIFYKGTVRYIGMGVL 263 >gi|194468400|ref|ZP_03074386.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23] gi|194453253|gb|EDX42151.1| Diaminopimelate epimerase [Lactobacillus reuteri 100-23] Length = 333 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 134/307 (43%), Gaps = 20/307 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T++ + + D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTHPLTNEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D + Sbjct: 61 PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPG 120 Query: 118 VDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED-D 174 V + K A FD + +R V L+ F +++ NPH I FV + Sbjct: 121 VPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPSLRFSALAVPNPHLISFVSMEE 180 Query: 175 LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L L G + +P FS+GVN++ + L ++T+ERGVG T ACG+ A+ Sbjct: 181 LNGSALEELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS 240 Query: 234 VASGCLHK----TNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIKTGKW 286 +A H N +SV GG + I D+ + + + G A + + ++ Sbjct: 241 LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVEESTI 298 Query: 287 IKKNEDD 293 ++N D+ Sbjct: 299 HQENLDE 305 >gi|260907229|ref|ZP_05915551.1| diaminopimelate epimerase [Brevibacterium linens BL2] Length = 329 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 45/315 (14%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD--------- 57 F K G N +++ + + I L+ D ++ I Sbjct: 16 FIKGHGTQNDFVLLADDDSALEMHPETIAQLADRRSGLGSDGVIRIVRSASSGIPGAQEQ 75 Query: 58 --ASVDAFIRIINCDGSEVQSCGNGMRCVVR----FLTSRMKRKSFTFETIRGILVAKEN 111 A + F+ N DGS + CGNG+R + T GI + Sbjct: 76 AEAGAEWFMDYYNHDGSLSEMCGNGVRVFAHVLATTGRVAADSREILVGTRDGIKTVRTV 135 Query: 112 RDGSISVDMGEPI------------LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV 159 + ++ G+ W +I + + D + + R Sbjct: 136 LNPALGKQTGDATASVEQTLPGSAADSWYMIDM-GEWSLDDSEDVIVSTSGIEVPRPGMR 194 Query: 160 VSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT--------SLESLD 211 V GNPH + + + A + P+ +G N+ + +L Sbjct: 195 VETGNPHTVVALAESAELES-AELRDAPVLDPVPPQGSNVEYIVMEPARSDVAGGEGALR 253 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHDN-----NH 264 +R +ERGVG T +CG+ ACA+ +A+ N V + GG L I N Sbjct: 254 MRVFERGVGETRSCGTGACAAAIAAHHWAGPNSPLQWRVDVPGGQLRIGITPNEDGTRGS 313 Query: 265 VFMTGEAKKEWEGKL 279 V ++G A +G + Sbjct: 314 VTLSGPAVLVADGTI 328 >gi|227890858|ref|ZP_04008663.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741] gi|227867267|gb|EEJ74688.1| diaminopimelate epimerase [Lactobacillus salivarius ATCC 11741] Length = 330 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 30/316 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIH 53 M+ S ++ K+ G GN ++D + + A D D ++ + Sbjct: 1 MEESRMEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ 60 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 D +R+IN DGSE CGNG+R V R+L+ + F +T + A Sbjct: 61 -AGHEGTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQT----MHADLEVK 115 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-----NPFVVSMGNPHAI 168 + + P D ++ P++ + ++ V++ NPH I Sbjct: 116 KADKLAEKVPAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLI 175 Query: 169 FFVEDDL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 FV+ + + +P+F +GVN+S + + +RT+ERGVG T AC Sbjct: 176 AFVDHETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNAC 235 Query: 226 GSAACASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEG 277 G+A AS + LH + ++V GG + + +N +M+ G A + + Sbjct: 236 GTAMSASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAK- 294 Query: 278 KLDIKTGKWIKKNEDD 293 ++I I N D+ Sbjct: 295 -VNISQADAINGNFDN 309 >gi|317180337|dbj|BAJ58123.1| diaminopimelate epimerase [Helicobacter pylori F32] Length = 273 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYQIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + ++F + +++ G H + FVE L S L Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVLHLVGFVE---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|330841574|ref|XP_003292770.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum] gi|325076961|gb|EGC30707.1| hypothetical protein DICPUDRAFT_157530 [Dictyostelium purpureum] Length = 358 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 63/340 (18%), Positives = 115/340 (33%), Gaps = 67/340 (19%) Query: 9 AKMEGIGNKILVID-------MRGCHDNITSDAIN----ALSTDD-NTHFDQIMLIHD-F 55 +KM G GN +V ++ + I+ +S DQ++++ D Sbjct: 19 SKMHGAGNDFVVFHINAVKRLNSDDESEVSIEEISKVTPKISHRKLGIGCDQLIIVDDSP 78 Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT---------FETIRGIL 106 ++ + + +INCDG CGNG+RC ++L + ET G++ Sbjct: 79 KNKETNFGMHVINCDGVIEMMCGNGVRCASKYLLDNHIKSKSKSYEGNGEQLIETKSGVI 138 Query: 107 VA-------KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR---- 155 + + + + KL+ + +D + Sbjct: 139 KTYPLLDHQNTDYKQDSRLMVKVNMGQPKLVSTSLKKYSLDEQILKKNSIPPKESFVITI 198 Query: 156 -----------NPFVVSMGNPHAIFFVEDDLY------------------HYDLASFGNL 186 +VS G HA+ F++ ++ Sbjct: 199 DDLNLPYCNKIEIVLVSCGGAHAVVFLDRNIELGYFTQNYGKEDLSKINIKDLADKIQEH 258 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTW--ERGVGLTAACGSAACASVVASGCLHKTNR 244 V + E +++ ERG G T ACG+ ACA +A+ L+ N Sbjct: 259 PLFLKDTIPNVEFVYQSIKDKEINKVQSRVVERGSGETLACGTGACAVGIAAYLLNYVND 318 Query: 245 AVSV--KMLGGGLLIEW-HDNNHVFMTGEAKKEWEGKLDI 281 + + +M GG LLI+W + N F TG A + + + Sbjct: 319 SSDISCEMPGGNLLIQWSSETNETFKTGPAVTLFNSEFTV 358 >gi|326384488|ref|ZP_08206168.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] gi|326196833|gb|EGD54027.1| diaminopimelate epimerase [Gordonia neofelifaecis NRRL B-59395] Length = 300 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 94/300 (31%), Gaps = 38/300 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 + F K G N +++ R +T + AL D ++ + Sbjct: 7 LAFVKGHGTQNDFVILPDRQAQIELTEELTAALCDRQRGLGADGVLRVATAGSLVAEGVL 66 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + VD F+ N DGS + CGNG+R F + FT + G Sbjct: 67 ERLPDGVSGVDWFMDYRNADGSIAEMCGNGVRVFAHFCRAEGLVDSDEFTVGSRAGARPV 126 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + + + + P+ G V + + Sbjct: 127 RIHSAD-----ETDAEVSVSMGPVVLEGAGRV------GIAGRTLTGEAVDVGNPHLACV 175 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS--------LESLDLRTWERGVG 220 L F G N+ I + +R +ERGVG Sbjct: 176 VDGLTVADLAGLDLTTGAELDAAQFPHGANVEILTPLTAASDGGSADFHAHMRVFERGVG 235 Query: 221 LTAACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T +CG+ A+ A + + AV++ + GG +L+ + + G ++ G+L Sbjct: 236 ETRSCGTGLVAAAAAALSGAGRESGAVAITVPGGDVLVTVA-DGSAVLRGPSRLVARGEL 294 >gi|305432319|ref|ZP_07401482.1| diaminopimelate epimerase [Campylobacter coli JV20] gi|304444667|gb|EFM37317.1| diaminopimelate epimerase [Campylobacter coli JV20] Length = 249 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 99/278 (35%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++I+ D ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVIINASEKKDR-SALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K F T G++ A + + Sbjct: 58 FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANVDNN----------- 106 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 S + +I +N + G PH + F E +L +DL Sbjct: 107 ----------SVEVSLGKIKNIQDAFSECEKNWQLCDTGVPHLVHFCE-NLDEFDLKLCK 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + N++ +V + +L +RT+ERGV T ACG+ A + K + Sbjct: 156 QMRE-----KYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V G L ++ +N +F G+ + +E + Sbjct: 211 NQARVIPKSGEELSFKF-ENEELFFKGKVRCCFEANYN 247 >gi|108799130|ref|YP_639327.1| diaminopimelate epimerase [Mycobacterium sp. MCS] gi|108769549|gb|ABG08271.1| diaminopimelate epimerase [Mycobacterium sp. MCS] Length = 313 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 105/304 (34%), Gaps = 30/304 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 V FAK G N +++ +T ++AL D ++ + Sbjct: 21 VQFAKGHGTQNDFVLLPDLDARLALTPAVVSALCDRRRGLGADGVLRVTTAKAALSAGVF 80 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT--SRMKRKSFTFETIRGILVA 108 + D ++ N DGS Q CGNG+R +L R F ++ G Sbjct: 81 ERLPEGVGAGDWYMDYRNADGSIAQMCGNGVRVFAHYLRAADLESRDEFVVGSLAGPRPV 140 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + E ++ + L S + R F V + + Sbjct: 141 VLHGFDLAHRSRAEVTVEMGKVNLLGSGSAVVGGR--------RFTGLGIDVGNPHLACV 192 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + L + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 193 DTTLTEAELAALDVAAPVDFDPAQFPDGVNVEVLTALRDGAVSMRVHERGVGETRSCGTG 252 Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ VA+ + V++ GG + + F+ G ++ G+L G+W Sbjct: 253 TVAAAVAALAQEGAAVGTLDVRIPGGVVT-VSVTDTTSFLRGPSELVATGEL---AGEWW 308 Query: 288 KKNE 291 + ++ Sbjct: 309 QSHQ 312 >gi|111225066|ref|YP_715860.1| diaminopimelate epimerase [Frankia alni ACN14a] gi|111152598|emb|CAJ64339.1| diaminopimelate epimerase [Frankia alni ACN14a] Length = 368 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 118/337 (35%), Gaps = 75/337 (22%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------HDFQ 56 + F K G GN +V+ +T+D + AL D ++ + Sbjct: 7 LRFVKGHGTGNDFVVLPDPDGDLELTADLVRALCDRRTGVGADGVLRVVLSAAVPEVAPL 66 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG 114 + F+ N DGS + CGNG R R+ + FT T G+ + + G Sbjct: 67 AGAARWFMDYRNADGSVAEMCGNGARVFARYLVAAGYAQPGRFTIATRAGLRLVEVPAAG 126 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED- 173 ++VDMG P L VSMGNPHA+ F +D Sbjct: 127 DVTVDMGPPRLSAGA---------------GSAVTVAERDFTAVGVSMGNPHAVCFADDL 171 Query: 174 DLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 D+ A P+ F +GVN+ I V + +R +ERGVG TA+CG+ ACA Sbjct: 172 DVPALRDLDLTRPPAFSPVDFPDGVNVEIV-VERPGGVAMRVYERGVGETASCGTGACAV 230 Query: 233 VVASGCLHKTN-------------------------RAVSVK------------------ 249 VA R +V Sbjct: 231 AVAWAARQGLRPTPGSALASEPAPDAEPGQSAAAGVRPSAVSGVRHGAGAAPSAVEVEVE 290 Query: 250 --MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 + GGGL++ W V + G A+ ++G L + Sbjct: 291 VDVPGGGLVVVWRP-GTVLLRGPAELVYDGVLRPASL 326 >gi|281202622|gb|EFA76824.1| diaminopimelate epimerase [Polysphondylium pallidum PN500] Length = 343 Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 3/150 (2%) Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 P S D + P F+ N +VSMGNPH + +E ++ + + +G ++ H Sbjct: 188 PKLLSIKSKQEDFCKMLPFKGHFI-NATLVSMGNPHCVVHLE-NVQDFPMDYYGEVIETH 245 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 P+F + N+ V S + R W+RG G T ACG+ ACA VVA KT+R +V M Sbjct: 246 PIFPDKTNVEFVEVISSNQVRARVWQRGCGTTNACGTGACAIVVAGVLRGKTDRKCTVHM 305 Query: 251 LGGGLLIEW-HDNNHVFMTGEAKKEWEGKL 279 GG L +EW +++ +V+ +G + ++G + Sbjct: 306 DGGSLEVEWRNEDEYVYHSGPSTTTFQGTV 335 >gi|317177601|dbj|BAJ55390.1| diaminopimelate epimerase [Helicobacter pylori F16] Length = 273 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ L + N+ +F G + G L Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYIGMGVL 263 >gi|317179070|dbj|BAJ56858.1| diaminopimelate epimerase [Helicobacter pylori F30] Length = 273 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + + + G PH + FV+ L S L Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYFIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 TLIPKSNESLELSLK-NDEIFYKGAVRYI 258 >gi|259507450|ref|ZP_05750350.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] gi|29839331|sp|Q8FPE1|DAPF_COREF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|259164938|gb|EEW49492.1| diaminopimelate epimerase [Corynebacterium efficiens YS-314] Length = 283 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 98/289 (33%), Gaps = 23/289 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDF-----QDAS 59 + FAK N ++I ++T+D + L D ++ + Q Sbjct: 5 IAFAKGHATENDFIIIHDPDGTIDLTADEVTRLCDRRAGLGADGVLRVVRAGELGVQTPG 64 Query: 60 VD---AFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDG 114 VD F+ N DGS + CGNG+R + + FT T G Sbjct: 65 VDPGWWFMDYRNADGSLAEMCGNGVRVFAHWLAAHQLVDTTDFTIGTRAGARSVTVLSAD 124 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + + + S + F V+ VV P A Sbjct: 125 R-DDAVVRVDMGPAAV-TGISTCMIADQPFAGMGVDLGNPHLACVVPGLTPAA------- 175 Query: 175 LYHYDLASFGNLLAKHPMFSE-GVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC-AS 232 L + L + A P + +A ++ +R WERGVG T +CG+ A+ Sbjct: 176 LKNIALEAPVFDTAFFPRGVNVELVTELADGLDDPAIHMRVWERGVGETRSCGTGTVAAA 235 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A + V+V + GG + + + +TG ++ G + I Sbjct: 236 RAALADAGQAVGTVTVYVPGGAVEVGIREETS-TLTGPSRIIATGTVRI 283 >gi|319441570|ref|ZP_07990726.1| diaminopimelate epimerase [Corynebacterium variabile DSM 44702] Length = 292 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 30/293 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 ++F K G GN +++ G ++T + + L+ D ++ I Sbjct: 4 LEFLKGHGTGNDFVILPDTGVDVDLTPELVRGLADRHRGIGGDGVIRIATTGALVDAGVI 63 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A D F+ N DGS + CGNG+R L + + Sbjct: 64 DEAPEGVADDDWFMDYRNADGSLAEMCGNGVRVFGHVLHDLGLLEGNHAVIGTRAGRREL 123 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIF 169 + + L S + + +H V MGNPH A Sbjct: 124 TVHAVAGTTADVSVDMGAPVVLGESSATLAGETYH-----------GTGVDMGNPHLACV 172 Query: 170 FVEDDLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 G L P F GVNL + + +R ERGVG T +CG+ Sbjct: 173 VPGLSPEKLATLPVGLLPEWDPAFFPAGVNLELVTAPVDGVVHMRVHERGVGETLSCGTG 232 Query: 229 ACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ VA+ + V V++ GG + + + + G ++ + G ++ Sbjct: 233 TVAAAVAALRSTGEETGQVRVRIPGGEVQVTVSSESS-ELRGPSQLLFRGTVE 284 >gi|57504791|ref|ZP_00370823.1| diaminopimelate epimerase [Campylobacter coli RM2228] gi|57019352|gb|EAL56053.1| diaminopimelate epimerase [Campylobacter coli RM2228] Length = 249 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 56/278 (20%), Positives = 99/278 (35%), Gaps = 34/278 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHKK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K F T G++ A + + Sbjct: 58 FYNNDGSTASMCGNGSRAAAHFAHHINGIKPHMAFLTGAGVIKANVDNN----------- 106 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 S + +I +N + G PH + F E +L +DL Sbjct: 107 ----------SVEVSLGKIKNIQDAFSECEKNWQLCDTGVPHLVHFCE-NLDEFDLKLCK 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + N++ +V + +L +RT+ERGV T ACG+ A + K + Sbjct: 156 QMRE-----KYNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIH 210 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V G L ++ +N +F G+ + +E + Sbjct: 211 NQARVIPKSGEELSFKF-ENEELFFKGKVRYCFEANYN 247 >gi|220912235|ref|YP_002487544.1| diaminopimelate epimerase [Arthrobacter chlorophenolicus A6] gi|219859113|gb|ACL39455.1| Diaminopimelate epimerase [Arthrobacter chlorophenolicus A6] Length = 314 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 102/311 (32%), Gaps = 53/311 (17%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ-------- 56 + F+K G GN +++ I + + AL D ++ + Sbjct: 19 LRFSKGHGTGNDFVLVADPEGEHTIDAGHVAALCNRHLGIGGDGLIRAVPSRFLPEGREI 78 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVA 108 + + F+ N DGS + CGNG+R V FL + T G+ Sbjct: 79 LAANPDAEWFMDYRNGDGSLSEMCGNGVRVFVHFLRAEGLIDLPVGGALAIGTRGGLKTV 138 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG + A++ D + R VSMGNPH + Sbjct: 139 VRTADGYAVDMGPWEFIFPGE-ATAKAMDSLVTAE------GLEVPRPALSVSMGNPHTV 191 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 + +L + A P+ + G N+ + S+ +R ERGVG T Sbjct: 192 VAL-AELGELEATRLYTAPAVEPVPANGTNVEFVVPSEPLVLDGIGSVTMRVHERGVGET 250 Query: 223 AACGSAACASVVASGCLHKTNRA--VSVKM------------LGGGLLIEWHDNNHVFMT 268 +CG+ ACA+ VA V + GG HV ++ Sbjct: 251 QSCGTGACAAAVAIRHWAGAGAPDAWRVNVPGGVVGVKFFAGPGGH--------EHVELS 302 Query: 269 GEAKKEWEGKL 279 G A G L Sbjct: 303 GPAVIVASGTL 313 >gi|269956053|ref|YP_003325842.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894] gi|269304734|gb|ACZ30284.1| diaminopimelate epimerase [Xylanimonas cellulosilytica DSM 15894] Length = 321 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 102/318 (32%), Gaps = 45/318 (14%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAIN---------------------ALST 40 ++ + F K G N +++ +T + + A++ Sbjct: 10 STTGLRFTKGHGTHNDFVLVADTRGDLELTPEQVRTLADRRGGIGGDGVIRLAPTAAIAR 69 Query: 41 DDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE 100 DQ++ ++ + F+ N DGS + CGNG+R F S T E Sbjct: 70 AGEAVADQVL----AEEPAAIWFMDYRNADGSVAEMCGNGVRVFTAFAESLGLVDLDTTE 125 Query: 101 ----TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN 156 T G+ ++ + W+L + + R Sbjct: 126 LALGTRAGVKRVRKETGPDGVPWYAVDLGPWRL--PGGAEAAAAGADAAVAVRGWAAPRP 183 Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL--------E 208 V +GNPH + + + P G N+ + Sbjct: 184 ALSVDLGNPHTVVALGSTDELARID-LTQAPQVAPPPPHGTNVELVVPLEETTSGAETAG 242 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTN-----RAVSVKMLGGGLLIEWHDNN 263 + +R ERGVG T +CG+ A A+ +A V++ GG L + + Sbjct: 243 RVRMRVHERGVGETQSCGTGAVAAALAVRTWAAAGGRAPVDTWFVEVPGGLLRVRVLTDG 302 Query: 264 HVFMTGEAKKEWEGKLDI 281 H + G A+ + G+ + Sbjct: 303 HAELAGPAQLVFSGETTL 320 >gi|227529337|ref|ZP_03959386.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540] gi|227350765|gb|EEJ41056.1| diaminopimelate epimerase [Lactobacillus vaginalis ATCC 49540] Length = 329 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 32/293 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-----TDDNT--HFDQIMLIHDFQD 57 M + K+ G N ++D +T D + AL+ + D +++++ Sbjct: 1 MTELLKVHGSQNCFFILDQTKLQRELTDDELVALAQQITSKEHGLLGGADGVLVVNRPVR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R + F +T+ L ++ D Sbjct: 61 EGATAQMRVINADGSEASMCGNGLRTVARYVAERDNLEDFKVDTMDASLRVRKQPD---- 116 Query: 118 VDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLRNPFV-VSMGNPHAIFFV 171 + G P ++ P+ A +D + DR V L F +++ NPH I F Sbjct: 117 LASGVPAFAVEISPVRFNKEALPYDHLGHDRLLNTLVPELLPGYRFSGIAVPNPHLISF- 175 Query: 172 EDDLYHYDLASFGNLLAK----HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + G L +P FS+GVN++ + + ++T+ERGVG T ACG+ Sbjct: 176 ---VDENGFKELGPLGEWLNGENPYFSDGVNVNFGHILGPNKIFVKTYERGVGFTNACGT 232 Query: 228 AACASVVASGCLHK----TNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273 A+ +A +H + ++V GG + H NH + + G A Sbjct: 233 GMSATSLAFALIHPELASFGKPITVFNPGGMVRTILHHENHRYWIELIGNATF 285 >gi|257458717|ref|ZP_05623841.1| diaminopimelate epimerase [Campylobacter gracilis RM3268] gi|257443906|gb|EEV19025.1| diaminopimelate epimerase [Campylobacter gracilis RM3268] Length = 292 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 97/292 (33%), Gaps = 23/292 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDA--SVDAF 63 + +K GN ++ + + A D D ++++ + ++ Sbjct: 1 MKISKYNASGNDFVIF-TDSVKADRSKLARELCDRRDGVGADGLIVVLPKFNGIEGINFE 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R V + + + + G V G ++ E Sbjct: 60 WEFYNSDGSSADMCGNGSRAVC-MYAYENFLAAQSMKFLSGAGVISGEIFGIFGGNLSES 118 Query: 124 ILD--------------WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + L + + M +G + + G PH + Sbjct: 119 MRGELRNVSFGEIFNLRPNAHALVANVEVMLTRPKRLGESFEEAGLTWYFYNTGVPHLVT 178 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSA 228 FV DL +D +L K+ + + + L +RT+ERGV T ACG+ Sbjct: 179 FVS-DLNEFDAVLARDLREKYNANVNYALVQ--SRLASKILKVRTFERGVEAETLACGTG 235 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 A +A + V G L + D ++ G+ + ++G+ Sbjct: 236 MAACFIAGVENMGLASDIRVIPASGETLNLRLGDGGKIYFRGDVRHTFDGEF 287 >gi|148543844|ref|YP_001271214.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016] gi|184153245|ref|YP_001841586.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112] gi|227364748|ref|ZP_03848797.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3] gi|325682625|ref|ZP_08162142.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A] gi|148530878|gb|ABQ82877.1| diaminopimelate epimerase [Lactobacillus reuteri DSM 20016] gi|183224589|dbj|BAG25106.1| diaminopimelate epimerase [Lactobacillus reuteri JCM 1112] gi|227070207|gb|EEI08581.1| diaminopimelate epimerase [Lactobacillus reuteri MM2-3] gi|324978464|gb|EGC15414.1| diaminopimelate epimerase [Lactobacillus reuteri MM4-1A] Length = 333 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 132/307 (42%), Gaps = 20/307 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNT--HFDQIMLIHDFQD 57 MV K+ G N ++D + + + + + D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTNPLNDEELVSFTQQITDAQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D + Sbjct: 61 PGSAAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPG 120 Query: 118 VDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED-D 174 V + K A FD + R V L+ F +++ NPH I FV + Sbjct: 121 VPAFAVEISPVKFDRTALPFDNLGHKRLLDTLVPELYPSLRFSALAVPNPHLISFVSMEE 180 Query: 175 LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L L G + +P FS+GVN++ + L ++T+ERGVG T ACG+ A+ Sbjct: 181 LNGSALKELGTRLNSDNPYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS 240 Query: 234 VASGCLHK----TNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIKTGKW 286 +A H N +SV GG + I D+ + + + G A + + ++ Sbjct: 241 LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWIELIGNAT--FTNIITVEESTI 298 Query: 287 IKKNEDD 293 ++N D+ Sbjct: 299 HQENLDE 305 >gi|297379767|gb|ADI34654.1| diaminopimelate epimerase [Helicobacter pylori v225d] Length = 273 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 101/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258 >gi|308063644|gb|ADO05531.1| diaminopimelate epimerase [Helicobacter pylori Sat464] Length = 273 Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A VA+ + T Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFVAARIFYSTPEKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 ALIPKSSESLELSLK-NDEIFYKGAVRYI 258 >gi|217033511|ref|ZP_03438940.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10] gi|216944036|gb|EEC23467.1| hypothetical protein HP9810_905g30 [Helicobacter pylori 98-10] Length = 273 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 101/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258 >gi|188527587|ref|YP_001910274.1| diaminopimelate epimerase [Helicobacter pylori Shi470] gi|229807502|sp|B2UTR2|DAPF_HELPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|188143827|gb|ACD48244.1| diaminopimelate epimerase [Helicobacter pylori Shi470] Length = 273 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPEKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 ALIPKSSESLELSLK-NDEIFYKGAVRYI 258 >gi|320094014|ref|ZP_08025839.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979058|gb|EFW10576.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 178 str. F0338] Length = 324 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 99/314 (31%), Gaps = 48/314 (15%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRIIN 68 K G GN +V + +++ + AL + D + F+ N Sbjct: 14 KAHGCGNSFVVATDADDSHDPSAEEVRALCSQAFGIGADGFIRCVRS---GGAWFMDYRN 70 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKENRDGSISVDMGEP 123 DGS+ + CGNG+R V L +S T G + + G Sbjct: 71 ADGSKAEMCGNGVRVFVDHLRREGLVRLAPGESLEVLTRGGTRTVELVAEAGGGAAEGCG 130 Query: 124 ILDWKLIPLA-----------RSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 A R+ + + + V M NPH + V+ Sbjct: 131 EGGGAAGCGAAEDGAQYRVDMGPASSPARETVKVSVPGIPGVLSGIWVDMPNPHTVVAVD 190 Query: 173 ----------DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-----ESLDLRTWER 217 + +A A P EG NL + + L +R ER Sbjct: 191 SLAALEGAQLPAVDAARVA-PQMRPAYEPEPREGTNLELVVDLTREGDEVGHLRMRVLER 249 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD----------NNHV 265 GVG T ACG+ CA+ VA+ V + GG + ++ V Sbjct: 250 GVGETMACGTGCCAAAVATALRRGPGAPASWIVDVPGGRVRVDIDGVIDWDGPGLTGAPV 309 Query: 266 FMTGEAKKEWEGKL 279 F+TG A + E + Sbjct: 310 FLTGPATRVAEIVI 323 >gi|262202147|ref|YP_003273355.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] gi|262085494|gb|ACY21462.1| diaminopimelate epimerase [Gordonia bronchialis DSM 43247] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 33/296 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI------------ 52 + F K G N +++ +I + + AL D ++ + Sbjct: 7 LRFVKGHGTQNDFVILADPAADLDIDASLVAALCDRPRGIGADGLLRVARAGALVAAGVL 66 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 A D F+ N DGS + CGNG+R FL +R FT + G Sbjct: 67 EMLPDGVAPDDWFMDYRNADGSIAEMCGNGVRVFAHFLRARGLVDVDEFTVGSRAGGRPV 126 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + + + +D D + V + + Sbjct: 127 TVHSHD----------ALSADVTVEMGQATVDFDAAVRIGDDLYVGTKVDVGNPHLACVV 176 Query: 169 FFVEDD----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 ++ D + H E + + + +R +ERGVG T + Sbjct: 177 GDLDVDELAAVDFTAGVRLEAADFPHGANVELLTRPAVADDGVLTAHMRVFERGVGETRS 236 Query: 225 CGSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CG+ A+ A+ + + + + GG +L+ + G + EG+L Sbjct: 237 CGTGLVAAAAAAFAGRGEPGGDLRIHVPGGTVLVTIAATGT-RLRGPSMLVAEGEL 291 >gi|108562970|ref|YP_627286.1| diaminopimelate epimerase [Helicobacter pylori HPAG1] gi|123073806|sp|Q1CTW0|DAPF_HELPH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|107836743|gb|ABF84612.1| diaminopimelate epimerase [Helicobacter pylori HPAG1] Length = 273 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DVIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKEGLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|227544854|ref|ZP_03974903.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] gi|300909925|ref|ZP_07127385.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112] gi|227185174|gb|EEI65245.1| diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] gi|300892573|gb|EFK85933.1| diaminopimelate epimerase [Lactobacillus reuteri SD2112] Length = 333 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 20/307 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI-----NALSTDDNT--HFDQIMLIHDFQD 57 MV K+ G N ++D +T + T + D +++++ Sbjct: 1 MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTR 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 A +R+IN DGSE CGNG+R V R++ R F +T+ L +++ D + Sbjct: 61 PGSVAQMRVINADGSEASMCGNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPG 120 Query: 118 VDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVED-D 174 V + K A FD + +R V L+ F +++ NPH I FV + Sbjct: 121 VPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNLRFSALAVPNPHLISFVSMEE 180 Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 L L G L FS+GVN++ + L ++T+ERGVG T ACG+ A+ Sbjct: 181 LNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS 240 Query: 234 VASGCLHK----TNRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKKEWEGKLDIKTGKW 286 +A H N +SV GG + I D+ + V + G A + + ++ Sbjct: 241 LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWVELIGNAT--FTHIITVEESTI 298 Query: 287 IKKNEDD 293 ++N D+ Sbjct: 299 HQENLDE 305 >gi|254779442|ref|YP_003057547.1| diaminopimelate epimerase [Helicobacter pylori B38] gi|254001353|emb|CAX29338.1| Diaminopimelate epimerase (DAP epimerase) [Helicobacter pylori B38] Length = 272 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCKKFFSSDSVLENIPMFYLIDTGVPHLVGFVK---NKRLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N+++A + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINVAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|308184349|ref|YP_003928482.1| diaminopimelate epimerase [Helicobacter pylori SJM180] gi|308060269|gb|ADO02165.1| diaminopimelate epimerase [Helicobacter pylori SJM180] Length = 273 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ + + D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSR--NYDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYQIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + ++++ G PH + FV+ L S Sbjct: 120 DTIP------ALRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVK---NKEWLNSLNTPE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ H T + Sbjct: 171 LRALRHEFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G A+ Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGVARYI 258 >gi|254821029|ref|ZP_05226030.1| diaminopimelate epimerase [Mycobacterium intracellulare ATCC 13950] Length = 288 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 111/303 (36%), Gaps = 33/303 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +V+ ++T + AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVVLPDPAAELSLTGSRVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A+ D ++ N DGS Q CGNG+R +L + E +V Sbjct: 61 DRLPDGVAADDWYMDYRNADGSIAQMCGNGVRVFAHYLRASG------LEDRDDFVVGSL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168 +SV + + + ++ D G + + +GNPH + Sbjct: 115 AGPRPVSVHRVDGTTADISVDMGKANTLGPGDAVLGGRR-----FSGVAIDVGNPHLACV 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L + F +GVN+ I ++ +R ERGVG T +CG+ Sbjct: 170 DPDLTVDALAALDVAAPVSFDPAQFPDGVNVEILTAPDAGAVHMRVHERGVGETRSCGTG 229 Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ VA+ + ++V++ GG +++ D ++ G + G++ + +W Sbjct: 230 TVAAAVAALAGTGADTGTLTVRVPGGEVVVTITDATS-YLRGPSVLVAHGEI---SEEWW 285 Query: 288 KKN 290 ++ Sbjct: 286 REQ 288 >gi|307722038|ref|YP_003893178.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294] gi|306980131|gb|ADN10166.1| diaminopimelate epimerase [Sulfurimonas autotrophica DSM 16294] Length = 252 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 30/279 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + AK GN ++ + A D D +++I + D Sbjct: 1 MKIAKYSANGNDFVIFHDDKKEERY-ELAKTLCHRQDGIGADGLIVIVP--NDEYDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R + + + F T G++ A+ + S + + Sbjct: 58 FYNSDGSHADMCGNGSRACAHYAYNNGLAPATMHFMTGAGVIGAQVEENTPKSGMVESEL 117 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++I FD N ++++ G PH + + ++ Sbjct: 118 TPPEIIETEIEFD----------------GHNWWLINTGVPHLVRYTDN-------IKEF 154 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + + +L +RT+ERGV T ACG+ A + Sbjct: 155 DTEEARELRYVYNANVNIMYIEDGNLRVRTYERGVEDETLACGTGMAACFYRAYKEGNVQ 214 Query: 244 RAVSVK-MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V G L + ++ + G KK +E + D+ Sbjct: 215 NNIEVYPTSGDTLYLGYNGK-TITFKGRVKKTFETEWDV 252 >gi|300214571|gb|ADJ78987.1| Diaminopimelate epimerase (DAP epimerase) [Lactobacillus salivarius CECT 5713] Length = 325 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 123/311 (39%), Gaps = 30/311 (9%) Query: 6 VDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIHDFQDA 58 ++ K+ G GN ++D + + A D D ++ + Sbjct: 1 MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ-AGHE 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+IN DGSE CGNG+R V R+L+ + F +T + A + + Sbjct: 60 GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQT----MHADLEVKKADKL 115 Query: 119 DMGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 P D ++ P++ + V++ NPH I FV+ Sbjct: 116 AEKVPAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSETIKFSAVAVPNPHLIAFVDH 175 Query: 174 DL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +P+F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKLDIK 282 AS + LH + ++V GG + + +N +M+ G A + + ++I Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAK--VNIS 293 Query: 283 TGKWIKKNEDD 293 I N D+ Sbjct: 294 QADAINGNFDN 304 >gi|78778240|ref|YP_394555.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251] gi|78498780|gb|ABB45320.1| diaminopimelate epimerase [Sulfurimonas denitrificans DSM 1251] Length = 257 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 36/283 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDF-------QDA 58 + K GN ++ D + A + D ++++ + Sbjct: 1 MRVTKYSANGNDFVIFHTFVKKDR-SLLAKKLCHRQNGIGADGLIVLLPKSKNEIGGDKS 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 +D + N DGSE CGNG R + ++ ++ + Sbjct: 60 KIDFEWQFYNSDGSEANMCGNGSRACAHYAYVNELAQNVMKFLTGAGIIGAVVDGDMVLS 119 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 ++ P + K I ++ +++ G PH ++F + D+ + Sbjct: 120 ELTPPKIIDKEI--------------------LENGKSWWLLDTGVPHLVYFTK-DITKF 158 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASG 237 D+A ++ VN++ + L +RT+ERGV T ACG+ A + Sbjct: 159 DIAE---ARELRDKYNANVNIAFIEGKN---LRVRTYERGVEDETLACGTGMAACFYRAY 212 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + V G L ++ + G + + ++D Sbjct: 213 SEKVVGNDIEVYPTSGETLYLGVNDRTITFRGRVRSIFSAEID 255 >gi|317013985|gb|ADU81421.1| diaminopimelate epimerase [Helicobacter pylori Gambia94/24] Length = 272 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + ++++ G PH + FV+ L S L Sbjct: 120 DTIP------NLRCKKFFTNDSVLENIPMFYLINTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A + + H T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVAHLFHNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G A+ Sbjct: 231 TLIPKSNESLELSLK-NDEIFYKGVARYI 258 >gi|315586749|gb|ADU41130.1| diaminopimelate epimerase [Helicobacter pylori 35A] Length = 273 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 15/274 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DVIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A + + + T + Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIVARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ L + N+ +F G + G L Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYIGMGVL 263 >gi|15645191|ref|NP_207361.1| diaminopimelate epimerase [Helicobacter pylori 26695] gi|6014914|sp|O25290|DAPF_HELPY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2313673|gb|AAD07622.1| diaminopimelate epimerase (dapF) [Helicobacter pylori 26695] Length = 273 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 100/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FVE L S L Sbjct: 120 DVIP------ALRCEKFFSSGSVLEHIPTFYLIDTGVPHLVGFVE---NKEGLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|325672726|ref|ZP_08152422.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] gi|325556603|gb|EGD26269.1| diaminopimelate epimerase [Rhodococcus equi ATCC 33707] Length = 289 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 34/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 ++F+K G N +++ + + + AL D ++ + Sbjct: 1 MEFSKGHGTENDFVILPDPDADLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG+R +L + R F + G Sbjct: 61 PELPEGVGADDWFMDYRNGDGSIAEICGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 + + D+ + R+ + + +GNPH Sbjct: 121 HVHSADHVHGDVTVDM-------------GRVRELGTSTATVGGRVLEGIGIDVGNPHLA 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + L F EGVN+ I ++ +R ERGVG T +CG Sbjct: 168 CVDPDLTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSCG 227 Query: 227 SAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + A+ VA+ + V V++ GG + + D + G + G++D Sbjct: 228 TGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGRID 281 >gi|308182722|ref|YP_003926849.1| diaminopimelate epimerase [Helicobacter pylori PeCan4] gi|308064907|gb|ADO06799.1| diaminopimelate epimerase [Helicobacter pylori PeCan4] Length = 273 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ + + D Sbjct: 3 FYKYSGSGNDFLIAQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSR--NYDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYEIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + ++++ G PH + FV+ L S L Sbjct: 120 DTIP------NLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G A+ Sbjct: 231 TLIPKSNEFLELSLK-NDEIFYKGVARYI 258 >gi|312139393|ref|YP_004006729.1| diaminopimelate epimerase dapf [Rhodococcus equi 103S] gi|311888732|emb|CBH48044.1| diaminopimelate epimerase DapF [Rhodococcus equi 103S] Length = 289 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 34/295 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 ++F+K G N +++ + + + AL D ++ + Sbjct: 1 MEFSKGHGTENDFVILPDPDVDLALPAHRVAALCDRRRGLGADGLLRVARAGALAAVGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D F+ N DGS + CGNG+R +L + R F + G Sbjct: 61 PELPEGVGADDWFMDYRNGDGSIAEMCGNGVRVFAHYLRATGLELRDEFVVGSRAGARPV 120 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 + + D+ + R+ + + +GNPH Sbjct: 121 HVHSADHVHGDVTVDM-------------GRVRELGTSTATVGGRVLEGIGIDVGNPHLA 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + L F EGVN+ I ++ +R ERGVG T +CG Sbjct: 168 CVDPDLTPASLASLDLTAAPGFDPGFFPEGVNIEILTALVDGAVQMRVHERGVGETRSCG 227 Query: 227 SAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + A+ VA+ + V V++ GG + + D + G + G++D Sbjct: 228 TGTVAAAVAALRAHGDADGKVEVRVPGGRVEVSV-DGGRAALRGPSMLVAAGRID 281 >gi|90961833|ref|YP_535749.1| diaminopimelate epimerase [Lactobacillus salivarius UCC118] gi|301301180|ref|ZP_07207336.1| diaminopimelate epimerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|122449030|sp|Q1WTU5|DAPF_LACS1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|90821027|gb|ABD99666.1| Diaminopimelate epimerase [Lactobacillus salivarius UCC118] gi|300851179|gb|EFK78907.1| diaminopimelate epimerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 325 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 125/311 (40%), Gaps = 30/311 (9%) Query: 6 VDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIHDFQDA 58 ++ K+ G GN ++D + + A D D ++ + Sbjct: 1 MEMLKVHGSGNDFFILDEDNLEEPLTEEELIQLAQKVCDRDTGLHGGADGVLYVQ-AGHE 59 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 D +R+IN DGSE CGNG+R V R+L+ + F +T + A + + Sbjct: 60 GTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQT----MHADLEVKKADKL 115 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLR-----NPFVVSMGNPHAIFFVED 173 P D ++ P++ + ++ V++ NPH I FV+ Sbjct: 116 AEKVPAFDAEISPVSFDAQDLLMHVGKEKLIDDYIPELSKAIKFSAVAVPNPHLIAFVDH 175 Query: 174 DL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + + +P+F +GVN+S + + +RT+ERGVG T ACG+A Sbjct: 176 ETLMGEELGRIASYLNNGNNPIFPDGVNVSFVEILEPGKIFVRTFERGVGFTNACGTAMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLL--IEWHDNNHVFMT--GEAKKEWEGKLDIK 282 AS + LH + ++V GG + + +N +M+ G A + + ++I Sbjct: 236 ASSLMYVLLHSDQIDFEKLITVINPGGMVRTMVHKRENGDYWMSLIGNATEVAK--VNIS 293 Query: 283 TGKWIKKNEDD 293 I N D+ Sbjct: 294 QADAINGNFDN 304 >gi|317012380|gb|ADU82988.1| diaminopimelate epimerase [Helicobacter pylori Lithuania75] Length = 273 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DIIP------ALRCEKFFTNDSVLENILTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +AS + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|157736415|ref|YP_001489098.1| diaminopimelate epimerase [Arcobacter butzleri RM4018] gi|157698269|gb|ABV66429.1| diaminopimelate epimerase [Arcobacter butzleri RM4018] Length = 246 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 99/276 (35%), Gaps = 38/276 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + K GN ++ + ++AI + + D +++ + D Sbjct: 1 MTYTKYSASGNDFIISHSF-IEKDYKAEAIKLCNRTEGIGADGFVVLVPS--SEADFKWL 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN R V + + + + G + Sbjct: 58 FYNSDGSDASMCGNATRAVTHYAYTNGLINTNQARFLTGAGI------------------ 99 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLAS 182 I D ++ +N F + F +V G PH + V+ DL Y+ Sbjct: 100 ----IKAVVENDIVETQLTKAKVINEEFSEDGFIWHLVDTGVPHLVTIVD-DLNLYNHEL 154 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241 + + N++ A++ + ++ +RT+ERGV T ACG+ AS + + L Sbjct: 155 CAKM-----RYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKL 208 Query: 242 TNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276 N V G L + +N ++ G KK + Sbjct: 209 VNDTTFVYPKSGEELTLSIK-DNTIYFKGAVKKVFT 243 >gi|58697432|ref|ZP_00372732.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila simulans] gi|58536143|gb|EAL59749.1| diaminopimelate epimerase [Wolbachia endosymbiont of Drosophila simulans] Length = 242 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 95/252 (37%), Positives = 137/252 (54%), Gaps = 17/252 (6%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 +ID +D + ++ + DQ+++I + A D F+ I N DGS+ + CGN Sbjct: 1 IIDSCSANDL--NWNYKKIANQN--GCDQVIVITNSSLA--DCFMHIYNADGSKAEMCGN 54 Query: 80 GMRCVVRFLTSRMKRKSFTFE-TIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDK 138 RCV L S + T E + IL + D SI V+MG+P+L W IPL+ D Sbjct: 55 AARCVGYLLMSEKGTEYITIELVNKRILECFKVGDKSIKVNMGKPLLKWHKIPLSTECDT 114 Query: 139 MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVN 198 + P+ L++P V++GNPH +FFV+ + L S G L H +F + +N Sbjct: 115 L------HLPIELEMLKDPVAVNIGNPHIVFFVD-SVNEIPLQSLGPKLENHALFPQKIN 167 Query: 199 LSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH-KTNRAVSVKMLGGGLLI 257 +SIA+V + LR WERG G+TA+CGSAACA++V S T + SV + GG LLI Sbjct: 168 ISIAQVEKSGEIALRVWERGTGITASCGSAACAALVTSTLRGYLTVQQTSVNLPGGKLLI 227 Query: 258 EWHDNNHVFMTG 269 EW N+VFMTG Sbjct: 228 EWA--NNVFMTG 237 >gi|260187742|ref|ZP_05765216.1| diaminopimelate epimerase [Mycobacterium tuberculosis CPHL_A] gi|289448381|ref|ZP_06438125.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] gi|289421339|gb|EFD18540.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CPHL_A] Length = 289 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60 M+ FAK G N +++ +T+ + AL D ++ + A Sbjct: 1 MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 59 Query: 61 -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 D ++ N DGS Q CGNG+R +L + E +V Sbjct: 60 LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 113 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 ++ E + + ++ + G H V +GNPH Sbjct: 114 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 168 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 169 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+ VA+ + ++V + GG +++ D F+ G + G L W Sbjct: 229 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTITDATS-FLRGPSVLVARGDL---ADDW 284 Query: 287 IKK 289 Sbjct: 285 WNA 287 >gi|213021465|ref|ZP_03335912.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 86 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAF 63 M+ F+KM G+GN +V+D + + + I LS FDQ++++ D +D Sbjct: 1 MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLT 89 RI N DGSEV CGNG RC R Sbjct: 61 YRIFNADGSEVSQCGNGARCFARICR 86 >gi|261839605|gb|ACX99370.1| diaminopimelate epimerase [Helicobacter pylori 52] Length = 273 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + ++F + +++ G PH + FVE L S L Sbjct: 120 DTIP------ALRCEKFFTNNSVLENIPTFYLIDTGVPHLVGFVE---NKEGLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +AS + + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASRIFYNMPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|222143275|pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Mycobacterium Tuberculosis Dapf Length = 290 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 104/304 (34%), Gaps = 34/304 (11%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV-- 60 M+ FAK G N +++ +T+ + AL D ++ + A Sbjct: 1 HMI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVG 59 Query: 61 ------------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA 108 D ++ N DGS Q CGNG+R +L + E +V Sbjct: 60 VLDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVG 113 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-- 166 ++ E + + ++ + G H V +GNPH Sbjct: 114 SLAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLA 168 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 + L + F +GVN+ + ++ +R ERGVG T +CG Sbjct: 169 CVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCG 228 Query: 227 SAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 + A+ VA+ + ++V + GG +++ D F+ G + G L Sbjct: 229 TGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADD 284 Query: 286 WIKK 289 W Sbjct: 285 WWNA 288 >gi|15611580|ref|NP_223231.1| diaminopimelate epimerase [Helicobacter pylori J99] gi|8134397|sp|Q9ZLR5|DAPF_HELPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|4155052|gb|AAD06089.1| DIAMINOPIMELATE EPIMERASE [Helicobacter pylori J99] Length = 273 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIVESNLGNYQIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + ++++ G PH + FV+ L S L Sbjct: 120 DTIP------NLRCKKFFTNNSVLENIPMFYLINTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ H T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARLFHNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G A+ Sbjct: 231 TLIPKSNEFLELSLKNDG-IFYKGVARYI 258 >gi|308061897|gb|ADO03785.1| diaminopimelate epimerase [Helicobacter pylori Cuz20] Length = 273 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 100/269 (37%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+I + ++ A + + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIIQSFKKK-DFSNLAKQVCNRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + ++F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCEKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPEKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258 >gi|255326354|ref|ZP_05367438.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296] gi|255296571|gb|EET75904.1| diaminopimelate epimerase [Rothia mucilaginosa ATCC 25296] Length = 311 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 98/292 (33%), Gaps = 29/292 (9%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDF-----------Q 56 K G GN + + +T + + A D + + Sbjct: 17 TKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKLLEE 76 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R V +L + + ET++ A Sbjct: 77 HPDAVWFMDYRNGDGSIAEMCGNGVRAFVEYLRTEGLVELEVGETVKIGTRAGVKTVART 136 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + W I + + + R +SMGNPH + + D Sbjct: 137 EEGYAIDMGPWSFI--HGEAAREGGEDCLVSARGLKTPRAGLSISMGNPHTVVMLGSDGK 194 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--------LDLRTWERGVGLTAACGSA 228 L +L +P G N+ L+ + +R ERGVG T +CG+ Sbjct: 195 LDGLD-LHSLPQVNPAPVNGTNVEFVVPVDLDVESGAQVGAIRMRVHERGVGETLSCGTG 253 Query: 229 ACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKE 274 ACA+ A+ + V + GG L + + D HV + G A+ Sbjct: 254 ACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQMV 305 >gi|240171197|ref|ZP_04749856.1| diaminopimelate epimerase [Mycobacterium kansasii ATCC 12478] Length = 290 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 106/307 (34%), Gaps = 38/307 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI----------- 52 M+ FAK G N +++ ++ + I AL D ++ + Sbjct: 1 MM-FAKGHGTENDFVLLPDIKAQLSLGTAQIAALCDRRRGLGADGVLRVTTAEAAAAAGV 59 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV 107 + D ++ N DGS Q CGNG+R +L + +R F ++ G Sbjct: 60 LDRLPDGVGAADWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLERRDEFVVGSLAGPRP 119 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH- 166 + + + D+ + I + V +GNPH Sbjct: 120 VTVHSVDASNADVTVDMGKANRIGTGTAV-------------VGGRRFPGLAVDVGNPHL 166 Query: 167 -AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 + L + F +GVN+ + + +R ERGVG T +C Sbjct: 167 ACLDPRLTVADLAALDVAAPVSFDPEQFPDGVNIEVLTAPVDGVVSMRVHERGVGETRSC 226 Query: 226 -GSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 A+V A ++V++ GG + + D F+ G + G++ +G Sbjct: 227 GTGTVAAAVAALAGAGAETGTLTVRVPGGDVAVTVTDATS-FLRGPSVLVATGEV---SG 282 Query: 285 KWIKKNE 291 +W + + Sbjct: 283 EWWRAQQ 289 >gi|308374674|ref|ZP_07436932.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] gi|308341146|gb|EFP29997.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu006] Length = 292 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60 M+ FAK G N +++ +T+ + AL D ++ + A Sbjct: 4 MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 62 Query: 61 -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 D ++ N DGS Q CGNG+R +L + E +V Sbjct: 63 LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 116 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 ++ E + + ++ + G H V +GNPH Sbjct: 117 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 171 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 172 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+ VA+ + ++V + GG +++ D F+ G + G L W Sbjct: 232 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADDW 287 Query: 287 IKK 289 Sbjct: 288 WNA 290 >gi|261838191|gb|ACX97957.1| diaminopimelate epimerase [Helicobacter pylori 51] Length = 273 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F + + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREIFICIEEPNIIESNLGNYQIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHAFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 ALIPKSNESLELSLK-NDEIFYKGAVRYI 258 >gi|254232826|ref|ZP_04926153.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308232226|ref|ZP_07415341.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308369841|ref|ZP_07419244.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] gi|308371113|ref|ZP_07423854.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003] gi|308373492|ref|ZP_07432514.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005] gi|308377111|ref|ZP_07441155.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008] gi|308378079|ref|ZP_07481445.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009] gi|308379298|ref|ZP_07485780.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010] gi|308380455|ref|ZP_07489998.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011] gi|308405951|ref|ZP_07494533.2| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012] gi|124601885|gb|EAY60895.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis C] gi|308214661|gb|EFO74060.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu001] gi|308326306|gb|EFP15157.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu002] gi|308329835|gb|EFP18686.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu003] gi|308337474|gb|EFP26325.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu005] gi|308348970|gb|EFP37821.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu008] gi|308353670|gb|EFP42521.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu009] gi|308357518|gb|EFP46369.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu010] gi|308361471|gb|EFP50322.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu011] gi|308365066|gb|EFP53917.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu012] gi|323718719|gb|EGB27881.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis CDC1551A] Length = 292 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60 M+ FAK G N +++ +T+ + AL D ++ + A Sbjct: 4 MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 62 Query: 61 -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 D ++ N DGS Q CGNG+R +L + E +V Sbjct: 63 LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 116 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 ++ E + + ++ + G H V +GNPH Sbjct: 117 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 171 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 172 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 231 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+ VA+ + ++V + GG +++ D F+ G + G L W Sbjct: 232 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADDW 287 Query: 287 IKK 289 Sbjct: 288 WNA 290 >gi|15609863|ref|NP_217242.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Rv] gi|15842264|ref|NP_337301.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31793898|ref|NP_856391.1| diaminopimelate epimerase [Mycobacterium bovis AF2122/97] gi|121638601|ref|YP_978825.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662567|ref|YP_001284090.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|148823914|ref|YP_001288668.1| diaminopimelate epimerase [Mycobacterium tuberculosis F11] gi|167967448|ref|ZP_02549725.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|215404690|ref|ZP_03416871.1| diaminopimelate epimerase [Mycobacterium tuberculosis 02_1987] gi|215412531|ref|ZP_03421265.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|215428155|ref|ZP_03426074.1| diaminopimelate epimerase [Mycobacterium tuberculosis T92] gi|215431662|ref|ZP_03429581.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|215446978|ref|ZP_03433730.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|218754461|ref|ZP_03533257.1| diaminopimelate epimerase [Mycobacterium tuberculosis GM 1503] gi|219558734|ref|ZP_03537810.1| diaminopimelate epimerase [Mycobacterium tuberculosis T17] gi|224991093|ref|YP_002645782.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798193|ref|YP_003031194.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 1435] gi|254365381|ref|ZP_04981426.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str. Haarlem] gi|254551781|ref|ZP_05142228.1| diaminopimelate epimerase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260201850|ref|ZP_05769341.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|260206034|ref|ZP_05773525.1| diaminopimelate epimerase [Mycobacterium tuberculosis K85] gi|289444268|ref|ZP_06434012.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|289553490|ref|ZP_06442700.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605] gi|289570902|ref|ZP_06451129.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17] gi|289575423|ref|ZP_06455650.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85] gi|289746528|ref|ZP_06505906.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987] gi|289751380|ref|ZP_06510758.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92] gi|289754829|ref|ZP_06514207.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|289758854|ref|ZP_06518232.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|289762897|ref|ZP_06522275.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503] gi|294994184|ref|ZP_06799875.1| diaminopimelate epimerase [Mycobacterium tuberculosis 210] gi|297635333|ref|ZP_06953113.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN 4207] gi|297732329|ref|ZP_06961447.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN R506] gi|298526195|ref|ZP_07013604.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|306790128|ref|ZP_07428450.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004] gi|306807474|ref|ZP_07444142.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007] gi|313659662|ref|ZP_07816542.1| diaminopimelate epimerase [Mycobacterium tuberculosis KZN V2475] gi|54036946|sp|P63898|DAPF_MYCBO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|54040932|sp|P63897|DAPF_MYCTU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225732|sp|A1KM64|DAPF_MYCBP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|166225736|sp|A5U678|DAPF_MYCTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767116|sp|C1AFI5|DAPF_MYCBT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|2292960|emb|CAB10902.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) [Mycobacterium tuberculosis H37Rv] gi|13882556|gb|AAK47115.1| diaminopimelate epimerase [Mycobacterium tuberculosis CDC1551] gi|31619492|emb|CAD94930.1| PROBABLE DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) [Mycobacterium bovis AF2122/97] gi|121494249|emb|CAL72727.1| Probable diaminopimelate epimerase dapF [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150894|gb|EBA42939.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis str. Haarlem] gi|148506719|gb|ABQ74528.1| diaminopimelate epimerase [Mycobacterium tuberculosis H37Ra] gi|148722441|gb|ABR07066.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis F11] gi|224774208|dbj|BAH27014.1| diaminopimelate epimerase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319696|gb|ACT24299.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 1435] gi|289417187|gb|EFD14427.1| diaminopimelate epimerase [Mycobacterium tuberculosis T46] gi|289438122|gb|EFD20615.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 605] gi|289539854|gb|EFD44432.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis K85] gi|289544656|gb|EFD48304.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T17] gi|289687056|gb|EFD54544.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis 02_1987] gi|289691967|gb|EFD59396.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis T92] gi|289695416|gb|EFD62845.1| diaminopimelate epimerase [Mycobacterium tuberculosis EAS054] gi|289710403|gb|EFD74419.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis GM 1503] gi|289714418|gb|EFD78430.1| diaminopimelate epimerase [Mycobacterium tuberculosis T85] gi|298495989|gb|EFI31283.1| diaminopimelate epimerase [Mycobacterium tuberculosis 94_M4241A] gi|308333478|gb|EFP22329.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu004] gi|308346069|gb|EFP34920.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis SUMu007] gi|326904341|gb|EGE51274.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis W-148] gi|328457966|gb|AEB03389.1| diaminopimelate epimerase dapF [Mycobacterium tuberculosis KZN 4207] Length = 289 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 104/303 (34%), Gaps = 34/303 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV--- 60 M+ FAK G N +++ +T+ + AL D ++ + A Sbjct: 1 MI-FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGV 59 Query: 61 -----------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 D ++ N DGS Q CGNG+R +L + E +V Sbjct: 60 LDSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASG------LEVRDEFVVGS 113 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--A 167 ++ E + + ++ + G H V +GNPH Sbjct: 114 LAGPRPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFH-----GLAVDVGNPHLAC 168 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGS 227 + L + F +GVN+ + ++ +R ERGVG T +CG+ Sbjct: 169 VDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCGT 228 Query: 228 AACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 A+ VA+ + ++V + GG +++ D F+ G + G L W Sbjct: 229 GTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVTDATS-FLRGPSVLVARGDL---ADDW 284 Query: 287 IKK 289 Sbjct: 285 WNA 287 >gi|317181881|dbj|BAJ59665.1| diaminopimelate epimerase [Helicobacter pylori F57] Length = 273 Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L++ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIVQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCKKFFTNDSVLENIPTFYLIDTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINIAFIENKKTIFLQTYERGVEDFTLACGTGMAAVFIAACIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|213964457|ref|ZP_03392657.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46] gi|213952650|gb|EEB64032.1| diaminopimelate epimerase [Corynebacterium amycolatum SK46] Length = 307 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 112/308 (36%), Gaps = 29/308 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLI----------- 52 MV FAK G N L+ +T + A+ D ++ + Sbjct: 1 MVSFAKGHGTQNDFLIFPDDLVSIELTESLVAAVCDRQRGLGADGVLRVARAGKLVDAGV 60 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-----SFTFETIRG 104 + D F+ N DGS + CGNG+R ++ + + T G Sbjct: 61 LTALPEGVKADDWFMDYRNSDGSIAEMCGNGVRVFGHYIAAIHSPDSVVDGTLRVGTRAG 120 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + +G + +++ LA +F + + M Sbjct: 121 LRAVSIDELSRRHAVVGVNMGQPEVLGLATAFIGSGNNALKFAGIGVDVGNPHLACVMPG 180 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGVGLTA 223 A E +L + + A MF G+NL I +S+ +R ERGVG T Sbjct: 181 LSAAGLAELELEAAG-SVAKPVRADEAMFPNGLNLEIVTPLDASDSVSMRVIERGVGETR 239 Query: 224 ACGSAAC-ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH------VFMTGEAKKEWE 276 +CG+ A++ A +T AV+VK+ GG + ++ H ++ +TG + Sbjct: 240 SCGTGTVAAAIAALADAGRTEGAVTVKVSGGVVTVDVHKASNADGAFSATLTGPSVIHTL 299 Query: 277 GKLDIKTG 284 G ++++ Sbjct: 300 GDIELEAL 307 >gi|315635549|ref|ZP_07890815.1| diaminopimelate epimerase [Arcobacter butzleri JV22] gi|315480307|gb|EFU70974.1| diaminopimelate epimerase [Arcobacter butzleri JV22] Length = 246 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 99/276 (35%), Gaps = 38/276 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + + K GN ++ D T +AI + + D +++ ++ D Sbjct: 1 MTYTKYSASGNDFIISHSFIEKDYKT-EAIKLCNRTEGIGADGFVVLVP--NSEADFKWL 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS+ CGN R V + + + G + Sbjct: 58 FYNSDGSDASMCGNATRAVTHYAYTNGLITRNQARFLTGAGI------------------ 99 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLAS 182 I D ++ +N F + F +V G PH + V+ DL Y+ Sbjct: 100 ----IKAVVENDIVETQLTKAKVINEEFSEDGFIWHLVDTGVPHLVTIVD-DLNLYNHEL 154 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241 + + N++ A++ + ++ +RT+ERGV T ACG+ AS + + L Sbjct: 155 CAKM-----RYKYNANVNFAKIENK-TIKVRTYERGVEGETLACGTGMAASFLRANSLKL 208 Query: 242 TNRAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276 N V G L + +N ++ G KK + Sbjct: 209 VNDTTFVYPKSGEELTLSIK-DNTIYFKGAVKKVFT 243 >gi|298736257|ref|YP_003728783.1| Diaminopimelate epimerase [Helicobacter pylori B8] gi|298355447|emb|CBI66319.1| Diaminopimelate epimerase [Helicobacter pylori B8] Length = 273 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKR-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F + ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP R + D + +++ G PH + FV+ L S L Sbjct: 120 DTIPALRCKNFFSSDSVL------EHISTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAARIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 ALIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|313681232|ref|YP_004058970.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994] gi|313154092|gb|ADR32770.1| diaminopimelate epimerase [Sulfuricurvum kujiense DSM 16994] Length = 249 Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 34/278 (12%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ AK GN ++ D + A + D ++++ + D Sbjct: 1 MLQIAKYCASGNDFVIFHAFEKADR-SQLARILCDRQNGIGADGLIVLVPHES--HDFEW 57 Query: 65 RIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 N DGS CGNG R + + S F T G++ A + D+ P Sbjct: 58 EFYNADGSTASMCGNGSRACAHYAHRFGLAPSSMAFLTGAGVIKAHVEG-DMVQSDLTPP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ + I +++ G PH I F D+ F Sbjct: 117 VIVNQEI--------------------VESGMKWWLIDTGVPHLITF------DADIEHF 150 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKT 242 LA+ N++IA + +L +RT+ERGV T ACG+ AS + Sbjct: 151 NIDLARTLRHRYNANVNIASINLDGTLRVRTYERGVEDETLACGTGMAASFYRAVQERLV 210 Query: 243 NRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKL 279 + V G L + + + + GE K +E Sbjct: 211 DENTKVFPKSGETLYLGFEE-GVITFKGEVKGVFETTW 247 >gi|229547649|ref|ZP_04436374.1| diaminopimelate epimerase [Enterococcus faecalis TX1322] gi|256852437|ref|ZP_05557813.1| diaminopimelate epimerase [Enterococcus faecalis T8] gi|229307141|gb|EEN73128.1| diaminopimelate epimerase [Enterococcus faecalis TX1322] gi|256712291|gb|EEU27323.1| diaminopimelate epimerase [Enterococcus faecalis T8] gi|315028527|gb|EFT40459.1| diaminopimelate epimerase [Enterococcus faecalis TX4000] Length = 326 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEKITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|257415181|ref|ZP_05592175.1| diaminopimelate epimerase [Enterococcus faecalis AR01/DG] gi|257157009|gb|EEU86969.1| diaminopimelate epimerase [Enterococcus faecalis ARO1/DG] Length = 326 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPSLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|111023735|ref|YP_706707.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] gi|122955072|sp|Q0S1N7|DAPF_RHOSR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|110823265|gb|ABG98549.1| diaminopimelate epimerase [Rhodococcus jostii RHA1] Length = 289 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 30/293 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 +DF+K G N +V+ ++++ + AL D I+ + Sbjct: 1 MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAGAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + D F+ N DGS + CGNG+R +L + E+ +V Sbjct: 61 AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRAAG------LESRDEFVVGSR 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168 + V + + + + RD + N + +GNPH + Sbjct: 115 AGGKPVIVHSADGAFGEVTVDMG-----VVRDLGTSAATIDGKVFNGIGIDVGNPHLACV 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L F GVN+ I ++D+R ERGVG T +CG+ Sbjct: 170 DAHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSCGTG 229 Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ A+ + V+V++ GG + + + G + G LD Sbjct: 230 TVAAATAALRFDGADSGEVNVRIPGGQVTVAVS-GGRATLRGPSVLVASGTLD 281 >gi|307637249|gb|ADN79699.1| Diaminopimelate epimerase [Helicobacter pylori 908] gi|325995841|gb|ADZ51246.1| Diaminopimelate epimerase [Helicobacter pylori 2018] gi|325997435|gb|ADZ49643.1| Diaminopimelate epimerase [Helicobacter pylori 2017] Length = 273 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLIAQSFKKK-DFSNLAQQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHNIAPKEHVFLAGKREISIRIEEPNIVESNLGNYEIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + ++++ G PH + FV+ L S L Sbjct: 120 DTIP------NLRCKKFFSNDSVLENIPMFYLINTGVPHLVGFVK---NKGLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +A+ H T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIAACLFHNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G A+ Sbjct: 231 TLIPKSNEFLELSLK-NDEIFYKGVARYI 258 >gi|229548389|ref|ZP_04437114.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200] gi|255971017|ref|ZP_05421603.1| diaminopimelate epimerase [Enterococcus faecalis T1] gi|257088960|ref|ZP_05583321.1| diaminopimelate epimerase [Enterococcus faecalis CH188] gi|257420743|ref|ZP_05597733.1| diaminopimelate epimerase [Enterococcus faecalis X98] gi|312904838|ref|ZP_07763978.1| diaminopimelate epimerase [Enterococcus faecalis TX0635] gi|229306605|gb|EEN72601.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 29200] gi|255962035|gb|EET94511.1| diaminopimelate epimerase [Enterococcus faecalis T1] gi|256997772|gb|EEU84292.1| diaminopimelate epimerase [Enterococcus faecalis CH188] gi|257162567|gb|EEU92527.1| diaminopimelate epimerase [Enterococcus faecalis X98] gi|310631844|gb|EFQ15127.1| diaminopimelate epimerase [Enterococcus faecalis TX0635] gi|315155010|gb|EFT99026.1| diaminopimelate epimerase [Enterococcus faecalis TX0043] gi|315158773|gb|EFU02790.1| diaminopimelate epimerase [Enterococcus faecalis TX0312] gi|315161030|gb|EFU05047.1| diaminopimelate epimerase [Enterococcus faecalis TX0645] gi|315576506|gb|EFU88697.1| diaminopimelate epimerase [Enterococcus faecalis TX0630] Length = 326 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPSLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|226366172|ref|YP_002783955.1| diaminopimelate epimerase [Rhodococcus opacus B4] gi|254767119|sp|C1B393|DAPF_RHOOB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|226244662|dbj|BAH55010.1| diaminopimelate epimerase [Rhodococcus opacus B4] Length = 289 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 30/293 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 +DF+K G N +V+ ++++ + AL D I+ + Sbjct: 1 MDFSKGHGTENDFVVLPDPDVRIDLSAPRVAALCDRRRGLGADGILRVAKAGALAAAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + D F+ N DGS + CGNG+R +L S ET +V Sbjct: 61 AELPDGTSEDDWFMDYRNADGSIAEMCGNGVRVFAHYLRSTG------LETRDEFVVGSR 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168 + V + + + + RD + N + +GNPH + Sbjct: 115 AGGKPVIVHSADGSAGEVTVDMG-----VVRDLGTSAATIDGKVFNGIGIDVGNPHLACV 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L F GVN+ I ++D+R ERGVG T +CG+ Sbjct: 170 DAHLTAASLSALDLTAAPGFDPGFFPHGVNVEILTRIDSGAVDMRVHERGVGETRSCGTG 229 Query: 229 ACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 A+ A+ + V V++ GG + + + G + G LD Sbjct: 230 TVAAATAALRFDGADSGEVKVRIPGGQVTVALS-GGRATLRGPSVLVASGNLD 281 >gi|152989854|ref|YP_001355576.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2] gi|166225739|sp|A6Q160|DAPF_NITSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|151421715|dbj|BAF69219.1| diaminopimelate epimerase [Nitratiruptor sp. SB155-2] Length = 250 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 108/284 (38%), Gaps = 37/284 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K GN ++ D + A + D ++++ + D + Sbjct: 1 MQLVKYSASGNDFVIYHTFVKKDR-SELAKLLCHRHEGIGADGLIVLLPH--SRYDFEWQ 57 Query: 66 IINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSE + CGNG R + + + K F T+ G++ A + + +P Sbjct: 58 FYNADGSEAEMCGNGSRAAAHYAYSYGLASKQMRFLTLAGVIEASVEA-DVVESQLTKPK 116 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + I + +++ G PH + FVED L F Sbjct: 117 ILDRKI--------------------EENGKRWWLIDTGVPHLVTFVED------LNQFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 +K N++ + LE++ +RT+ERGV T ACG+ A+ + + N Sbjct: 151 KNESKRLRNKYNANVNYGIIRDLENVGVRTYERGVEDETLACGTGMAATFLRAFEEGVVN 210 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 V+V G L + + +N +F G KK +E K G W Sbjct: 211 PTVTVVPKSGEELQLRY-ENEKLFFKGRVKKVFE---TFKEGIW 250 >gi|118465575|ref|YP_882796.1| diaminopimelate epimerase [Mycobacterium avium 104] gi|166225731|sp|A0QIQ8|DAPF_MYCA1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|118166862|gb|ABK67759.1| diaminopimelate epimerase [Mycobacterium avium 104] Length = 294 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 108/303 (35%), Gaps = 27/303 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +++ +T+ + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVLLCDTPAELRLTAAGVAALCDRRRGLGADGVLRVTTAGAAAAAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A D ++ N DGS Q CGNG+R +L + ET +V Sbjct: 61 DRLPDGVAGDDWYMDYRNSDGSVAQMCGNGVRVFAHYLRASG------LETRDEFVVGSL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++V + + + ++ + V V A Sbjct: 115 AGPRPVTVHAADATGADVSVDMGKANTLGSGGKAFEATVGGRRFAGLAVDVGNPHLACLD 174 Query: 171 VEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 E + ++ F +GVN+ + + + +R ERGVG T +CG+ Sbjct: 175 PELSVDELAALDVAAPVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGTGT 234 Query: 230 CASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 A+ VA+ + ++V++ GG +++ D ++ G + G++ + +W + Sbjct: 235 VAAAVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEWWQ 290 Query: 289 KNE 291 + + Sbjct: 291 QAQ 293 >gi|257083545|ref|ZP_05577906.1| diaminopimelate epimerase [Enterococcus faecalis Fly1] gi|256991575|gb|EEU78877.1| diaminopimelate epimerase [Enterococcus faecalis Fly1] Length = 326 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|256957635|ref|ZP_05561806.1| diaminopimelate epimerase [Enterococcus faecalis DS5] gi|257080128|ref|ZP_05574489.1| diaminopimelate epimerase [Enterococcus faecalis JH1] gi|294780698|ref|ZP_06746059.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1] gi|307268574|ref|ZP_07549946.1| diaminopimelate epimerase [Enterococcus faecalis TX4248] gi|256948131|gb|EEU64763.1| diaminopimelate epimerase [Enterococcus faecalis DS5] gi|256988158|gb|EEU75460.1| diaminopimelate epimerase [Enterococcus faecalis JH1] gi|294452308|gb|EFG20749.1| diaminopimelate epimerase [Enterococcus faecalis PC1.1] gi|306515063|gb|EFM83606.1| diaminopimelate epimerase [Enterococcus faecalis TX4248] gi|315032252|gb|EFT44184.1| diaminopimelate epimerase [Enterococcus faecalis TX0017] gi|315035538|gb|EFT47470.1| diaminopimelate epimerase [Enterococcus faecalis TX0027] gi|329575057|gb|EGG56609.1| diaminopimelate epimerase [Enterococcus faecalis TX1467] Length = 326 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S V L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEVLGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|257085818|ref|ZP_05580179.1| diaminopimelate epimerase [Enterococcus faecalis D6] gi|256993848|gb|EEU81150.1| diaminopimelate epimerase [Enterococcus faecalis D6] gi|315026272|gb|EFT38204.1| diaminopimelate epimerase [Enterococcus faecalis TX2137] gi|315149443|gb|EFT93459.1| diaminopimelate epimerase [Enterococcus faecalis TX0012] Length = 326 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L+ + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|294791045|ref|ZP_06756203.1| diaminopimelate epimerase [Scardovia inopinata F0304] gi|294458942|gb|EFG27295.1| diaminopimelate epimerase [Scardovia inopinata F0304] Length = 342 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 123/318 (38%), Gaps = 35/318 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRG-----CHDNITSDAINALSTDDNT--HFDQIMLIHDFQD 57 M+ K++G GN ++D + ++ A+ D I+ + Sbjct: 1 MITLEKVQGSGNSFFLLDQDLLPSALNENELSRLALALCPRKTGLTGGADGILAVTASPT 60 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGILVAKENRD 113 S I +IN DGS+ CGNG+R V R+L K T + + N Sbjct: 61 PS----IHVINADGSQASMCGNGLRTVARYLHDHYGFGQEGKRDTIDGSFHVSTLNANLQ 116 Query: 114 GSISVDMGE--PILDWKLIPLARSFDKMD------RDRFHIGPVNHLFLRNPFVVSMGNP 165 + P ++ P++ + + L +S+ NP Sbjct: 117 VRSVGNFAPGLPAYSVEISPVSFDSRSLPFTNLGRNRLINCSVPELLPDLRFTALSVPNP 176 Query: 166 HAIFFVEDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 H + F+ D DL S L + +P F GVN++ A + +L +RT+ERGVGLT Sbjct: 177 HVVSFMTQDQVQSDLLSSLGNRLNSPNPYFPNGVNVNFAHILGRNTLYVRTFERGVGLTN 236 Query: 224 ACGSAACASVVASGC----LHKTNRAVSVKMLGGGLL--IEWHDNN---HVFMTGEAKKE 274 ACG+ A+ + + + N+ ++V GG + + + + + + G A Sbjct: 237 ACGTGMSAASLCLVLTHPQMGEANQEITVYNPGGMVKTRVHYQEEEGTYTINLIGNATVT 296 Query: 275 WEGKLDIKTGKWIKKNED 292 +LD ++ + + Sbjct: 297 HLIELD-ESCLYHPPAQG 313 >gi|149194724|ref|ZP_01871819.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2] gi|149135147|gb|EDM23628.1| diaminopimelate epimerase [Caminibacter mediatlanticus TB-2] Length = 241 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 39/269 (14%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN ++ D ++ A + D ++++ + + D + N Sbjct: 5 KYSASGNDFVIFHTFKKKDR-SNLAKKLCDRFNGIGADGLIVLLPHK--TYDFEWQFYNA 61 Query: 70 DGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKL 129 DGSE CGNG R + S + + G V + DG I P + Sbjct: 62 DGSEASMCGNGSRAAA-LYAYKYDLASSKMKFLTGAGVIEAEVDGDIVETQLTPYKELGK 120 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 + G PH + + L ++++ L Sbjct: 121 ------------------------FDEWELFDTGVPHLVKLDK--LENFNINECREL--- 151 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSV 248 + N++IA V L +RT+ERGV T ACG+ CAS + + ++ V Sbjct: 152 --RYKHNANVNIAEVKD-NKLFVRTYERGVEDETLACGTGMCASFLKARKEGLIGDSIKV 208 Query: 249 KMLGG-GLLIEWHDNNHVFMTGEAKKEWE 276 L I N ++ G K+ ++ Sbjct: 209 YPKSKEELEISLKRN-RLYFKGRVKETFK 236 >gi|256959657|ref|ZP_05563828.1| diaminopimelate epimerase [Enterococcus faecalis Merz96] gi|293384849|ref|ZP_06630692.1| diaminopimelate epimerase [Enterococcus faecalis R712] gi|293389139|ref|ZP_06633606.1| diaminopimelate epimerase [Enterococcus faecalis S613] gi|312908147|ref|ZP_07767125.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512] gi|312979083|ref|ZP_07790798.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516] gi|256950153|gb|EEU66785.1| diaminopimelate epimerase [Enterococcus faecalis Merz96] gi|291077853|gb|EFE15217.1| diaminopimelate epimerase [Enterococcus faecalis R712] gi|291081510|gb|EFE18473.1| diaminopimelate epimerase [Enterococcus faecalis S613] gi|310625855|gb|EFQ09138.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 512] gi|311288117|gb|EFQ66673.1| diaminopimelate epimerase [Enterococcus faecalis DAPTO 516] Length = 326 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIASYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|227519126|ref|ZP_03949175.1| diaminopimelate epimerase [Enterococcus faecalis TX0104] gi|256761385|ref|ZP_05501965.1| diaminopimelate epimerase [Enterococcus faecalis T3] gi|257080861|ref|ZP_05575222.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol] gi|257418236|ref|ZP_05595230.1| diaminopimelate epimerase [Enterococcus faecalis T11] gi|312952100|ref|ZP_07770981.1| diaminopimelate epimerase [Enterococcus faecalis TX0102] gi|227073474|gb|EEI11437.1| diaminopimelate epimerase [Enterococcus faecalis TX0104] gi|256682636|gb|EEU22331.1| diaminopimelate epimerase [Enterococcus faecalis T3] gi|256988891|gb|EEU76193.1| diaminopimelate epimerase [Enterococcus faecalis E1Sol] gi|257160064|gb|EEU90024.1| diaminopimelate epimerase [Enterococcus faecalis T11] gi|295114168|emb|CBL32805.1| diaminopimelate epimerase [Enterococcus sp. 7L76] gi|310629882|gb|EFQ13165.1| diaminopimelate epimerase [Enterococcus faecalis TX0102] gi|315153948|gb|EFT97964.1| diaminopimelate epimerase [Enterococcus faecalis TX0031] gi|315166228|gb|EFU10245.1| diaminopimelate epimerase [Enterococcus faecalis TX1302] gi|315170817|gb|EFU14834.1| diaminopimelate epimerase [Enterococcus faecalis TX1342] gi|327534202|gb|AEA93036.1| diaminopimelate epimerase [Enterococcus faecalis OG1RF] Length = 326 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|256963232|ref|ZP_05567403.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704] gi|300861745|ref|ZP_07107825.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11] gi|307272274|ref|ZP_07553534.1| diaminopimelate epimerase [Enterococcus faecalis TX0855] gi|312900206|ref|ZP_07759518.1| diaminopimelate epimerase [Enterococcus faecalis TX0470] gi|256953728|gb|EEU70360.1| diaminopimelate epimerase [Enterococcus faecalis HIP11704] gi|300848270|gb|EFK76027.1| diaminopimelate epimerase [Enterococcus faecalis TUSoD Ef11] gi|306511163|gb|EFM80173.1| diaminopimelate epimerase [Enterococcus faecalis TX0855] gi|311292567|gb|EFQ71123.1| diaminopimelate epimerase [Enterococcus faecalis TX0470] gi|315167722|gb|EFU11739.1| diaminopimelate epimerase [Enterococcus faecalis TX1341] gi|323479602|gb|ADX79041.1| diaminopimelate epimerase [Enterococcus faecalis 62] Length = 326 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|208434486|ref|YP_002266152.1| diaminopimelate epimerase [Helicobacter pylori G27] gi|229807495|sp|B5Z6T7|DAPF_HELPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|208432415|gb|ACI27286.1| diaminopimelate epimerase [Helicobacter pylori G27] Length = 272 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISIRIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALRCKKFFTNDSVLENILTFYLIDTGVPHLVGFVK---NKKLLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + E++ L+T+ERGV T ACG+ A +AS + T + Sbjct: 171 LRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFIASHIFYNTPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 + L + ++ +F G + Sbjct: 231 ILIPKSNESLELSLKNDG-IFYKGAVRYI 258 >gi|283458472|ref|YP_003363098.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18] gi|283134513|dbj|BAI65278.1| diaminopimelate epimerase [Rothia mucilaginosa DY-18] Length = 311 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 100/296 (33%), Gaps = 33/296 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54 K G GN + + +T + + A D + LI Sbjct: 17 TKGHGTGNDFIFLTDENAEIALTPELVARACDRHFGIGADGFIRAARSTASRAGQKLIE- 75 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + F+ N DGS + CGNG+R V +L + + ET++ A Sbjct: 76 -EHPDAVWFMDYRNGDGSVAEMCGNGVRAFVEYLRTEGLIELEVGETVKIGTRAGVKTVA 134 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + W I + + + R +SMGNPH + + + Sbjct: 135 RTEEGYAIDMGPWSFI--HGDAAREGGEDCLVSARGLKTPRAGLSISMGNPHTVVMLGSE 192 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES--------LDLRTWERGVGLTAACG 226 L +L +P G N+ L+ + +R ERGVG T +CG Sbjct: 193 GKLDGLD-LHSLPQVNPAPVNGTNVEFVVPVDLDVESGAHVGAIRMRVHERGVGETLSCG 251 Query: 227 SAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWE 276 + ACA+ A+ + V + GG L + + D HV + G A+ Sbjct: 252 TGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQMVAT 307 >gi|256617382|ref|ZP_05474228.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200] gi|307275562|ref|ZP_07556703.1| diaminopimelate epimerase [Enterococcus faecalis TX2134] gi|307290622|ref|ZP_07570530.1| diaminopimelate epimerase [Enterococcus faecalis TX0411] gi|256596909|gb|EEU16085.1| diaminopimelate epimerase [Enterococcus faecalis ATCC 4200] gi|306498336|gb|EFM67845.1| diaminopimelate epimerase [Enterococcus faecalis TX0411] gi|306507667|gb|EFM76796.1| diaminopimelate epimerase [Enterococcus faecalis TX2134] gi|315143988|gb|EFT88004.1| diaminopimelate epimerase [Enterococcus faecalis TX2141] Length = 326 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPSLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ ++ +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDDSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|23012042|ref|ZP_00052226.1| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 173 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 81/170 (47%), Positives = 102/170 (60%), Gaps = 2/170 (1%) Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 V MG+P L W IPLA F R +GP++ L +P VSMGNPHAIFFVE D Sbjct: 1 HVYMGQPRLRWDEIPLAEPFPDTRRIELQVGPIDDPILHSPAAVSMGNPHAIFFVERDPD 60 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 YDL G LL HP+F E N+SIA+VT +++ LR WERG GLT ACG+AACA+ VA+ Sbjct: 61 TYDLGRIGPLLEAHPIFPERANISIAQVTGRDTIKLRVWERGAGLTLACGTAACATAVAA 120 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL--DIKTG 284 L R+ + + GG L IEW ++HV MTG E EG ++ G Sbjct: 121 SRLRLIGRSARIALPGGELAIEWRADDHVLMTGPVFLEGEGSFAPELFAG 170 >gi|315173875|gb|EFU17892.1| diaminopimelate epimerase [Enterococcus faecalis TX1346] Length = 326 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 134/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L+ + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLSEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATVTHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|307288825|ref|ZP_07568803.1| diaminopimelate epimerase [Enterococcus faecalis TX0109] gi|306500294|gb|EFM69633.1| diaminopimelate epimerase [Enterococcus faecalis TX0109] Length = 326 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHW 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|29375095|ref|NP_814248.1| diaminopimelate epimerase [Enterococcus faecalis V583] gi|227553830|ref|ZP_03983879.1| diaminopimelate epimerase [Enterococcus faecalis HH22] gi|81585476|sp|Q838I3|DAPF_ENTFA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|29342554|gb|AAO80319.1| diaminopimelate epimerase [Enterococcus faecalis V583] gi|227177083|gb|EEI58055.1| diaminopimelate epimerase [Enterococcus faecalis HH22] gi|315574927|gb|EFU87118.1| diaminopimelate epimerase [Enterococcus faecalis TX0309B] gi|315582374|gb|EFU94565.1| diaminopimelate epimerase [Enterococcus faecalis TX0309A] Length = 326 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNTGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|210134767|ref|YP_002301206.1| diaminopimelate epimerase [Helicobacter pylori P12] gi|229807494|sp|B6JLE8|DAPF_HELP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|210132735|gb|ACJ07726.1| diaminopimelate epimerase [Helicobacter pylori P12] Length = 272 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 97/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVIVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------NLRCKKFFTNNSVLENILTFYLIDTGVPHLVGFVK---NKEWLNSLNTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + E++ L+T+ERGV T ACG+ A +A+ + + Sbjct: 171 LRALRHAFNANINIAFIENEETIFLQTYERGVEDFTLACGTGMAAVFIAARLFYNAPKKA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + ++ +F G + Sbjct: 231 TLIPKSNESLELSLKNDG-IFYKGIVRYI 258 >gi|293375092|ref|ZP_06621382.1| diaminopimelate epimerase [Turicibacter sanguinis PC909] gi|292646286|gb|EFF64306.1| diaminopimelate epimerase [Turicibacter sanguinis PC909] Length = 277 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 14/276 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ +GN L+I++ + + A+ D I+++ A D + Sbjct: 6 FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS ++CGNG+R + R+L + ++ D + Sbjct: 64 MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKDVITVDLGLA 123 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 P K D ++ + ++SMGNPH I + ++D + + Sbjct: 124 HMLTE-PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTFYEEMGR 182 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT-- 242 VN+ + V + L L T+ERG G T ACG+ A+V ++ + Sbjct: 183 LSKRY------DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQVLP 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 N + V + GG L ++W N+H+ +G+ K G Sbjct: 237 NEIIKVYLPGGILEVKWDLNDHLLASGKTTKVCCGT 272 >gi|227488716|ref|ZP_03919032.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542287|ref|ZP_03972336.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091138|gb|EEI26450.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181948|gb|EEI62920.1| diaminopimelate epimerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 278 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 93/275 (33%), Gaps = 20/275 (7%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASV----DAFI 64 K G N +++ T + + AL D ++ + +D + D F+ Sbjct: 13 KGHGTENDFVILVDTDNCLAPTPEEVAALCDRHAGIGADGLLRVVRARDINASSAADWFM 72 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKENRDGSISVDMGE 122 N DGS + CGNGMR +L K K F T G + + D+ Sbjct: 73 DYRNADGSVAEMCGNGMRVFAHYLVVSGLEKEKEFLVGTRAGDKHVTVHAADERTADVSV 132 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + ++ F V + I L Sbjct: 133 EMGEASVTGVS-----------TCVLGQTTFAGLGVDVGNPHLACIIPTLTKDQLEALPI 181 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVASGCLHK 241 F GVN+ IA ++ +R ERGVG T +CG+ +V A Sbjct: 182 QDGFAVDTEFFPAGVNVEIATELVDGAVYMRVNERGVGETRSCGTGTVATAVAALADAGL 241 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + V+V +LGG + + + + G ++ + Sbjct: 242 ADGTVAVHVLGGTVQVTVK-DGKAALRGPSEIVFR 275 >gi|229820924|ref|YP_002882450.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333] gi|229566837|gb|ACQ80688.1| diaminopimelate epimerase [Beutenbergia cavernae DSM 12333] Length = 309 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 99/299 (33%), Gaps = 34/299 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF-----------Q 56 K G GN L++ +T + ALS D ++ + Sbjct: 10 VKGHGTGNDFLLLADPEGALALTEADVAALSDRHRGLGADGVIRAVRSSAIADGASLLEE 69 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R V FL + + + + A Sbjct: 70 HPEAVWFMDYRNADGSLAEMCGNGIRVFVEFLRAEGLLDAEDGDVVPVATRAGVLPVRIE 129 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + + W A + + + ++ R +++ NPH + +E D+ Sbjct: 130 TDRYAVDMGRWSAPGGAEALEAGFDASVGVAGLDSP--RPGLRLALPNPHVVVALE-DVA 186 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESL-----------------DLRTWERGV 219 + P+ G N+ + + +R ERGV Sbjct: 187 QLESIDLTKPPRVDPLGEGGTNVELVVALGEQRFDADGTPNAEGERVVGIVRMRVHERGV 246 Query: 220 GLTAACGSAACASVVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 G T +CG+ ACA+ +A V + GG L + +HV ++G A+ Sbjct: 247 GETLSCGTGACAAALAVRAWAGAGAPDEWLVLVPGGQLQVRVLPEDHVELSGPAELVAR 305 >gi|325841298|ref|ZP_08167399.1| diaminopimelate epimerase [Turicibacter sp. HGF1] gi|325489979|gb|EGC92326.1| diaminopimelate epimerase [Turicibacter sp. HGF1] Length = 277 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 62/276 (22%), Positives = 110/276 (39%), Gaps = 14/276 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHD---NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 F K+ +GN L+I++ + + A+ D I+++ A D + Sbjct: 6 FTKLSTLGNNYLIINLLEQPKSNMDWSQLALKITDASTGILSDGIIILTPSDIA--DVKM 63 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 I N DGS ++CGNG+R + R+L + ++ D + Sbjct: 64 MIYNKDGSRAKTCGNGLRLIGRYLMEIDRFNQDQILVETDANISTLTHDKDVITVDLGLA 123 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 P K D ++ + ++SMGNPH I + ++D + + Sbjct: 124 HMLTE-PYEPLSLKSDVTKYCKEIETSFGIWMVDMISMGNPHFIIYTDEDHHTFYEEMGR 182 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT-- 242 VN+ + V + L L T+ERG G T ACG+ A+V ++ + Sbjct: 183 LSKRY------DVNVGMLTVINDHELKLTTYERGAGFTGACGTNTAAAVASAVVRRQVLP 236 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 N + V + GG L ++W N+H+ +G+ K G Sbjct: 237 NEIIKVYLPGGILEVKWDLNDHLLTSGKTTKVCCGT 272 >gi|300744002|ref|ZP_07073022.1| diaminopimelate epimerase [Rothia dentocariosa M567] gi|300380363|gb|EFJ76926.1| diaminopimelate epimerase [Rothia dentocariosa M567] Length = 312 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 63/300 (21%), Positives = 106/300 (35%), Gaps = 34/300 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIM-------------LIHD 54 K G GN + + + +D I D + L+ + Sbjct: 17 TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNLLEE 76 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 DA F+ N DGS + CGNG+R V +L + ET++ Sbjct: 77 HPDAI--WFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVA 134 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + W I + + H+ + R +SMGNPH + + + Sbjct: 135 RTEEGYAIDMGPWSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQE 192 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGVGLTAAC 225 L + +P +G N+ LE+ + +R +ERGVG T +C Sbjct: 193 GKLDGLD-LNSQPQVNPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGETLSC 251 Query: 226 GSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279 G+ ACA+ A+ + V + GG L + + D HV + G A+ + +L Sbjct: 252 GTGACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQTVAKIEL 311 >gi|154174386|ref|YP_001407369.1| diaminopimelate epimerase [Campylobacter curvus 525.92] gi|112802366|gb|EAT99710.1| diaminopimelate epimerase [Campylobacter curvus 525.92] Length = 249 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 29/274 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 +K GN ++ D + A + D ++++ + + N Sbjct: 4 SKYNANGNDFVIFHTFVSADR-SELAARLCDRYNGIGADGLIVL-KPDKDTNEIVWEFYN 61 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS CGNG R ++ + + F+ + G + N +S D E L Sbjct: 62 SDGSHADMCGNGSRAAAQY-AVDNQLCTNVFDLVTGSGIVSVN----VSKDGVEVELTSP 116 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 I + D F + G PH + FV DL +D+ + +L Sbjct: 117 KILSNKPID--------------EFGKIWHFYDTGVPHLVSFVS-DLNEFDIQTCRDL-- 159 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247 + N+++A++ + ++ +RT+ERGV T ACG+ A + +R Sbjct: 160 ---RYKYNANVNLAKLEN-NTIYVRTYERGVENETLACGTGMAACFYGAVLNFNASRCCK 215 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V G L +N +F G+ K ++ +D+ Sbjct: 216 VYPKSGDELGLRLENGKIFFKGKVKHCFDAYIDV 249 >gi|330792346|ref|XP_003284250.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum] gi|325085823|gb|EGC39223.1| hypothetical protein DICPUDRAFT_27357 [Dictyostelium purpureum] Length = 479 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 2/193 (1%) Query: 89 TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGP 148 + + N + I + + + Sbjct: 280 FQHPQYNNDLISYNNDQFEIDSNIFQQCPIFKLNQKNTIGKINNRILSTNSNYEDYSKMI 339 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE 208 N +VSMGNPH + +E ++ + L +G ++ HP+F + N+ V + + Sbjct: 340 QCGGHFINSTLVSMGNPHCVLHLE-NVEEFPLDYYGKVIESHPIFPQKTNVEFVEVKNRD 398 Query: 209 SLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFM 267 L +R W+RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF+ Sbjct: 399 LLRVRVWQRGIGVTHSCGTGAAAALVSGVLRGKNNRKANVQMDGGTLEVEWREEDDRVFI 458 Query: 268 TGEAKKEWEGKLD 280 + A ++G + Sbjct: 459 SCPAITVFQGTIK 471 Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 15/107 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVI---------DMRGCHDNITSDAINA---LSTDDNTHFDQ 48 + S +++F KM G +V + + + I A + D Sbjct: 57 LSSIVLNFCKMHVRGQDFIVFHIDSLKYESNNQSFRPPVKGLQIIAQNLCDRESGVGADN 116 Query: 49 IMLIHDFQD---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM 92 +++I + D + I N DGS ++C G+ CV +++ Sbjct: 117 VLVITPPPTEQLENADFQLLIFNSDGSLAENCSTGVSCVCKYIIDYN 163 >gi|255973530|ref|ZP_05424116.1| diaminopimelate epimerase [Enterococcus faecalis T2] gi|307282800|ref|ZP_07563000.1| diaminopimelate epimerase [Enterococcus faecalis TX0860] gi|255966402|gb|EET97024.1| diaminopimelate epimerase [Enterococcus faecalis T2] gi|306503656|gb|EFM72887.1| diaminopimelate epimerase [Enterococcus faecalis TX0860] Length = 326 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 132/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T + I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTVEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + IP+ + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTIPMHLGVQTLIDEIVPALSNTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|154149336|ref|YP_001405720.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] gi|153805345|gb|ABS52352.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] Length = 272 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 92/288 (31%), Gaps = 41/288 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ--------- 56 + +K GN ++ + N ++ A + D +++I + Sbjct: 3 IKISKYNASGNDFVIFES-DSFHNYSNLARKICNRHKGIGADGLIVIIKNKSEISNKISS 61 Query: 57 ------DASVDAFIRIINCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAK 109 + +D N DGS+ CGNG R +++ K+ F T GI+ A+ Sbjct: 62 LILDLNNDKIDFAWDFYNSDGSKADMCGNGSRAAALFAYENKIANKNMKFLTGAGIINAE 121 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + G PH + Sbjct: 122 ICEINKHLAI----------------VESELTKPVKKAENFSENGFLWSFYDTGVPHLVT 165 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSA 228 FV+ DL +++ NL N++ A L +RT+ERGV T ACG+ Sbjct: 166 FVK-DLNDFNIEVARNL-----RKKYNANVNFASFKDE-ILRVRTYERGVEDETLACGTG 218 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 A + V V G +L +++ VF G ++ Sbjct: 219 MAACFITGVINFNLQNVVKVMPKSGEILYLRKNDDKVFFKGAVSHSFD 266 >gi|41408938|ref|NP_961774.1| diaminopimelate epimerase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571142|sp|Q73W21|DAPF_MYCPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|41397297|gb|AAS05157.1| DapF [Mycobacterium avium subsp. paratuberculosis K-10] Length = 294 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 101/303 (33%), Gaps = 27/303 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLI------------ 52 + FAK G N +++ +T + AL D ++ + Sbjct: 1 MKFAKGHGTENDFVLLCDPPAELRLTGAGVAALCDRRRGLGADGVLRVTAAAAAAAAGVL 60 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A D ++ N DGS Q CGNG+R +L + ET +V Sbjct: 61 DRLPDGVAGDDWYMDYRNADGSVAQMCGNGVRVFAHYLRASG------LETRDEFVVGSL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 ++V + + + ++ V V A Sbjct: 115 AGPRPVTVHAADATGADVSVDMGKANTLGGGGEAFEATVGGRRFAGLAVDVGNPHLACLD 174 Query: 171 VEDDLYHYDLASFGNLLAKH-PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC-GSA 228 E + ++ F +GVN+ + + + +R ERGVG T +C Sbjct: 175 PELSVDELAALDVAAPVSFDAAQFPDGVNIEVLTAPAAGVVHMRVHERGVGETRSCGTGT 234 Query: 229 ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIK 288 A V A ++V++ GG +++ D ++ G + G++ + +W + Sbjct: 235 VAAVVAALAAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEWWQ 290 Query: 289 KNE 291 + + Sbjct: 291 QAQ 293 >gi|15827475|ref|NP_301738.1| diaminopimelate epimerase [Mycobacterium leprae TN] gi|221229952|ref|YP_002503368.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] gi|1169226|sp|P46814|DAPF_MYCLE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|254767117|sp|B8ZQU1|DAPF_MYCLB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|467096|gb|AAA17279.1| dapF [Mycobacterium leprae] gi|13093025|emb|CAC31377.1| diaminopimelate epimerase [Mycobacterium leprae] gi|219933059|emb|CAR71091.1| diaminopimelate epimerase [Mycobacterium leprae Br4923] Length = 296 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 108/303 (35%), Gaps = 34/303 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI----------- 52 M+ FAK G N +V+ T+ + AL D ++ + Sbjct: 1 MI-FAKGHGTQNDFVVLPDVEADVTFTAAQVAALCNRRQGLGADGVLRVTTAGAAVTAGV 59 Query: 53 ---HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILV 107 + D ++ N DGS Q CGNG+R +L + F ++ G + Sbjct: 60 LEHLPDGVSCSDWYMDYRNADGSVAQMCGNGVRVFAHYLRASGLESCDEFVVGSLAGPRL 119 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH- 166 + ++ D+ + + + + V +GNPH Sbjct: 120 VNVHHVDELNADVTVDM---------GKANLLGSGGPAFAVTVGGRRFSGVAVDVGNPHL 170 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPM-FSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 A + L G + + F +GVN+ + + +R ERGVG T +C Sbjct: 171 ACMDPQLSLEELAALDLGAPVHLDRVQFPDGVNIEVLTAPVDGMVQMRVHERGVGETRSC 230 Query: 226 GSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 G+ A+ VA+ + ++V++ GG ++I D ++ G + G+L Sbjct: 231 GTGTVAAAVAALASAGADTGTLTVRVPGGDVVITITDVTS-YLRGPSVLVAHGEL---AD 286 Query: 285 KWI 287 W Sbjct: 287 AWW 289 >gi|224418877|ref|ZP_03656883.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|253827831|ref|ZP_04870716.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|313142394|ref|ZP_07804587.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|253511237|gb|EES89896.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] gi|313131425|gb|EFR49042.1| diaminopimelate epimerase [Helicobacter canadensis MIT 98-5491] Length = 248 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 87/271 (32%), Gaps = 31/271 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F+K GN +++ +N S+ + + D ++++ D Sbjct: 3 FSKYSASGNDFILMHTFRYKENSYSELAKKICHRQEGIGADGLIILKPH--LEYDFEWEF 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS + CGNG R + + ++ + + + Sbjct: 61 YNADGSVAEMCGNGSRAAAMYARDLGLAGERQKFLSKAGVIGVSIEGNWAESALSKADIL 120 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 K I F ++++ G PH + + +LA Sbjct: 121 QKEI--------------------SEFGVKWWLLNTGVPHLVC------ENANLAFLNKE 154 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 + N++IA + + RT+ERGV T ACG+ A L K + Sbjct: 155 DLRFLRHKYNANINIASLQD-NRVLARTFERGVEDETLACGTGMAAMFYYLFLLGKVSNP 213 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 G L D +++ GE +K + Sbjct: 214 CLFNPASGEDLYLREDKGTLYLKGEVRKICD 244 >gi|312868983|ref|ZP_07729161.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3] gi|311095486|gb|EFQ53752.1| diaminopimelate epimerase [Lactobacillus oris PB013-T2-3] Length = 335 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 137/322 (42%), Gaps = 44/322 (13%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI--------------M 50 M K+ G N ++D +T D + L+ Q+ + Sbjct: 2 MTQLLKVHGSQNSFFILDQTKLKQALTDDELRRLAR-------QLTDPQDGLLGGADGLL 54 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 ++ A +R+IN DGSE CGNG+R V R++ R + +F +T+ L ++ Sbjct: 55 VVDRPTRPGATAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLRVRQ 114 Query: 111 NRDGSISVDMGEPILDWKLIPL-----ARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGN 164 + + G P ++ P+ A FD + DR PV L +++ N Sbjct: 115 AGE----LAPGVPAFAVEISPVRFNRAALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPN 170 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH I FV + + L G+ +P FS+GVN++ A++ + L +RT+ERGVG T Sbjct: 171 PHLISFVNQETIEGPLLGELGSYLNGANPYFSDGVNVNFAQILGPQKLFVRTYERGVGFT 230 Query: 223 AACGSAACASVVASGCLHKT----NRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEW 275 ACG+ A+ +A LH + AV+V GG + H +H + + G A + Sbjct: 231 NACGTGMSATSLAFALLHPASAAFDEAVTVYNPGGMVKTSVHFADHRYWIELIGNAT--F 288 Query: 276 EGKLDIKTGKWIKK--NEDDEA 295 +L+I + D Sbjct: 289 THQLEIAEDLLHQGRVTAHDAQ 310 >gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor] gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor] Length = 425 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 7/180 (3%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNI--TSDAINALSTDDNTHFDQIMLIHDFQDAS 59 + F K +G+GN +++D R +A+ + D ++ + + Sbjct: 85 SERALHFVKYQGLGNDFILVDNRDSWVPKVTPEEAVKLCDRNFGIGADGVIFVMPGVN-G 143 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRF---LTSRMKRKSFTFETIRGILVAKENRDGSI 116 D I+I N DGSE + CGNG+RC RF + + SFT T G ++ + DG + Sbjct: 144 ADYNIKIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQV 203 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 VDM E I IP ++ V + VSMG V+ + Sbjct: 204 KVDMDEHIPSGPDIPTKL-LATKNKAVVQAKLVVEGLPWHVTCVSMGVTFGAKEVKVKVD 262 >gi|157163987|ref|YP_001465937.1| diaminopimelate epimerase [Campylobacter concisus 13826] gi|112801819|gb|EAT99163.1| diaminopimelate epimerase [Campylobacter concisus 13826] Length = 247 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 31/277 (11%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + +K GN ++ D + A S + D ++++ ++ Sbjct: 1 MQVSKYNASGNDFVIFHTFLSKDR-SELARQICSRTNGVGADGLIVLLPYEKG---VKWE 56 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS CGNG R R+ S F + G S+ + E +L Sbjct: 57 FYNSDGSYAAMCGNGSRAAARYAYLNGLVSSSEFALLTGSGEV----MASVKDECVEVVL 112 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 I L+ + + + G PH + F + +L +D+ Sbjct: 113 TSPKI-LSEPLN--------------EGGKTWYFYDTGVPHLVNFTQ-NLDEFDVKECRV 156 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 L N+++A+ L +RT+ERGV T ACG+ A + + Sbjct: 157 L-----RQKYNANVNLAKF-DGGVLKVRTYERGVEDETLACGTGMAACFYGATLNLNAAQ 210 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + V G L +N + +G K ++ ++I Sbjct: 211 CLKVYPKSGEELGLRLENGKILFSGAVKHCFDTSIEI 247 >gi|315927477|gb|EFV06815.1| diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 214 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 32/238 (13%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + ++ ++ A + + D ++I + D Sbjct: 1 MKFYKYCASGNDFVITNA-DRKEDRSALAKELCNRYEGIGADGFIVILPHEK--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R F K + +F T GI+ AK N+ Sbjct: 58 FYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ------------ 105 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ K ++ F + + + G PH + F + +L F Sbjct: 106 ---DKVEVSLGKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQ------NLDEFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHK 241 +L + N++ ++ L +RT+ERGV T ACG+ A + K Sbjct: 151 TMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKK 208 >gi|319955792|ref|YP_004167055.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511] gi|319418196|gb|ADV45306.1| diaminopimelate epimerase [Nitratifractor salsuginis DSM 16511] Length = 255 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 92/279 (32%), Gaps = 36/279 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIIN 68 K GN ++ D A D ++++ A D N Sbjct: 4 TKYNANGNDFVIFHDNQKRDRH-ELAKLLCDRHKGVGADGMVVLIPH--AEYDFEWEFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-SISVDMGEPILDW 127 DGSE CGN R V + + + E + G V +G + DM EP + Sbjct: 61 SDGSEATMCGNATRAVAHYAVEKGISVNDRAEFLTGAGVITAEVNGLYVVTDMLEPKILR 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 + I +++ G PH + VE DL ++DL L Sbjct: 121 RDI--------------------EEEGLQWWLIDTGVPHLVAEVE-DLENFDLEMARRLR 159 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246 K+ + + L LRT+ERGV T ACG+ A V + K Sbjct: 160 EKYDANVNIYT------VAEDELRLRTYERGVEGETLACGTGMTACYVRAREEGKARDLC 213 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEA--KKEWEGKLDIK 282 V G L +E+ + G+ E LDI Sbjct: 214 IVFPRSGDELYLEYKE-GRYRFGGKVDKTFVAELTLDIP 251 >gi|300933037|ref|ZP_07148293.1| diaminopimelate epimerase [Corynebacterium resistens DSM 45100] Length = 316 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 102/306 (33%), Gaps = 35/306 (11%) Query: 2 QSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIH------- 53 + M F K G N + I ++ D + ++ D ++ + Sbjct: 16 SAGMTRFIKAHGTQNDFVFIVDPTVTVDLNEDRVRRIADRHAGIGGDGVIRVATAASLID 75 Query: 54 -----------DFQDASV-----DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF 97 D ++ + F+ N DGS + CGNG+R L + Sbjct: 76 ANVLDPNILQPDPENPRATIHEDEWFMDYRNADGSIAEMCGNGVRAFAHVLIAEKLIGGG 135 Query: 98 TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP 157 + I V + + + + + R F Sbjct: 136 EPKFPIEIGVGTRAGRKIVKIHEADAQQAKVSVDMGRPV-----VTGMSTASIGGFNLAG 190 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLA---KHPMFSEGVNLSIARVTSLESLDLRT 214 V MGNPH + +L LA F GVN+ +A ++ +R Sbjct: 191 LGVDMGNPHLAAII-PNLTAEKLAELPIGEKVTWDEEFFPTGVNVEVATPLEDGAVHMRV 249 Query: 215 WERGVGLTAACGSA-ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 ERGVG T +CG+ +V A K V V++ GG + ++ + V +TG ++ Sbjct: 250 HERGVGETRSCGTGTVATAVAALADAGKEFGTVVVRVPGGEVEVDITADTAV-LTGPSQI 308 Query: 274 EWEGKL 279 G++ Sbjct: 309 VARGEM 314 >gi|290988396|ref|XP_002676907.1| predicted protein [Naegleria gruberi] gi|284090512|gb|EFC44163.1| predicted protein [Naegleria gruberi] Length = 408 Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 64/384 (16%), Positives = 107/384 (27%), Gaps = 107/384 (27%) Query: 6 VDFAKMEGIGNKILVIDM---------------RGCHDNITSDAINALSTD-DNTHFDQI 49 + F KM G+GN + I+ N+ I L D + Sbjct: 22 ITFCKMHGLGNDYIYINCCNLLHSSEANDFRIYLNHQHNLIEYCIQKLCHRTFGIGADGV 81 Query: 50 MLIHDFQ----------DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRK 95 + I + + + + N DGS + CGNG+RCV +F R K K Sbjct: 82 IFITNPTPELLENETNHHQIIHCQMEMYNSDGSSGEMCGNGLRCVAQFACDRLVESGKIK 141 Query: 96 SFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIG---- 147 T E + + + + K PL + + + Sbjct: 142 KQTLEGGQLGYRINVQSNRGKRLYQCICYEDRSTFSKSSPLMVEIEMGNLQTKSVNFSFE 201 Query: 148 -----------------------------PVNHLFLRNPFVVSM----GNPHAIFFVEDD 174 P+ L + NP + + + I Sbjct: 202 NNSNSIEYVEQEENSIRKIIFKQYLDCEIPLYCLLVPNPHAICWVNEISSQNEIDNTMKA 261 Query: 175 LYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLR-------------------T 214 + + L + G ++ +F N+ S + ++ T Sbjct: 262 VDSFPLHTIGPIIENLKQLFPNRTNVEFIETISAQHIETNDSPLIKSLKSNCILSARQRT 321 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNR---------AVSVKMLGGGLLIEWHDNNH- 264 WERG G T ACG+ A A + V + + GG L +H +N Sbjct: 322 WERGSGETNACGTGAFAVSQVLYLRNAITNSIGNIPNTATVRISLNGGDLWFRYHKSNPT 381 Query: 265 ------VFMTGEAKKEWEGKLDIK 282 V M G G + Sbjct: 382 SLDHIQVNMIGSVNYSHTGSFKLS 405 >gi|311113254|ref|YP_003984476.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931] gi|310944748|gb|ADP41042.1| diaminopimelate epimerase [Rothia dentocariosa ATCC 17931] Length = 312 Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 30/298 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAI-NALSTDDNTHFDQIMLI-----------HDFQ 56 K G GN + + + +D I D + + Sbjct: 17 TKGHGTGNDFIFLTDPASEIPLDADLIARVCDRHFGIGADGFIRAAYTENFRTGQNMLEE 76 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 F+ N DGS + CGNG+R V +L + ET++ Sbjct: 77 HPDAIWFMDYRNGDGSIAEMCGNGVRAFVDYLRTEGMIDLEVGETVKIATRGGVKIVART 136 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + W I + + H+ + R +SMGNPH + + + Sbjct: 137 EEGYAIDMGPWSFI--HGDTARESGEDSHVSARGLMTPRAGLSISMGNPHTVVMLGQEGK 194 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---------LDLRTWERGVGLTAACGS 227 L + +P +G N+ LE+ + +R +ERGVG T +CG+ Sbjct: 195 LDGLD-LNSQPQVNPAPEKGTNVEFVVPVDLETSDENKNVGAIRMRVYERGVGETLSCGT 253 Query: 228 AACASVVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279 ACA+ A+ + V + GG L + + D HV + G A+ + +L Sbjct: 254 GACAAAAATRFWGGEEAPDEWLVHVPGGTLAVTFVLGPDDLEHVVLAGPAQTVAKIEL 311 >gi|317010785|gb|ADU84532.1| diaminopimelate epimerase [Helicobacter pylori SouthAfrica7] Length = 273 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 96/269 (35%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + + Sbjct: 60 NSDGSQAGMCGNASRCVGLFAYQHAIAPKEHVFLAGQREISIRIEEPNTIESNLGNYKIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 IP + +F + +++ G PH + FV+ L S L Sbjct: 120 DTIP------ALKCKKFFTNDSVLASIPTFYLIDTGVPHLVGFVK---NKGLLNSLDTLE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + N++IA + + +++ L+T+ERGV T ACG+ A +A+ + T + Sbjct: 171 LRTLRHDFNANINIAFIENQKTIFLQTYERGVEDFTLACGTGMAAVFIAACVFYNTPQNA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + N+ +F G + Sbjct: 231 TLIPKSNEFLELSLK-NDEIFYKGAVRYI 258 >gi|226326692|ref|ZP_03802210.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198] gi|225204913|gb|EEG87267.1| hypothetical protein PROPEN_00545 [Proteus penneri ATCC 35198] Length = 162 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 5/151 (3%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 M G+GN +V+D + + + I L+ FDQ++++ D +D RI N Sbjct: 1 MHGLGNDFMVVDAVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNA 60 Query: 70 DGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 DGSEV CGNG RC RF+ + ++ T G + + + + V+MGEP + Sbjct: 61 DGSEVAQCGNGARCFARFVRLKGLTNKREIKVSTQSGRMTLQVMDNDDVCVNMGEPEFEP 120 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158 + P K +D ++ G H + F Sbjct: 121 QKNPF--PCTKGRKDLYYQGNGTHCIMWCSF 149 >gi|315146936|gb|EFT90952.1| diaminopimelate epimerase [Enterococcus faecalis TX4244] Length = 326 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 45/320 (14%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAI----NALSTDD-----------NTHFDQI 49 M+ K+ G N ++D ++T++ I L + + Sbjct: 4 MMQ--KVHGSENDFFLLDETQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVG---- 57 Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 + + +A +R+IN DGSE CGNG+R V R+L + + KSFT ET+ L + Sbjct: 58 ----EGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAEKNQEKSFTVETMFADLKVR 113 Query: 110 E-----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + + V++ + I + + + F V++ N Sbjct: 114 QAPNLAEEVATYQVEISPVSFEAVTISMHLGVQTLIDEIVPALSKTIRF----TAVAVPN 169 Query: 165 PHAIFFVEDD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 PH + FV+ + L + ++P F EG+N+S + L +RT+ERGVG T Sbjct: 170 PHLVAFVDHETLNGPEFERIATYVNNENPYFPEGINVSFVEILGKNQLFVRTYERGVGFT 229 Query: 223 AACGSAACASVVASGCL--HKTNRAVSVKMLGGGLLIEWHD--NNHVFM--TGEAKKEW- 275 +ACG+A CAS + L ++VK GG + H+ + +M G A Sbjct: 230 SACGTAMCASSLLYTLLKDGVFYEEITVKNAGGMVKTVVHETSDGSYWMELIGNATITHL 289 Query: 276 -EGKL-DIKTGKWIKKNEDD 293 EG L D+ G + K + Sbjct: 290 IEGSLTDLLNGAFEKITITE 309 >gi|227533415|ref|ZP_03963464.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188981|gb|EEI69048.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 335 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 125/320 (39%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A D L +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175 Query: 173 DD-LYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L DL G + AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEELAGPDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKW----IKKNEDDEAY 296 + G W IK + Y Sbjct: 296 LLAGDWQQAKIKATGEQAEY 315 >gi|15835329|ref|NP_297088.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] gi|270285500|ref|ZP_06194894.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] gi|301336897|ref|ZP_07225099.1| diaminopimelate epimerase [Chlamydia muridarum MopnTet14] gi|13626307|sp|Q9PJW2|DAPF_CHLMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|8163300|gb|AAF73596.1| diaminopimelate epimerase [Chlamydia muridarum Nigg] Length = 269 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 101/267 (37%), Gaps = 28/267 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ I L + D + + + A DA + I N D Sbjct: 15 YSGTGNSFIL-----GEFIPPLQHIVFLCQKEKV--DGFLCVEPSEIA--DAKLTIFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GSE CGNG+RCV+ + + + + ET+RG+ K + VDM Sbjct: 66 GSEASMCGNGLRCVMAHVAQSLGLEDVSIETVRGVYQGKFFSMDRVLVDMTLLDWKKTKK 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L M + F + G PH + FV D+ + +G L H Sbjct: 126 TLTHVLPGMPEE--------------VFFIDTGVPHVVVFV-PDVNKVPVQEWGAFLRYH 170 Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 GVN+ + ++L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFRPNGVNVDFVQTKKEDTLLVYTYERGCERETLSCGTGMLASALVAADVFSLEQDFSL 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273 V G ++ + +N VF+ G Sbjct: 231 LVCSRSGNIVKIFSENGKVFLEGPVTL 257 >gi|222823099|ref|YP_002574672.1| diaminopimelate epimerase [Campylobacter lari RM2100] gi|254767095|sp|B9KED6|DAPF_CAMLR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|222538320|gb|ACM63421.1| diaminopimelate epimerase [Campylobacter lari RM2100] Length = 249 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 95/276 (34%), Gaps = 30/276 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K GN ++ + + A + + D +++I D Sbjct: 1 MKFYKYCASGNDFVIF-ADSEKKDRSELAKILCNRYEGIGADGLIVIVPHDR--YDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 NCDGS+ CGNG R F +K+ + L+ D + Sbjct: 58 FYNCDGSKANMCGNGSRAAAHFAHHHLKKSQYLNFLTGAGLIKSFVDDDIV--------- 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 I L+ D + + + G PH + FV+D L+ F Sbjct: 109 ---EIKLSGIKDIKEAFEYKDRIWQG--------CNTGVPHIVTFVDD------LSEFDI 151 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 L K N++ A+V E + +RT+ERGV T ACG+ A + K Sbjct: 152 NLCKEVRKKYNANVNFAKVEDDEFIRVRTYERGVEDETLACGTGMGACFYLAYLNQKVKD 211 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + +K L + +F G+ K +E + Sbjct: 212 DILIKPKSNESLYFRLEEEQIFFRGKVKCCFEADYN 247 >gi|145224542|ref|YP_001135220.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] gi|189082836|sp|A4TCN3|DAPF_MYCGI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|145217028|gb|ABP46432.1| diaminopimelate epimerase [Mycobacterium gilvum PYR-GCK] Length = 289 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 104/303 (34%), Gaps = 33/303 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53 + FAK G N +++ ++T+ A+ AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A D F+ N DGS + CGNG+R +L + E +V Sbjct: 61 DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGG------LEHRSEFVVGSL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168 + + + + + ++ + V +GNPH + Sbjct: 115 AGPRPVVLHEADDTTADVTVEMGKAVRCG-----TGTATVGGRRFSGLAVDVGNPHLACV 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D L + F GVN+ I ++ +R ERGVG T +CG+ Sbjct: 170 DEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSCGTG 229 Query: 229 ACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ VA+ + V++ GG + + + + ++ G + G+L +W Sbjct: 230 TVAAAVAALDHQGARTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL---AEQWW 285 Query: 288 KKN 290 Sbjct: 286 AAQ 288 >gi|315444873|ref|YP_004077752.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] gi|315263176|gb|ADT99917.1| diaminopimelate epimerase [Mycobacterium sp. Spyr1] Length = 289 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 104/303 (34%), Gaps = 33/303 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIH----------- 53 + FAK G N +++ ++T+ A+ AL D ++ + Sbjct: 1 MKFAKGHGTQNDFVLLPDLNAQYSLTARAVAALCDRRRGLGADGLLRVTTAGAALAAGVF 60 Query: 54 ---DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A D F+ N DGS + CGNG+R +L + E +V Sbjct: 61 DRLPEGVAEDDWFMDYRNADGSIAEMCGNGVRVFAHYLHAGG------LEHRSEFVVGSL 114 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168 + + + + + ++ + V +GNPH + Sbjct: 115 AGPRPVVLHEADDTTADVTVEMGKAVRCG-----TGTATVGGRTFSGLAVDVGNPHLACV 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 D L + F GVN+ I ++ +R ERGVG T +CG+ Sbjct: 170 DEELTDAGLASLDVASPVAFDSTQFPHGVNVEILTAPRDGAVAMRVHERGVGETRSCGTG 229 Query: 229 ACASVVASG-CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 A+ VA+ + V++ GG + + + + ++ G + G+L +W Sbjct: 230 TVAAAVAALDHEGAHTGTLRVRIPGGEVCVTVTETDS-YLRGPSVLLAHGEL---AEQWW 285 Query: 288 KKN 290 Sbjct: 286 AAQ 288 >gi|320162786|gb|EFW39685.1| diaminopimelate epimerase [Capsaspora owczarzaki ATCC 30864] Length = 376 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 125/368 (33%), Gaps = 95/368 (25%) Query: 11 MEGIGNKILVIDMRGCHDN---------------------ITSDAINALS-TDDNTHFDQ 48 M G GN +V++ + I A+ + DQ Sbjct: 1 MTGCGNDFVVLEASDLESLETASTGFGVTATTASGSGQAMLDKTDIRAMCDRRNGIGCDQ 60 Query: 49 IMLIH--------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--------- 91 +++I ++I N DGSE +CGN RCV + R Sbjct: 61 LLVIAAQPVQMDARSGAPVAAVSMQIYNSDGSEALACGNATRCVAQLWMDRELEDDARRE 120 Query: 92 ----MKRKSFTFETIRGILVAKEN--------------------RDGSISVDMGEPILDW 127 + T L ++ ++ VDMG P +W Sbjct: 121 QVLAAGEQVVVVITASRTLRCWRALDRSTPSKTIPSTTIAQDPFQNVNVFVDMGLPEFEW 180 Query: 128 KLIPLARSFDK-------MDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF--FVEDDLYHY 178 IPL+R + D L V MGNPH +F E+ L Sbjct: 181 TRIPLSRDVQRGSALDAVTDLGLADAPKDVASLLARGVAVGMGNPHLVFLLPSEEQLNQI 240 Query: 179 DLASFGNLLAKHPMFSEGVNLSIA----------RVTSLESLDLRTWERGVGLTAACGSA 228 D+ + G+ L + +F +GVN++ A + + + WERG G T ACGSA Sbjct: 241 DVRAVGSKLETNALFPQGVNVTFAAIGPAATTGSNAEASRRILAKVWERGAGETLACGSA 300 Query: 229 ACASVVASGCLHKT------------NRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEW 275 ACA + A+ N++V SV+M GG L + + + G ++ + Sbjct: 301 ACAVIAAAQRTGVLVAPAATAADNAANQSVFSVQMPGGTLQVGISAQGTMVLAGPSRVVF 360 Query: 276 EGKLDIKT 283 G + Sbjct: 361 VGVYSPPS 368 >gi|116493672|ref|YP_805406.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334] gi|116103822|gb|ABJ68964.1| diaminopimelate epimerase [Lactobacillus casei ATCC 334] Length = 335 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ I Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAITAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A D L +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G + AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK----KNEDDEAY 296 + G W + + Y Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315 >gi|84685925|ref|ZP_01013821.1| diaminopimelate epimerase [Maritimibacter alkaliphilus HTCC2654] gi|84666018|gb|EAQ12492.1| diaminopimelate epimerase [Rhodobacterales bacterium HTCC2654] Length = 156 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 MG P W IPL++ D +P V MGNPHA+FFV+ D+ D Sbjct: 1 MGHPQTMWDEIPLSKPMDTAHL----------PLDCDPMAVGMGNPHAVFFVD-DVGAVD 49 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 + + G + P+F + N+ A V S + + +R WERG G+T ACGS ACA+ VA+ Sbjct: 50 VEARGRAVEFDPLFPQRTNVEFAEVRSRDEIRMRVWERGTGITLACGSGACATAVAAAER 109 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 T R V +++ GG L ++W D+ V+MTG ++ L Sbjct: 110 GLTERKVRMEVDGGWLTLDWRDDG-VWMTGPTAHVFDATL 148 >gi|323490197|ref|ZP_08095415.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2] gi|323396126|gb|EGA88954.1| diaminopimelate epimerase [Planococcus donghaensis MPA1U2] Length = 317 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 18/282 (6%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M+ +++ K+ G N + + D+ AI + D D I++I A Sbjct: 1 MEMTLI---KVHGSMNTFYMFEG-EERDDYARLAIQLSALDKKI--DGILVILPS--AVA 52 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A +R+ N DGSE CGNG+RCV R++ R + ET++ L K+ + ++ Sbjct: 53 HAKMRVFNNDGSEASMCGNGLRCVARYVCERDNVQEAVIETMKASLRVKKEETLNEGIET 112 Query: 121 GEPILDWKLIPL-ARSFDKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDLYHY 178 + L + +D + P+ + PF VS+ NPH I V ++L Sbjct: 113 YAVEISPVSFSLSSLPMTYLDHTEWIQKPLPFISEEIPFSAVSVPNPHLIGIVPEELQKD 172 Query: 179 DLASF---GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 ++ F +GVN+S +RT+ERGVG T ACG+A AS + Sbjct: 173 TSHQQKWAQQFNGENKYFPDGVNVSYVTPVERGIF-VRTYERGVGFTNACGTAMTASALI 231 Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDNNH---VFMTGEAKK 273 S VSV GG + + +TG A Sbjct: 232 SCMAGLVPFGEVSVYNPGGLVKCSVRKEGETIQLQLTGNATY 273 >gi|191636926|ref|YP_001986092.1| diaminopimelate epimerase [Lactobacillus casei BL23] gi|190711228|emb|CAQ65234.1| Diaminopimelate epimerase [Lactobacillus casei BL23] gi|327380951|gb|AEA52427.1| Diaminopimelate epimerase family protein [Lactobacillus casei LC2W] gi|327384127|gb|AEA55601.1| Diaminopimelate epimerase family protein [Lactobacillus casei BD-II] Length = 335 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 125/320 (39%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A D F L +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTFLPAIHPSL---KFTAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G + AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGERYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK----KNEDDEAY 296 + G W + + Y Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315 >gi|284992293|ref|YP_003410847.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160] gi|284065538|gb|ADB76476.1| diaminopimelate epimerase [Geodermatophilus obscurus DSM 43160] Length = 285 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 105/300 (35%), Gaps = 40/300 (13%) Query: 12 EGIGNKILVI---DMRGCHDN-ITSDAINALSTDD-NTHFDQIMLIHDFQD--------- 57 G N +V+ D G ++ + + + L D ++ + Sbjct: 5 HGTQNDFVVLPDPDGTGWPESRLDAAMVRRLCERRAGLGGDGVLRVVPSVHVPDAPAVLG 64 Query: 58 ---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + F+ N DGS + CGNG+R + L + + GI V Sbjct: 65 EALGRCEWFMDHRNADGSTAEMCGNGIRLFLHVLVTEGLVERT--ACADGIWVGTRGGPR 122 Query: 115 SISVDMGEPIL--DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + P +D F VSMGNPH + Sbjct: 123 RVGATADGGYWVDMGPARPFGAGTAHLDGASF-----------PGRAVSMGNPHLAVLTD 171 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLE-SLDLRTWERGVGLTAACG-SAAC 230 D+ DLA+ + A +F +GVN+ V + LR ERGVG T +CG A Sbjct: 172 VDVDTLDLATAPAVDA--ALFPDGVNVEFVNVVDPGRHVRLRVSERGVGETRSCGTGACA 229 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 A+ A V+V + GG L + + V ++G A G+L + +W++ Sbjct: 230 AAWAALEAAGAATGTVTVDVPGGRLGVTVDEQTTV-LSGPAVVVATGELTV---EWLRAT 285 >gi|3789903|gb|AAC67537.1| diaminopimelate epimerase DafE [Dictyostelium discoideum] Length = 351 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 80/134 (59%), Gaps = 2/134 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E ++ + + +G ++ HP+F + N+ +V + +SL +R W Sbjct: 217 NSTLVSMGNPHCVLHLE-NVDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 275 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ + Sbjct: 276 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 335 Query: 275 WEGKLDIKTGKWIK 288 +EG + + + Sbjct: 336 FEGSIKFFQDELQQ 349 >gi|301065235|ref|YP_003787258.1| diaminopimelate epimerase [Lactobacillus casei str. Zhang] gi|300437642|gb|ADK17408.1| Diaminopimelate epimerase [Lactobacillus casei str. Zhang] Length = 335 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 123/320 (38%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A D L +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G + AK+P F EGVN++ A ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAETLDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK----KNEDDEAY 296 + G W + + Y Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315 >gi|118475771|ref|YP_892886.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40] gi|118414997|gb|ABK83417.1| diaminopimelate epimerase [Campylobacter fetus subsp. fetus 82-40] Length = 247 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 34/277 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + +K GN ++ N A++ ++ D +++I + D Sbjct: 1 MQLSKYNASGNDFVIFHTFKS-LNRRELAMSLCDRFNSIGADGLIVILPSK--ECDFEWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNG R + K+ +F+T GI+ A + D Sbjct: 58 FYNSDGSLASMCGNGSRAAALYAYQNSLCSKNCSFKTGAGIIKASIDNDF---------- 107 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +A + K + F G PH + FV+ +L+ F Sbjct: 108 -----VEVALTAPKKLSEPFIEYGFE------WSFYDTGVPHLVTFVD------NLSKFD 150 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + N++ A + L++RT+ERGV T ACG+ AS K N Sbjct: 151 LSVCSELRKKYNANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFN 210 Query: 244 RAVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V L +++ D ++ G+ K ++ + Sbjct: 211 PCLKVNPKSKEDLWLKF-DGETIYFKGKVKHCFDTSI 246 >gi|239630913|ref|ZP_04673944.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527196|gb|EEQ66197.1| diaminopimelate epimerase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 335 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 124/320 (38%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDNT--HFDQIMLIHDFQD 57 MV K+ G N + D +T+ + + + + D ++ + Sbjct: 1 MVTLQKVHGSENSFFLFDETQLTQPLTNTQLATVTQQLTNAETGLLGGADGVLAVTAA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L Sbjct: 59 PGTAGKMTVVNTDGSFAKLCGNGLRTVARYLSEKTGQATFKVHTDFADLAVARQPQLAEG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + SV++ + +P A D L +++ NPH I FV Sbjct: 119 VPAYSVEISPVSFAPQDLPFANLGVDRIVDTVLPAIHPSL---KFTAIAVPNPHLIAFVS 175 Query: 173 DDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 ++ DL G + AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 PEVLAGSDLERIGKMLNAKNPYFPEGVNVTFAEILDKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H +R +V GG + H + + + G A L Sbjct: 236 ATTLAFILTHPEEAAFDRVNTVYNPGGMVKTIVHHDGEHYWIELIGNATVTATITLPDTA 295 Query: 281 IKTGKWIK----KNEDDEAY 296 + G W + + Y Sbjct: 296 LLAGDWQQAEIHATGEQAEY 315 >gi|255025945|ref|ZP_05297931.1| diaminopimelate epimerase [Listeria monocytogenes FSL J2-003] Length = 303 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 15/280 (5%) Query: 32 SDAINALSTDDN--THFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89 +D L + D I+ + +A +R++N DGS CGNG+R V R+L Sbjct: 9 ADFAIKLCDRKHSLGGADGILYVTKSSEAGPIGQMRVVNSDGSIASMCGNGLRTVARYLL 68 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGP 148 + ET++ IL K+ + + + K + + F+ Sbjct: 69 EKHALTEAKVETMKAILDVKKATSLGFDIPTYQVEISPVKFNAESLPMNVGVEKLFNQVV 128 Query: 149 VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLLAKHPMFSEGVNLSIARVTS 206 VS+ NPH I FV+ + D L +++P F +GVN+S + S Sbjct: 129 PELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLASYLNSENPYFPDGVNVSFVKRLS 188 Query: 207 LESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDNN- 263 +++ +RT+ERGVG T ACG+A A + L K ++V GG + + + Sbjct: 189 DDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETPLNVYNDGGRVQVTAKKDEA 248 Query: 264 ---HVFMTGEAKKEWEGKLDIK----TGKWIKKNEDDEAY 296 + + G A G ++ + T + + Y Sbjct: 249 GDISLQLIGNATFVSTGSVNYESDTVTELTNEATPEQAQY 288 >gi|224437574|ref|ZP_03658532.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] gi|313144029|ref|ZP_07806222.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] gi|313129060|gb|EFR46677.1| diaminopimelate epimerase [Helicobacter cinaedi CCUG 18818] Length = 272 Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 27/291 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLI----HDFQDASV 60 + F K GN L+ + +S A + D ++++ Sbjct: 1 MQFVKYSSSGNDFLIFQSFERDNGGRSSLAKRVCERHNGIGADGMVVLLLGQDSKDSKKY 60 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 N DGS+ + CGN R + + E I + ++ G I + + Sbjct: 61 AYEWEFYNADGSKAKMCGNASRSIGHYAF---------VEGIAPRKHSFLSQAGIIGIII 111 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 E + + HI N ++ ++ G PH + FV D Sbjct: 112 DESDANL----VQSDLGAYKLVEEHIVESNPYGVKAWALLDSGVPHLVGFVNDKKMLTYS 167 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCL 239 + + I + + T+ERGV +T ACG+ A A + L Sbjct: 168 KDEFLQTLREKYNANVNLAYIDESSDKSRILYMTYERGVEDITQACGTGAAAVFAMALRL 227 Query: 240 HKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKK 289 + + L ++ +N H+ G+ ++ I +W+ Sbjct: 228 GLCGKKALLIPPSNEILELQMTENQHILFKGKVQR-------IAICEWLNS 271 >gi|311896664|dbj|BAJ29072.1| putative diaminopimelate epimerase [Kitasatospora setae KM-6054] Length = 332 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 103/295 (34%), Gaps = 14/295 (4%) Query: 9 AKMEGIGNKILVID---MRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFI 64 K G N I VID R A+ L D + + D D + A+ Sbjct: 7 TKTHGSRNDIFVIDGAPDRHFPAADLERAVTRLCDRKSGLGSDGVYFVEDHGDGTAQAW- 65 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS CGNGMRC R L R +S+T T + + V Sbjct: 66 -FFNPDGSPALLCGNGMRCAGRLLLDRHGAESWTVNTGPYTFTVRAAQTTPHGVRQVAVE 124 Query: 125 LDWKLIPLARSFDKMDRDRFH-IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 L + F + V+M N H + V+ +A+ Sbjct: 125 LPPADFSPQEAIVADVASPFVGQLLPAYHPALRTTAVAMPNSHLVSVVDSYDRADLVATG 184 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 + F G N+S + + + +RT+ERG GLT +CGS AS L Sbjct: 185 SRVADLTSAFPIGANVSFVQPLADGEVFVRTFERGAGLTPSCGSGNSASRAVLSRLGLAE 244 Query: 244 R--AVSVKMLGGGLLIEWHDNNHVF---MTGEAKKEWEGKLDIKTGKWIKKNEDD 293 AV ++ +GG + + + + G A +E +++ + + D Sbjct: 245 PGQAVVIRNVGGPARVWLQEKAGQWQPVLEGNATVVYE--VELDSSALLDDAPLD 297 >gi|66827503|ref|XP_647106.1| diaminopimelate epimerase [Dictyostelium discoideum AX4] gi|60475211|gb|EAL73146.1| diaminopimelate epimerase [Dictyostelium discoideum AX4] Length = 514 Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 80/134 (59%), Gaps = 2/134 (1%) Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 N +VSMGNPH + +E ++ + + +G ++ HP+F + N+ +V + +SL +R W Sbjct: 380 NSTLVSMGNPHCVLHLE-NVDEFPMDYYGKVIESHPIFPQKTNVEFVQVKTRDSLRVRVW 438 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 +RG+G+T +CG+ A A++V+ K NR +V+M GG L +EW +++ VF++ + Sbjct: 439 QRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQMDGGILEVEWREEDDKVFVSCPSVTV 498 Query: 275 WEGKLDIKTGKWIK 288 +EG + + + Sbjct: 499 FEGSIKFFQDELQQ 512 Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 15/113 (13%) Query: 1 MQSSMVDFAKMEGIGNKILV--IDM----------RGCHDNITSDAINALSTDDNTHFDQ 48 + S ++ F KM G ++ ID R + + A + D Sbjct: 57 LSSVILKFCKMHVRGQDFIIFHIDNLRVEYNNSSFRPSIQVLQNIAQRLCDREQGVGADN 116 Query: 49 IMLIHDFQD---ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT 98 +++ + D + I N DGS ++C G+ CV +++ + T Sbjct: 117 TLVLTPPPNDKLNETDFQLLIFNSDGSIAENCTTGVSCVCKYIVDYNLKSYRT 169 >gi|308176880|ref|YP_003916286.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117] gi|307744343|emb|CBT75315.1| diaminopimelate epimerase [Arthrobacter arilaitensis Re117] Length = 311 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 94/310 (30%), Gaps = 51/310 (16%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDF---------- 55 FAK GN +++ ++ + + A+ D ++ Sbjct: 13 RFAKGHATGNDFVLVADPEAKLELSPEQVAAVCHRRFGIGADGLIRAVPTSLVPGYEEQF 72 Query: 56 -QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + F+ N DGS + CGNG+R +L + ++ + A Sbjct: 73 LDNPKAYWFMDYRNNDGSIAEMCGNGVRAFAHYLIAEGLISLQVGQSFQIGSRAGVKEIT 132 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 ++ + W LI + ++ ++MGNPH + + D Sbjct: 133 RLADGYAVNLGPWGLIFEQEATERSIDSMVKPRGWEQAL--PALSITMGNPHTVVAL-PD 189 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIA-------RVTSLESLDLRTWERGVGLTAACGS 227 + P+ G N+ + + +R +ERGVG T +CG+ Sbjct: 190 AQMLEELDLFQAPEVSPVPVNGTNVEFVVPSEPLIEEDGVAQVQMRVYERGVGETLSCGT 249 Query: 228 AACASVVASGCLHKTNRAVSVKM------------------LGGGLLIEWHDNNHVFMTG 269 ACA+ A + + GG I ++G Sbjct: 250 GACAAAAAVRYWAR--STALINQWAVTVPGGVVGVEFRSNEAGGEDTI---------LSG 298 Query: 270 EAKKEWEGKL 279 A G + Sbjct: 299 PADLVARGVI 308 >gi|242310400|ref|ZP_04809555.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489] gi|239522798|gb|EEQ62664.1| diaminopimelate epimerase [Helicobacter pullorum MIT 98-5489] Length = 253 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 31/271 (11%) Query: 8 FAKMEGIGNKILVIDM-RGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 F+K GN +++ R D+ ++ A + D ++++ + D Sbjct: 8 FSKYSASGNDFILMHTFRYNEDSYSNLAKQICHRQEGIGADGLIVLKPHR--EYDFEWEF 65 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS + CGNG R + + + ++ E + + + Sbjct: 66 YNADGSVAEMCGNGSRAAGMYARDLGLAGNSQKFLSKAGMIGVEIEGDWAESALSKAEVL 125 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 + I F +N ++++ G PH + +DL L Sbjct: 126 KQDI--------------------CEFGKNWWLINTGVPHLVC---EDLEIMGLNKEDLR 162 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 +H + S + + RT+ERGV T ACG+ A +K Sbjct: 163 FLRHKYNANINIASC----REDRVLARTFERGVEDETLACGTGMAAMFYYLLLANKVKNP 218 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 L +N +++ G+ +K + Sbjct: 219 CLFNPASKEDLYLREENGKLYLKGKVRKICD 249 >gi|55274302|gb|AAV49044.1| DapF [Azospirillum lipoferum] Length = 92 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 200 SIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259 A+V S ++ +R WERG G+T ACG+ ACA++VA+ T R + + GG L IEW Sbjct: 1 EFAQVLSPTAIRMRVWERGAGITQACGTGACATLVAAARRGLTGRKADILLDGGTLTIEW 60 Query: 260 HDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDDE 294 +++ V MTG + G+L + + + + D Sbjct: 61 TEDDRVLMTGPVALAFSGRL---SAELVSVGQGDA 92 >gi|38234023|ref|NP_939790.1| diaminopimelate epimerase [Corynebacterium diphtheriae NCTC 13129] gi|38200285|emb|CAE49970.1| diaminopimelate epimerase [Corynebacterium diphtheriae] Length = 297 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 96/293 (32%), Gaps = 33/293 (11%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI--------------H 53 K G N ++I +T D I AL D ++ + Sbjct: 14 YKGHGTENDFVIIPDLDAKIELTPDFIAALCDRRSGIGGDGLLRVATAQALLKSGVLAAL 73 Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVAKEN 111 A+ D F+ N DGS Q CGNG R ++ + F T G K Sbjct: 74 PDGVAATDVFMDYYNADGSTAQMCGNGTRVFAHWVRAHGIKDEDEFVVGTRAGARFVKVR 133 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFF 170 ++ + S + IG L V MGNPH A Sbjct: 134 SFDDSQAEVTVDM---------GSAEVTGVSTCTIGSQQFAGLG----VDMGNPHLACVV 180 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + L F EGVN+ IA +R +ERGVG T +CG+ Sbjct: 181 PGYGQEDIENLDLVKPLFDPKFFPEGVNVEIATPLVQGVTHMRVFERGVGETRSCGTGTV 240 Query: 231 -ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + A + V V + GG + + + +TG ++ G +++ Sbjct: 241 ATARAALADAGHADGEVVVVVPGGKVRVTIQGDES-TLTGPSRIVASGYINLA 292 >gi|283456481|ref|YP_003361045.1| diaminopimelate epimerase [Bifidobacterium dentium Bd1] gi|283103115|gb|ADB10221.1| DapF Diaminopimelate epimerase [Bifidobacterium dentium Bd1] Length = 282 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 97/289 (33%), Gaps = 35/289 (12%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQD--------------ASVDAF 63 + D T+D + L D ++ + QD + F Sbjct: 2 VYADP-DGRYEPTADEVRFLCDRHFGIGGDGLIRLAHPQDVSDLKEAQLADCAAGQAEWF 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 + N DGS + CGNG R + F + E R A I +GE Sbjct: 61 MDYRNADGSLAEMCGNGTRAITLFAQRQGLADRPGGEPFRLGTRAGVK----ILTSLGEV 116 Query: 124 ILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---DLYHY 178 K + S+ + D D + + V MGNPH + +ED L Sbjct: 117 EGLGKDVFRVEMGSWQRGDVDGYEVSIPGTAGSARGTFVDMGNPHVVAVIEDAFASLPTV 176 Query: 179 DLASFGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLTAACGSAACAS 232 + P N+ +R ERG G T +CG+ CA+ Sbjct: 177 EELDLVAKPVVSPEIPTDQNVEFVRIDEQSEGDDEGEATMRVNERGCGETLSCGTGLCAT 236 Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + + ++ + GG L ++ D++ V +TG A GK+++ Sbjct: 237 AITLRSKTGID-HWTITVRGGTLRVDVTDDD-VTLTGSATIV--GKVEL 281 >gi|163839484|ref|YP_001623889.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209] gi|162952960|gb|ABY22475.1| diaminopimelate epimerase [Renibacterium salmoninarum ATCC 33209] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 97/303 (32%), Gaps = 37/303 (12%) Query: 6 VDFAKMEGIGNKILVI-DMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-------- 56 V F+K G GN ++I D G HD + + A D + + Sbjct: 12 VSFSKGHGTGNDFILIADPDGVHDIDEATVVAACDRHRGIGADGFIRAIKSRELAEGTAV 71 Query: 57 ---DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-----RMKRKSFTFETIRGILVA 108 + + F+ N DGS + CGNG+R V+FL + T G+ + Sbjct: 72 LDANPHAEWFMDYRNADGSISEMCGNGVRVFVQFLLESELVWLEPGQILPIGTRDGVKLV 131 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + G + + D+ ++ + Sbjct: 132 RRTAAGFSVDMGQWKFTMPQ-----TAEDRGVDSLVTANGLDVARPALSINTGNAHTLVA 186 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL------ESLDLRTWERGVGLT 222 +L DL + P+ G N+ A + +R +ERGVG T Sbjct: 187 LAHRAELDELDLHRAPIVD---PVPEHGSNVEFALPHDPLVVGGIAEISMRVFERGVGET 243 Query: 223 AACGSAACASVVASGCLHKTNRA--VSVKMLGGGL----LIEWHDNNHVFMTGEAKKEWE 276 +CG+ ACA+ A+ + + GG + + HV ++G A Sbjct: 244 LSCGTGACAAAAATRFWAGEGAPAEWKINVPGGSVVAKFFVAEDQTEHVELSGPAVIVAR 303 Query: 277 GKL 279 G Sbjct: 304 GVF 306 >gi|154509066|ref|ZP_02044708.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC 17982] gi|153798700|gb|EDN81120.1| hypothetical protein ACTODO_01583 [Actinomyces odontolyticus ATCC 17982] Length = 307 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 92/302 (30%), Gaps = 39/302 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 K G GN +V +D+ + S D + + F+ Sbjct: 13 VKAHGAGNSFVV--ATDQYDDYDPSEVEVATLCSPAFGIGADGFI---RAVERDGLWFMD 67 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISVDM 120 N DGS+ + CGNG+R V L T GI + Sbjct: 68 YRNADGSKAEMCGNGVRVFVDHLRREGLVDLPVGQTLDVATRGGIKRVTPESEDEGQGAS 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----SMGNPHAIFFVEDDLY 176 + P + D + + + NP V +F D+ Sbjct: 128 YRVDMGPAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETLRGVFLPTVDVS 187 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACA 231 + P G NL + + +R ERGVG T ACG+ CA Sbjct: 188 QI---QQAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQACGTGCCA 244 Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLL------IEWHD------NNHVFMTGEAKKEWEG 277 + +A+ V + GG ++ I+W + VF+TG A + E Sbjct: 245 AAIATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPQITDASVFLTGHATRVAEI 304 Query: 278 KL 279 L Sbjct: 305 HL 306 >gi|330444245|ref|YP_004377231.1| diaminopimelate epimerase [Chlamydophila pecorum E58] gi|328807355|gb|AEB41528.1| diaminopimelate epimerase [Chlamydophila pecorum E58] Length = 276 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 111/273 (40%), Gaps = 28/273 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ + + I L T + D + + Q A DA + I N D Sbjct: 15 YSGAGNRFFL----KTGSPSSPALIRLLCTQAHV--DGFLYLEPSQIA--DAKLAIFNAD 66 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + +L ++++ T T +G+ + VDM P ++ Sbjct: 67 GSRPTMCGNGLRCAIAYLAQKLEKPQITIATDQGVYSGVYFSWERVLVDMTLPEWNFSSH 126 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 + S L F + G PH + F ++ D+A G L H Sbjct: 127 EIVLS---------------GLGKVQVFFIHTGVPHLVVFC-PEIASIDVAVLGRELRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR-AVS 247 F G N++ + S + L +RT+ERG+ +AACG+ A+V + + V Sbjct: 171 TTFAPSGANVNFVEIFSEQQLRIRTYERGLERESAACGTGCIAAVKTALFRGFVKQGEVI 230 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 V + + + + + +++ G E G+L+ Sbjct: 231 VHVSQESMKV-FIEGERIYLEGPVTIESSGRLE 262 >gi|184201226|ref|YP_001855433.1| diaminopimelate epimerase [Kocuria rhizophila DC2201] gi|183581456|dbj|BAG29927.1| diaminopimelate epimerase [Kocuria rhizophila DC2201] Length = 297 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 98/293 (33%), Gaps = 26/293 (8%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQD----------- 57 K G GN +V R ++ + + A+ D ++ +D Sbjct: 7 KAHGTGNDFVVFTDRDGSLDVPPETVAAVCDRHLGLGGDGLIRAVRSRDLEEGRRLLERH 66 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + F+ N DGS Q CGNG+R V L +R A S Sbjct: 67 PDAEWFMDYRNADGSVAQMCGNGVRVFVDHLVREGLVTLPRGARLRIGTRAGVRTVARTS 126 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 + W + + R + MGNPH + + + Sbjct: 127 GGYAVDMGPWSF--TRGELARERGSDCVVTAAGLTVPRPGVSIGMGNPHTVVVLS-EGEK 183 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACAS 232 D A P+ +G N+ L L++R ERGVG T +CG+ ACA+ Sbjct: 184 LDTLDLHTAPAVDPVPVDGTNVEFVVPLEHDDTDLGRLEMRVHERGVGETHSCGTGACAA 243 Query: 233 VVASGCLH--KTNRAVSVKMLGGGLLIEW----HDNNHVFMTGEAKKEWEGKL 279 A+ ++ V++ GG L + + HV + G + +L Sbjct: 244 AAATRFWGGPQSPDRWFVQVPGGVLSVTFVPAPDGTEHVVLAGPVRVVATAEL 296 >gi|109947347|ref|YP_664575.1| diaminopimelate epimerase [Helicobacter acinonychis str. Sheeba] gi|109714568|emb|CAJ99576.1| dapF [Helicobacter acinonychis str. Sheeba] Length = 264 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 15/269 (5%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKR-DFSNLARQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F ++ + +I Sbjct: 60 NSDGSQASMCGNASRCVGLFAYQHHIAPKNHVFLAGQRKISICIEEPNIIESNLGSGDIL 119 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 ++I + D + +++ G PH + FV+ L S L Sbjct: 120 EIISTSGGKKSFSNDSVLAS------IPTFYLIDTGVPHLVGFVK---KKESLNSLNILE 170 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 + + N++IA + + +++ L+T+ERGV T ACG+ A+ A+ + T R Sbjct: 171 LRALRHASDANVNIAFIENKKTIFLQTYERGVEDFTLACGTGMAATFFAANAFYNTPRNA 230 Query: 247 SVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 ++ L + +N +F G + Sbjct: 231 TLIPKSNEHLELSLR-DNEIFYKGAVRYI 258 >gi|281210560|gb|EFA84726.1| hypothetical protein PPL_01718 [Polysphondylium pallidum PN500] Length = 428 Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 12/137 (8%) Query: 157 PFVVSMGNPHAIFFVEDD---------LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 +VSMGNPH + F++D+ L D++ G L +F + N+ V + Sbjct: 291 CVLVSMGNPHCVIFLKDNQGSIADESQLESMDISYIGRKLESDGLFIDSCNVEFVSVIAQ 350 Query: 208 ESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEW-HDNNH 264 L +R WERG G T ACG+ ACA VAS K + ++SV+M GG L+I+W ++N Sbjct: 351 NKLKVRVWERGAGETLACGTGACAVAVASILTGKSVISESISVEMPGGELIIDWNKEDNK 410 Query: 265 VFMTGEAKKEWEGKLDI 281 V+ TG A + +++I Sbjct: 411 VYKTGPATTVYSSEVNI 427 Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 40/133 (30%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAI------------------------------ 35 V F KM G GN ++ I S+ Sbjct: 29 VSFTKMHGAGNDFVLFKREDIKRTIVSNKANGHGHTNGNSNGNNNGNGTSNGNGNYSYVP 88 Query: 36 ---------NALSTDD-NTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85 +++ DQ++++ D + D + I N DGS+ CGNG+RC Sbjct: 89 SLDELAYISKSIANRKLGVGCDQVIIVSDSPSSKSDYEMLIFNNDGSQAMMCGNGVRCFS 148 Query: 86 RFLTSRMKRKSFT 98 +++T + Sbjct: 149 KYITDNRIPSIYN 161 >gi|289642111|ref|ZP_06474263.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata] gi|289508074|gb|EFD29021.1| diaminopimelate epimerase [Frankia symbiont of Datisca glomerata] Length = 332 Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 106/299 (35%), Gaps = 26/299 (8%) Query: 6 VDFA--KMEGIGNKILVIDMRGCHDNITS----DAINALSTDDN-THFDQIMLIHDFQDA 58 + F K G N I ++D R T D + + D + + D + Sbjct: 1 MKFELLKAHGSSNDIFIVDGRPERIFSTPAEVADFVRLVCDRQGPLGGDGLYFVDDSRAV 60 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD----- 113 F N DGS + CGNG+RCV R + R + + T G + Sbjct: 61 PEAFF---FNPDGSSAKLCGNGLRCVGRLVLERREADALDVSTGGGRFRVERIPQVAAGV 117 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S++V++ +P+ + V++ N H + V+D Sbjct: 118 WSVAVELPPVTFRAADVPVVT----TGAEHVDTVIPTLHPALRFTGVAVPNSHLVAVVDD 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS-LESLDLRTWERGVGLTAACGSAACAS 232 + +A G + G N+S R + + +RT+ERG GLT +CGS AS Sbjct: 174 YDENELVAVGGAAAGLPVVLPAGANVSFVRPLTAPGEIFVRTFERGAGLTPSCGSGVVAS 233 Query: 233 VVASGCLHK--TNRAVSVKMLGG--GLLIEWHDNNHVF--MTGEAKKEWEGKLDIKTGK 285 L + + V+ GG + + + + G A + +D++ Sbjct: 234 RAVYSRLGHAPADEPLLVRNPGGCARSFLTPAADGALTPRLEGNATFVYRAVVDLEQLA 292 >gi|32267200|ref|NP_861232.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449] gi|32263253|gb|AAP78298.1| diaminopimelate epimerase [Helicobacter hepaticus ATCC 51449] Length = 264 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 27/285 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD-NITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + F K GN L+ D + T+ A + + D ++ + + Sbjct: 1 MRFVKYSSNGNDFLIFTTHTYDDGSRTALAKSVCERHNGIGADGMVAVIPAINKDYAYEW 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGS + CGN R V + + F + L+ D IS+ + Sbjct: 61 EFYNADGSVAKMCGNASRSVGHYAYVEGIAQKRHFFLSKVGLIGITLDDNDISLVQSD-- 118 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + D P +++ ++ G PH + FV + Sbjct: 119 --------LGECALLQEDIIESNPYG---VKSWNLLDSGVPHLVGFVSQE-NALPTQKDR 166 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 L ++ V+L ++ T+ERGV +T ACG+ A A + L Sbjct: 167 LLEDLRHKYNANVSLGF---IGEGAISYSTYERGVEDITQACGTGAIAVFALALKLGLCE 223 Query: 244 RAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWI 287 ++ + L + ++++H+ G+ K+ I T +W+ Sbjct: 224 KSAILIPPSKELLHLYMNEDSHILFKGKVKR-------IATCEWL 261 >gi|258507109|ref|YP_003169860.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG] gi|257147036|emb|CAR86009.1| Diaminopimelate epimerase [Lactobacillus rhamnosus GG] gi|259648479|dbj|BAI40641.1| diaminopimelate epimerase [Lactobacillus rhamnosus GG] Length = 335 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQD 57 MV K+ G N ++D +T+ + A + D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L + Sbjct: 59 PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-V 171 + SV++ +P A D L V++ NPH I F Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSL---KFTAVAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++L DL G + AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 KEELASPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H R +V GG + H ++ + + G A + Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHERYWIELIGNATVTATITVPDEA 295 Query: 281 IKTGKWIKKNE----DDEAY 296 +++GK + + AY Sbjct: 296 LESGKLTQATFQPTGEQAAY 315 >gi|227495840|ref|ZP_03926151.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434] gi|226834597|gb|EEH66980.1| diaminopimelate epimerase [Actinomyces urogenitalis DSM 15434] Length = 341 Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 89/319 (27%), Gaps = 49/319 (15%) Query: 9 AKMEGIGNKILVIDMRGCHDNITS-DAINALSTDDNTHFDQIMLIHDF-----------Q 56 K N L++ C +++ D D + + Sbjct: 25 IKGHATENDFLLLVDPDCQVALSAGDVAEVCDRHAGVGADGFVRVVRTCALPGVHRFHEA 84 Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAKEN 111 + F+ N DGS Q CGN +R + L S T T G Sbjct: 85 VPEAEWFMDYYNADGSLAQMCGNAIRLMAEVLVCEGLVTLDDGDSVTIGTRGGARTLTRA 144 Query: 112 RDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFV 171 ++ L D+ + + + + Sbjct: 145 GQLWTVDMGPARLIRP-EHALGEVDDEGWDTAVTVPGLEGPRAALSIAMPNPHTVVALSE 203 Query: 172 EDDLYHYDLASFGNLLA--KHPMFSEGVNLSIARVTSL--------------------ES 209 E +L A + A P+ +G NL + Sbjct: 204 EAELDAALFAGLTDSDAPVYEPVPPQGTNLELVVALGEESDGDAAESTGQDAEASVRVGR 263 Query: 210 LDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS--VKMLGGGLLIE-----WHDN 262 +R ERGVG T +CG+ CA VA + + +LGG + + W + Sbjct: 264 ARMRVLERGVGETRSCGTGCCAVAVALHEWEGEDAPTDYLIDVLGGQVGVHVGADPWAPD 323 Query: 263 NHVFMTGEAKKEWEGKLDI 281 V +TG A G+L + Sbjct: 324 ATVLLTGPATI--TGRLTL 340 >gi|255507016|ref|ZP_05382655.1| diaminopimelate epimerase [Chlamydia trachomatis D(s)2923] gi|289525474|emb|CBJ14951.1| diaminopimelate epimerase [Chlamydia trachomatis Sweden2] gi|296435026|gb|ADH17204.1| diaminopimelate epimerase [Chlamydia trachomatis E/150] gi|296438746|gb|ADH20899.1| diaminopimelate epimerase [Chlamydia trachomatis E/11023] Length = 275 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 28/267 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ + + + L ++ D + + + A DA + + N D Sbjct: 15 YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + + + + ET RG+ K + VDM P Sbjct: 66 GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNQVLVDMTLPDWKKAER 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L M F + G PH + FV DL + +G+ L H Sbjct: 126 KLTHVLPGMPEQ--------------VFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170 Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 EGVN+ + + L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273 +V L+ + + VF+ G Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPVSL 257 >gi|15605157|ref|NP_219942.1| diaminopimelate epimerase [Chlamydia trachomatis D/UW-3/CX] gi|166154643|ref|YP_001654761.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu] gi|166155518|ref|YP_001653773.1| diaminopimelate epimerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802857|ref|YP_002888051.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT] gi|237804779|ref|YP_002888933.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311238|ref|ZP_05353808.1| diaminopimelate epimerase [Chlamydia trachomatis 6276] gi|255317540|ref|ZP_05358786.1| diaminopimelate epimerase [Chlamydia trachomatis 6276s] gi|255348797|ref|ZP_05380804.1| diaminopimelate epimerase [Chlamydia trachomatis 70] gi|255503337|ref|ZP_05381727.1| diaminopimelate epimerase [Chlamydia trachomatis 70s] gi|301335910|ref|ZP_07224154.1| diaminopimelate epimerase [Chlamydia trachomatis L2tet1] gi|8134393|sp|O84437|DAPF_CHLTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807489|sp|B0BC67|DAPF_CHLTB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|229807505|sp|B0B802|DAPF_CHLT2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|3328860|gb|AAC68027.1| Diaminopimelate Epimerase [Chlamydia trachomatis D/UW-3/CX] gi|165930631|emb|CAP04128.1| diaminopimelate epimerase [Chlamydia trachomatis 434/Bu] gi|165931506|emb|CAP07082.1| diaminopimelate epimerase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273079|emb|CAX09992.1| diaminopimelate epimerase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274091|emb|CAX10885.1| diaminopimelate epimerase [Chlamydia trachomatis B/Jali20/OT] gi|296435953|gb|ADH18127.1| diaminopimelate epimerase [Chlamydia trachomatis G/9768] gi|296436880|gb|ADH19050.1| diaminopimelate epimerase [Chlamydia trachomatis G/11222] gi|296437814|gb|ADH19975.1| diaminopimelate epimerase [Chlamydia trachomatis G/11074] gi|297140314|gb|ADH97072.1| diaminopimelate epimerase [Chlamydia trachomatis G/9301] gi|297748560|gb|ADI51106.1| Diaminopimelate epimerase [Chlamydia trachomatis D-EC] gi|297749440|gb|ADI52118.1| Diaminopimelate epimerase [Chlamydia trachomatis D-LC] Length = 275 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 28/267 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ + + + L ++ D + + + A DA + + N D Sbjct: 15 YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + + + + ET RG+ K + VDM P Sbjct: 66 GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLPDWKKAER 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L M F + G PH + FV DL + +G+ L H Sbjct: 126 KLTHVLPGMPEQ--------------VFFIDTGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170 Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 EGVN+ + + L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273 +V L+ + + VF+ G Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPVSL 257 >gi|199598990|ref|ZP_03212398.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001] gi|199590098|gb|EDY98196.1| diaminopimelate epimerase [Lactobacillus rhamnosus HN001] Length = 335 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 128/320 (40%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQD 57 MV K+ G N ++D +T+ + A + D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLTTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L + Sbjct: 59 PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKNGQSAFKVHTDFADLAVAKQSPLASG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-V 171 + SV++ +P A D L V++ NPH I F Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGGDRIVDTVLPAIHPSL---KFTAVAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++L DL G + A +P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 KEELASPDLERIGKMLNANNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H R +V GG + H ++ + + G A + Sbjct: 236 ATTLAFILTHPQEAAFERVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295 Query: 281 IKTGKWIKKNE----DDEAY 296 +++GK + + AY Sbjct: 296 LESGKLAQATFQPTGEQAAY 315 >gi|150021739|ref|YP_001307093.1| diaminopimelate epimerase [Thermosipho melanesiensis BI429] gi|149794260|gb|ABR31708.1| Diaminopimelate epimerase [Thermosipho melanesiensis BI429] Length = 232 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 43/268 (16%) Query: 10 KMEGIGNKILVID--MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K GN ++ D N + + D D + + F+ Sbjct: 5 KYTANGNSFILFDITDTSLTSNEKKELVIKKCQDR----DGALFVE---TKDGMYFMEYY 57 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGNG R + +L K F T GI+ K + I + M P++ Sbjct: 58 NKDGSKAPFCGNGARAFLFYLIKEKKANVDKFLTESGIVSGKILNEK-ILIKMPNPLVAR 116 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 K+ ++ + +++++G PH + FV+ D+ H D+ + G Sbjct: 117 KI---------------------NVENFSGYLLTVGVPHFVTFVD-DIEHIDVKNIGKK- 153 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAV 246 N++ S + +RT+ERGV T +CGS AS + V Sbjct: 154 ---IRNKLDANVNFVEKISKNEIKVRTFERGVEDETLSCGSGVTASAIV-----LNESKV 205 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 V GG L I + N+ ++ G+ + Sbjct: 206 KVHTRGGILHI-YTLNDGFYLEGDVENV 232 >gi|76789164|ref|YP_328250.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13] gi|123606873|sp|Q3KLS0|DAPF_CHLTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|76167694|gb|AAX50702.1| diaminopimelate epimerase [Chlamydia trachomatis A/HAR-13] Length = 275 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 59/267 (22%), Positives = 100/267 (37%), Gaps = 28/267 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ + + + L ++ D + + + A DA + + N D Sbjct: 15 YSGAGNSFIL-----GESMPSLEDVLFLCQEEMV--DGFLCVESSEIA--DAKLTVFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + + + + ET RG+ K + VDM P Sbjct: 66 GSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQGKFFSMNRVLVDMTLPDWKKAER 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L M F + G PH + FV DL + +G+ L H Sbjct: 126 KLTHVLPGMPEQ--------------VFFIDAGVPHVVVFVS-DLSKVPVQEWGSFLRYH 170 Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA--V 246 EGVN+ + + L + T+ERG T +CG+ AS + + + + + Sbjct: 171 EDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVAADIFSLGQDFSI 230 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAKK 273 +V L+ + + VF+ G Sbjct: 231 AVCSRSRNLIKIFSEKGKVFLEGPVSL 257 >gi|46190611|ref|ZP_00121261.2| COG0253: Diaminopimelate epimerase [Bifidobacterium longum DJO10A] Length = 280 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 37/288 (12%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63 + +D + T+D + L D ++ + F Sbjct: 2 VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGTKWF 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG R + F + F T G+ + + Sbjct: 61 MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + + D + + V MGNPH + +ED + Sbjct: 121 VFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDAFASLPV 173 Query: 181 AS---FGNLLAKHPMFSEGVNLSIARVTSLESLD------LRTWERGVGLTAACGSAACA 231 P+ N+ RV ++ +R ERG G T +CG+ CA Sbjct: 174 VESLDLVTKPVVAPVIESDQNVEFVRVDDIDQNTGVGEATMRVNERGCGETLSCGTGLCA 233 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + + GG L ++ D++ V +TG A + L Sbjct: 234 TGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 279 >gi|23464713|ref|NP_695316.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705] gi|23325279|gb|AAN23952.1| diaminopimelate epimerase [Bifidobacterium longum NCC2705] Length = 280 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 37/288 (12%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63 + +D + T+D + L D ++ + F Sbjct: 2 VYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPDFVSDLSDDQLSDVLAGGAKWF 60 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG R + F + F T G+ + + Sbjct: 61 MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRGNMRPYGAN 120 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + + D + + V MGNPH + +ED + Sbjct: 121 VFQVEM-------GEWKIGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDAFASLPV 173 Query: 181 AS---FGNLLAKHPMFSEGVNLSIARVTSLES------LDLRTWERGVGLTAACGSAACA 231 P+ N+ RV ++ +R ERG G T +CG+ CA Sbjct: 174 VESLDLVTKPVVAPVIESDQNVEFVRVDDIDQSTGVGEATMRVNERGCGETLSCGTGLCA 233 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + + GG L ++ D++ V +TG A + L Sbjct: 234 TGIVLQAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 279 >gi|33241871|ref|NP_876812.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183] gi|33236380|gb|AAP98469.1| diaminopimelate epimerase [Chlamydophila pneumoniae TW-183] Length = 261 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 26/264 (9%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ L+ + + L + D + + + DA + I N D Sbjct: 19 YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 69 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + L S+ + + T G+ + VDM + Sbjct: 70 GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 129 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L D + ++ + G PHA+ + ++ DL+ G L H Sbjct: 130 RLESRPDPLPKE--------------VVCIHTGVPHAVVIL-PEISTLDLSILGPFLRYH 174 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV 248 F +GVN++ ++ L +RT+ERGV TAACG+ A AS + + ++ + Sbjct: 175 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 234 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAK 272 GG L+ + V++ G Sbjct: 235 HTWGGELMTVSQNRGRVYLQGSVT 258 >gi|15618430|ref|NP_224715.1| diaminopimelate epimerase [Chlamydophila pneumoniae CWL029] gi|15836050|ref|NP_300574.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138] gi|16752523|ref|NP_444785.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39] gi|8134395|sp|Q9Z833|DAPF_CHLPN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gi|4376808|gb|AAD18659.1| Diaminopimelate Epimerase [Chlamydophila pneumoniae CWL029] gi|8163393|gb|AAF73646.1| diaminopimelate epimerase [Chlamydophila pneumoniae AR39] gi|8978890|dbj|BAA98725.1| diaminopimelate epimerase [Chlamydophila pneumoniae J138] gi|269303394|gb|ACZ33494.1| diaminopimelate epimerase [Chlamydophila pneumoniae LPCoLN] Length = 257 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 26/264 (9%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ L+ + + L + D + + + DA + I N D Sbjct: 15 YSGAGNRFLL-----GETLPEVEDVRFLCQETRV--DGFLYLKPS--SCADAQLIIFNSD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RC + L S+ + + T G+ + VDM + Sbjct: 66 GSRPTMCGNGLRCAIAHLASQKGKSDISVSTDSGLYSGYFYSWDRVLVDMTLADWRASVH 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L D + ++ + G PHA+ + ++ DL+ G L H Sbjct: 126 RLESRPDPLPKE--------------VVCIHTGVPHAVVIL-PEISTLDLSILGPFLRYH 170 Query: 191 PMF-SEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV 248 F +GVN++ ++ L +RT+ERGV TAACG+ A AS + + ++ + Sbjct: 171 QTFSPDGVNVNFVQILGHCQLRVRTYERGVEGETAACGTGALASALVVSNSYGWKESIQI 230 Query: 249 KMLGGGLLIEWHDNNHVFMTGEAK 272 GG L+ + V++ G Sbjct: 231 HTWGGELMTVSQNRGRVYLQGSVT 254 >gi|217076301|ref|YP_002334017.1| diaminopimelate epimerase [Thermosipho africanus TCF52B] gi|217036154|gb|ACJ74676.1| diaminopimelate epimerase [Thermosipho africanus TCF52B] Length = 237 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 98/273 (35%), Gaps = 39/273 (14%) Query: 5 MV--DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 M+ F GN +V D+ G N + L + D ++ + Sbjct: 1 MIVEKFT---ATGNSFIVCDILGSKLNDKEKSNFVLKNSKDR--DGVIFVEKRD---GQF 52 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 F+ N DG+ CGNG R + +L + K + + + Sbjct: 53 FMDYFNKDGNRAAFCGNGARTFLYYLMKKGYVKEDLVKFYTYAGEITGKLTKNGVMIKMP 112 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + + + F++++G PH + FV+ ++ D+ Sbjct: 113 ASNMPQKLTIDS--------------------FSGFLLNVGVPHFVIFVD-NVETIDVNK 151 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHK 241 G L N++ +V +++ +RT+ERGV T ACGS AS + Sbjct: 152 IGKQL----REKLNSNINFVQVLDEKTIKIRTFERGVEAETLACGSGTTASAYVFNKSNL 207 Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + VK GG L + + ++ +++ G + Sbjct: 208 --EKIEVKARGGTLFVHFLNDG-IYLEGGVENV 237 >gi|71901194|ref|ZP_00683297.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] gi|71729038|gb|EAO31166.1| Diaminopimelate epimerase [Xylella fastidiosa Ann-1] Length = 212 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 8/209 (3%) Query: 74 VQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 Q CGNG RCV +L + F ++ + +V+MG P+ + + IP Sbjct: 7 AQQCGNGARCVAAWLVRDGSLADEHFLIDSPVQAHSVRCIGKDEYAVEMGLPVFEPERIP 66 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP 191 L+ + + + VSMGNPHA+ V+ + + G LL +H Sbjct: 67 LSGFPNACAEYVLSLQG----EVLRCGAVSMGNPHAVVEVDL-IDVAPVERIGPLLQQHV 121 Query: 192 MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKML 251 F E VN+ +V + LR +ERG G T ACGS ACA+ V + R V V + Sbjct: 122 AFPESVNVGFVQVIDPGLVRLRVYERGAGETLACGSGACAAAVVLMQRGRVGRDVRVVLP 181 Query: 252 GGGLLIEWH-DNNHVFMTGEAKKEWEGKL 279 GG L ++W V ++G A+ ++G Sbjct: 182 GGTLRVQWPVSGGPVTLSGPARCVFDGVW 210 >gi|34558429|ref|NP_908244.1| diaminopimelate epimerase [Wolinella succinogenes DSM 1740] gi|34484148|emb|CAE11144.1| PUTATIVE DIAMINOPIMELATE EPIMERASE [Wolinella succinogenes] Length = 255 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 39/282 (13%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN ++ D ++ A D ++++ + N Sbjct: 5 KYCASGNDFILFHALKKSDR-SALAQILCDRHRGIGADGLIVLLPH--SLFHFEWEFYNS 61 Query: 70 DGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS CGNG R + K F T G + A K Sbjct: 62 DGSGADMCGNGARAAALYAYHQGLAPKEQRFLTGAGPISATVED---------------K 106 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF--VEDDLYHYDLASFGNL 186 + + + + + +++ G PH + F DL +L+ Sbjct: 107 EVEIELTEASILQKEIERAGH------TWWLIDTGVPHLVSFAAQGIDLDSAELSKL--- 157 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRA 245 + N+++A+ + + + LRT+ERGV T ACG+ A+ + + Sbjct: 158 -----RWEFNANVNLAK-LTPDGIALRTFERGVEAETLACGTGMAATFWRAKEEGWVKES 211 Query: 246 VSVKMLGGG-LLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKW 286 ++ L + + +F G+ K + +++ + Sbjct: 212 ATLIPASQERLSLRIDKS-KIFFKGKVNKVCDTITSLESLNF 252 >gi|322378405|ref|ZP_08052859.1| diaminopimelate epimerase [Helicobacter suis HS1] gi|322380086|ref|ZP_08054342.1| diaminopimelate epimerase [Helicobacter suis HS5] gi|321147493|gb|EFX42137.1| diaminopimelate epimerase [Helicobacter suis HS5] gi|321149161|gb|EFX43607.1| diaminopimelate epimerase [Helicobacter suis HS1] Length = 254 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 90/271 (33%), Gaps = 25/271 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K GN L+ + ++ A D ++++ + Sbjct: 1 MHLYKYCASGNDFLITSQFKSG-DYSALAKQLCHRHYGFGADGLVVLLPHH--ELAYTWE 57 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124 N DGSE + CGN RC + + F + GI+ + G Sbjct: 58 FYNADGSEAEMCGNASRCAGFYAYKQGLAPCQHAFLSKAGIIRVEVQSLGQ--------- 108 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + + + +L + +++ G PH ++FV L Sbjct: 109 --------TSALVESNLGVPKWLQTLNLEGKTWYLLDTGVPHLVYFV-PSLKQIPSTKIA 159 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTN 243 + F N++IA + ++ L T+ERGV +T ACG+ A +A+ H Sbjct: 160 LMQTLRERF--NANVNIACIIDDHTIQLATYERGVEDITLACGTGMAAVFMAAYQEHHLM 217 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 ++ L +N V+ G + Sbjct: 218 PQATLIPPSQEKLSLCLKDNEVYFKGMVEYV 248 >gi|304309744|ref|YP_003809342.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] gi|301795477|emb|CBL43675.1| Diaminopimelate epimerase [gamma proteobacterium HdN1] Length = 334 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 91/316 (28%), Gaps = 43/316 (13%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVD 61 + + F KM G LVID+ + I + I L+ F ++++ D Sbjct: 25 TGRLQFTKMYASGEDFLVIDLVSQYYRIEAQQIQRLAHPQLGIVFGALLMVLPPATPDAD 84 Query: 62 AFIRIINCDGSEVQSCGNG--------------MRCVVRFLTSRMKRKSFTFETIRGILV 107 R+ +G E+ + ET G L Sbjct: 85 FRFRLFTANGEEIGRAQEATHPAHLLEMLGAARCVAQFVRQRQLTNKHQLLIETPLGELT 144 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 + +D P +S H PV + G Sbjct: 145 VQIGEFEEACIDFLPPAWANT---FTKSQSFNLVTPSHSTPVTLIHTPAG---ETGTHSH 198 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA---- 223 + D++ L + + L H +F + + +V + + + LR + T Sbjct: 199 ALLMADNMDRKALQAIASALENHTLFPKQATIMFMQVENRKRVHLRFFRARTESTFLTED 258 Query: 224 --ACG--------SAACASVVASGCLHKTNRAVSVKM----LG---GGLLIEWHDNNHVF 266 A G + A + + V V + G L I W +N V Sbjct: 259 AGAAGALEVGGRDTDAFIAAAVGLRQQLIDHPVQVLLHAPTPGFSAHTLGIHWQGDNQVM 318 Query: 267 -MTGEAKKEWEGKLDI 281 + G A +EG + + Sbjct: 319 RLGGTATTVFEGSIAL 334 >gi|320457755|dbj|BAJ68376.1| diaminopimelate epimerase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 279 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 92/288 (31%), Gaps = 37/288 (12%) Query: 19 LVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQ--------------DASVDAF 63 + +D + T+D + L D ++ + + F Sbjct: 1 MYLD-KSGKFEPTADEVRFLCDRHFGIGGDGLIRLTRPEFVSDLSDDQVSAVLAGGAKWF 59 Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDM 120 + N DGS + CGNG R + F + F T G+ + + Sbjct: 60 MDYRNADGSLAEMCGNGTRAITLFAQREGVADSTEPFRLGTRAGVKILTPRSNTKPYGAN 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 I + + + D + + V MGNPH + +ED + Sbjct: 120 VF------QIEMG-EWKVGETDAYEVTIPGTEGSARGTFVDMGNPHVVAVIEDAFASLPV 172 Query: 181 AS---FGNLLAKHPMFSEGVNLSIA------RVTSLESLDLRTWERGVGLTAACGSAACA 231 P+ N+ + T + +R ERG G T +CG+ CA Sbjct: 173 VESLDLVTKPVVAPVIESDQNVEFVRIDEIDQNTGVGEATMRVNERGCGETLSCGTGLCA 232 Query: 232 SVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + + + + GG L ++ D++ V +TG A + L Sbjct: 233 TGIVLRAKTGI-SHWDITVRGGTLRVDVTDSD-VKLTGAATLVADIDL 278 >gi|229550991|ref|ZP_04439716.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1] gi|258538297|ref|YP_003172796.1| diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705] gi|229315586|gb|EEN81559.1| diaminopimelate epimerase [Lactobacillus rhamnosus LMS2-1] gi|257149973|emb|CAR88945.1| Diaminopimelate epimerase [Lactobacillus rhamnosus Lc 705] Length = 335 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 33/320 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINAL-----STDDN--THFDQIMLIHDFQD 57 MV K+ G N ++D +++ + A + D ++ I D Sbjct: 1 MVTLQKVHGSENSFFLLDETQLKQPLSTSQLAAFTKQVTNRQTGWLGGADGVLAITDA-- 58 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD---- 113 + ++N DGS + CGNG+R V R+L+ + + +F T L + Sbjct: 59 PGTAGKMTVVNTDGSLAKLCGNGLRTVARYLSEKTGQSAFKVHTDFADLAVAKQSPLASG 118 Query: 114 -GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF-V 171 + SV++ +P A D L V++ NPH I F Sbjct: 119 VPAYSVEISPVSFAAADLPFANLGVDRIVDTVLPAIHPSL---KFTAVAVPNPHLIAFVS 175 Query: 172 EDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 +++L DL G + AK+P F EGVN++ A + ++L RT+ERGVG T ACG+ Sbjct: 176 KEELVSPDLERIGKMLNAKNPYFPEGVNVTFAEILGKDTLFARTYERGVGFTNACGTGMS 235 Query: 231 ASVVASGCLHKTNRA----VSVKMLGGGLLIEWHDNNH---VFMTGEAKKEWEGKLD--- 280 A+ +A H A +V GG + H ++ + + G A + Sbjct: 236 ATTLAFILTHPQEAAFECVNTVYNPGGMVKTMVHHDHGRYWIELIGNATVTATITVPDEA 295 Query: 281 IKTGKWIKKNE----DDEAY 296 +++GK + + AY Sbjct: 296 LESGKLTQATFQPTGEQAAY 315 >gi|329947108|ref|ZP_08294484.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526285|gb|EGF53302.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 316 Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 94/315 (29%), Gaps = 48/315 (15%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDN-THFDQIMLIHD----------- 54 + K N L++ C ++ I A+ D + + Sbjct: 11 ELIKGHATLNDFLMLVDPSCEVAVSGADIAAVCDRHGGIGADGFVRVVRTTALPGAGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-----KRKSFTFETIRGILVAK 109 + F+ N DGS + CGN R L S +S T T G Sbjct: 71 ASVPEAEWFMDYYNADGSVAEMCGNATRLFAHVLDSEGLRPIADGESVTIGTRGGARTVT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 D + + D D + P R V M NPH + Sbjct: 131 RLGDLW------TVDMGPARLTRPEEADDEGWDTTVMVP-GLAGPRAALSVEMPNPHTVV 183 Query: 170 --FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRT 214 ED+L A + A + + + + +R Sbjct: 184 ALGEEDELEAAVFAGLTDSAAPVVYDPLPEVGTNLELVVPLGEEVDPDTQAPVGIARMRV 243 Query: 215 WERGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFM 267 ERGVG T +CG+ CA+ VA + + GG + + +++ V + Sbjct: 244 LERGVGETLSCGTGCCAAAVALHTWTGPGAPEDYRLLVPGGEIGVHVGANPLAEDSTVLL 303 Query: 268 TGEAKKEWEGKLDIK 282 TG A G++ I Sbjct: 304 TGPAAV--TGRVTIA 316 >gi|237753277|ref|ZP_04583757.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430] gi|229375544|gb|EEO25635.1| diaminopimelate epimerase [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 90/272 (33%), Gaps = 31/272 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTD-DNTHFDQIMLIHDFQDASVDAFIRI 66 F+K GN ++ + ++ + + D ++++ + D Sbjct: 3 FSKYSASGNDFILTHTFKFKEGSWAELAKRICHRQEGVGADGLIVLKPH--LTYDFEWEF 60 Query: 67 INCDGSEVQSCGNGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 N DGS CGNG R + F T G++ A+ + + + + Sbjct: 61 YNADGSVANMCGNGSRAAALYAKDLNLAPNRQEFLTGAGVINAEIFAELESKILVESALT 120 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 K+I F N +++ G PH + +L DL + Sbjct: 121 KAKVI----------------QENIQEFGVNWWLIDTGVPHLV-CEGANLNKEDLRAL-- 161 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 N++IA + + + RT+ERGV T ACG+ A K + Sbjct: 162 ------RHKYNANINIA-MLEKDCVRARTFERGVEDETLACGTGMAAMFYYLKEKDKVSN 214 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 K L + +F+ G +K + Sbjct: 215 PCCFKPASNEELFLREEEGRIFLKGNVRKICD 246 >gi|291302029|ref|YP_003513307.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728] gi|290571249|gb|ADD44214.1| diaminopimelate epimerase [Stackebrandtia nassauensis DSM 44728] Length = 271 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 58/283 (20%), Positives = 93/283 (32%), Gaps = 33/283 (11%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQ--------DA 58 F+K G GN +++ +T+ I L D ++ + + Sbjct: 12 FSKGHGTGNDFVILADPDNAAPLTNWQIADLCDRRSGIGGDGLLRVVRSAKHPEAVELSS 71 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + F+ N DGS + CGNG+R R+L + + + G Sbjct: 72 EAEWFMDYYNADGSVAEMCGNGVRVFARYLLEHDLAEPGDIPLATRAGLRTVSCVGDEFR 131 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 P + VSMGNPH + V+ Y Sbjct: 132 VDMGPARF----------------EGASEAIVDGRRYAGTRVSMGNPHLVCRVD---DPY 172 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 L +F GVN+ + +R ERGVG T +CG+ A A+ + Sbjct: 173 TLDLHKVPAVDAQLFPTGVNVEFITGP-ANHITMRVHERGVGETRSCGTGAVAAAAVALG 231 Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 T +V + GG L + + TG A EG ++ Sbjct: 232 GVGT---CTVDVPGGTLTVTVSTDTTTL-TGPAVIVAEGHTNL 270 >gi|259503053|ref|ZP_05745955.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041] gi|259168919|gb|EEW53414.1| diaminopimelate epimerase [Lactobacillus antri DSM 16041] Length = 334 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 71/294 (24%), Positives = 121/294 (41%), Gaps = 32/294 (10%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI--------------M 50 M K+ G N ++D + + L+ + + Sbjct: 1 MAQLLKVHGSQNSFFILDQTKLAQPLADGELRQLAQ-------GLTDSHNGLLGGADGLL 53 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 ++ A +R+IN DGSE CGNG+R V R++ R + +F +T+ L ++ Sbjct: 54 VVDRPTRPGAVAQMRVINADGSEASMCGNGLRTVARYVAERDGQTTFKVDTMDSSLQVRQ 113 Query: 111 NRDGSISVDMGEPILDW-KLIPLARSFDKMDRDRFHIGPVNHLFLR-NPFVVSMGNPHAI 168 + + V + + A FD + DR PV L +++ NPH I Sbjct: 114 ATELAPGVLAFAVEISPVRFDKTALPFDNLGHDRLLGTPVPELAPGLTFTTLAVPNPHLI 173 Query: 169 FF-VEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 F + + L G +P FS+GVN++ A++ + L +RT+ERGVG T ACG Sbjct: 174 SFVSQQTIEGPLLGELGPYLNGDNPYFSDGVNINFAQILGPQKLFVRTYERGVGFTNACG 233 Query: 227 SAACASVVASGCLHKT----NRAVSVKMLGGGL-LIEWHDNNH--VFMTGEAKK 273 + A+ +A LH + ++V GG + I + H + + G A Sbjct: 234 TGMSATSLAFALLHPASAAFDEPITVYNPGGMVKTIAHFTHQHYWIELIGNATF 287 >gi|296139513|ref|YP_003646756.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] gi|296027647|gb|ADG78417.1| diaminopimelate epimerase [Tsukamurella paurometabola DSM 20162] Length = 290 Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 100/297 (33%), Gaps = 30/297 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLI------------ 52 +DF K G N +++ G ++T + AL D ++ I Sbjct: 4 IDFLKGHGTENDFVILPDPGVDIDLTPQLVAALCDRRAGIGADGVLRIARAGDLADAGVL 63 Query: 53 --HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 A D F+ N DGS + CGNG+R LT+ + G Sbjct: 64 DALPAGVAREDWFMDYRNSDGSIAEMCGNGVRVFAHVLTASS--------LVPGPEFVVG 115 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH--AI 168 +R G V + + + +A + V +GNPH + Sbjct: 116 SRAGGRPVVVHHADPEAADVSVAMGPATVFGSS---SAGVDGRDLAGIAVDVGNPHLACV 172 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 L H +F G N+ + ++ +R ERG G T +CG+ Sbjct: 173 VPGLTAADLGGLDVASPPSFDHGLFPHGTNVEVITPLVDGAVHMRVHERGSGETRSCGTG 232 Query: 229 ACASVVASGCL-HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 A+ VA+ + V V + GG + + + V + G ++ G + I Sbjct: 233 TVAAAVAALRSDDRQEGVVGVHVPGGTVTVTVAPDGAV-LRGPSRIVATGTVRIGAL 288 >gi|148270400|ref|YP_001244860.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1] gi|170289205|ref|YP_001739443.1| diaminopimelate epimerase [Thermotoga sp. RQ2] gi|281412707|ref|YP_003346786.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10] gi|147735944|gb|ABQ47284.1| diaminopimelate epimerase [Thermotoga petrophila RKU-1] gi|170176708|gb|ACB09760.1| Diaminopimelate epimerase [Thermotoga sp. RQ2] gi|281373810|gb|ADA67372.1| diaminopimelate epimerase [Thermotoga naphthophila RKU-10] Length = 236 Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 41/266 (15%) Query: 11 MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67 GN L++D + D + +N D ++ + F+ Sbjct: 3 YSANGNTFLIVDNTQKRIPEEKKPDFV-----RENVGDLDGVIFVELVDGK---YFMDYY 54 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS CGNG R ++L R K F + K D SI V M Sbjct: 55 NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPG----- 109 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 ++ + D + V +G PH + V+ + D+ G L Sbjct: 110 ----VSEKKEMKVDD------------YEGYFVVVGVPHFVMEVKG-IDELDVEKLGRDL 152 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246 + G N+ V + L +RT+ERGV T ACG+ SV A + V Sbjct: 153 ----RYKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVT-SVFAVYRDKTGAKEV 206 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAK 272 +++ GG L ++ +N +F+ G+ K Sbjct: 207 KIQVPGGTLFLK-EENGEIFLRGDVK 231 >gi|15644270|ref|NP_229322.1| diaminopimelate epimerase [Thermotoga maritima MSB8] gi|4982088|gb|AAD36589.1|AE001799_21 diaminopimelate epimerase [Thermotoga maritima MSB8] Length = 236 Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 96/266 (36%), Gaps = 41/266 (15%) Query: 11 MEGIGNKILVIDMRGC--HDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67 GN L++D + D + +N D ++ + F+ Sbjct: 3 YSANGNTFLIVDNTQKRIPEEKKPDFV-----RENVGDLDGVIFVELVDGK---YFMDYY 54 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS CGNG R ++L R K F + K D SI V M Sbjct: 55 NRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPG----- 109 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 ++ + + V +G PH + V+ + D+ G L Sbjct: 110 ----VSEKKEMKVD------------GYEGYFVVVGVPHFVMEVKG-IDELDVEKLGRDL 152 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246 + G N+ V + L +RT+ERGV T ACG+ + V + V Sbjct: 153 ----RYKTGANVDFYEVL-PDRLKVRTYERGVERETKACGTGVTSVFVV-YRDKTGAKEV 206 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEAK 272 +++ GG L ++ +N +F+ G+ K Sbjct: 207 KIQVPGGTLFLK-EENGEIFLRGDVK 231 >gi|315453203|ref|YP_004073473.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179] gi|315132255|emb|CBY82883.1| diaminopimelate epimerase [Helicobacter felis ATCC 49179] Length = 265 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 83/267 (31%), Gaps = 25/267 (9%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINC 69 K GN L+ + ++ A D ++++ N Sbjct: 5 KYCASGNDFLITHQFT-PQDRSALAKRICDRHYGFGADGLVVLLPHSK--HAYTWEFYNA 61 Query: 70 DGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS CGN RCV + + TF + G++ + + + K Sbjct: 62 DGSCASMCGNASRCVGLYAYQQGLAPSKHTFLSGAGVISLEVLNLNPQGGVVQSNLGAPK 121 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 L + ++ G PH + FV+ + Sbjct: 122 -----------------RLESLQLEGQIWHLLDTGVPHLVHFVDH-PNKIPTHKTPQMQT 163 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247 F N++ A + ++ L T+ERGV +T ACG+ A + H N Sbjct: 164 LRARFD--ANVNFAYIQDPRTIKLATYERGVEDITLACGTGMAAVFACAYYQHNHNPQAV 221 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + G L + ++ ++ G+ Sbjct: 222 LIPPSGEALNWYLRDDELYFQGQVHFI 248 >gi|222099945|ref|YP_002534513.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359] gi|221572335|gb|ACM23147.1| Diaminopimelate epimerase [Thermotoga neapolitana DSM 4359] Length = 237 Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 94/265 (35%), Gaps = 41/265 (15%) Query: 11 MEGIGNKILVIDMRGCHD--NITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFIRII 67 GN L++D N D + ++ D ++ + + F+ Sbjct: 4 YSANGNTFLMVDNTEKKISENEKPDFV-----RNHVGDLDGVIFVEKVGEK---FFMDYY 55 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS CGNG R ++L R K F + K D I W Sbjct: 56 NRDGSMATFCGNGARAFSQYLIDRGWVKQRKFTFLSRAGEIKVFLDDGI----------W 105 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLL 187 +P +++ D + V +G PH I V+ ++ D+ G LL Sbjct: 106 VRMPAVSEVKELEVDGY-----------RGHFVVVGVPHFILEVK-NVDEVDVEKLGRLL 153 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAV 246 N+ + L +RT+ERGV T ACG+ A ++ + Sbjct: 154 ----RHKTNANVDFYE-VAQGFLKVRTYERGVERETKACGTGVTAVFFVHHSRTG-SKEM 207 Query: 247 SVKMLGGGLLIEWHDNNHVFMTGEA 271 V + GG L + +N +++ G+ Sbjct: 208 KVLVPGGTLFLR-EENGEIYLKGDV 231 >gi|291276326|ref|YP_003516098.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198] gi|290963520|emb|CBG39351.1| putative diaminopimelate epimerase [Helicobacter mustelae 12198] Length = 253 Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 89/273 (32%), Gaps = 27/273 (9%) Query: 10 KMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRIIN 68 K G GN L+ + C D L D +++ Q + N Sbjct: 5 KYSGSGNDFLITHL--CQHPSPKDLAKELCHRHLGIGADGFIILKPHQ--TYAYAWEFYN 60 Query: 69 CDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWK 128 DGS CGN RCV + K+ + + +++ +G+P Sbjct: 61 SDGSSALMCGNASRCVAHYANKHHLAKAQHIFWAGARAIEVHVKKNTVATHLGKPS---- 116 Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 + + + + G PH + F + L ++ Sbjct: 117 --------------TVETLSLISSYASYAYKIDTGVPHLVIFAK---SQKSLPAYATQEL 159 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVS 247 K N+++ + ++L + T+ERGV +T ACG+ A+ LH + + Sbjct: 160 KDLREEYNANVNVVYAKNPKTLYVHTYERGVEDITLACGTGMAAASGVYHFLHPDHCLFT 219 Query: 248 VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 LI + ++ G+ + +D Sbjct: 220 CLPPSREELILKVEEQNIIFEGKVRHIATCYID 252 >gi|293192304|ref|ZP_06609415.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309] gi|292820219|gb|EFF79213.1| diaminopimelate epimerase [Actinomyces odontolyticus F0309] Length = 307 Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 92/302 (30%), Gaps = 39/302 (12%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAIN---ALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 K G GN +V +D+ + S D + + F+ Sbjct: 13 VKAHGAGNSFVV--ATDQYDDYDPSEVEVATLCSPAFGIGADGFI---RAVERDGLWFMD 67 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISVDM 120 N DGS+ + CGNG+R V L T GI + Sbjct: 68 YRNADGSKAEMCGNGVRVFVDHLRREGLVDLPIGQTLDVATRGGIKRVTPESEDEGQGAS 127 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----SMGNPHAIFFVEDDLY 176 + P + D + + + NP V +F D+ Sbjct: 128 YRVDMGSAASPARETIDVRVPGIDAVLGGIWVDMPNPHTVVELADEETLRGVFLPTVDVS 187 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACA 231 + P G NL + + +R ERGVG T ACG+ CA Sbjct: 188 QIP---QAQRPSYDPAPQAGTNLELVVDLTEPGGERGHIVMRVLERGVGETQACGTGCCA 244 Query: 232 SVVASGCLHKTNRA--VSVKMLGGGLL------IEWHD------NNHVFMTGEAKKEWEG 277 + +A+ V + GG ++ I+W + VF+TG A + E Sbjct: 245 AALATALRRGPGAPTQWVVDIPGGTVIVGLDGVIDWSGESPRITDASVFLTGPATRVAEI 304 Query: 278 KL 279 L Sbjct: 305 HL 306 >gi|315604447|ref|ZP_07879513.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str. F0310] gi|315314153|gb|EFU62204.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 180 str. F0310] Length = 307 Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 60/300 (20%), Positives = 96/300 (32%), Gaps = 35/300 (11%) Query: 9 AKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 K G GN +V D +D ++ S D + F+ Sbjct: 13 FKAHGAGNSFVVATDQFDQYDPSEAEVATLCSPAFGIGADGFI---RAVQRDGSWFMDYR 69 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-----FETIRGILVAKENRDGSISVDMGE 122 N DGS+ + CGNG+R V L T GI + Sbjct: 70 NADGSKAEMCGNGVRVFVDHLRREGLVDLPLGATLDVVTRGGIKRVTPLEEDGGHGAHYR 129 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV----SMGNPHAIFFVEDDLYHY 178 + P + + + + + + NP V + D+ Sbjct: 130 VDMGAAASPASETIEVRIPGVDGVLGGLWVDMPNPHTVVELADEETLRGVTLPTIDVSR- 188 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVT-----SLESLDLRTWERGVGLTAACGSAACASV 233 + G + P + G NL + SL + +R ERGVG T ACG+ CA+ Sbjct: 189 --LAPGQRPSYAPEPASGTNLELVVDLTTPGSSLGHIAMRVLERGVGETQACGTGCCAAA 246 Query: 234 VASGCLHKTNRA--VSVKMLGGGLL------IEWHD------NNHVFMTGEAKKEWEGKL 279 +A+ V + GG + I+W N V +TG A + + +L Sbjct: 247 LATALRRGATAPTQWVVDVPGGRVSVGLDGVIDWSGGTPRVTNASVLLTGPAMRVADIRL 306 >gi|154248770|ref|YP_001409595.1| diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1] gi|154152706|gb|ABS59938.1| Diaminopimelate epimerase [Fervidobacterium nodosum Rt17-B1] Length = 245 Score = 95.6 bits (236), Expect = 8e-18, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 40/274 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + K GN ++ID + + + L + +N D + + + + Sbjct: 5 LKIYKYNANGNTFILIDCLDNTLDDSEKSEIVLKSVENR--DGAIFVE---RNNNLFHMD 59 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT-FETIRGILVAKENRDGSISVDMGEPI 124 N DG CGNG R V +L F T G+L A + D S+ + + + Sbjct: 60 YFNRDGKRAAFCGNGARTFVNYLKEYYGLSGEVLFSTTSGMLKALVDEDVSVQMPNPKYV 119 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 ++ G PH + VE ++ D+ + Sbjct: 120 KQIS-----------------------YESFQGALIETGVPHIVIRVE-NVDFIDIENVA 155 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASG----CL 239 N++ V + L +RT+ERGV T +CGS ++ Sbjct: 156 P----EIRRIFDANVNFYDVVQEKFLRVRTFERGVERETKSCGSGITSTSFYYKYYILKD 211 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKK 273 K + V LGG L + + +N V++ G + Sbjct: 212 GKQPDEIKVLSLGGVLHVLFKEN-EVYLEGRVEH 244 >gi|169837507|ref|ZP_02870695.1| diaminopimelate epimerase [candidate division TM7 single-cell isolate TM7a] Length = 123 Score = 95.2 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 MG H++ FV D + + +F + VN++ +V + +++ TWERG G Sbjct: 1 MGTDHSVIFVNDFSDYDIDEIGKKIENYTDLFPKKVNVNFVKVYDRKRMEVITWERGAGR 60 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277 T ACG+ A AS V + + V+VK+ GG L+IE+ N FMTG ++K EG Sbjct: 61 TLACGTGATASAVLAKTFGFVDDKVNVKVPGGQLVIEYEGGENDAFMTGPSEKIAEG 117 >gi|468713|emb|CAA55224.1| dapF [Pseudomonas aeruginosa] Length = 108 Score = 94.8 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 1/108 (0%) Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + S G L HP F + N+ +V LR WERGVG T ACG+ ACA+ V Sbjct: 1 VDSAPVHSLGPQLEVHPRFPKKANIGFLQVLDPHHARLRVWERGVGETQACGTGACAAAV 60 Query: 235 ASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKLDI 281 A V + + GG L IEW V MTG A + +EG++ + Sbjct: 61 AGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL 108 >gi|239616517|ref|YP_002939839.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1] gi|239505348|gb|ACR78835.1| diaminopimelate epimerase [Kosmotoga olearia TBF 19.5.1] Length = 237 Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 42/263 (15%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 GN V+D R + L + D ++ + D F+ N D Sbjct: 6 YSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADK--DGVIFVE-------DHFMDYFNRD 56 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G + CGNG R V F+ TFE+ G + + ++ + Sbjct: 57 GKRAEFCGNGARTYVAFIHEITGETKITFESYAGRIEGFVDGLYNVKMPPVN-------- 108 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 + G ++ +++G PH + E D + + Sbjct: 109 --------------YHGSREFQGIK-GEFLTVGVPHFVI--EGDTEKLEWETLIP----- 146 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSVK 249 + N+++ + L +RT+ERGV T ACG+ A A+ + V+++ Sbjct: 147 IRWELNTNINVYKEIEPGKLRIRTFERGVEGETGACGTGATATAW-CYARGRKLLQVTLQ 205 Query: 250 MLGGGLLIEWHDNNHVFMTGEAK 272 GG L++ + + ++++ G + Sbjct: 206 ANGGELVVSFKE-GNIYLGGGVE 227 >gi|116491952|ref|YP_803687.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745] gi|116102102|gb|ABJ67245.1| diaminopimelate epimerase [Pediococcus pentosaceus ATCC 25745] Length = 329 Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 36/315 (11%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQI--------------M 50 M+ ++ G N +++D + D + L+ Q+ + Sbjct: 1 MIKLLRVHGSENSFILLDQEQLEIPMNLDQLIQLAI-------QVTNNQTGLLGGADGLL 53 Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 ++ A V +++IN DGS CGNG+R V R+L + + F +T + L Sbjct: 54 VVSSSDHAGVRGRMQVINNDGSFASMCGNGLRTVARYLAEKYEENDFLVQTDQADLHVGR 113 Query: 111 -----NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 N + V++ + K +P+ ++ + + L + V + Sbjct: 114 VATIGNGLPTYQVEISPVSFNTKNLPMQIE-NQDKLFNAPVRDFDDQLLFSAVAVPNPHL 172 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 AI L A +P F +GVN+S RV L ++T+ERGVG T AC Sbjct: 173 IAIDNNNRLSTKKLAELGHRLNASNPWFPKGVNVSFGRVIGQNQLFVQTYERGVGFTNAC 232 Query: 226 GSAACASVVASGCLH----KTNRAVSVKMLGGGLLIE---WHDNNHVFMTGEAKKEWEGK 278 G+ A+ + L+ + + + GG + H + + G A + + Sbjct: 233 GTGMSATSLVWSLLNDGQTRLDEVNDIFNPGGMVKTRVNQIHGAYTIDLIGNAT--FTHQ 290 Query: 279 LDIKTGKWIKKNEDD 293 + I + + N + Sbjct: 291 IWIDEDQLRQNNLEQ 305 >gi|326773669|ref|ZP_08232952.1| diaminopimelate epimerase [Actinomyces viscosus C505] gi|326636899|gb|EGE37802.1| diaminopimelate epimerase [Actinomyces viscosus C505] Length = 316 Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 85/312 (27%), Gaps = 44/312 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHD----------- 54 + K N L++ GC I+ I A D + + Sbjct: 11 ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK 109 + F+ DGS + CGN R L +S T T G Sbjct: 71 ASVPEAEWFMDYYRADGSVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + + + + D+ + + +S + Sbjct: 131 RLGELWTVDMGPARLASPEE-----ADDEGWDTAVDVPGLAGQRAALSVEISGPHTVVAL 185 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRTWE 216 E +L A + A + + T + +R E Sbjct: 186 GEESELKAAAFAGLTDSAAPVAYDPAPEAGTNLELVAPLGEETDPDTQSSVGIARVRVLE 245 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFMTG 269 RGVG + + G+ CA VA + + GG + + ++ V +TG Sbjct: 246 RGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGADPLGEDGSVLLTG 305 Query: 270 EAKKEWEGKLDI 281 A G++ + Sbjct: 306 PATI--TGRVTV 315 >gi|255029081|ref|ZP_05301032.1| diaminopimelate epimerase [Listeria monocytogenes LO28] Length = 271 Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 12/253 (4%) Query: 18 ILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQIMLIHDFQDASVDAFIRIINCD 70 ++D G + + +D L ++ D I+ + +A +R++N D Sbjct: 7 FSLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGILYVTKSSEAGPIGQMRVVNSD 66 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW-KL 129 GS CGNG+R V R+L + ET++ IL K+ + + + K Sbjct: 67 GSIASMCGNGLRTVARYLLEKHALTEAKVETMKAILDVKKATSLGFDIPTYQVEISPVKF 126 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF--GNLL 187 + + F+ VS+ NPH I FV+ + D L Sbjct: 127 NAESLPMNVGVEKLFNQVVPELDAELAFSAVSVPNPHLITFVDQTVLDSDRQETLASYLN 186 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRA 245 +++P F +GVN+S + S +++ +RT+ERGVG T ACG+A A + L K Sbjct: 187 SENPYFPDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDKDTFETP 246 Query: 246 VSVKMLGGGLLIE 258 ++V GG + + Sbjct: 247 LNVYNDGGRVQVT 259 >gi|145636698|ref|ZP_01792365.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] gi|145270224|gb|EDK10160.1| diaminopimelate epimerase [Haemophilus influenzae PittHH] Length = 65 Score = 92.9 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTHFDQIMLIHDFQDASVDAFI 64 + F+KM G+GN +V+D + T + I L+ FDQ++++ D +D Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIIN 68 RI N Sbjct: 61 RIFN 64 >gi|325068456|ref|ZP_08127129.1| diaminopimelate epimerase [Actinomyces oris K20] Length = 316 Score = 92.1 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 83/310 (26%), Gaps = 42/310 (13%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHD----------- 54 + K N L++ GC I+ I A D + + Sbjct: 11 ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGGGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK 109 + F+ DG+ + CGN R L +S T T G Sbjct: 71 ASVPEAEWFMDYYRADGTVAEMCGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + + + + D+ + ++ +S + Sbjct: 131 RLGELWTVDMGPARLASPEE-----AEDEGWDTAVVVPGLDGPRAALSVEISGPHTVVAL 185 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRTWE 216 E +L A + + + + T + +R E Sbjct: 186 GEEGELEAAAFAGLTDSADPVAYDPAPEVGTNLELAVPLGEETDPDTQSSVGIARMRVLE 245 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEWHD-----NNHVFMTG 269 RG+G T + G+ CA VA + + GG + + ++ V +TG Sbjct: 246 RGMGETLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVHVGSDPLGADSSVLLTG 305 Query: 270 EAKKEWEGKL 279 A + Sbjct: 306 PAAITARITV 315 >gi|119946940|ref|YP_944620.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] gi|119865544|gb|ABM05021.1| diaminopimelate epimerase [Psychromonas ingrahamii 37] Length = 382 Score = 92.1 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 102/313 (32%), Gaps = 70/313 (22%) Query: 6 VDFAKMEGIGNKILVIDMRGC----HDNITSDAINALSTDDNTHFDQIMLIH-------- 53 + F K GN +++D D+++ A A + D +++I Sbjct: 4 IPFVKYTSCGNSFVIVDETEQSLLSEDDMSRFAFQATNISFGVGCDNLLIIQRCNELSLQ 63 Query: 54 -----------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI 102 Q+ + R+ G E CGNG+ C+ +L + S + T Sbjct: 64 SINRSRDYWIQPPQEEQAEFVFRMFEPSGEEALCCGNGLMCIASYLLDKHGISSASIMTE 123 Query: 103 RGILVAKENRDGSI------SVDMGEPI--------------LDWKLIPLARSFDKMDRD 142 + K + G+ V++G P +D + + K D Sbjct: 124 IPLATPKVIKIGTDQNRVGSWVNLGHPRLTPPELVNGEYAALVDPAIHEMQELVVKFRAD 183 Query: 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF------------------- 183 ++ +V G PH + F + D + A + Sbjct: 184 DLKAYTTDNELRIRALLVFTGEPHLVIFPDSDFSAPEQADYIFAGSNQGVERRESFGSWL 243 Query: 184 ------GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVAS 236 +F G+N++ AR + ++ R +ERG+ T ACG+ A A Sbjct: 244 VEHIGNYMNNHMRHIFPAGINVNFARRLASGVIENRCFERGINRETLACGTGALAVAYIY 303 Query: 237 GCLHKTN-RAVSV 248 +HK N V V Sbjct: 304 SQMHKLNISEVDV 316 >gi|83646371|ref|YP_434806.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] gi|83634414|gb|ABC30381.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396] Length = 413 Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 102/308 (33%), Gaps = 71/308 (23%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHD----NITSDAINALSTDDNTHFDQIMLIH----- 53 + V F K GN +++D ++ A A ST D ++++ Sbjct: 12 AKTVPFVKYTSCGNNFVIVDATEDSVLAEMEWSAFAPKATSTTFGIGCDNLLVVQRSNAR 71 Query: 54 --------------DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 ++ D R+ +G E CGNG+ C+ FL + Sbjct: 72 TLDAIAKDRNYWDAKPDLSAADYVFRMFEPNGEEAACCGNGLICIADFLRRKHGVTVSNI 131 Query: 100 ETIRGILVAKENRDGSI-----SVDMGEPILDW-------KLIPLARSFDKMDRDRFHIG 147 T + GS+ V++G P L PL + D ++ Sbjct: 132 ATEIPLSSPNIISIGSLGYDGSWVNLGMPRHTPTQLVNRDSLHPLDDTIDVIEELTIQFR 191 Query: 148 PVNHLFLRN-------PFVVSMGNPHAIFFVEDDLYHYDLASF----------------- 183 + + ++V G PH + F + D +LASF Sbjct: 192 RDDLKPYTDASTLTIKGYLVFTGEPHLVIFPDHDFSVPELASFIFGATPEGHTPEDRRRG 251 Query: 184 -----------GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACA 231 +F +GV+++ AR+ +L+S+ R +ERG+ T AC + A A Sbjct: 252 LGAWLVHRIGSFINSRCRHIFPDGVSVNFARIHNLDSVSNRCFERGINRETLACSTGALA 311 Query: 232 SVVASGCL 239 L Sbjct: 312 VAYVVQQL 319 >gi|254674294|emb|CBA10078.1| Diaminopimelate epimerase [Neisseria meningitidis alpha275] Length = 101 Score = 89.8 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 DD+ + G+L+ H F E VN+ ++ S ++ LR +ERGVG T ACG+ ACA+ Sbjct: 5 DDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGVGETQACGTGACAA 64 Query: 233 VVASGCLHKTN--RAVSVKMLGGGLLIEWHDNNHVFM 267 VVA L + + V V + GG L IEW V M Sbjct: 65 VVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMM 101 >gi|320534674|ref|ZP_08035115.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133108|gb|EFW25615.1| diaminopimelate epimerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 316 Score = 88.7 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 85/313 (27%), Gaps = 44/313 (14%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINA-LSTDDNTHFDQIMLIHD----------- 54 + K N L++ GC I+ I A D + + Sbjct: 11 ELIKGHATLNDFLMLVDPGCEVAISGADIAAVCDRHSGIGADGFVRVVRTTALPGAGAFA 70 Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR-----KSFTFETIRGILVAK 109 + F+ DGS + GN R L +S T T G Sbjct: 71 ASVPEAEWFMDYYRADGSVAEMSGNAARLFAHVLDREGLCPIADGESVTIGTRGGARTIT 130 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + + + + D+ + + +S + Sbjct: 131 RLGELWTVDMGPVRLTSPEE-----ADDEGWDTAVVVPGLVGQRAALSVEISGPHTVVAL 185 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSE-------GVNLSIARVTSLE------SLDLRTWE 216 E +L A + + + + + + +R E Sbjct: 186 GEEGELEAAAFAGLTDSTDPVAYDPAPEAGTNLELVVPLGEESDPDTHSPVGIARMRVLE 245 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA--VSVKMLGGGLLIEW-----HDNNHVFMTG 269 RGVG + + G+ CA VA + + GG + + +++ V +TG Sbjct: 246 RGVGESLSYGAGCCAVAVALHAWTGPGAPEDYRLLVPGGEIGVRVVADPLGEDSSVLLTG 305 Query: 270 EAKKEWEGKLDIK 282 A G++ + Sbjct: 306 PAAI--TGRVTVA 316 >gi|326432604|gb|EGD78174.1| diaminopimelate epimerase [Salpingoeca sp. ATCC 50818] Length = 462 Score = 88.3 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 5/135 (3%) Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESL 210 R ++V MGNPHA+ ++ + D+ G+ + F + VN+ +V + + Sbjct: 328 PQPRPVWIVDMGNPHAVVLLDTSVDDVDVHKLGSALQSMRACFPDSVNVEFMQVLTPTHV 387 Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLH--KTNRAVSVKMLGGGLLIEWHDNNH--VF 266 LR +ERG G T ACG+ ACA+V A+ + ++V M GG L + W + H + Sbjct: 388 RLRIFERGAGETLACGTGACAAVAAAVLHGHVLASAGITVSMRGGDLTVHWTGHPHAPLT 447 Query: 267 MTGEAKKEWEGKLDI 281 MTG A + G + + Sbjct: 448 MTGPATCCFAGAITL 462 Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDN-----ITSD---AINALSTDDNTHFDQIMLIHDFQD 57 + F KM+G+GN +V+D + D FDQ++L+ Sbjct: 14 LRFWKMQGLGNDFVVVDGVRQPHEVVHRLLDPDHGTLKRLADRRFGVGFDQLLLVQASAT 73 Query: 58 AS 59 A Sbjct: 74 AP 75 >gi|325982001|ref|YP_004294403.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] gi|325531520|gb|ADZ26241.1| diaminopimelate epimerase [Nitrosomonas sp. AL212] Length = 279 Score = 87.9 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 112/274 (40%), Gaps = 30/274 (10%) Query: 9 AKMEGIGNKILVIDMRGCHDN-ITSDAIN-ALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 KM+G GN L++D I+ AL+T +T D I+ + Q ++I Sbjct: 6 TKMDGCGNSFLLVDEMKNPVPGFDRARISHALATQHDT--DGILYVDQQQGMPT---MKI 60 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 + DG+E CGNG+RC R+ +S F I G + + D D Sbjct: 61 FDRDGTEETMCGNGLRCATRYF-RDTYVRSNVFNIITGDGLKEVFVDNDCVEVNLGAARD 119 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 ++ I ++++ P VV +G+ ++ Sbjct: 120 YRQI---------------DQNCHYVYTGVPHVVVIGSEISLETARAQGQSLRNDKSLCE 164 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 L H EGVN++ T+ + LRT+E GV +T +CG+ + AS + + + Sbjct: 165 LVGH---PEGVNVNFIWRTTDSIITLRTFEVGVEDVTQSCGTGSAASAYVAAKVFGIDLP 221 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + LGG L I +D + ++G + ++GK+ Sbjct: 222 ILTHSLGGSLRIR-NDGGGLSISGPTR--YQGKV 252 >gi|304407413|ref|ZP_07389066.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] gi|304343854|gb|EFM09695.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9] Length = 253 Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 99/274 (36%), Gaps = 27/274 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 + F K E GN +V++ H S D +++ D++V +R Sbjct: 1 MQFWKFEAEGNSYIVVESSNLHAVDIP---AICSKRTGLSGDGLLVAEWLTDSTV--HMR 55 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + N DG+E CGNG RCV F + I+ +R + Sbjct: 56 VFNADGTEAPMCGNGARCVAAFAYVNRPQLRDQDIVIKAQGATVTHRLAGEEGMKFNATI 115 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 ++ PL + + R ++ +G + + L + V++ + I+ D Sbjct: 116 RFERDPLINKYGEESRYQYVVGSPHLVILTDLEAVNLTHEGPIYEATFD----------- 164 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGC-LHKTNR 244 G N+ A V + + WERGVG+ C + + A+ +A + Sbjct: 165 ---------GGTNVMFASVVDRGVIRVLPWERGVGVVEGCATGSAAAAMAVALEMPDWPL 215 Query: 245 AVSVKMLGGGLLIEWHDNNHVF-MTGEAKKEWEG 277 V G + +EW+ + V M G EG Sbjct: 216 ESEVLTPQGCVRVEWNAMDKVLCMEGNVSLVAEG 249 >gi|154148142|ref|YP_001406080.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] gi|153804151|gb|ABS51158.1| diaminopimelate epimerase [Campylobacter hominis ATCC BAA-381] Length = 247 Score = 87.5 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 81/260 (31%), Gaps = 40/260 (15%) Query: 34 AINALSTDDNTHFDQIMLIHDFQ---------------DASVDAFIRIINCDGSEVQSCG 78 A + D +++I + + +D N DGS+ CG Sbjct: 2 ARKICNHHKGIGADGLIVIIKNKSEISNKISSLILDLNNDKIDFAWDFYNSDGSKADMCG 61 Query: 79 NGMRCVV-RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137 NG R +++ K+ F T GI+ A+ + Sbjct: 62 NGSRAAALFAYENKIANKNMKFLTGAGIINAEICEINKHLAI----------------VE 105 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGV 197 G PH + FV+ DL +++ NL Sbjct: 106 SELTKPVKKAENFSENGFLWSFYDTGVPHLVTFVK-DLNDFNIEVARNL-----RKKYNA 159 Query: 198 NLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256 N++ A L +RT+ERGV T ACG+ A + V V G +L Sbjct: 160 NVNFASFKDE-ILRVRTYERGVEDETLACGTGMAACFITGVINFNLQNVVKVMPKSGEIL 218 Query: 257 IEWHDNNHVFMTGEAKKEWE 276 +++ VF G ++ Sbjct: 219 YLRKNDDKVFFKGAVSHSFD 238 >gi|213612318|ref|ZP_03370144.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 55 Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 + F+KM G+GN +V+D + + + I LS FDQ++++ D Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPE 55 >gi|237750660|ref|ZP_04581140.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879] gi|229373750|gb|EEO24141.1| diaminopimelate epimerase [Helicobacter bilis ATCC 43879] Length = 267 Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 93/271 (34%), Gaps = 20/271 (7%) Query: 9 AKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHD--FQDASVDAFIRI 66 +K GN L+ N A+ + D ++++ +D+++ Sbjct: 11 SKYCASGNDFLIFHSF-LEQNRAKMAVELCNRFYGIGADGMVVVLPYESKDSNIAYKWEF 69 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILD 126 N DGS CGN R V + + G + + I + Sbjct: 70 YNADGSFAGMCGNASRAVSLYAFHNKLATQNH-SFLSGAGIIDTSIKEIIDSKHAYVQSN 128 Query: 127 WKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNL 186 + ++ + + H+ +R P +V + ++L S Sbjct: 129 LGE--YVLQGNIVENKKGSVYEFEHIIMRIPHLVYFAT---------SMKEFNLLSNDLE 177 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRA 245 H N++IA + + + T+ERGV +T ACG+ ACA V+ KT Sbjct: 178 FLSHLRHKYDANVNIAIRENDKIYYV-TFERGVENITQACGTGACAVYVSLRDFSKTY-- 234 Query: 246 VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 + L + ++ N ++ +G K + Sbjct: 235 TLIPPSKEKLQVSYN-NGLIYFSGLVTKVCD 264 >gi|307299383|ref|ZP_07579184.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915179|gb|EFN45565.1| diaminopimelate epimerase [Thermotogales bacterium mesG1.Ag.4.2] Length = 238 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 98/279 (35%), Gaps = 43/279 (15%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M+ A GN LV+D R + + L D D + + D + Sbjct: 1 MMRGAYYTATGNTFLVVDSRERKLSDMEKRLLVLKYVDGR--DGAIFVER------DF-M 51 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 NCDG+ CGNG R V F+ + KR F + G ++ K + S+ + Sbjct: 52 DYYNCDGNRAAFCGNGARTYVYFIHEKEKRNLVEFSSHAGNVLGKVDDLVSVRMPSPR-- 109 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + +V +G PH + + D Sbjct: 110 ---------------------FLGTFEEEDYSGEIVVVGVPHLVIEGDTD-------KVD 141 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243 N+++ V SL +RT+ERGV T ACGS A + V Sbjct: 142 WNALLPLRHLYDANINVFTVKKEGSLRIRTFERGVEGETGACGSGATSVVWLYSRRTGCE 201 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 V ++ GG L + + + ++ G +K E +L+++ Sbjct: 202 -KVILQANGGDLTVSFR-DGSAYLGGGVEKCSE-ELELQ 237 >gi|157364800|ref|YP_001471567.1| diaminopimelate epimerase [Thermotoga lettingae TMO] gi|157315404|gb|ABV34503.1| Diaminopimelate epimerase [Thermotoga lettingae TMO] Length = 240 Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 86/263 (32%), Gaps = 39/263 (14%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 GN L+ D + D L + T D + + D F+ N D Sbjct: 6 YSANGNTFLIFDSMTNL--LGDDTKRDLILNYITDQDGAIFVEKS---GQDFFMDYFNRD 60 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAK-ENRDGSISVDMGEPILDWKL 129 G CGNG R V FL K K + ISV M PI K Sbjct: 61 GKRAIFCGNGARAFVAFLRDEGFLKDDHLIFHTKSGTLKGFIQKEKISVQMPGPIYLGKR 120 Query: 130 IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAK 189 + + ++ +G H + V+ + D+ G L Sbjct: 121 V---------------------VEEFEGHLIRVGVLHFVLKVK-SVDRMDVIHEGKRLRA 158 Query: 190 HPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNRAVSV 248 N+ ++ + +RT+E+GV T ACGS A A V Sbjct: 159 L----TDANIDFYQILEKNCVKMRTFEKGVERETKACGSGAAAVFSICQTDRLL-----V 209 Query: 249 KMLGGGLLIEWHDNNHVFMTGEA 271 ++ GG L + + + +F+ GE Sbjct: 210 EVPGGILCVYINGD-SIFLQGEV 231 >gi|329942547|ref|ZP_08291357.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10] gi|332287178|ref|YP_004422079.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] gi|313847775|emb|CBY16765.1| putative diaminopimelate epimerase [Chlamydophila psittaci RD1] gi|325507378|gb|ADZ19016.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] gi|328815457|gb|EGF85445.1| diaminopimelate epimerase [Chlamydophila psittaci Cal10] Length = 260 Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 114/275 (41%), Gaps = 34/275 (12%) Query: 4 SMVDFAK---MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 SM+ K G GN+ ++ I +L + D +L+ ++ Sbjct: 7 SMI--YKHSVYSGAGNRFIL-----SETCPDITIIPSLCKEYQV--DGFLLVLPS--STA 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + I N DGS CGNG+RCVV L+ +K+ + ET G + + + VDM Sbjct: 56 DAKLIIFNDDGSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P ++ L+ + + R+ F + G PH + FVE D+ + Sbjct: 116 TLPDWNYTCHTLSHTLPGVPRE--------------VFSIHTGVPHLVVFVE-DVSCVPV 160 Query: 181 ASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASG 237 +G+ L H +G N++ + LRT+ERG+ + A A++V + Sbjct: 161 DLWGSFLRYHEDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAALVVAQ 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEA 271 +N + + G +LI+ + + V++ G Sbjct: 221 RYGLSNTQIPIWTW-GDILIKISLEGDRVYLEGPV 254 >gi|169836438|ref|ZP_02869626.1| Diaminopimelate epimerase [candidate division TM7 single-cell isolate TM7a] Length = 193 Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 13/186 (6%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSD----AINALSTDDNTHFDQIMLIHDFQDASV 60 M+ F K +G GN +++ + + + A + D ++++ Sbjct: 1 MLKFEKYQGAGNDFVIVSEKELIEKGIPEYGEFASQVCNRHFGIGADGLIILKYVASMP- 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENRDGSISV 118 F+ N DGS+ CGNG+RC + + F +T+ G L + N D Sbjct: 60 --FMFFFNADGSQAPMCGNGIRCFSHYLVNNHLVDGNEFVVKTVPGDLTIRVNYDEEKDD 117 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI----FFVEDD 174 + + + + + MG H++ F + D Sbjct: 118 FSARVNMGKPIFNIKELINTEKEQFLREKINIDGKEIEISYIFMGTDHSVIFVNDFSDYD 177 Query: 175 LYHYDL 180 + + Sbjct: 178 IDEFPF 183 >gi|328914425|gb|AEB55258.1| diaminopimelate epimerase [Chlamydophila psittaci 6BC] Length = 253 Score = 82.5 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 110/265 (41%), Gaps = 29/265 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN+ ++ I +L + D +L+ ++ DA + I N D Sbjct: 8 YSGAGNRFIL-----SETCPDITIIPSLCKEYQV--DGFLLVLPS--STADAKLIIFNDD 58 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS CGNG+RCVV L+ +K+ + ET G + + + VDM P ++ Sbjct: 59 GSRPHMCGNGLRCVVAHLSEVLKKDHISVETDSGRYSGRFHSWERVVVDMTLPDWNYTCH 118 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L+ + + R+ F + G PH + FVE D+ + +G+ L H Sbjct: 119 TLSHTLPGVPRE--------------VFSIHTGVPHLVVFVE-DVSCVPVDLWGSFLRYH 163 Query: 191 P-MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNRAVS 247 +G N++ + LRT+ERG+ + A A++V + +N + Sbjct: 164 EDFLPQGTNVNFIQEIQTGEFQLRTYERGLERESLACGTGATAAALVVAQRYGLSNTQIP 223 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEA 271 + G +LI+ + + V++ G Sbjct: 224 IWTW-GDILIKISLEGDRVYLEGPV 247 >gi|229094039|ref|ZP_04225124.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] gi|228689350|gb|EEL43168.1| Diaminopimelate epimerase [Bacillus cereus Rock3-42] Length = 119 Score = 82.1 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%) Query: 8 FAKMEGIGNKILVIDMRGCHDN-----ITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 F KM G+GN + ++M + ++ ++ + + D ++LI A V Sbjct: 6 FTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNI--NTGIGADGMILICPSDVAPV-- 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKEN 111 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVT 112 >gi|217032381|ref|ZP_03437876.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128] gi|216945948|gb|EEC24564.1| hypothetical protein HPB128_25g29 [Helicobacter pylori B128] Length = 159 Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 3/124 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKR-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 N DGS+ CGN RCV F + ++ + +I Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHVIAPKEHVFLAGKREISICIEEPNIIESNLGNYKIL 119 Query: 128 KLIP 131 IP Sbjct: 120 DTIP 123 >gi|218459115|ref|ZP_03499206.1| diaminopimelate epimerase [Rhizobium etli Kim 5] Length = 124 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 70/123 (56%), Positives = 91/123 (73%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 STTVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETAFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 FI I+N DGS+ Q+CGNG RCVV+ L + RK+FTF+T+ GIL A E+ DG+ISVDMG+ Sbjct: 62 FIDILNSDGSKAQACGNGTRCVVQALAAETGRKAFTFQTVAGILNAVEHEDGTISVDMGK 121 Query: 123 PIL 125 P+ Sbjct: 122 PVF 124 >gi|294623973|ref|ZP_06702765.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601728|gb|EFF45673.1| diaminopimelate epimerase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 132 Score = 79.4 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL 221 NPHA+ V + + G LL + F + VN+ A V + L + R G Sbjct: 17 WVNPHAVVEVGR-VDALPVERLGALLLHNSAFPDSVNVGFAHVVKPGHVRLLVYHRCFGE 75 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEG 277 T ACGS ACA+ L R V V + GG L I W + V M+G A ++G Sbjct: 76 TLACGSGACAAAEVLMHLGHLERDVQVSLPGGELRIRWPGDQQQVVMSGPAVFVFDG 132 >gi|296171791|ref|ZP_06852919.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893962|gb|EFG73729.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 255 Score = 78.7 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 34/266 (12%) Query: 45 HFDQIMLI--------------HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 D ++ + A D ++ N DGS Q CGNG+R +L + Sbjct: 2 GADGVLRVTTAGAALSAGVLDRLPDGVAPGDWYMDYRNADGSIAQMCGNGVRVFAHYLRA 61 Query: 91 RM--KRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA-RSFDKMDRDRFHIG 147 R F + G +R + I + + + Sbjct: 62 SGMEGRDEFVVASAAGPRPVTVHRADA----------TRADITVDMGKANTLGSGGPAFE 111 Query: 148 PVNHLFLRNPFVVSMGNPH--AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205 V +GNPH + L + H F EGVN+ + Sbjct: 112 ATVGGRRFAGLGVDVGNPHLACVDPALTADDLAGLDVAAPVSFDHAQFPEGVNIEVLTAP 171 Query: 206 SLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNH 264 + ++ +R ERGVG T +CG+ A+ VA+ T+ ++V++ GG +++ D Sbjct: 172 ADGAVRMRVHERGVGETRSCGTGTVAAAVAALAAAGTDTGTLAVRVPGGEVVVTVTDATS 231 Query: 265 VFMTGEAKKEWEGKLDIKTGKWIKKN 290 ++ G + G++ +G+W Sbjct: 232 -YLRGPSVLVAHGEV---SGEWWDAQ 253 >gi|29839993|ref|NP_829099.1| diaminopimelate epimerase [Chlamydophila caviae GPIC] gi|29834340|gb|AAP04977.1| diaminopimelate epimerase [Chlamydophila caviae GPIC] Length = 260 Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 29/267 (10%) Query: 11 MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 G GN ++ C + T I+AL ++ D +L+ A DA + I N D Sbjct: 15 YSGAGNCFIL--SETCPEITT---ISALCKEEQV--DGFLLVLPSSVA--DAKLIIFNDD 65 Query: 71 GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 GS + CGNG+RCV+ L+S +K++ + ET GI K + VDM P ++ Sbjct: 66 GSRPKMCGNGLRCVIAHLSSVLKKEDISVETDSGIYFGKFYSWNRVVVDMTLPDWKYRCH 125 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 L + ++ ++ F ++ G PH + FV+ D+ + +G+ L H Sbjct: 126 NLTYTIAQLPQEI--------------FSINTGVPHLVVFVD-DVSCIPIDLWGSFLRYH 170 Query: 191 -PMFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNRAVS 247 EG N++ S +RT+ERG+ + A A++V + +N + Sbjct: 171 ADFSPEGANVNFIEAMSSREFRIRTYERGLERESLACGTGATAAALVVAKRYGLSNIQIP 230 Query: 248 VKMLGGGLLIEWH-DNNHVFMTGEAKK 273 ++ ++I D + V++ G K Sbjct: 231 IRTWS-NIVINISLDRDRVYLEGPVNK 256 >gi|255521593|ref|ZP_05388830.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175] Length = 248 Score = 77.1 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 95/233 (40%), Gaps = 13/233 (5%) Query: 77 CGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 CGNG+R V R+L + ET++ IL K+ + + + Sbjct: 1 CGNGLRTVARYLLEKHALTDAKVETMKAILDVKKATSLGFDIPTYQVEISPVKFAAETLP 60 Query: 137 DKMDRDRFHIGPVNHLFLRNPF-VVSMGNPHAIFFVEDDL-YHYDLASFGNL-LAKHPMF 193 + ++ + L F VS+ NPH I FV+ + + +++P F Sbjct: 61 MHVGVEKLFNQVIPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYF 120 Query: 194 SEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKML 251 +GVN+S + S +++ +RT+ERGVG T ACG+A A + L ++V Sbjct: 121 PDGVNVSFVKRLSDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLNVYND 180 Query: 252 GGGLLIEWHDN--NHVF--MTGEAKKEWEGKL----DIKTGKWIKKNEDDEAY 296 GG + + + + + G A +G + D+ T + + Y Sbjct: 181 GGRVQVTAKKDAAGEISLQLIGNATFVSKGSVRYENDVVTELTNEATAEQGQY 233 >gi|297521540|ref|ZP_06939926.1| diaminopimelate epimerase [Escherichia coli OP50] Length = 56 Score = 76.7 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 227 SAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 S ACA+V V V++ GG L I W H ++MTG A ++G + + Sbjct: 1 SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 56 >gi|207109146|ref|ZP_03243308.1| diaminopimelate epimerase [Helicobacter pylori HPKX_438_CA4C1] Length = 92 Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 F K G GN L+ + ++ A + D ++++ +D D Sbjct: 3 FYKYSGSGNDFLITQSFKKK-DFSNLAKQVCHRHEGFGADGLVVVLPSKD--YDYEWDFY 59 Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF 99 N DGS+ CGN RCV F Sbjct: 60 NSDGSKAGMCGNASRCVGLFAYQHAIASKNHV 91 >gi|116335080|ref|YP_802575.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV] gi|116235361|dbj|BAF35209.1| diaminopimelate epimerase [Candidatus Carsonella ruddii PV] Length = 251 Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 100/265 (37%), Gaps = 26/265 (9%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 M F K+ GN L+ + I+ ++ DQI++I I Sbjct: 1 MYKFLKLHSCGNDFLIFFKKVNDFLISK----FINKKSGITCDQILIIKKIILDKNIIKI 56 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA-KENRDGSISVDMGEP 123 IIN + S +CGNG+R + F + K S ++ + +N+ +I P Sbjct: 57 EIINNNLSRANNCGNGIRSLSWFFLKKKKTNSIIKFPVKNNFILSYKNKKKNIISFFKIP 116 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 K+I R F+ + L N +++ ++ Y L F Sbjct: 117 NFFKKII---------LRIEFYFLKSGFVELNNLHFITI---------IKNIKTYYL--F 156 Query: 184 GNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 + F+ VN+ ++ +R +E+GVG T +CG+ +S ++K Sbjct: 157 FFYNKINFFFNNIVNIEFIQIVKNNEFYIRIFEKGVGETYSCGTGIISSCYYINNINKKI 216 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMT 268 +V LGG I + + + +T Sbjct: 217 NLFNVYSLGGFSKISFF-DKFIILT 240 >gi|89898587|ref|YP_515697.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56] gi|89331959|dbj|BAE81552.1| diaminopimelate epimerase [Chlamydophila felis Fe/C-56] Length = 272 Score = 75.6 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 27/263 (10%) Query: 13 GIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 G GN+ ++ I L + D + + A DA + I N DGS Sbjct: 26 GAGNRFIL-----SEACPDITMIPNLCREHQV--DGFLHVLPSSIA--DAKLIIFNDDGS 76 Query: 73 EVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 CGNG+RCV+ +L+S ++++ + ET G+ K + VDM P ++ L Sbjct: 77 RPNMCGNGLRCVIAYLSSVLEKEEISVETDSGVYSGKFYSWDRVVVDMTLPNWKYRSHQL 136 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP- 191 + + ++ F + G PH I FVE DL + +G+ L H Sbjct: 137 THTLSDLPKE--------------VFSIDTGVPHVIVFVE-DLSSVPVNLWGSFLRYHED 181 Query: 192 MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASGCLHKTNRAVSVK 249 +G N++ + + +RT+ERG+ + A A++V + +N + + Sbjct: 182 FAPQGTNVNFVQAQDFREIHMRTYERGLERESLACGTGATAAALVLAKRYGLSNTKIHIW 241 Query: 250 MLGGGLLIEWHDNNHVFMTGEAK 272 L+ D++ V++ G Sbjct: 242 TWNRILIKISLDSDRVYLEGPVA 264 >gi|62184865|ref|YP_219650.1| diaminopimelate epimerase [Chlamydophila abortus S26/3] gi|62147932|emb|CAH63679.1| putative diaminopimelate epimerase [Chlamydophila abortus S26/3] Length = 260 Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 32/272 (11%) Query: 4 SMVDFAK---MEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 SM+ K G GN+ ++ + +L + D +L+ A Sbjct: 7 SMI--YKPSLYSGAGNRFIL-----SETCPDMTILPSLCKEYQV--DGFLLVLPSSVA-- 55 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA + I N +GS CGNG+RCV+ ++ K+ ET GI + + VDM Sbjct: 56 DAKLIIFNDNGSRPPMCGNGLRCVIAHVSQVGKKDHIFVETDSGIYSGRFESWERVIVDM 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P + L+ + + ++ F ++ G PH + FVE D+ + Sbjct: 116 TLPDWHYTRHLLSHTLPGVPKE--------------VFSINTGVPHLVVFVE-DVSCVPV 160 Query: 181 ASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTA--ACGSAACASVVASG 237 +G+ L H +G N++ + S +RT+ERG+ + A A++V + Sbjct: 161 DLWGSFLRYHEDFVPQGTNVNFIQEISTGEFRIRTYERGLERESLACGTGATAAALVVAR 220 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTG 269 +N + ++ L+ D++ V++ G Sbjct: 221 RYGLSNTQIRIRTWSDVLMKISLDSDRVYLEG 252 >gi|254776058|ref|ZP_05217574.1| diaminopimelate epimerase [Mycobacterium avium subsp. avium ATCC 25291] Length = 231 Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 12/240 (5%) Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 A+ D ++ N DGS Q CGNG+R +L + ET +V Sbjct: 1 PDGVAAGDWYMDYRNADGSVAQMCGNGVRVFAHYLRASG------LETRDEFVVGSLAGP 54 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 ++V + + + ++ + V V A E Sbjct: 55 RPVTVHAADATGADVSVDMGKANTLGSGGKAFEATVGGRRFAGLAVDVGNPHLACLDPEL 114 Query: 174 DLYHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 + ++ F +GVN+ + + + +R ERGVG T +CG+ A+ Sbjct: 115 SVDELAALDVAAPVSFDAAQFPDGVNVEVLTAPAAGVVHMRVHERGVGETRSCGTGTVAA 174 Query: 233 VVASGCLHKTNR-AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNE 291 VA+ + ++V++ GG +++ D ++ G + G++ + +W ++ + Sbjct: 175 AVAALTAAGADTGTLTVRVPGGDVVVTVTDATS-YLRGPSVLVAHGEI---SEEWWQQAQ 230 >gi|326445010|ref|ZP_08219744.1| diaminopimelate epimerase [Streptomyces clavuligerus ATCC 27064] Length = 123 Score = 74.0 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 193 FSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKML 251 + G + L LR ERG G T +CG+ ACA+V A+ V Sbjct: 7 YPHGTFVEFVVRRGPRHLALRVHERGAGETRSCGTGACAAVAAATHHTVPEPGTWIVDTP 66 Query: 252 GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 GG L + H + + +TG A+ G + + G+ Sbjct: 67 GGRLTVTVHLDGTMALTGPAEITTHGTITLPRGE 100 >gi|297613370|ref|NP_001067060.2| Os12g0567200 [Oryza sativa Japonica Group] gi|255670404|dbj|BAF30079.2| Os12g0567200 [Oryza sativa Japonica Group] Length = 68 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 VG T ACG+ ACA VVA+ + R V + GG L IEW + +NH++MTG A+ + G Sbjct: 5 VGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHIYMTGPAEAVFYG 64 Query: 278 K 278 Sbjct: 65 S 65 >gi|313607796|gb|EFR83994.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-208] Length = 168 Score = 73.3 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 12/152 (7%) Query: 157 PFVVSMGNPHAIFFVEDDL-YHYDLASFGNL-LAKHPMFSEGVNLSIARVTSLESLDLRT 214 VS+ NPH I FV+ + + +++P F +GVN+S + + +++ +RT Sbjct: 2 FSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLNDDAIYVRT 61 Query: 215 WERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIEWHDN--NHVF--MT 268 +ERGVG T ACG+A A + L ++V GG + + ++ + + Sbjct: 62 FERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQVTAKEDAAGEISLQLI 121 Query: 269 GEAKKEWEGKL----DIKTGKWIKKNEDDEAY 296 G A +G + DI T + + Y Sbjct: 122 GNATFVSKGSVRYENDIVTELTNEATAEQAQY 153 >gi|260655345|ref|ZP_05860833.1| diaminopimelate epimerase family protein [Jonquetella anthropi E3_33 E1] gi|260629793|gb|EEX47987.1| diaminopimelate epimerase family protein [Jonquetella anthropi E3_33 E1] Length = 257 Score = 71.7 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 71/291 (24%), Gaps = 42/291 (14%) Query: 6 VDFAKMEGIGN------KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 VDF K+ GN + + L + D+ +Q+ + + Sbjct: 3 VDFVKVNPAGNVTIFVTSFV-------PVELQPAVAKELMSSDHVGGEQVGFV-----SG 50 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + + CGN R + E G + G S Sbjct: 51 RRLRMAG-------GEFCGNATRSLAALWAFE--------EGTTGPAQYTVDVSGVTSPI 95 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + +P D + V+ V G H + D Sbjct: 96 QVTVQAEG--MPGVFRADVLMPQPLGQDEVSLEGYAAFRVDFGGIVHYVVEGAPDEKVIS 153 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 A + + + + + +C S + A Sbjct: 154 AARTQMGYGRW----DAFGVMFLQG-DRLDPYVEVNGVSGMWENSCASGSSAVACLLQSR 208 Query: 240 HKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKN 290 R S++ GG L + W V ++G G+ + W + Sbjct: 209 TPKGR-ASLRQPGGTLSVSWDGRG-VLLSGPVAIVARGEAFLSELSWEEAG 257 >gi|315283053|ref|ZP_07871329.1| diaminopimelate epimerase [Listeria marthii FSL S4-120] gi|313613312|gb|EFR87180.1| diaminopimelate epimerase [Listeria marthii FSL S4-120] Length = 184 Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 12/168 (7%) Query: 141 RDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL-YHYDLASFGNL-LAKHPMFSEGVN 198 F+ VS+ NPH I FV+ + + +++P F +GVN Sbjct: 2 EKLFNQVVPELDAELAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVN 61 Query: 199 LSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLL 256 +S + +++ +RT+ERGVG T ACG+A A + L ++V GG + Sbjct: 62 VSFVKRLRDDAIYVRTFERGVGFTNACGTAMSACSLIKKMLDNDTFETPLNVYNDGGRVQ 121 Query: 257 IEWHDNN----HVFMTGEAKKEWEGKL----DIKTGKWIKKNEDDEAY 296 + + + + G A G + +I T + + Y Sbjct: 122 VTAKKDETGEISLQLIGNATFVSNGSVRYDNEIVTELTNEATSEQAKY 169 >gi|255523491|ref|ZP_05390459.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512748|gb|EET89020.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 74 Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALST-DDNTHFDQIMLIHDFQDASVDAFIRI 66 F K G+GN+ +V++ + ++T AI + + D I+L Q D ++I Sbjct: 6 FVKTHGLGNEYIVLNEEKINFSLTQKAIKRICNVNFGIGSDGILL--KVQSNKADFGLKI 63 Query: 67 INCDGSEVQSC 77 N DGSE + Sbjct: 64 FNPDGSEAEKS 74 >gi|66735101|gb|AAY53793.1| putative diaminopimelate epimerase [Campylobacter jejuni] Length = 182 Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 31/208 (14%) Query: 76 SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 CGNG R F K + +F T G++ AK N+ + ++ Sbjct: 1 MCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQ---------------DKVEVSL 45 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 K ++ F + + + G PH + F ++ L F +L + Sbjct: 46 GKIKSVQNTFE------ELGKTWQLCNTGVPHLVHFCQN------LDEFDTMLCQKMRQK 93 Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253 N++ ++ L +RT+ERGV T ACG+ A + K V + G Sbjct: 94 YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153 Query: 254 GLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + N +F G+ K +E + Sbjct: 154 E-EVGFAYKNEELFFEGKVKYCFEANYN 180 >gi|205356636|ref|ZP_03223398.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345493|gb|EDZ32134.1| putative diaminopimelate epimerase [Campylobacter jejuni subsp. jejuni CG8421] Length = 182 Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 31/208 (14%) Query: 76 SCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 CGNG R F K + +F T GI+ AK N+ + ++ Sbjct: 1 MCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQ---------------DKVEVSL 45 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 K ++ F + + G PH + F ++ L F +L + Sbjct: 46 GKIKSVQNTFE------ELGKTWQLCDTGVPHLVHFCQN------LDEFDTILCQKMRQK 93 Query: 195 EGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNRAVSVKMLGG 253 N++ ++ L +RT+ERGV T ACG+ A + K V + G Sbjct: 94 YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSG 153 Query: 254 GLLIEWH-DNNHVFMTGEAKKEWEGKLD 280 + + N +F G+ K +E + Sbjct: 154 E-KVGFTYKNEELFFEGKVKYCFEANYN 180 >gi|330976603|gb|EGH76647.1| diaminopimelate epimerase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 52 Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 A+ VA+ + + + + GG L IEW H V MTG A + +EG++ + Sbjct: 1 AAAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 52 >gi|218670599|ref|ZP_03520270.1| diaminopimelate epimerase [Rhizobium etli GR56] Length = 138 Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 2/131 (1%) Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDA 62 S+ V+FA+M G+GNKILV+DMRG D +T+ A AL+ D T FDQIM IHD + DA Sbjct: 2 SATVEFARMNGLGNKILVVDMRGRPDKVTAAAAVALNADPETEFDQIMAIHDPKADGTDA 61 Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILV--AKENRDGSISVDM 120 FI I+N DGS+ Q+CG R + K ++ + + DM Sbjct: 62 FIDILNSDGSKAQACGKRHTLRRAGACRRNRPKGLHLPGRSPGILNAVEHEGRDDLPSDM 121 Query: 121 GEPILDWKLIP 131 G+P+ DW P Sbjct: 122 GKPVFDWGQDP 132 >gi|254303513|ref|ZP_04970871.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323705|gb|EDK88955.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 264 Score = 64.0 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 26/280 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I D+ ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIK-------DSHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K G SV + + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------AFSKQKNYSITCSGESSVLDVDVRI 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D V+ L G H IF ++++ Sbjct: 109 DGAQNKFLAKIKMPKFISLEEINVDEYKLGLVRF--SGINHFIFNIKENKETSFENIIDL 166 Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + + S+ + E G G +C S A Sbjct: 167 VKKCLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +R + G L +N+ +++ G + EGK+ IK Sbjct: 227 DR-AKIVQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264 >gi|237738947|ref|ZP_04569428.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31] gi|229423547|gb|EEO38594.1| diaminopimelate epimerase [Fusobacterium sp. 2_1_31] Length = 258 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 24/278 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + L +DN H +Q+ I D ++ Sbjct: 3 LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNHLQ 55 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K T + K G V + Sbjct: 56 MMGGE-----FCGNASRAFASLLAFRDK-------TFSKQKIYKITCSGEDEVLAVDVRE 103 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA-IFFVEDDLYHYDLASFG 184 +++ L +G+ I ++D + + S Sbjct: 104 GQTENSFLAKIKMPKFKSLEELKIDNYKLGLVKFSGIGHFIFDIAKNKEDNFEKVIDSVK 163 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESL-DLRTWERGVGLTAACGSAACASVVASGCLHKTN 243 N L+ + G+ S++ ++ E G+ +C S A + Sbjct: 164 NYLSDKDFSAFGIMFFDRENLSMKPYVYVKEVESGIFE-NSCASGTTALGYYLKKYKNLD 222 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R + G L +N+ +++ G + EGK+ I Sbjct: 223 R-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKVYI 258 >gi|260495528|ref|ZP_05815653.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33] gi|260196870|gb|EEW94392.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_33] Length = 265 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 26/279 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K G SV + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYSITCSGESSVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D ++ L G H IF ++++ Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRF--SGINHFIFNIKENKETSFENIIDL 166 Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + + S+ + E G G +C S A Sbjct: 167 VKKYLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +R + G L +N+ +++ G + EG++ I Sbjct: 227 DR-AKIIQPNGWLE-YIIENDEIYIDGPVEIVAEGEVYI 263 >gi|19705053|ref|NP_602548.1| hypothetical protein FN1732 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19712971|gb|AAL93847.1| Hypothetical protein FN1732 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 265 Score = 63.6 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 86/278 (30%), Gaps = 24/278 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I D+ ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIK-------DSHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 ++ + CGN R I +K + Sbjct: 61 MMGGE-----FCGNASRAFASLLAFRDKDFSKQKNYNITCSGESKVLDVDVRNDGAKNKF 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L +P S ++++ D + +G V + + N F DL + + Sbjct: 116 LAKIKMPKFLSLEEINVDEYKLGLVRFSGINHFIFNIKENKETSFENIIDL----VKKYL 171 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTN 243 + + + + E G G +C S A + Sbjct: 172 SNEEYSAFGIMFFDSDNLSMKP----YVYVKEVGSGVYENSCASGTTALGYYLKKCKNLD 227 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R + G L +N+ +++ G + EGK+ I Sbjct: 228 R-AKIVQPNGWLE-YIIENDEMYIDGPVEIIAEGKIYI 263 >gi|294784032|ref|ZP_06749354.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] gi|294479844|gb|EFG27623.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA] Length = 262 Score = 63.6 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 86/282 (30%), Gaps = 30/282 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + L +DN H +Q+ I D ++ Sbjct: 3 LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIK-------DNHLQ 55 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K + K G + + Sbjct: 56 MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKIYKITCSGEDEILAVDVRE 103 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +++ L G H IF V ++ + Sbjct: 104 GQTENSFLAKIKMPKFKSLEELKIDNYKLGLVKF--SGIDHFIFDVAENKEDNF-EKVID 160 Query: 186 LLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + + + I + ++ E G+ +C S A Sbjct: 161 SVKNYLSDKDFSAFGIMFFDRQNLSMKPYVYVKDIESGIFE-NSCASGTTALGYYLKKYK 219 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +R + G L +N+ +++ G + EGK+ I+ Sbjct: 220 NLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGKVYIQ 259 >gi|262066039|ref|ZP_06025651.1| putative diaminopimelate epimerase [Fusobacterium periodonticum ATCC 33693] gi|291380290|gb|EFE87808.1| putative diaminopimelate epimerase [Fusobacterium periodonticum ATCC 33693] Length = 261 Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 84/284 (29%), Gaps = 30/284 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + L +DN H +Q+ I + Sbjct: 3 LDFIKINPAGNITILIDNFNIYDKDIAKISEELMREDNLHAEQVGFIKN----------N 52 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + G E CGN R L R K T + K G V + Sbjct: 53 HLQMMGGE--FCGNASRAFASLLAFRDK-------TFSKQKIYKITCSGEDEVLNVDIRE 103 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 ++ L G H IF + ++ + Sbjct: 104 GQTENSFLAKIKMPKFKSLEEIKIDSYKLGLVKF--SGIDHFIFDIAENKEDNF-EKIID 160 Query: 186 LLAKHPMFSEGVNLSIARVTSLE-----SLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + + + I + ++ E G+ +C S A Sbjct: 161 SVKNYLSDKDFSAFGIMFFDKENLFMKPYVYVKEVESGIFE-NSCASGTTALGYYLKKYK 219 Query: 241 KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 +R + G L +N+ +++ G + EG + +K G Sbjct: 220 NLDR-AKIIQPNGWLE-YIIENDEIYIDGSVEIVAEGSVYVKRG 261 >gi|296329315|ref|ZP_06871816.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153671|gb|EFG94488.1| diaminopimelate epimerase DapF [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 263 Score = 62.9 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 86/277 (31%), Gaps = 22/277 (7%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I + + Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKLSEEIMKETNLYAEQVGFIKE----------K 57 Query: 66 IINCDGSEVQSCGNGMRCVVR-FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 + G E CGN R +I ++ + Sbjct: 58 HLQMMGGE--FCGNASRSFASLLAFRDKDFSEQKNYSITCSGESEVLDVDVRTDGAKNKF 115 Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 L +P S +++ D + +G V + + N F DL L++ Sbjct: 116 LAKIKMPKFISLEEISIDEYKLGLVRFSGISHFIFNIKENKETSFENIIDLVKKYLSNED 175 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR 244 F + + ++ E G+ +C S A +R Sbjct: 176 YSAFGIMFFDKDNLSM------KPYVYVKELESGI-YENSCASGTTALGYYLKKYKNLDR 228 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V G L +N+ +++ G + EGK+ I Sbjct: 229 -AKVVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263 >gi|237743006|ref|ZP_04573487.1| diaminopimelate epimerase [Fusobacterium sp. 7_1] gi|229433566|gb|EEO43778.1| diaminopimelate epimerase [Fusobacterium sp. 7_1] Length = 264 Score = 62.1 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 26/280 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K G SV + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYSITCSGESSVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D ++ L G H IF ++++ Sbjct: 109 DEAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRF--SGINHFIFNIKENKETNFENIIDL 166 Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + + S+ + E G G +C S A Sbjct: 167 VKKYLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 +R + G L +N+ +++ G + EGK+ IK Sbjct: 227 DR-AKIIQPNGWLE-YIIENDEIYIDGPVEIIAEGKVYIK 264 >gi|1149634|emb|CAA60229.1| dapF [Clostridium perfringens] Length = 61 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAV 246 K+ +F +G N++ +V +++R WERG G T ACG+ CASV+A+ L ++ V Sbjct: 2 YRKYDLFPQGTNVNSCKVIDRNPMEVRPWERGAGPTLACGTGNCASVIAANNLGLVDKEV 61 >gi|256028327|ref|ZP_05442161.1| hypothetical protein PrD11_10087 [Fusobacterium sp. D11] gi|289766253|ref|ZP_06525631.1| diaminopimelate epimerase [Fusobacterium sp. D11] gi|289717808|gb|EFD81820.1| diaminopimelate epimerase [Fusobacterium sp. D11] Length = 265 Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 26/279 (9%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFVKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIK-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K G SV + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSEQKNYSITCSGESSVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + ++ L G H IF ++++ Sbjct: 109 NGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRF--SGINHFIFNIKENKETNFENIIDL 166 Query: 186 LLAKHPMFSEGVNLSIARVTSLESL--DLRTWERGVG-LTAACGSAACASVVASGCLHKT 242 + + S+ + E G G +C S A Sbjct: 167 VKKYLSNEDYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNL 226 Query: 243 NRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 +R + G L +N+ +++ G + EGK+ I Sbjct: 227 DR-AKIVQPNGWLE-YIIENDEMYIDGPVEIVAEGKVYI 263 >gi|256829396|ref|YP_003158124.1| hypothetical protein Dbac_1615 [Desulfomicrobium baculatum DSM 4028] gi|256578572|gb|ACU89708.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM 4028] Length = 271 Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 81/289 (28%), Gaps = 32/289 (11%) Query: 1 MQSSMVDFAKMEGIGN-KILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59 M++ + F K GN IL++D + L ++ +Q+ + D Sbjct: 1 MRT--LRFYKASPGGNATILILDAV--PPGQRAQLARLLMDANHLQAEQVGFLDLGADP- 55 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 + ++ + CGN R + + E +RG L Sbjct: 56 --VRLDMMGGE-----FCGNACRAAAAVMAREGVGLARIGEELRGELRVSGVDRPVALRV 108 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY--- 176 + W +PL S D D +R P + + + +D Sbjct: 109 AADGYECWVEMPLPVSSDVGRHDWISELEPGLGLVRLPGITHLCLDEELHPFAEDFESAC 168 Query: 177 -----HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA 231 + L + + V S +E G CGS + A Sbjct: 169 AALRAKFGLDEEAVGCLWYRTSPTCAIKPVVWVRS---TASTHYETG------CGSGSLA 219 Query: 232 SVVASGCLHKTNRAVSVKMLGG-GLLIEWHDNNH-VFMTGEAKKEWEGK 278 + G + V G + + + V++ G G+ Sbjct: 220 LALWLGRGKNLPTDLRVLQPSGSEIGVRADGDGPGVWIFGPVTLVARGE 268 >gi|242372515|ref|ZP_04818089.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1] gi|242349732|gb|EES41333.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 59.0 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 31/293 (10%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M +++F+K GN +++ + + + A ++T + +Q+ I + Sbjct: 1 MHRQVIEFSKYNPSGNMTILVHSKHHPNEYATIANQLMAT-THVCCEQVGFIESTNHNN- 58 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR----MKRKSFTFETIRGILVAKENRDGSI 116 + S + CGN + +L + ++ K + Sbjct: 59 ---WETYHLVMSGNEFCGNATMSYIHYLQEHQLLQHSQCQLKVSGYSQLVPCKVHNHRCY 115 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG--NPHAIFFVEDD 174 V M + + + + ++ + VS + + Sbjct: 116 EVGMPQVQQITPRQLVIAGQLYHVLELTYESYIHFVVPTQDISVSFKKQVEQFVRTQRWN 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + + + + + + WE +CGS A + V Sbjct: 176 VNYKTIGVMLFDTQQQFLQPLIYIPEVQSLI---------WE------NSCGSGAASIGV 220 Query: 235 A-SGCLHKTNRAVSVKMLGGGLLIEWHDNNHV-FMT---GEAKKEWEGKLDIK 282 ++ + V GG +L+ N + ++T G+ G+ I+ Sbjct: 221 FQQYRTNQASNDFKVNQPGGSILVSSTFNEQMGYLTSIKGQVSTVATGQAYIE 273 >gi|157497162|gb|ABV58325.1| diaminopimelate epimerase [Wolbachia endosymbiont of Dirofilaria immitis] Length = 106 Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 45 HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE-TIR 103 DQ+++I ++ D F+ I N DGS+V+ CGN RCV + T E Sbjct: 15 GCDQVIVI--TDSSTADCFMHIYNADGSKVEMCGNAARCVGYLTMLEKDTEYATIELVNN 72 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137 IL + D I V+MG+P+L W IPL+ + Sbjct: 73 RILECFKVSDKFIKVNMGKPLLKWHEIPLSIECN 106 >gi|256846137|ref|ZP_05551595.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2] gi|256719696|gb|EEU33251.1| diaminopimelate epimerase [Fusobacterium sp. 3_1_36A2] Length = 265 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 77/275 (28%), Gaps = 22/275 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K G V + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSEQKNYSITCSGENEVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D ++ L + + +L ++ Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRFSGINHFIFNIKENKELSFENIIDLVK 168 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 + +S + R + E G G +C S A +R Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + G L +NN +++ G + EGK+ Sbjct: 229 -AKIIQPNGWLE-YIIENNEIYIDGPVEIIAEGKV 261 >gi|319400468|gb|EFV88702.1| diaminopimelate epimerase [Staphylococcus epidermidis FRI909] Length = 279 Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 24/289 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + +++ + CGN + +L R+ + F+ + Sbjct: 60 DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECK--VHSQH 113 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 E + K+ + F K+ +F +++ + ++ G A+ +D Sbjct: 114 YEVTM-PKVHQVKERFVKLGDQQFKAFEISYDTYIHYVLMCDGVDLAMKQRVEDFVSAQT 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +F + I + + +D WE +CGS A + V Sbjct: 173 WHQQFKTIGVMLFQQDKQF-IYPLIHIPKIDSLIWE------NSCGSGAASIGVLVNY-- 223 Query: 241 KTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + V GG +++ + + G+ G+ I+ Sbjct: 224 LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|329732780|gb|EGG69128.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU028] Length = 279 Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 93/291 (31%), Gaps = 28/291 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119 D + +++ + CGN + +L R+ + F+ G E + S + Sbjct: 60 DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + + ++ + ++ V + + Sbjct: 116 VTMPKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQCVE------DFVS 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ + + + ++D WE +CGS A + V Sbjct: 170 AQTWHRQFKTIGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY 223 Query: 239 LHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + V GG +++ + + G+ G+ I+ Sbjct: 224 --LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|315647127|ref|ZP_07900240.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453] gi|315277329|gb|EFU40658.1| hypothetical protein PVOR_17339 [Paenibacillus vortex V453] Length = 293 Score = 56.3 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 43/291 (14%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTD----DNTHFDQIMLIHDFQDASVD 61 +DF K N ++I + D ++ DN + +Q+ I F+ + D Sbjct: 5 IDFVKCNPTQNMTVLI-----KSKLPPDDYKVIAAKIMSYDNVYAEQVGFIEPFRKENAD 59 Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDM 120 A + + + CGN + +L + T E + + I+ + Sbjct: 60 ARLHMAGGE-----FCGNACMALAAYLANEQGLNQNETTELHLQVSGVERLVTCRITKNS 114 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 G+ +PL + ++ + + + VV + +D+ Sbjct: 115 GDYQCQV-DMPLPLTIEQTVLN-------DGSDSYDMIVVRYSDFVHFVIEVEDIDTEMK 166 Query: 181 ASFGNLLAKH----------PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 NL+ + +A + + LD WERG CGS Sbjct: 167 RKMLNLVKLIGPLLDTKMLGILLYNIRTSELAPLIYVSDLDSAVWERG------CGSGTA 220 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEG 277 + ++ + +++ GG + + + + + G +G Sbjct: 221 SVGAYLAWKNQKSMEAAIQQPGGTIQVRAFYDQERLTQLEIEGNVGIVAQG 271 >gi|329732095|gb|EGG68449.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU144] Length = 279 Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 91/291 (31%), Gaps = 28/291 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119 D + +++ + CGN + +L R+ + F+ G E + S + Sbjct: 60 DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + + + V M + + + Sbjct: 116 VTMPKVH------QVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQRVEDFVS 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ + + + ++D WE +CGS A + V Sbjct: 170 AQTWHRQFKTIGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY 223 Query: 239 LHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + V GG +L+ + + G+ G+ I+ Sbjct: 224 --LTDHDIQDYLVNQPGGSILVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|293367479|ref|ZP_06614137.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318425|gb|EFE58813.1| diaminopimelate epimerase [Staphylococcus epidermidis M23864:W2(grey)] Length = 279 Score = 55.9 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 90/290 (31%), Gaps = 26/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119 D + +++ + CGN + +L R+ + F+ G E + S + Sbjct: 60 DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + + ++ + ++ V + + + Sbjct: 116 VTMPKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQCVEDFVSAQTWHR 175 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCL 239 ++ P L WE +CGS A + V Sbjct: 176 QFKTIGVMLFQPDKQFIYPLIHIPAIDS-----LIWE------NSCGSGAASIGVLVNY- 223 Query: 240 HKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + V GG +++ + + G+ G+ I+ Sbjct: 224 -LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|294784733|ref|ZP_06750021.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] gi|294486447|gb|EFG33809.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27] Length = 265 Score = 55.5 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 78/275 (28%), Gaps = 22/275 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID +D + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYDKNIPKISEEIMKETNLYAEQVGFI-------GDNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K K G SV + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYKITCSGESSVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D ++ L + + ++ ++ + Sbjct: 109 DGAKNKFLAKIKMPKFISLEKIKIDGYKLGLVRFSGISHFIFNIKENKEVSFENIINLVK 168 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 + +S + R + E G G +C S A +R Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + G L N+ + + G + EGK+ Sbjct: 229 -AKIIQPNGWLE-YIIKNDEMCIDGPVEIIAEGKV 261 >gi|27467119|ref|NP_763756.1| diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228] gi|27314661|gb|AAO03798.1|AE016744_201 diaminopimelate epimerase [Staphylococcus epidermidis ATCC 12228] Length = 279 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 98/289 (33%), Gaps = 24/289 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THVCCEQVGFIESVNYENG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D + +++ + CGN + +L R+ + F+ + Sbjct: 60 DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECK--VHSQH 113 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 E + K+ + F K+ +F +++ + ++ AI +D Sbjct: 114 YEVTM-PKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQRVEDFVSAQT 172 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 +F + I + + ++D WE +CGS A + V Sbjct: 173 WHRQFKTIGIMLFQQNKQF-IYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY-- 223 Query: 241 KTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + V GG +++ + + G+ G+ I+ Sbjct: 224 LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|237742813|ref|ZP_04573294.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13] gi|229430461|gb|EEO40673.1| diaminopimelate epimerase [Fusobacterium sp. 4_1_13] Length = 265 Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 22/275 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K++ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFIKIDPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K K G SV + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSKQKNYKITCSGESSVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D ++ L + + ++ ++ Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRFSGINHFIFNIKENKEVSFENIIDLVK 168 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 + +S + R + E G G +C S A +R Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + G L +N+ + + G + EGK+ Sbjct: 229 -AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261 >gi|312960043|ref|ZP_07774556.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] gi|311285700|gb|EFQ64268.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6] Length = 339 Score = 54.8 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 107/331 (32%), Gaps = 67/331 (20%) Query: 3 SSMVDFAKMEGIGNKILVIDM---RGCHDNITSDAINALSTDDNT--------------- 44 + M F + GN V++ R ++ A +A T Sbjct: 10 TPMTLF--YDARGNIYAVVNPAALRHQGIDVPDSAASAARTRKAWAASAIAAECEWGETP 67 Query: 45 --------HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MK 93 D +++ A + I+N DGS + GNG+ + LT + Sbjct: 68 HPAEGKAHRCDGLLV--GPFQAQPPFDLLIVNTDGSLAERSGNGLTIFAQALTDQGLMTD 125 Query: 94 RKSFTFETIRGILV---------AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144 + V A + + +G P + A+ D++ D Sbjct: 126 GCELRVHHDQPDGVSPVATWVEPAVFEQVAGFWLALGPPAFGPSAVG-AKDVDQVLLDTT 184 Query: 145 HIGPVNHLFLRNPF-----VVSMGNPHAIFFVED-----DLYHYDLASFGNLLAKHPMFS 194 + V+ L +P V +GNPH + VE D ++ L Sbjct: 185 ELSHVSALAAIDPHWAHSQFVRVGNPHCVTLVEQASALPDNSQMQRSALFEALQAIAFAP 244 Query: 195 E---------GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR- 244 G+NL A + R +ERG G TA+ G++A A A+ Sbjct: 245 PAGSGQPCVAGINLQWAAQQPGNRVVARVFERGEGPTASSGTSASAVACAAWRAGWVEAG 304 Query: 245 AVSVKMLGG--GLLIEWHDNN--HVFMTGEA 271 V+V M GG + + D+ V + G A Sbjct: 305 EVAVVMPGGIAPVRLHVQDDTLLSVSLFGTA 335 >gi|46203851|ref|ZP_00050893.2| COG0253: Diaminopimelate epimerase [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 6/93 (6%) Query: 50 MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR------FLTSRMKRKSFTFETIR 103 M++HD DAF+RI N DGSE +CGNG RCV + + + T ET Sbjct: 1 MVVHDPVSPGTDAFMRIYNTDGSESGACGNGTRCVGYALLDDPAMARPSENGTLTLETKA 60 Query: 104 GILVAKENRDGSISVDMGEPILDWKLIPLARSF 136 G++ K D S +VDMG+P L W IPLA Sbjct: 61 GLVAVKRITDRSFTVDMGQPRLRWDEIPLAEPL 93 >gi|57865749|ref|YP_189923.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis RP62A] gi|251811536|ref|ZP_04826009.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis BCM-HMP0060] gi|282876692|ref|ZP_06285548.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis SK135] gi|57636407|gb|AAW53195.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis RP62A] gi|251804914|gb|EES57571.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis BCM-HMP0060] gi|281294343|gb|EFA86881.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis SK135] gi|329735791|gb|EGG72071.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU045] Length = 279 Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 93/291 (31%), Gaps = 28/291 (9%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 MQ +V+F+K GN +++ + + A ++T + +Q+ I + Sbjct: 1 MQRQVVEFSKYNPSGNMTILVHSKHQPSEYAAIAHQLMAT-THMCCEQVGFIESVNYENG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISVD 119 D + +++ + CGN + +L R+ + F+ G E + S + Sbjct: 60 DNYHLVMSGNE----FCGNATMSYIHYLKERLLIQHQQFQLRVSGCSHPVECKVHSQHYE 115 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + P + + ++ + ++ V + + Sbjct: 116 VTMPKVHQVKERFVKLGEQQFKAFEISYDTYIHYVMMCDDVDLAIKQCVE------DFVS 169 Query: 180 LASFGNLLAKHPMFSEGVNLSIARV-TSLESLDLRTWERGVGLTAACGSAACASVVASGC 238 ++ + + + ++D WE +CGS A + V Sbjct: 170 AQTWHRQFKTIGVMLFQQDKQFIYPLIHIPAIDSLIWE------NSCGSGAASIGVLVNY 223 Query: 239 LHKTNRAVS---VKMLGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDIK 282 T+ + V GG +++ + + G+ G+ I+ Sbjct: 224 --LTDHDIQDYLVNQPGGSIIVSSRKSGQNEYQTTIKGQVSTVATGQAYIE 272 >gi|270646071|ref|ZP_06222183.1| diaminopimelate epimerase [Haemophilus influenzae HK1212] gi|270317241|gb|EFA28820.1| diaminopimelate epimerase [Haemophilus influenzae HK1212] Length = 45 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNH-VFMTGEAKKEWEGKLDI 281 N V V +LGG L+IEW+ H ++MTGEA ++G + + Sbjct: 2 QGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 45 >gi|314934890|ref|ZP_07842249.1| diaminopimelate epimerase family protein [Staphylococcus caprae C87] gi|313652820|gb|EFS16583.1| diaminopimelate epimerase family protein [Staphylococcus caprae C87] Length = 280 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 35/290 (12%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M +V+F+K GN +++ + + S A ++T + +Q+ I + Sbjct: 1 MHRQIVEFSKYNPSGNMTILVHSKHHPEEYASIANQLMAT-THVCCEQVGFIESSDYTNG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFE------TIRGILVAKENRDG 114 D F +++ + CGN + +L +S F+ + + Sbjct: 60 DQFHLVMSGNE----FCGNATMSYIHYLQEHQLLESEQFQLKISGCSQTVSCTVHNQQYY 115 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + + + I+ +LI + +D ++ + + Sbjct: 116 EVGMPQVQSIVPRQLIIAGQPYDALELIYETYIHYVIQTQETTMNFKYQVEQFVREQQWH 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + +H + + + WE +CGS A + V Sbjct: 176 TTFKTIGIMLFDSRQHFLMPLIYIPEVQSLI---------WE------KSCGSGAASIGV 220 Query: 235 ASGCLHKTNRAV---SVKMLGGGLLIE---WHDNNHVF-MTGEAKKEWEG 277 ++TN+ VK GG +++ + ++ + G+ G Sbjct: 221 --LQQYQTNQPCKDFKVKQPGGSIVVSSTYSNKKGYITSIKGQVSTVATG 268 >gi|282917824|ref|ZP_06325574.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp. aureus D139] gi|283767554|ref|ZP_06340469.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19] gi|282318109|gb|EFB48469.1| hypothetical protein SATG_00726 [Staphylococcus aureus subsp. aureus D139] gi|283461433|gb|EFC08517.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus H19] Length = 273 Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 23/289 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + + S + CGN + L K F+ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCA 108 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + +P A + + + +V + + + L Sbjct: 109 IHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHL---- 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASG 237 + ++ + + + + E + + +CGS A V + Sbjct: 165 VETYVREQQWNHKYKTVGMMLFNEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNY 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 225 QRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|229589602|ref|YP_002871721.1| putative epimerase [Pseudomonas fluorescens SBW25] gi|229361468|emb|CAY48344.1| putative epimerase [Pseudomonas fluorescens SBW25] Length = 346 Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 75/254 (29%), Gaps = 33/254 (12%) Query: 46 FDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR-----------FLTSRMKR 94 D +++ A + I+N DGS + GNG+ + Sbjct: 84 CDGLLV--GPFQAEPPFDLLIVNTDGSLAERSGNGLTIFAQALTEQALMTDACELRVHHD 141 Query: 95 KSFTFETIRGILVAKE-NRDGSISVDMGEPILDWKLIPLAR----SFDKMDRDRFHIGPV 149 K+ + + +++G P + + + Sbjct: 142 KTDAVSPVATRVEPSVREDVAGFWLELGLPTFGPSAVGAQGVDQAFLEGAELSHISELTA 201 Query: 150 NHLFLRNPFVVSMGNPHAI--------------FFVEDDLYHYDLASFGNLLAKHPMFSE 195 + V +GNPH + +F + Sbjct: 202 INPQWATSQFVRVGNPHCVTLVERVSALPDNAQMQQPALFEALKAIAFAPPAGGGQPCAA 261 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AVSVKMLGGG 254 GVNL A S L R +ERG G TA+ G++A A A+ ++V M GG Sbjct: 262 GVNLQWAARESRNRLIARVFERGEGPTASSGTSASAVACAAWRAGWVESGDIAVVMPGGI 321 Query: 255 LLIEWHDNNHVFMT 268 + H + ++ Sbjct: 322 APVRLHTQDKTLLS 335 >gi|261406672|ref|YP_003242913.1| hypothetical protein GYMC10_2835 [Paenibacillus sp. Y412MC10] gi|261283135|gb|ACX65106.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10] Length = 293 Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 81/279 (29%), Gaps = 19/279 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K N ++I + + + DN + +Q+ I DAF+R Sbjct: 5 IDFVKCNPTQNMTILI-NTKLPPDEHKRVAAKIMSYDNVYAEQVGFIEQSMKDDADAFLR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + + CGN + +L K R + E E Sbjct: 64 MAGGE-----FCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKEDYR 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +PL D+ + FV + + G Sbjct: 119 CRVNMPLPVRIDQTILQDGCSLVDAVVVRYKDFVHFVIEVERFDAQMNSSMLAMAKHIGP 178 Query: 186 LLAKHPMFSEGVNLSIARV---TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 L + N I + + L+ WERG CGS + HK Sbjct: 179 FLDARMVGILLYNSRIRELTPLIYVPELNSAVWERG------CGSGTASVGAYLAWKHKR 232 Query: 243 NRAVSVKMLGGGLLIE--WHDN--NHVFMTGEAKKEWEG 277 S+K GG + ++ + N H+ + G +G Sbjct: 233 GVEASIKQPGGTIHVKALFDQNRLTHLEIEGSVGIAAQG 271 >gi|302061755|ref|ZP_07253296.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato K40] Length = 40 Score = 53.6 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 17/38 (44%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD 42 ++ F KM G+GN +V+D+ H +I Sbjct: 2 LLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRH 39 >gi|49484684|ref|YP_041908.1| hypothetical protein SAR2557 [Staphylococcus aureus subsp. aureus MRSA252] gi|257423952|ref|ZP_05600381.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426635|ref|ZP_05603037.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429270|ref|ZP_05605657.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257431916|ref|ZP_05608279.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257434877|ref|ZP_05610928.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282902383|ref|ZP_06310276.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus C160] gi|282906811|ref|ZP_06314659.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909787|ref|ZP_06317596.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912035|ref|ZP_06319831.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WBG10049] gi|282915330|ref|ZP_06323107.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M899] gi|282921053|ref|ZP_06328771.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp. aureus C427] gi|282925959|ref|ZP_06333607.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp. aureus C101] gi|283959250|ref|ZP_06376691.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293497725|ref|ZP_06665579.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp. aureus 58-424] gi|293511305|ref|ZP_06670001.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus M809] gi|293549913|ref|ZP_06672585.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M1015] gi|295429057|ref|ZP_06821679.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589451|ref|ZP_06948092.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8] gi|49242813|emb|CAG41538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272970|gb|EEV05072.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276266|gb|EEV07717.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279751|gb|EEV10338.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282795|gb|EEV12927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285473|gb|EEV15589.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282312788|gb|EFB43192.1| hypothetical protein SARG_01286 [Staphylococcus aureus subsp. aureus C101] gi|282315468|gb|EFB45852.1| hypothetical protein SASG_01234 [Staphylococcus aureus subsp. aureus C427] gi|282321051|gb|EFB51385.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M899] gi|282323731|gb|EFB54047.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WBG10049] gi|282326361|gb|EFB56665.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329710|gb|EFB59231.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596842|gb|EFC01801.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus C160] gi|283788842|gb|EFC27669.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290918960|gb|EFD96036.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus M1015] gi|291096656|gb|EFE26914.1| hypothetical protein SCAG_00298 [Staphylococcus aureus subsp. aureus 58-424] gi|291465931|gb|EFF08461.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus M809] gi|295126816|gb|EFG56460.1| hypothetical protein SIAG_01259 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577962|gb|EFH96675.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus MN8] gi|312437110|gb|ADQ76181.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH60] gi|315194971|gb|EFU25359.1| hypothetical protein CGSSa00_02877 [Staphylococcus aureus subsp. aureus CGS00] Length = 273 Score = 53.6 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 81/290 (27%), Gaps = 25/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118 D + + S + CGN + L K F+ G + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +++P + I ++ P Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVSQVTTEIQH----------- 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236 + ++ + + + + E + + +CGS A V + Sbjct: 164 LVETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|258424990|ref|ZP_05687861.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257844824|gb|EEV68867.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 273 Score = 53.2 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 23/289 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + + S + CGN + L K F+ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCA 108 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + +P A + + + +V + + + L Sbjct: 109 IHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHL---- 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASG 237 + ++ + + + + E + + +CGS A V + Sbjct: 165 VETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNY 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 225 QRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|283471689|emb|CAQ50900.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ST398] Length = 273 Score = 53.2 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 81/290 (27%), Gaps = 25/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118 D + + S + CGN + L K F+ G + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +++P + I ++ P Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236 + ++ + + + + E + + +CGS A V + Sbjct: 164 LVETYVRKQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|298695738|gb|ADI98960.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] Length = 273 Score = 53.2 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 84/289 (29%), Gaps = 23/289 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 D + + S + CGN + L K F+ + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCA 108 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + +P A + + + +V + + + L Sbjct: 109 IHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTIEIQHL---- 164 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASG 237 + ++ + + + + E + + +CGS A V + Sbjct: 165 VETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNY 224 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 225 QRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|28211908|ref|NP_782852.1| hypothetical protein CTC02312 [Clostridium tetani E88] gi|28204351|gb|AAO36789.1| conserved protein [Clostridium tetani E88] Length = 266 Score = 52.9 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 70/263 (26%), Gaps = 19/263 (7%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVR 86 + D L N H +Q+ + + + ++ + CGN R + Sbjct: 13 PKELYKDISKKLMQYTNIHGEQVGFLTSSNEEEKIIKLNMMGGE-----FCGNASRSLGA 67 Query: 87 FLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI 146 L + + K G V E D + + Sbjct: 68 LLLYN---NYPYIKNKEELYEVKLQCSGYEDVLNCEVTPTEVSNLFYSKIDMPIPSKIKL 124 Query: 147 GPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTS 206 + + G H + + + + + + + Sbjct: 125 EKLEDYEIYKVDF--SGIFHFVVDINKVENNEKFFNLVKNTMEERYPEYDAFGIMFYNFN 182 Query: 207 LESLDLRTWERGVG---LTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL-----IE 258 L + + +C S A V A +K N + ++ GG L +E Sbjct: 183 KNYLKPLVYVKATDSLFWEESCASGTSAVVSALAYENKENICIGIRQPGGELEATANYVE 242 Query: 259 WHDNNHVFMTGEAKKEWEGKLDI 281 + + + G + EG +++ Sbjct: 243 SKID-KITIKGTVEIVAEGIVNV 264 >gi|329928299|ref|ZP_08282187.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5] gi|328937933|gb|EGG34336.1| hypothetical protein HMPREF9412_5642 [Paenibacillus sp. HGF5] Length = 293 Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 73/256 (28%), Gaps = 15/256 (5%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K N ++I + + + DN + +Q+ I DAF+R Sbjct: 5 IDFVKCNPTQNMTILI-NTKLPPDEHKRVAAKIMSYDNVYAEQVGFIEQSMKDDADAFLR 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + + CGN + +L K R + E E Sbjct: 64 MAGGE-----FCGNACMALAAYLAEVQGIKRHLTTEFRLEVSGAERLVSCHITKNKEDYR 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 +PL D+ + FV + + G Sbjct: 119 CRVNMPLPVRIDQTVLQDGCSLVDAVVVRYKDFVHFVIEVERFDAQMNSSMLAMAKHIGP 178 Query: 186 LLAKHPMFSEGVNLSIARV---TSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 L + N I + + L+ WERG CGS + HK Sbjct: 179 FLDARMVGILLYNSRIRELTPLIYVPELNSAVWERG------CGSGTASVGAYLAWKHKR 232 Query: 243 NRAVSVKMLGGGLLIE 258 S+K GG + ++ Sbjct: 233 GVEASIKQPGGTIHVK 248 >gi|261886398|ref|ZP_06010437.1| diaminopimelate epimerase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 179 Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%) Query: 129 LIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLASFGN 185 +I + D ++ ++ F+ F G PH + FV++ L+ F Sbjct: 30 IIKASIDNDFVEVALXAPKXLSEPFIEYGFEWSFYDTGVPHLVTFVDN------LSKFDL 83 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVVASGCLHKTNR 244 + N++ A + L++RT+ERGV T ACG+ AS K N Sbjct: 84 SVCSELRKKYNANVNFAHLKDNGVLEVRTFERGVENETNACGTGMAASFYTGVDRFKFNP 143 Query: 245 AVSVKMLGG-GLLIEWHDNNHVFMTGEAKKEWEGKL 279 + V L +++ D ++ G+ K ++ + Sbjct: 144 CLKVNPKSKEDLWLKF-DGETIYFKGKVKHCFDTSI 178 >gi|15925460|ref|NP_372994.1| hypothetical protein SAV2470 [Staphylococcus aureus subsp. aureus Mu50] gi|15928049|ref|NP_375582.1| hypothetical protein SA2258 [Staphylococcus aureus subsp. aureus N315] gi|148268907|ref|YP_001247850.1| hypothetical protein SaurJH9_2497 [Staphylococcus aureus subsp. aureus JH9] gi|150394982|ref|YP_001317657.1| hypothetical protein SaurJH1_2546 [Staphylococcus aureus subsp. aureus JH1] gi|156980785|ref|YP_001443044.1| hypothetical protein SAHV_2454 [Staphylococcus aureus subsp. aureus Mu3] gi|253315492|ref|ZP_04838705.1| hypothetical protein SauraC_04967 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007244|ref|ZP_05145845.2| hypothetical protein SauraM_12265 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794809|ref|ZP_05643788.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258407489|ref|ZP_05680632.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258422182|ref|ZP_05685094.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258439575|ref|ZP_05690321.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258442868|ref|ZP_05691428.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258446431|ref|ZP_05694586.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258450452|ref|ZP_05698544.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258455171|ref|ZP_05703131.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269204103|ref|YP_003283372.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus ED98] gi|282893922|ref|ZP_06302154.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117] gi|282926961|ref|ZP_06334586.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295405165|ref|ZP_06814978.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819] gi|296276871|ref|ZP_06859378.1| hypothetical protein SauraMR_11009 [Staphylococcus aureus subsp. aureus MR1] gi|297244220|ref|ZP_06928110.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|13702420|dbj|BAB43561.1| SA2258 [Staphylococcus aureus subsp. aureus N315] gi|14248244|dbj|BAB58632.1| similar to diaminopimelate epimerase [Staphylococcus aureus subsp. aureus Mu50] gi|147741976|gb|ABQ50274.1| Diaminopimelate epimerase-like protein [Staphylococcus aureus subsp. aureus JH9] gi|149947434|gb|ABR53370.1| diaminopimelate epimerase-like protein [Staphylococcus aureus subsp. aureus JH1] gi|156722920|dbj|BAF79337.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788781|gb|EEV27121.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257841001|gb|EEV65452.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257841613|gb|EEV66050.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257847351|gb|EEV71353.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851989|gb|EEV75923.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854499|gb|EEV77447.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257856544|gb|EEV79453.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257862382|gb|EEV85150.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262076393|gb|ACY12366.1| hypothetical protein SAAV_2536 [Staphylococcus aureus subsp. aureus ED98] gi|282591008|gb|EFB96082.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763980|gb|EFC04108.1| hypothetical protein SGAG_01274 [Staphylococcus aureus A8117] gi|285818131|gb|ADC38618.1| Diaminopimelate epimerase [Staphylococcus aureus 04-02981] gi|294970110|gb|EFG46128.1| hypothetical protein SMAG_00312 [Staphylococcus aureus A8819] gi|297178998|gb|EFH38243.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|312830814|emb|CBX35656.1| diaminopimelate epimerase-like protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130888|gb|EFT86873.1| hypothetical protein CGSSa03_12295 [Staphylococcus aureus subsp. aureus CGS03] gi|329723367|gb|EGG59896.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus 21172] Length = 273 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 25/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118 D + + S + CGN + L K F+ G + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +++P + I ++ P Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKALEIIYETYVHYVIPVKQVTTEIQH----------- 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236 + +F + + + E + + +CGS A V + Sbjct: 164 LVEAFVREQQWSHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|253730147|ref|ZP_04864312.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726124|gb|EES94853.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 273 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 81/290 (27%), Gaps = 25/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNGQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118 D + + S + CGN + L K F+ G + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +++P + I ++ P Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236 + +F + + + + E + + +CGS A V + Sbjct: 164 LVEAFVRKQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|21284123|ref|NP_647211.1| hypothetical protein MW2394 [Staphylococcus aureus subsp. aureus MW2] gi|49487253|ref|YP_044474.1| hypothetical protein SAS2361 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650980|ref|YP_187276.1| hypothetical protein SACOL2479 [Staphylococcus aureus subsp. aureus COL] gi|82752066|ref|YP_417807.1| hypothetical protein SAB2353c [Staphylococcus aureus RF122] gi|87160489|ref|YP_495049.1| hypothetical protein SAUSA300_2414 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196406|ref|YP_501229.1| hypothetical protein SAOUHSC_02770 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222579|ref|YP_001333401.1| hypothetical protein NWMN_2367 [Staphylococcus aureus subsp. aureus str. Newman] gi|161510671|ref|YP_001576330.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140401|ref|ZP_03564894.1| hypothetical protein SauraJ_02051 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734105|ref|ZP_04868270.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH130] gi|258451224|ref|ZP_05699257.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262049914|ref|ZP_06022775.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30] gi|262052652|ref|ZP_06024845.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3] gi|282920460|ref|ZP_06328183.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|284025490|ref|ZP_06379888.1| hypothetical protein Saura13_12922 [Staphylococcus aureus subsp. aureus 132] gi|294849020|ref|ZP_06789765.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754] gi|297209707|ref|ZP_06926103.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910720|ref|ZP_07128170.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH70] gi|304379670|ref|ZP_07362403.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21205566|dbj|BAB96259.1| MW2394 [Staphylococcus aureus subsp. aureus MW2] gi|49245696|emb|CAG44175.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285166|gb|AAW37260.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|82657597|emb|CAI82042.1| conserved hypothetical protein [Staphylococcus aureus RF122] gi|87126463|gb|ABD20977.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203964|gb|ABD31774.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375379|dbj|BAF68639.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160369480|gb|ABX30451.1| hypothetical protein USA300HOU_2461 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727800|gb|EES96529.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH130] gi|257861016|gb|EEV83831.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259159460|gb|EEW44511.1| hypothetical protein SA930_0769 [Staphylococcus aureus 930918-3] gi|259161990|gb|EEW46571.1| hypothetical protein SAD30_0605 [Staphylococcus aureus D30] gi|269942051|emb|CBI50463.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282594406|gb|EFB99392.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294824399|gb|EFG40823.1| hypothetical protein SKAG_01095 [Staphylococcus aureus A9754] gi|296885380|gb|EFH24317.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887700|gb|EFK82895.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus TCH70] gi|304341846|gb|EFM07752.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196317|gb|EFU26670.1| hypothetical protein CGSSa01_01196 [Staphylococcus aureus subsp. aureus CGS01] gi|320139179|gb|EFW31061.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142566|gb|EFW34374.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329726727|gb|EGG63188.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus 21189] gi|329730442|gb|EGG66832.1| diaminopimelate epimerase family protein [Staphylococcus aureus subsp. aureus 21193] Length = 273 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 25/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118 D + + S + CGN + L K F+ G + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +++P + I ++ P Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236 + +F + + + E + + +CGS A V + Sbjct: 164 LVEAFVREQQWSHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|329315155|gb|AEB89568.1| hypothetical protein SAT0131_02669 [Staphylococcus aureus subsp. aureus T0131] Length = 273 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/290 (13%), Positives = 80/290 (27%), Gaps = 25/290 (8%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQ-DAS 59 M +++F+K GN +++ + + N L + +Q+ I Q D Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI-RGILVAKENRDGSISV 118 D + + S + CGN + L K F+ G + Sbjct: 60 NDFHLVM-----SGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQY 114 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 + +++P + I ++ P Sbjct: 115 YEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQH----------- 163 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVAS 236 + +F + + + E + + +CGS A V + Sbjct: 164 LVEAFVREQQWSHKYKTVGMMLFDEQHQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNN 223 Query: 237 GCLHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 224 YQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|34763520|ref|ZP_00144460.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886803|gb|EAA23936.1| Diaminopimelate epimerase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 265 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 76/275 (27%), Gaps = 22/275 (8%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K+ GN ++ID ++ + + N + +Q+ I D ++ Sbjct: 8 LDFIKINPAGNITILIDNFDIYNKNIPKISEEIMKETNLYAEQVGFIR-------DNHLQ 60 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 ++ + CGN R L R K G V + Sbjct: 61 MMGGE-----FCGNASRSFASLLAFRDK-------DFSEQKNYSITCSGENEVLDVDVRE 108 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 D ++ L + + ++ ++ Sbjct: 109 DGAKNKFLAKIKMPKFISLEEIKIDGYKLGLVRFSGINHFIFNIKENKEVSFENIIDLVK 168 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-LTAACGSAACASVVASGCLHKTNR 244 + +S + R + E G G +C S A +R Sbjct: 169 KYLSNENYSAFGIMFFDRDNLSMKPYVYVKEVGSGVYENSCASGTTALGYYLKKYKNLDR 228 Query: 245 AVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + G L +N+ + + G + EGK+ Sbjct: 229 -AKIIQPNGWLE-YIIENDEMCIDGPVEIIAEGKV 261 >gi|302334095|gb|ADL24288.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus JKD6159] Length = 273 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 85/288 (29%), Gaps = 21/288 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M +++F+K GN +++ + + N L + +Q+ I Q+ Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSKHDASEY-ASIANQLMAATHVCCEQVGFIESTQNDDG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 + F +++ + CGN + L K F+ + + Sbjct: 60 NNFHLVMSGNE----FCGNATMSYIHHLQESHLLKDQQFKVK------VSGCSDLVQCAI 109 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + +P A + + + +V + + + L + Sbjct: 110 HDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVNQVTTEIQHL----V 165 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSA-ACASVVASGC 238 +F + + + + E + + +CGS A V + Sbjct: 166 ETFVREQQWNDKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNYQ 225 Query: 239 LHKTNRAVSVKMLGGGLLIEWHD----NNHVFMTGEAKKEWEGKLDIK 282 + + +V GG +L+ + G+ GK I+ Sbjct: 226 RNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE 273 >gi|226312407|ref|YP_002772301.1| hypothetical protein BBR47_28200 [Brevibacillus brevis NBRC 100599] gi|226095355|dbj|BAH43797.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 285 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 31/291 (10%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 +DF K N +++ + T A +S H +Q+ I + A ++ Sbjct: 5 IDFIKFNPTQNMTILVKNNHPAEEYTHIASKMMSYAS-VHAEQVGFIEKPNNYGAAAHLQ 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + + CGN + + + F I ++ + + Sbjct: 64 MAGGE-----FCGNACMALALLIAHENGLQHNDFTEIVLEASGTDHFVVCQVKRIKDEYY 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN----PHAIFFVEDDLYH---- 177 +PL + ++ + + F + A+ L Sbjct: 119 CQVSMPLPKKIEQQSINYDGDEINLVIVRYQDFFHIVIEVEQFSEAVRKRAQSLAKLLGV 178 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASG 237 S +L P +E L WE G CGS + Sbjct: 179 TVGVSLIGVLLYQPASNELAPLIFVPSLDS-----MIWESG------CGSGTASLGAYLA 227 Query: 238 CLHKTNRAVSVKMLGGGLLI--EWHDNN--HVFMTGEAKKEWEGK--LDIK 282 +++ + ++ GG + + +W + + G +GK ++I+ Sbjct: 228 WKKQSDISAHIRQPGGTIHVTADWQKEEVTSLKIEGAVGIVAQGKAFIEIQ 278 >gi|15614634|ref|NP_242937.1| hypothetical protein BH2071 [Bacillus halodurans C-125] gi|10174690|dbj|BAB05790.1| BH2071 [Bacillus halodurans C-125] Length = 277 Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 81/280 (28%), Gaps = 19/280 (6%) Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIR 65 ++F K N ++++ + + D+ + +Q+ I + A + Sbjct: 5 IEFIKFNPTQNMTILVE-TNDPIGEYKHIAEKIMSYDSVYAEQVGFIEKPLNRQAAAHLE 63 Query: 66 IINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 + + CGN + + S + I + +N + Sbjct: 64 MAGGE-----FCGNACMALAALIASEKGLRPTELMEIVLEVSGTDNLVMCQVERTLDEFH 118 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---VVSMGNPHAIFFVEDDLYHYDLAS 182 +PL + ++ + F V+ + + + I + L Sbjct: 119 CQVTMPLPKQIEQKIVKYDGSEMNLIIVRYQEFIHIVIEVDDFNKIVREKAQSLAKLLGV 178 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 + + +A + + LD WERG CGS + +K Sbjct: 179 TLGTNLIGILLYKSNTSELAPLIFVPDLDSMIWERG------CGSGTASLGAYLAWKNKK 232 Query: 243 NRAVSVKMLGGGLLI----EWHDNNHVFMTGEAKKEWEGK 278 +K GG + + E + + G GK Sbjct: 233 EIVAKIKQPGGTIQVIATCEEEKLTSLKIEGSVSIVARGK 272 >gi|255524201|ref|ZP_05391161.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|255512186|gb|EET88466.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] Length = 31 Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 6 VDFAKMEGIGNKILVIDMRGCHD 28 + F KM+G GN +VID R Sbjct: 1 MKFTKMQGTGNDFIVIDDRKNSF 23 >gi|50290607|ref|XP_447736.1| hypothetical protein [Candida glabrata CBS 138] gi|49527047|emb|CAG60683.1| unnamed protein product [Candida glabrata] Length = 293 Score = 50.9 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 30/250 (12%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I+ Q+ D +RI SE+ G+ + + + I G + + Sbjct: 55 FIYKSQNPQADYKVRIFTP-VSELPFAGHPTVGTCKAYLDIVGK------PISGNYIVHQ 107 Query: 111 NR-DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 G + +++ + I+ + +A + + + V H + P ++ G ++ Sbjct: 108 ECAAGLVPIEIKDGIVSFSAPRVAPTELSDEVIAEYTKIVGHPYTHRPQMIDSGPQWVVY 167 Query: 170 FVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA----- 224 VED Y++ L + ++ + IA S ++ R + Sbjct: 168 LVEDADTCYNINPNFQNLKLLNLDNDHSGVIIAGPRSDNEWEM----RAFVPVLSVPEDP 223 Query: 225 -CGSAACASVVASGCLHKTNRAVSVK-MLGGGL--------LIEWHDNNHVFMTG--EAK 272 CGS A A + + +VK GG L I + V+ G Sbjct: 224 VCGSGAAAFIGHLQQRFQYKETTNVKITQGGRLNRNGLIVGQINLDNEKPVYKIGGVPVT 283 Query: 273 KEWEGKLDIK 282 +G + ++ Sbjct: 284 VV-DGTITVR 292 >gi|306821068|ref|ZP_07454686.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550904|gb|EFM38877.1| diaminopimelate epimerase DapF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 275 Score = 50.5 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 75/278 (26%), Gaps = 36/278 (12%) Query: 20 VIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGN 79 ++D +I + L N + +Q+ + + + +R+ G + CGN Sbjct: 18 ILDEVEKAKHI--EIAKKLMDYSNLYAEQVGFVEKMKTDDDNIAVRLQMMGG---EFCGN 72 Query: 80 GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG-----SISVDMGEPILDWKLIPLAR 134 R + + + I G +V + I + Sbjct: 73 ATRSLAAL---LVHYDHKSIRNIGDNYYVDVETSGLEKVLRCTVQKLDDFTYMSKIAMPL 129 Query: 135 SFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFS 194 + + V G H I V+ + + + Sbjct: 130 PSEMPTELLL------DDKYKLYRVDFDGISHFIIDVKTVEDKNQIFNLIKNYIDSENYD 183 Query: 195 EGVNLSIARVTSL-------ESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVS 247 + ++ D WER +C S A A ++ + Sbjct: 184 AFGIMFYDFDIDYLTPLVYVKATDSLFWER------SCASGTSAVGAALSYIYSKELNLD 237 Query: 248 VKMLGGGLLIEWHDNNHVF----MTGEAKKEWEGKLDI 281 + GG L I+ V + G+ + G +++ Sbjct: 238 ISQPGGVLSIQTRLKYGVISDINLNGKVEIVARGTVNV 275 >gi|332798764|ref|YP_004460263.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1] gi|332696499|gb|AEE90956.1| hypothetical protein TepRe1_0771 [Tepidanaerobacter sp. Re1] Length = 264 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 66/241 (27%), Gaps = 25/241 (10%) Query: 45 HFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRG 104 H +Q+ I + + + CGN ++ + F Sbjct: 41 HAEQVGFIVPPSKKDSVIRLEMAGGE-----FCGNATLSAAAYVRYKGLSDKENFSIDAS 95 Query: 105 ILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNP--FVVSM 162 A E + ++P A+ DKM+ + ++ V Sbjct: 96 G--AAEPIRCRVEKVNTYCYNTSCIMPPAKRIDKMELELQGKIIKGYIVEFEGISHFVLE 153 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 + + E + I ++ ++ +ERG Sbjct: 154 TKEEFVEYSEVTQALKKAIDTNAIGVIPYETIRDDTYKIKPFVYVKEINSNVFERG---- 209 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDN----NHVFMTGEAKKEWEGK 278 CGS + A + +R + V GG + + D V +T EG+ Sbjct: 210 --CGSGSLALGTYLKRVRGISREIRVVQPGGVIRVGIADEFFISTDVILT------CEGR 261 Query: 279 L 279 + Sbjct: 262 I 262 >gi|255644698|gb|ACU22851.1| unknown [Glycine max] Length = 301 Score = 48.2 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 70/229 (30%), Gaps = 14/229 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET--IRGILVAKENRDGSISVD 119 +R SE+ CG+ + S + E I GIL AK+ +I+ Sbjct: 70 FDLRWFTP-VSEINLCGHATLAAAHTIFSSGLVDTDVVEFVAISGILTAKKIPAINITSA 128 Query: 120 MGEPILDWKL---IPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + + + L D + F L ++ + + + Sbjct: 129 SDLQKGEAQDGFYVELNFPADPVVEFNFDETSQISGALNGASIIDIKRTQDGGDLVVVVT 188 Query: 177 HYDLASFGNLLAKHPMFSEG---VNLSIARVTSLESLDLRTW--ERGVGLTAACGSAACA 231 + + G + IA S R + + GV CG A CA Sbjct: 189 SGRVVEELQPQLDAIVKCPGRGLIVTGIAPPGSEFDFCSRFFCPKLGVNEDPVCGGAHCA 248 Query: 232 SV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEG 277 S L K + GG L + + N V + G+A K EG Sbjct: 249 LAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKVMEG 297 >gi|255523493|ref|ZP_05390461.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296186548|ref|ZP_06854951.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7] gi|255512750|gb|EET89022.1| diaminopimelate epimerase [Clostridium carboxidivorans P7] gi|296048995|gb|EFG88426.1| hypothetical protein CLCAR_2002 [Clostridium carboxidivorans P7] Length = 51 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 239 LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 ++ + V +KMLGG LLI ++ MTGE ++ EG L Sbjct: 1 MNLVDEKVKIKMLGGELLIRIDAAWNIEMTGEVRQIAEGTL 41 >gi|239995939|ref|ZP_04716463.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126] Length = 38 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 234 VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVF-MTGE 270 K + V V + GG L I W ++V MTG Sbjct: 1 AIGQIQGKLGKDVRVDLPGGSLRIRWPGPDNVLKMTGP 38 >gi|330684131|gb|EGG95880.1| diaminopimelate epimerase family protein [Staphylococcus epidermidis VCU121] Length = 279 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 81/289 (28%), Gaps = 21/289 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M +++F+K GN +++ + + A +++ + +Q+ I Sbjct: 1 MNRQVIEFSKYNPSGNMTILVHSQHHPSDYAKIANRLMAS-THVCCEQVGFIESNNLNHG 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +++ + CGN + +L ++ + + + +I Sbjct: 60 DDCRLVMSGNE----FCGNATMSYMHYLQEH--QRLTAQQCHLNVSGCDDLVPCTIHGHQ 113 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + + + + +V + I + + Sbjct: 114 QYEVGMPQAQHVTTEY----LHIAQHMWQAIKITYESYVHYVIPIEEITAT----FKQQV 165 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE-RGVGLTAACGSAACASVVASGCL 239 A F + + + E + + +CGS A + V Sbjct: 166 AQFVREQQWDEQYKTIGIMLFNVQEQYLHPLIYIPEVKSLIWENSCGSGAASIGVFHNYQ 225 Query: 240 HKTN-RAVSVKMLGGGLLIE---WHDNN-HVFMTGEAKKEWEGKLDIKT 283 + + V GG + + +N + G G+ I+ Sbjct: 226 SQQSCEDYIVYQPGGSISVTSAYCSENGYRTSIKGRVSTVARGQAYIEE 274 >gi|255521954|ref|ZP_05389191.1| diaminopimelate epimerase [Listeria monocytogenes FSL J1-175] Length = 66 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 9/64 (14%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHD-----NITSDAINALSTDDN--THFDQIMLIH 53 M++ + F K+ G N ++D H ++ L + D I + Sbjct: 1 MET--IHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDRKHSLGGADGIXYVT 58 Query: 54 DFQD 57 + Sbjct: 59 KSSE 62 >gi|217072906|gb|ACJ84813.1| unknown [Medicago truncatula] Length = 292 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 13/229 (5%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFET--IRGILVAKENRDGSISVD 119 +R EV CG+ L S E GIL AK S Sbjct: 64 FGLRWFTPVA-EVNLCGHATLAAAHTLLSSGLVDKNAIEFVTRSGILTAKRTDVTSALNL 122 Query: 120 MGEPILDWKLIPLARSFDKM-----DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I L D + + G +N + + + G+ + + Sbjct: 123 QNGEAPVGFYIELDFPADPIAEFNSNDTSLISGALNGASIIDIKRTTNGDNLLVLVTSGE 182 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW-ERGVGLTAACGSAACASV 233 ++ + + K P V + + + G+ CGSA C Sbjct: 183 -NVTEVQPQFDAIVKCPGMGIIVTGIAPPESGFDFYSRYFCPKHGINEDPVCGSAHCGLA 241 Query: 234 -VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 S L K + GG L I + VF+ G+A EG + Sbjct: 242 PYWSKKLGKCDLKAYQASARGGILNIHIDEQKQRVFLRGKAVTVMEGSV 290 >gi|331083333|ref|ZP_08332446.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404414|gb|EGG83959.1| hypothetical protein HMPREF0992_01370 [Lachnospiraceae bacterium 6_1_63FAA] Length = 259 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 68/256 (26%), Gaps = 29/256 (11%) Query: 32 SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 L + H +Q+ + QD S ++++ + CGN R L+ Sbjct: 28 PAISRELLCMEELHGEQVGFVEKMQDGS--FHMQMMGGE-----FCGNATRSFGYLLSML 80 Query: 92 MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151 + K+ K E +PL ++ Sbjct: 81 SEEKAEDVWVDVSGSQKKLKV-----AVDMEKGTARTEMPLPMEIKEISVKE-------- 127 Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 +V I + + + + + + + Sbjct: 128 ---EKYSMVVFEGICHIIVNSAPKAQEFVDELIEKAKRV-CPCDAYGVMFLEESKMTPVV 183 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNNHVF--- 266 + ++CGS + + V T V + GG + +N VF Sbjct: 184 YVESTTSMVWESSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENGKVFSCK 243 Query: 267 MTGEAKKEWEGKLDIK 282 M G E K+DIK Sbjct: 244 MGGPVTISEEMKVDIK 259 >gi|172061314|ref|YP_001808966.1| PhzF family phenazine biosynthesis protein [Burkholderia ambifaria MC40-6] gi|171993831|gb|ACB64750.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria MC40-6] Length = 293 Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 58/241 (24%), Gaps = 15/241 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D D +RI G E+ G+ R G+ Sbjct: 52 FVCTPTDPEADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110 Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + P D P+ + + + P VV + + Sbjct: 111 ELREQADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGAPWLVVRLTS 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 A + D ++ + A + G G A Sbjct: 171 ADACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228 Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 GSA A + T R + G + + + D+ +++ G +G Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRDGRIAVRYDDDGTIWIGGNVVTVVDGT 288 Query: 279 L 279 Sbjct: 289 F 289 >gi|260905985|ref|ZP_05914307.1| phenazine biosynthesis protein [Brevibacterium linens BL2] Length = 278 Score = 46.3 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 23/242 (9%) Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVA 108 ++ + + RI +E+ G+ + R R + + TF T G + Sbjct: 47 VVFVDRPRSDPTRVQCRIFTP-VNELPFAGHPLIGAARVHLDRHQLSNATFTTPSGAVRI 105 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 ++ + SV + + + F P + G H + Sbjct: 106 SKDPADTSSVQITQA--------MPTEVATEHAAELKPALGTSSFAGAPALYDAGARHLV 157 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 + +L + + F + A + + + GV AA GSA Sbjct: 158 VPIR---TVNELMAIRPDHRRLSTFEDMAINCYAAENGVLFNRMFSPAYGVQEDAATGSA 214 Query: 229 ACASVVASGCLHKTNRAVSVKMLGG-------GLLIEWHDNNH----VFMTGEAKKEWEG 277 + + + + + V++ G + + + V ++G G Sbjct: 215 CAPIALHAVSIGLHDSLLRVEVRQGHKLGKDCRMTVSIRQDQEPQCAVSLSGATALVAHG 274 Query: 278 KL 279 L Sbjct: 275 TL 276 >gi|260588942|ref|ZP_05854855.1| conserved hypothetical protein [Blautia hansenii DSM 20583] gi|260540721|gb|EEX21290.1| conserved hypothetical protein [Blautia hansenii DSM 20583] Length = 259 Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 70/256 (27%), Gaps = 29/256 (11%) Query: 32 SDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR 91 L + H +Q+ + QD S ++++ + CGN R L+ Sbjct: 28 PAISRELLCMEELHGEQVGFVEKMQDGS--FHMQMMGGE-----FCGNATRSFGYLLSML 80 Query: 92 MKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNH 151 + K+ K + + + V+ Sbjct: 81 SEEKAEDVWVDVSGSKKKLKVTVDME---------------KGTARTEMSLPMEMTEVSV 125 Query: 152 LFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD 211 + VV G H I + P + + + + + Sbjct: 126 KEEKYSMVVFEGICHIIVNSAPKAQEFVDELIEEAKRVCPC--DAYGVMFLEESKMTPVV 183 Query: 212 LRTWERGVGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGGLLIEW-HDNNHVF--- 266 + ++CGS + + V T V + GG + +N VF Sbjct: 184 YVESTTSMVWESSCGSGSMGAAVYLSKDADTGEFVYELHQPGGMIEAYVKKENGKVFSCK 243 Query: 267 MTGEAKKEWEGKLDIK 282 M G E K+DIK Sbjct: 244 MGGPVTISEEMKVDIK 259 >gi|302338226|ref|YP_003803432.1| hypothetical protein Spirs_1711 [Spirochaeta smaragdinae DSM 11293] gi|301635411|gb|ADK80838.1| hypothetical protein Spirs_1711 [Spirochaeta smaragdinae DSM 11293] Length = 290 Score = 45.9 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 31/281 (11%), Positives = 64/281 (22%), Gaps = 34/281 (12%) Query: 17 KILVIDMRGCHDN------ITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCD 70 L+I+ + + D I D I+L++ ++ +V Sbjct: 14 DFLLINALTNDISEHLFDRKSVDLI--CDRRRGVGGDGIILLYPSREQNVGLHFLSPLSG 71 Query: 71 GSE-----VQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125 E + + F R E + +++G PI Sbjct: 72 TQEKKREDLNASALLCASRFAFDFGLFNRDRLVIEGPTKDIEITCIDSTLFQIELGIPIS 131 Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185 + DR H+ S A + Sbjct: 132 LS-----GEEIKEDDRQEVHLWKPLQDQSIAYTCCSFSEFPARATAMVPGIPETERAEAF 186 Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-------LTAACGS-AACASVVASG 237 ++A SL + + T C S + V + Sbjct: 187 CRHVRKQDIGSAVFAVAEQQSLVAYSPFPAQGPGDAVIEAAAATLLCASGGSSGREVTAR 246 Query: 238 CLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 +++ L + W + + + G + G Sbjct: 247 KVNRNQSE--------ELYVTWTGSGSLVVGGVPHYVFTGN 279 >gi|256377977|ref|YP_003101637.1| hypothetical protein Amir_3920 [Actinosynnema mirum DSM 43827] gi|255922280|gb|ACU37791.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827] Length = 270 Score = 45.5 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 82/282 (29%), Gaps = 21/282 (7%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60 M S +DF K++ N L++ + D L ++ H +Q+ + Sbjct: 1 MISHEIDFVKLDPTQNMTLLV-RTEHPEEEHRDIALRLMAYEHLHAEQVGFVRKPGSPDA 59 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +R+ +C G A++ + Sbjct: 60 DISLRM-AGGEFCGNACMALAALAAPPDELAGGHPVDVVLEASG---ARDLVRCRVLRHA 115 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 E + +PL S ++ + + L VV G P L Sbjct: 116 REYTCELA-MPLPESVERGADGVALVRYDDSLH----VVVETGRPDRALRTWAQRLAARL 170 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 + M E + + + + L WERG CGS A A Sbjct: 171 GEREDASLVGVMLYEPRSGHLTPLVHVPLLGSAVWERG------CGSGAAALAAYLAWKG 224 Query: 241 KTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKKEWEG 277 +T+ V+ GG + + + V + G + EG Sbjct: 225 RTSVTTRVRQPGGVMTVAADHDARGGLTGVRVQGTVRVVAEG 266 >gi|260887994|ref|ZP_05899257.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|330838527|ref|YP_004413107.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185] gi|260862245|gb|EEX76745.1| putative diaminopimelate epimerase [Selenomonas sputigena ATCC 35185] gi|329746291|gb|AEB99647.1| hypothetical protein Selsp_0678 [Selenomonas sputigena ATCC 35185] Length = 265 Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 62/227 (27%), Gaps = 24/227 (10%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 A + + S + CGN + F E + Sbjct: 52 HAEEALFRIEMSGGEFCGNATLSAAALAAAEGAESRFLVECSGAPEPLRAE----AHPLG 107 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 L +P A ++ D F G VS+ + DL D Sbjct: 108 SGRWLARAEMPPAHEVRRISLDGFSFGG-------AAICVSLPGIAHLVVEAADLSAADY 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG-----LTAACGSAACASVVA 235 L + + E +R + ACGS + A +A Sbjct: 161 DELLARLMRETDADAYGVVPF-ERMGREHFRIRPYVAVPSAKSHVFERACGSGSLALALA 219 Query: 236 -SGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + ++V+ GG LL+E F+ GE G +++ Sbjct: 220 EGSECGR----IAVEQPGGTLLVE--TGRRFFLEGEVLISCRGTVEL 260 >gi|115352440|ref|YP_774279.1| PhzF family phenazine biosynthesis protein [Burkholderia ambifaria AMMD] gi|115282428|gb|ABI87945.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria AMMD] Length = 293 Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 58/241 (24%), Gaps = 15/241 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D D +RI G E+ G+ R G+ Sbjct: 52 FVCTPTDLDADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110 Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + P D P+ + + + P VV + + Sbjct: 111 ELRELADGWAFAAPPARFTPLDRADYPVLAAALRSNAIDPDAEPCAVDNGAPWLVVRLTS 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 A + D ++ + A + G G A Sbjct: 171 VEACIGLAPDPAALGALIHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228 Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 GSA A + T R + G + + + D+ +++ G +G Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRAGRIAVRYDDDGTIWIGGNVVTVVDGT 288 Query: 279 L 279 Sbjct: 289 F 289 >gi|224109124|ref|XP_002315091.1| predicted protein [Populus trichocarpa] gi|222864131|gb|EEF01262.1| predicted protein [Populus trichocarpa] Length = 295 Score = 44.8 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 60/234 (25%), Gaps = 24/234 (10%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R EV CG+ L S S E + + Sbjct: 68 FRLRWFTPVA-EVNLCGHATLAASHTLFSNGLVSSDIIEFDTLSGILTAKKVPQSINPES 126 Query: 122 EPILDWK-------LIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + K P+ + + +N + + + G+ + D Sbjct: 127 VSNGEAKESFLIELDFPVVPTTEFFIDAVSISKALNSAPIIDLKKTTFGDLFVVLPSGKD 186 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGSA 228 + + + I + + R G+ CGSA Sbjct: 187 VAEIN-------PEFGEILKCPGRGVIVSGVAPPESGFDFYSRFFCPKLGINEDPVCGSA 239 Query: 229 ACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 CA S L K + G L I + N V + G+A EG + Sbjct: 240 HCALAPYWSKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLRGKAVTVMEGSV 293 >gi|68473476|ref|XP_719296.1| hypothetical protein CaO19.13065 [Candida albicans SC5314] gi|46441108|gb|EAL00408.1| hypothetical protein CaO19.13065 [Candida albicans SC5314] Length = 302 Score = 44.8 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 32/259 (12%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I + + D IRI G+E+ G+ L K K G ++ + Sbjct: 48 FILTPKSSIADYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQIIQEC 103 Query: 111 NRDGSISVDMGEPILDWKLIPLAR----------SFDKMDRDRFHIGPVNHLFLRNPFVV 160 P + +P D + + P ++ Sbjct: 104 GAGLVKISVEKTPNNNSNELPFLLSFQLPYFKFHEIDDKVIEELQHSWNGTNIIGKPVLI 163 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE---- 216 G A+F + DL + + + + + + + + Sbjct: 164 DAGPKWAVFQLGSGKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPA 223 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRA---VSVKM-----LGGGLLIEW------HDN 262 GV ACGS + A + + + G + ++ + + Sbjct: 224 VGVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERGAKIQVKVNRLSTKNGD 283 Query: 263 NHVFMTGEAKKEWEGKLDI 281 + + G A +EG I Sbjct: 284 LSIHVGGHAITCFEGTYSI 302 >gi|170700637|ref|ZP_02891635.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria IOP40-10] gi|170134456|gb|EDT02786.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria IOP40-10] Length = 293 Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 58/241 (24%), Gaps = 15/241 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D D +RI G E+ G+ R G+ Sbjct: 52 FVCTPTDPEADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110 Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + P D P+ + + D P VV + + Sbjct: 111 ELREQADGWAFAAPPARFTPLDRADYPVLAAALRSDAIDPDAEPCAVDNGAPWLVVRLTS 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 A + D ++ + A + G G A Sbjct: 171 AEACVGLAPDPAALGALVHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228 Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 GSA A + T R + G + + + D+ +++ G +G Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRDGRIAVRYDDDGTIWIGGHVVTVVDGT 288 Query: 279 L 279 Sbjct: 289 F 289 >gi|193077841|gb|ABO12717.2| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978] Length = 289 Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 86/286 (30%), Gaps = 43/286 (15%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPAIDSQADYQVRIFTP-QSEL 72 Query: 75 QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G+ ++ + K + G++ N IS ++ +P + Sbjct: 73 PFAGHPTIGTAYALLEAGLIKAKEGRLVQQCAAGLVTLTVNDSNHISFELPKPKITP--- 129 Query: 131 PLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNPHAI---FFVEDDLYHYDLASFGNL 186 D + ++ I N +V +G + E L + Sbjct: 130 -----LDALQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLNALKQ 184 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLR-----TWERGVGLTAACGSAACASVVASGCLHK 241 + + ++ + G+ + AS + + Sbjct: 185 FSLDMKVTGSTIYGFYEESNEHKRIEVRSFAPAYGVNEDPVCGSGNGSVASFIRYHGILP 244 Query: 242 TNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + G G L +E H + + ++G A +G + + Sbjct: 245 AQNDVVLSSQGQALGREGQLQLELHQD-KILVSGAAVTCIDGTIKL 289 >gi|196014074|ref|XP_002116897.1| hypothetical protein TRIADDRAFT_60898 [Trichoplax adhaerens] gi|190580615|gb|EDV20697.1| hypothetical protein TRIADDRAFT_60898 [Trichoplax adhaerens] Length = 298 Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 84/289 (29%), Gaps = 39/289 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V+D DN+T + ++ + N +L + +R +E+ CG Sbjct: 24 VVLDA----DNLTEKDMKNIAREMNNSATGYVL----TSQRANFRLRYFTPSDAEITFCG 75 Query: 79 NGMRCVV-------RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 + + RF + K + E G++ + + G + P+ P Sbjct: 76 HVTLATLATIAKEKRFGADQGIVKQYDIEINAGLVKGEIDWSGKEPIISFFPLSINLD-P 134 Query: 132 LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHP 191 L F+ ++ + P ++ ++F L L Sbjct: 135 L--PFNHAQLAEALAINLDAIDQSKPILME-KTNRYVYFAIKSL--QQLKELNINQKTAK 189 Query: 192 MFSEGVNLSIARVTSLESLDLRTWER--------GVGLTAACGSAACASVVASGCLHKTN 243 + +E N+ + + +D + G+ GS+ Sbjct: 190 VHAEQHNIILYCALTPHGVDENSHAHSRVFGPLIGIAEDPVTGSSQGPLTAYMVRNGMIP 249 Query: 244 RA-VSVKMLGGG---------LLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 + V G + I D V ++G A + + I Sbjct: 250 QPLAKVNTEQGDFVGRPGRTTVYILRRDPIEVKVSGPAFHVFSADIQIP 298 >gi|241895470|ref|ZP_04782766.1| possible phenazine biosynthesis protein [Weissella paramesenteroides ATCC 33313] gi|241871444|gb|EER75195.1| possible phenazine biosynthesis protein [Weissella paramesenteroides ATCC 33313] Length = 287 Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 73/244 (29%), Gaps = 21/244 (8%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106 + ++ D +RI +E+ G+ M + + E +G++ Sbjct: 52 FVCTPTNSQADYRLRIFTP-QNELPFAGHPMIGSAYAVLKSGLIPKHGQYLVQECQQGLV 110 Query: 107 VAKENRDGSI---SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 G P+ ++ +++ + ++ + +S Sbjct: 111 RIDVTDAGLFLTLPESKKSPLQAEQVKAFSKALGVSASEIHLAATIDVGAVWYTLQLSSA 170 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA 223 + +L +A + + E + V S + G Sbjct: 171 EQVLALQPDMNLLSQAIAEGVTGVTVFGQYPENSQTNF-EVRSFAPNE------GADEDP 223 Query: 224 ACGSAACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEG 277 CGS V + + V G G + +++ D+N + + G A+ +G Sbjct: 224 VCGSGNGCVAVMVRDHQLLSSSDYVASQGSCLGRDGYVSVKFSDDNQILLGGFAEICIDG 283 Query: 278 KLDI 281 +L I Sbjct: 284 QLSI 287 >gi|297843128|ref|XP_002889445.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis lyrata subsp. lyrata] gi|297335287|gb|EFH65704.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis lyrata subsp. lyrata] Length = 283 Score = 44.4 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 67/244 (27%), Gaps = 34/244 (13%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFT--FETIRGILVA 108 + +R EV CG+ L S S T F+T+ G L A Sbjct: 57 FLTPIIGDFPRFRLRWFTPVA-EVDLCGHATLASAHVLFSTGLIDSETVKFDTLSGALTA 115 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 K I D F + ++ ++ + Sbjct: 116 KHL-----------------KIDDEIELDFPLVPTFEVNYIDDDLSLFSKALNGATIVDV 158 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSI----------ARVTSLESLDLRTWERG 218 + D+ L+S+ ++ P E A T G Sbjct: 159 KATKKDI-LVVLSSWEAVIELQPRLDEISKCPCEGMMVSAAASAESTYDFCSRYFAPRFG 217 Query: 219 VGLTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEW 275 + GSA CA S ++K + GG L + + V + G+A Sbjct: 218 INEDPVTGSAHCALAHYWSLKMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAVTVM 277 Query: 276 EGKL 279 EG + Sbjct: 278 EGYV 281 >gi|126642335|ref|YP_001085319.1| hypothetical protein A1S_2294 [Acinetobacter baumannii ATCC 17978] Length = 264 Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 72/250 (28%), Gaps = 29/250 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGN----GMRCVVRFLTSRMKRKSFTFETIRGIL 106 + D+ D +RI SE+ G+ ++ + K + G++ Sbjct: 25 FVLPAIDSQADYQVRIFTP-QSELPFAGHPTIGTAYALLEAGLIKAKEGRLVQQCAAGLV 83 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF-HIGPVNHLFLRNPFVVSMGNP 165 N IS ++ +P + D + ++ I N +V +G Sbjct: 84 TLTVNDSNHISFELPKPKITP--------LDALQTEKLAEILKCKINTQWNAALVDVGAR 135 Query: 166 HAI---FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLR-----TWER 217 + E L + + + ++ + Sbjct: 136 WVVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIYGFYEESNEHKRIEVRSFAPAYGV 195 Query: 218 GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEA 271 G+ + AS + + V + G G L +E H + + ++G A Sbjct: 196 NEDPVCGSGNGSVASFIRYHGILPAQNDVVLSSQGQALGREGQLQLELHQD-KILVSGAA 254 Query: 272 KKEWEGKLDI 281 +G + + Sbjct: 255 VTCIDGTIKL 264 >gi|255019173|ref|ZP_05291299.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515] Length = 72 Score = 44.0 bits (102), Expect = 0.025, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 7/53 (13%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHD-NIT----SDAINALSTDDN--THFDQI 49 + + F K+ G N ++D G + + +D L ++ D I Sbjct: 2 ATIHFTKVHGSQNDFFLVDEEGNQIMDWSDAKRADFAIKLCDREHSLGGADGI 54 >gi|149689924|ref|XP_001503650.1| PREDICTED: similar to Phenazine biosynthesis-like domain-containing protein (MAWD-binding protein) (Unknown protein 32 from 2D-page of liver tissue) [Equus caballus] Length = 288 Score = 44.0 bits (102), Expect = 0.026, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 63/228 (27%), Gaps = 16/228 (7%) Query: 62 AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +R EV CG V F + + TF T+ G L AK DG + Sbjct: 65 FGLRWFTPAC-EVPLCGHATLASAAVLFHKIKNVNSTLTFVTLSGELRAKREEDGIVLDF 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + D R V + F + + Sbjct: 124 PLYPAHPQDFHEVEDLIKTAIGDTLIQDICYSPDTRKLLVRLSDTYNRSFLENLKVNTQN 183 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG----SAACASVVA 235 L N +G+ L++ ++ + R + + +V++ Sbjct: 184 LLQVENTGKV-----KGLILTLKGDPDGQAQAFDFYSRYFAPWLGVAEDPVTGSAHTVLS 238 Query: 236 SGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 S + + GG L I H + V + G EG L Sbjct: 239 SYWSQQLGKKNMHACQCSCRGGELEISLHPDGRVDIRGSVAIVLEGTL 286 >gi|254251771|ref|ZP_04945089.1| hypothetical protein BDAG_00968 [Burkholderia dolosa AUO158] gi|124894380|gb|EAY68260.1| hypothetical protein BDAG_00968 [Burkholderia dolosa AUO158] Length = 293 Score = 44.0 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 13/240 (5%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILV 107 + D D +RI G + + F+ S + ++ + G +V Sbjct: 52 FVCTPTDPEADYRVRIFTPGGELPFAGHPTLGTAHAFVESGARPRTPGRLIQQCGVGRVV 111 Query: 108 AKENRDGSIS--VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 +E DG LD P + + D P VV + + Sbjct: 112 LREQPDGWAFAAPPARFTPLDRADYPALAAALRCDAIDPDAEPCAVDNGAPWLVVRLTSA 171 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 A + D + + ++ + A + G+G Sbjct: 172 DACIGLAPDPAALEAITHRYGTHGVAAYAPHPDGGPATF--EIRCLMTGGGFGIGEDPVT 229 Query: 226 GSAACASVVASGCLHKTNRAV-SVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 GSA A + +V+ G + + + D+ ++ G A +G Sbjct: 230 GSANAALAGLLVRQQRRPGPSYTVRQGTAIGRDGRVFVRYDDDGTTWIGGRAVTVVDGTF 289 >gi|255559496|ref|XP_002520768.1| phenazine biosynthesis protein, putative [Ricinus communis] gi|223540153|gb|EEF41730.1| phenazine biosynthesis protein, putative [Ricinus communis] Length = 489 Score = 44.0 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 62/232 (26%), Gaps = 16/232 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R EV+ CG+ + S S E + + IS Sbjct: 258 FRLRWFTPVA-EVKLCGHATLAASHTIFSNGLVNSDIIEFDTLSGILTAKKVSEISKTDV 316 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 I + + L + + ++ + I + + Sbjct: 317 SSIQNGEANELFL-IELNFPTVLSTEFNSVDLAPISKALNGASIIDIRRTTTADDLFVVL 375 Query: 182 -SFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTAACGSAAC 230 S + P F + + I + + R G+ CGSA C Sbjct: 376 PSAKAVSELQPQFDDILKCPGRGIIVSGVAPPESGFDFYSRFFCPKYGINEDPVCGSAHC 435 Query: 231 ASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 A L K + G L I + N V + G+A EG L Sbjct: 436 ALAPYWGKKLGKCDFMAYQASPRSGILDIHLDEQNQRVLLRGKAVTVMEGSL 487 >gi|149910690|ref|ZP_01899326.1| predicted epimerase [Moritella sp. PE36] gi|149806229|gb|EDM66206.1| predicted epimerase [Moritella sp. PE36] Length = 267 Score = 44.0 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 66/227 (29%), Gaps = 18/227 (7%) Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSI 116 D +R + EV CG+G + L + + FET+ G L Sbjct: 54 NDFNLRWFTPE-VEVNLCGHGTLAMAHILKQKGLVAIGEGIVFETLSGPLEVTVGEHDID 112 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + P A + + + V G + I +++ Sbjct: 113 MLF-----------PTAELEFDTLVNTVLLELLGLKLSDVVSYVQFGPKYLIEIRNEEIL 161 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA- 235 +F L S S W G+ GSA CA V Sbjct: 162 RSLSPNFDGLNELEGRGVVVTAKSDFSHVDFVSRHFAPW-VGINEDPVTGSAHCALAVYW 220 Query: 236 SGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 + L+K GG + +E N V +TG A EG + + Sbjct: 221 AEKLNKVALKGFQASKRGGFVGVELMPNKKVKLTGSAITVIEGVIHV 267 >gi|239502909|ref|ZP_04662219.1| hypothetical protein AbauAB_11404 [Acinetobacter baumannii AB900] Length = 289 Score = 43.6 bits (101), Expect = 0.030, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 87/279 (31%), Gaps = 29/279 (10%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72 Query: 75 QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G+ ++ + K + G++ N IS ++ +P + Sbjct: 73 PFAGHPTIGTAYALLEAGLVKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132 Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 ++ + + V+ N A+ + DL S + Sbjct: 133 LQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAKAVLASQPDLNALKQFSLEMKVT 192 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 ++ + + + S + G+ + AS + + V + Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVNEDPVCGSGNGSVASFIRYHGILPAQNDVVL 251 Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G G L +E H + + + G A +G + + Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289 >gi|260776098|ref|ZP_05884993.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus ATCC BAA-450] gi|260607321|gb|EEX33586.1| phenazine biosynthesis PhzF family protein [Vibrio coralliilyticus ATCC BAA-450] Length = 232 Score = 43.6 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 73/238 (30%), Gaps = 42/238 (17%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR---KSFTFETIRGILVAKENRDGSIS 117 D +R + EV+ CG+G V L + K S TF T+ G+L K Sbjct: 20 DMRLRWFTPE-VEVKLCGHGTLAVAHVLKQQGKIATGDSITFNTLSGLLSVKVLSS---- 74 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD--- 174 D + + + L + + + + + D Sbjct: 75 ---------------TYELDFPAPELEYNQHCSEERLN---ALGLSEQQVVSYCQFDSKE 116 Query: 175 ----LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGS 227 + + + A+ T S + + GV GS Sbjct: 117 LFELTNEQAVHDLSPDFSSLIRQPGRGIIVTAQSTQSNSDIISRYFAPWVGVNEDPVTGS 176 Query: 228 AACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A CA +A K ++ V GG L IE ++ V ++G A +G L I Sbjct: 177 AHCA--LAEFWAGKIDKPVLTAYQASSRGGYLDIERVESGRVTLSGSAVIALKGTLFI 232 >gi|323496470|ref|ZP_08101528.1| putative epimerase [Vibrio sinaloensis DSM 21326] gi|323318747|gb|EGA71700.1| putative epimerase [Vibrio sinaloensis DSM 21326] Length = 266 Score = 43.6 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 65/235 (27%), Gaps = 32/235 (13%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISV 118 + D +R + EV+ CG+G V+ + G V G + Sbjct: 52 TSDMRLRWFTPE-IEVKLCGHGTLATVQIMAECG-------LINLGESVCFNTLSGPLHA 103 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD---- 174 L S ++D H+ L + + + + D Sbjct: 104 T------------LTHSGIELDFPIAHLNSAQQPDLDLVQALCLTPDDIVSYHTFDNKQL 151 Query: 175 ---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSA 228 + L + A+ + E + + GV GSA Sbjct: 152 IEVISEQVLNDLSPNFDAMRALPGRGVVITAQSSQQEYDVVSRYFAPWVGVNEDPVTGSA 211 Query: 229 ACASV--VASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 CA A+ T A GG +++ V ++G A G + + Sbjct: 212 HCALAPYWAAKLRRSTINAYQASNRGGEVMMTLQQGGRVTLSGSAVTVIRGNISV 266 >gi|15218739|ref|NP_171820.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] gi|12083232|gb|AAG48775.1|AF332412_1 unknown protein [Arabidopsis thaliana] gi|3850584|gb|AAC72124.1| ESTs gb|H37641 and gb|AA651422 come from this gene [Arabidopsis thaliana] gi|332189424|gb|AEE27545.1| Phenazine biosynthesis PhzC/PhzF protein [Arabidopsis thaliana] Length = 286 Score = 43.6 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 62/241 (25%), Gaps = 23/241 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + +R EV CG+ L S S T E + Sbjct: 55 FLTPIIGDLPRFRLRWFTPVA-EVDLCGHATLASAHVLFSTGLVGSETVEFDTLSGILTA 113 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + D + + ++ ++ + Sbjct: 114 KHLKNDDDGEES----------SIELDFPVVPTYEVNYIDDDLSLFSKALNGATILDVKA 163 Query: 171 VEDDL------YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW---ERGVGL 221 + DL + + L EG+ ++ A + G+ Sbjct: 164 TKKDLLVVLSSWEAVIDLKPRLDEISKCPCEGMMVTAAASDGSTYDFCSRYFAPRFGINE 223 Query: 222 TAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 GSA CA S ++K + GG L + + V + G+A EG Sbjct: 224 DPVTGSAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAVTVMEGY 283 Query: 279 L 279 + Sbjct: 284 V 284 >gi|255559494|ref|XP_002520767.1| phenazine biosynthesis protein, putative [Ricinus communis] gi|223540152|gb|EEF41729.1| phenazine biosynthesis protein, putative [Ricinus communis] Length = 300 Score = 43.2 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 66/239 (27%), Gaps = 17/239 (7%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRD 113 ++ +R SEV+ CG+ L S S E + GIL AK + Sbjct: 62 NSSNPRFHLRWFTP-VSEVELCGHATLAASHALFSNGLLNSDIIEFVTLSGILTAKRIPE 120 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 S + I K D + + + Sbjct: 121 TSKTDGSSTQIGKTKE-DFLIELDFPSNQTTEFNAFDLDLISKALNGASIIDVKRTTATS 179 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTA 223 D L S + P E + I + R G+ Sbjct: 180 DDLLVVLPSARAVTELQPQIDEILQCPVGGIIVTGVAPSESGFDFVSRYFAPKFGINEDP 239 Query: 224 ACGSA-ACASVVASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKEWEGKL 279 GSA C + S L K++ GG L I + + V + G+A EG L Sbjct: 240 VTGSAHCCLAPYWSKKLGKSDLMAYQASARGGILNIHFDEQKQRVLLRGKAVTVMEGSL 298 >gi|222424459|dbj|BAH20185.1| AT1G03210 [Arabidopsis thaliana] Length = 286 Score = 43.2 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 62/241 (25%), Gaps = 23/241 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + +R EV CG+ L S S T E + Sbjct: 55 FLTPIIGDLPRFRLRWFTPVA-EVDLCGHATLASAHVLFSTGLVGSETVEFDTLSGILTA 113 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + + D + + ++ ++ + Sbjct: 114 KHLKNDDDGEES----------SIELDFPVVPTYEVNYIDDDLSLFSKALNGTTILDVKA 163 Query: 171 VEDDL------YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW---ERGVGL 221 + DL + + L EG+ ++ A + G+ Sbjct: 164 TKKDLLVVLSSWEAVIDLKPRLDEISKCPCEGMMVTAAASDGSTYDFCSRYFAPRFGINE 223 Query: 222 TAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGK 278 GSA CA S ++K + GG L + + V + G+A EG Sbjct: 224 DPVTGSAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAVTVMEGY 283 Query: 279 L 279 + Sbjct: 284 V 284 >gi|116786060|gb|ABK23955.1| unknown [Picea sitchensis] Length = 307 Score = 43.2 bits (100), Expect = 0.042, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 63/235 (26%), Gaps = 15/235 (6%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 D + + +R EV CG+ FL S K + Sbjct: 73 DDAEEFDLRWFTP-LVEVDLCGHATLASAHFLFS-AFVKCNRVLFHTKSGTLTATKVERF 130 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRN---PFVVSMGNPHAIFFVED 173 + + L K + F + L N V A Sbjct: 131 NQNESATYLGRKNERFVIELNFPQVSVFDCVSMEIPLLSNTLRGLAVESVKKTACNDFIV 190 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGS 227 +L +L + I + + + R GV CGS Sbjct: 191 ELASGELVE-NLQPEFDEIQRCSARGIIVTGLAPKQSGFDFFSRFFCPKLGVNEDPVCGS 249 Query: 228 AACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGKL 279 A CA + L KT GG L+++ ++ V + GEA G L Sbjct: 250 AHCALAPYWAKKLGKTELVAYQASKRGGKLVLQVVEDPQSVILQGEAVTVMLGSL 304 >gi|57524661|ref|NP_001003759.1| MAWD binding protein-like [Danio rerio] gi|50926029|gb|AAH79517.1| Zgc:101129 [Danio rerio] Length = 286 Score = 43.2 bits (100), Expect = 0.047, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 65/231 (28%), Gaps = 9/231 (3%) Query: 57 DASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + +R +E+ CG V F + FET+ G L +++ D Sbjct: 59 SSGSRFGLRWFTP-KTEIALCGHATLASAAVLFYLKKNANPVVVFETMSGELYVRQHEDS 117 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + D LR + + F Sbjct: 118 IIMDFPLNTPQPQDQRKIKGFLKAVVGDLPIEDVCYSPALRWLMIRLADSCDRSKFTSLS 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 DL + A+ GV CGSA +++ Sbjct: 178 PVAEDLLKSETTGEIKSVIVTIKGAPNAQPGYDFYSRFFAPWYGVAEDPVCGSAH--TIL 235 Query: 235 ASGCLHKTNRA----VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 A K N+ GG L +E D+ V ++G A+ +G L + Sbjct: 236 AGYWSEKLNKKKMLAYQCSSRGGELELEVRDDGRVNISGRAQIILQGTLKV 286 >gi|118474285|ref|YP_892632.1| hypothetical protein CFF8240_1498 [Campylobacter fetus subsp. fetus 82-40] gi|118413511|gb|ABK81931.1| protein YddE [Campylobacter fetus subsp. fetus 82-40] Length = 300 Score = 43.2 bits (100), Expect = 0.049, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 64/256 (25%), Gaps = 30/256 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I +DAS D ++R SEV CG+ + S G Sbjct: 50 FILSPKDASHDVWVRFFTP-TSEVPICGHATIAAHYARAIELGLDSTKVVQKTGAGNLLV 108 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHA 167 + + + ++ I + F + + L + P ++ Sbjct: 109 DINRC--GNDYSIVMTQGEIKIGEPFSWQIVQKLTEALGIKSDDLNSKCPVCIASTGHSK 166 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGL 221 + + L G N ++ R G+ Sbjct: 167 VMIAINLNSVLHSLKPNFELLISLSKEIGCNGYYVFTLDQN-AEILVHGRMFAPAIGINE 225 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVK------MLG------GGLLIEWHDNNH----V 265 G+A + ++ M G G + + V Sbjct: 226 DPVTGNANGPLGAYLVHYELFGNS-DLRSFKFKAMQGEAIGRTGVMEVNVTKEGTRPTLV 284 Query: 266 FMTGEAKKEWEGKLDI 281 +TG A + +L++ Sbjct: 285 QITGRAVIVFSAELEV 300 >gi|217032382|ref|ZP_03437877.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128] gi|216945949|gb|EEC24565.1| hypothetical protein HPB128_25g30 [Helicobacter pylori B128] Length = 124 Score = 42.8 bits (99), Expect = 0.064, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV-GLTAACGSAACASVV 234 L S L + N++IA + + E++ L+T+ERGV T ACG+ A + Sbjct: 10 NKEWLNSLNTLELRALRHEFNANINIAFIENKETIFLQTYERGVEDFTLACGTGMAAVFI 69 Query: 235 ASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMTGEAKKE 274 A+ + T + ++ L + ++ +F G + Sbjct: 70 AARIFYNTPKKAALIPKSNESLELSLKNDG-IFYKGAVRYI 109 >gi|169795320|ref|YP_001713113.1| putative phenazine biosynthesis-like protein [Acinetobacter baumannii AYE] gi|213158694|ref|YP_002319992.1| phenazine biosynthesis protein PhzF family [Acinetobacter baumannii AB0057] gi|215482853|ref|YP_002325056.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB307-0294] gi|301346776|ref|ZP_07227517.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB056] gi|301513208|ref|ZP_07238445.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB058] gi|301595950|ref|ZP_07240958.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB059] gi|332850430|ref|ZP_08432750.1| phenazine biosynthesis protein, PhzF family [Acinetobacter baumannii 6013150] gi|332871880|ref|ZP_08440292.1| phenazine biosynthesis protein, PhzF family [Acinetobacter baumannii 6013113] gi|169148247|emb|CAM86110.1| conserved hypothetical protein; putative Phenazine biosynthesis-like protein [Acinetobacter baumannii AYE] gi|213057854|gb|ACJ42756.1| phenazine biosynthesis protein PhzF family [Acinetobacter baumannii AB0057] gi|213985698|gb|ACJ55997.1| Phenazine biosynthesis protein phzF [Acinetobacter baumannii AB307-0294] gi|332730701|gb|EGJ62012.1| phenazine biosynthesis protein, PhzF family [Acinetobacter baumannii 6013150] gi|332731094|gb|EGJ62395.1| phenazine biosynthesis protein, PhzF family [Acinetobacter baumannii 6013113] Length = 289 Score = 42.5 bits (98), Expect = 0.068, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 29/279 (10%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72 Query: 75 QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G+ ++ + K + G++ N IS ++ +P + Sbjct: 73 PFAGHPTIGTAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132 Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 + + + V+ N A+ + DL S + Sbjct: 133 LQTEKLAEFLKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLNALKQFSLDMKVT 192 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 ++ + + + S + G+ + AS + + V + Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVYEDPVCGSGNGSVASFIRYHGILPAQNDVVL 251 Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G G L +E H + + + G A +G + + Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289 >gi|196014380|ref|XP_002117049.1| hypothetical protein TRIADDRAFT_61085 [Trichoplax adhaerens] gi|190580271|gb|EDV20355.1| hypothetical protein TRIADDRAFT_61085 [Trichoplax adhaerens] Length = 298 Score = 42.5 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 34/290 (11%), Positives = 81/290 (27%), Gaps = 41/290 (14%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V D DN+T + ++ + N +L D +R +E+ CG Sbjct: 24 VVFDA----DNLTDKDMKNIAREMNISETGYVL----TSQRADFRLRYFTPSDAEITFCG 75 Query: 79 NGMRCVVRFLTSR-------MKRKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLI 130 + + + K + E G+ + + + P ++ + Sbjct: 76 HVTLATLAMIAREKRFGADQGIVKQYNIEINAGLFKGEIDWSGNEPIISFFPPPINLDPV 135 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 P + ++ + P ++ N ++F L L Sbjct: 136 PF----NHAQLAEALAINLDIIDQSKPILIERTNR-YVYFAIKSLQE--LKELNVNQETA 188 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER--------GVGLTAACGSAACASVVASGCLHKT 242 ++E N+ + ++ +D G+ GS+ Sbjct: 189 KAYAEQHNIILYCASTPHGVDENNHAHSRVFAPLVGIAEDPVTGSSQGPLTAYMVQNGMV 248 Query: 243 NRAV-SVKMLGGG-------LLIEWHDNN--HVFMTGEAKKEWEGKLDIK 282 +++ V G + + V ++G A + + I Sbjct: 249 PQSLSKVNTEQGDFVGRPGRATVYILGRDPIEVKVSGPAFHVFSADMQIP 298 >gi|225572940|ref|ZP_03781695.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM 10507] gi|225039698|gb|EEG49944.1| hypothetical protein RUMHYD_01131 [Blautia hydrogenotrophica DSM 10507] Length = 173 Score = 42.5 bits (98), Expect = 0.069, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 3/71 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDAS 59 M + ++ +G G L++D + + + + D ++ + Sbjct: 30 MCDHRIKMSRYQGQGTDCLILDPNQNQELLAGKKVELICRRSLGIGGDSVLY--GPILEN 87 Query: 60 VDAFIRIINCD 70 A ++I + Sbjct: 88 GKARMKIFQPE 98 >gi|260554432|ref|ZP_05826653.1| phenazine biosynthesis protein phzF [Acinetobacter baumannii ATCC 19606] gi|260410974|gb|EEX04271.1| phenazine biosynthesis protein phzF [Acinetobacter baumannii ATCC 19606] Length = 289 Score = 42.5 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 87/279 (31%), Gaps = 29/279 (10%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72 Query: 75 QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G+ ++ + K + G++ N IS ++ +P + Sbjct: 73 PFAGHPTIGTAYALLEAGLVKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132 Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 ++ + + V+ N A+ + DL S + Sbjct: 133 LQTEKLAEILKCKINTQWNAALVDVGARWVVLQAVNAKAVLASQPDLNALKQFSLDMKVT 192 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 ++ + + + S + G+ + AS + + V + Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVYEDPVCGSGNGSVASFIRYHGILPAQNDVVL 251 Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G G L +E H + + + G A +G + + Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289 >gi|68473711|ref|XP_719180.1| hypothetical protein CaO19.5620 [Candida albicans SC5314] gi|46440986|gb|EAL00287.1| hypothetical protein CaO19.5620 [Candida albicans SC5314] Length = 309 Score = 42.5 bits (98), Expect = 0.072, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 71/270 (26%), Gaps = 47/270 (17%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF---TFETIRGILV 107 I + + D IRI G+E+ G+ L K K G + Sbjct: 48 FILTPKSSIADYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKPNDNGQIIQECGAGL 107 Query: 108 AKENRDGSISVDMGEPILDWKLIPLAR----------SFDKMDRDRFHIGPVNHLFLRNP 157 K + + + + + + +P D + + P Sbjct: 108 VKISVEKTPNNNNNNNNNNSNELPFLLSFELPYFKFHEIDDKVIEELQHSWNGTNIIGKP 167 Query: 158 FVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE- 216 ++ G A+F + DL + + + + + + + + Sbjct: 168 VLIDAGPKWAVFQLGSGKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNI 227 Query: 217 ---RGVGLTAACGSAACASVVAS--------------GCLHKT---NRAVSVKM-----L 251 GV ACGS + A K + + VK+ Sbjct: 228 APAVGVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLSTK 287 Query: 252 GGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G L I G A +EG I Sbjct: 288 NGDLSIHVG--------GHAITCFEGTYSI 309 >gi|253584228|ref|ZP_04861426.1| phenazine biosynthesis protein [Fusobacterium varium ATCC 27725] gi|251834800|gb|EES63363.1| phenazine biosynthesis protein [Fusobacterium varium ATCC 27725] Length = 301 Score = 42.5 bits (98), Expect = 0.076, Method: Composition-based stats. Identities = 29/256 (11%), Positives = 62/256 (24%), Gaps = 30/256 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILV 107 I D +R EV CG+ + K +T GIL Sbjct: 51 FIFSSDSQEYDVHVRFFTPLK-EVPICGHATIAAHYVIALENNLKEKTCIRQKTGAGILP 109 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGN 164 + G+ ++ + + D R N L P + Sbjct: 110 VEIEPLGN----SYNIVMTQGKVEFGNIIEGNDLGRLVSALGIDNNDLITEAPVQIVSTG 165 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------G 218 + D + + N D+ R G Sbjct: 166 HSKVMIGIKDYQQLHNLTPDMRELNNLSEKINCNGYFVFTFDSNEADILIKGRMFAPAIG 225 Query: 219 VGLTAACGS--AACASVVASGCLHKTNRAVSVKMLGG---------GLLIEWHDNNHVFM 267 + G+ + + L + + + G + + + V + Sbjct: 226 IEEDPVTGNANGPVGAYIVKYKLAEFDDNLKFSAKQGMSIDREGKINVNVSIENGEPVKV 285 Query: 268 --TGEAKKEWEGKLDI 281 +G A ++ ++++ Sbjct: 286 QVSGTATVVFKTEIEL 301 >gi|134101372|ref|YP_001107033.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora erythraea NRRL 2338] gi|291009568|ref|ZP_06567541.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora erythraea NRRL 2338] gi|133913995|emb|CAM04108.1| phenazine biosynthesis PhzC/PhzF protein [Saccharopolyspora erythraea NRRL 2338] Length = 236 Score = 42.5 bits (98), Expect = 0.077, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 58/242 (23%), Gaps = 23/242 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVA 108 + D +RI DG E+ G+ R+ G + Sbjct: 7 FVLPPTTPEADYRLRIFTPDG-ELPFAGHPTLGSAHAWLENGGTPRRDDRVVQECGAGLV 65 Query: 109 KENRDGSISVDMGEPIL---DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGN 164 + +R + P + + L R + + + V + Sbjct: 66 EVHRGEGVLSFAAPPTIRDGALEQEFLDEVVTAFGISRDQVLDHQWVDNGPGWAVVRLAT 125 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 + +E DL A G + A L GV Sbjct: 126 AQEVLALEPDLSRIPTAMVGAVGAYPEGSPFEFELRTFAP-----------GVGVAEDPV 174 Query: 225 CGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 CGS + V G + I + V++ G G + Sbjct: 175 CGSMNASVGQWLTRTGAAPARYRVSQGARLGRAGDITITADQDGAVWVGGATATRIRGTI 234 Query: 280 DI 281 ++ Sbjct: 235 NL 236 >gi|255635872|gb|ACU18283.1| unknown [Glycine max] Length = 197 Score = 42.5 bits (98), Expect = 0.079, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 218 GVGLTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWHD-NNHVFMTGEAKKE 274 GV CG A CA S L K + GG L + + N V + G+A K Sbjct: 131 GVNEDPVCGGAHCALAPYWSKKLGKCDFKAYQASARGGVLNVHLDEQNQRVLLRGKAVKV 190 Query: 275 WEG 277 EG Sbjct: 191 MEG 193 >gi|7271069|emb|CAB77656.1| hypothetical protein [Candida albicans] Length = 302 Score = 42.5 bits (98), Expect = 0.080, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 69/260 (26%), Gaps = 34/260 (13%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I + + IRI G+E+ G+ L K K G ++ + Sbjct: 48 FILTPKSSIAXYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKP----NDNGQIIQEC 103 Query: 111 NRDGSISVDMGEPILDWKLIPLAR----------SFDKMDRDRFHIGPVNHLFLRNPFVV 160 P + +P D + + P ++ Sbjct: 104 GAGLVKISVEKTPNNNSNELPFLLSFELPYFKFHEIDDKVIEELQHSWNGTNIIGKPVLI 163 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE---- 216 G A+F + DL + + + + + + + + Sbjct: 164 DAGPKWAVFQLGSGKEVLDLNXDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPA 223 Query: 217 RGVGLTAACGSAACASVVAS--------------GCLHK-TNRAVSVKMLGGGLLIEWHD 261 GV ACGS + A K R +++ L + + Sbjct: 224 VGVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLTTK-NG 282 Query: 262 NNHVFMTGEAKKEWEGKLDI 281 + + + G A +EG I Sbjct: 283 DLSIHVGGHAITCFEGTYSI 302 >gi|169632971|ref|YP_001706707.1| hypothetical protein ABSDF1228 [Acinetobacter baumannii SDF] gi|169151763|emb|CAP00576.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 289 Score = 42.5 bits (98), Expect = 0.081, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 29/279 (10%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPAIDSQADYQVRIFTP-QSEL 72 Query: 75 QSCGN----GMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLI 130 G+ ++ + K + G++ N IS ++ +P + Sbjct: 73 PFAGHPTIGTAYALLEAGLVKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDA 132 Query: 131 PLARSFDKMDRDRF--HIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 + ++ + + V+ N A+ + DL S + Sbjct: 133 LQTQKLAEILKCKINTQWNAALVDVGARWVVLQAVNAKAVLASQPDLNALKQFSLEMKVT 192 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSV 248 ++ + + + S + G+ + AS + + V + Sbjct: 193 GSTIYGFYEESNEQKRIEVRSFA-PAYGVNEDPVCGSGNGSVASFIRYHSILPAQNDVML 251 Query: 249 KMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G G L +E H + + + G A +G + + Sbjct: 252 SSQGQALGREGQLQLELHQD-KILVGGAAVTCIDGTIKL 289 >gi|226306081|ref|YP_002766041.1| phenazine biosynthesis protein [Rhodococcus erythropolis PR4] gi|226185198|dbj|BAH33302.1| putative phenazine biosynthesis protein [Rhodococcus erythropolis PR4] Length = 289 Score = 42.5 bits (98), Expect = 0.082, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 15/228 (6%) Query: 63 FIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122 IR + EV CG+ LT R +FTFET G + D Sbjct: 65 RIRYFSPIA-EVPFCGHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGRSTATF 123 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDLYHYDLA 181 ++ + P+ + + + GN H + + + Sbjct: 124 ISVEPSVSPIDHAVLTALLGLIGVDSSALDARYPAMLSYAGNTHPIVVLRDQSTFDEFTF 183 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK 241 + ++I + + R + + + A+ Sbjct: 184 DPVAMRTLMDAQGWAGTVTILHPLDDNTFEARNLFPVGNIVEDPATGSAAASTGGYLRKL 243 Query: 242 ----TNRAVSVKMLGGG-------LLIEWHDNNHVFMTGEAKKEWEGK 278 T R +++ G L ++ + + +TG A +G+ Sbjct: 244 EPAATPRRITIHQ--GRHVGRPSVLEVDIPVDGGISVTGTAVPVVDGQ 289 >gi|323438768|gb|EGA96507.1| hypothetical protein SAO11_2378 [Staphylococcus aureus O11] gi|323441648|gb|EGA99295.1| hypothetical protein SAO46_2424 [Staphylococcus aureus O46] Length = 257 Score = 42.1 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 30/259 (11%), Positives = 68/259 (26%), Gaps = 24/259 (9%) Query: 32 SDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 + N L + +Q+ I Q D D + + S + CGN + L Sbjct: 15 ASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVM-----SGNEFCGNATMSYIHHLQE 69 Query: 91 RMKRKSFTFETI-RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K F+ G + + +++P + I Sbjct: 70 SHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYE 129 Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 ++ P + ++ + + + Sbjct: 130 TYVHYVIPVKQVTTEIQH-----------LVETYVREQQWNHKYKTVGMMLFDEQRQFLQ 178 Query: 210 LDLRTWE-RGVGLTAACGSAACASVV-ASGCLHKTNRAVSVKMLGGGLLIEWHD----NN 263 + E + + +CGS + + + + + +V GG +L+ Sbjct: 179 PLIYIPEIQSLIWENSCGSGTASIGIFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGY 238 Query: 264 HVFMTGEAKKEWEGKLDIK 282 + G+ GK I+ Sbjct: 239 QTSIKGQVTTVATGKAYIE 257 >gi|196014378|ref|XP_002117048.1| hypothetical protein TRIADDRAFT_61084 [Trichoplax adhaerens] gi|190580270|gb|EDV20354.1| hypothetical protein TRIADDRAFT_61084 [Trichoplax adhaerens] Length = 297 Score = 42.1 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 40/289 (13%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCG 78 +V D DN+T + ++ + NT +L D +R +E+ CG Sbjct: 24 VVFDA----DNLTDKDMKNIAREMNTSTTGYVL----TSQRADFRLRYFTPSDAEITFCG 75 Query: 79 NGMRCVVRFLTSR-------MKRKSFTFETIRGILVAKEN-RDGSISVDMGEPILDWKLI 130 + + + K + E G+ + + + P ++ + Sbjct: 76 HVTLATLAMIAREKRFGADQGIVKQYNIEINAGLFKGEIDWSGNEPIISFFPPPINLDPV 135 Query: 131 PLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 P + ++ + P ++ N ++F L L Sbjct: 136 PF----NHAQLAEALAINLDIIDQSKPILIERTNR-YVYFAIKSLQE--LKELNVNQETA 188 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWER-------GVGLTAACGSAACASVVASGCLHKTN 243 ++E N+ + ++ +D G+ GS+ Sbjct: 189 KAYAEQHNIILYCASTPHGVDENNHAHSRVFAPVGIAEDPVTGSSQGPLTAYMVQNGMVP 248 Query: 244 RAV-SVKMLGGG-------LLIEWHDNN--HVFMTGEAKKEWEGKLDIK 282 +++ V G + + V ++G A + + I Sbjct: 249 QSLSKVNTEQGDFVGRPGRATVYILGRDPIEVKVSGPAFHVFSADMQIP 297 >gi|238883037|gb|EEQ46675.1| conserved hypothetical protein [Candida albicans WO-1] Length = 305 Score = 42.1 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 29/259 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF-----TFETIRG- 104 I + + D IRI G+E+ G+ L K K E G Sbjct: 48 FILTPKSSIADYSIRIFTSGGNELPFAGHPTLGTAFALLEDGKIKPNDNGQIIQECGAGL 107 Query: 105 -ILVAKENRDGSISVDMGEPILDWKLIPLAR--SFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + ++ + + + P L +P + D + + P ++ Sbjct: 108 VKISVEKTPNNNNNNSNELPFLLSFQLPYFKFHEIDDKVIEELQHSWNGTNIIGKPVLID 167 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE----R 217 G A+F + DL + + + + + + + + Sbjct: 168 AGPKWAVFQLGSGKEVLDLNVDLAQIERLSLENGWTGIGVFGKHNENGDSVELRNIAPAV 227 Query: 218 GVGLTAACGSAACASVVAS--------------GCLHK-TNRAVSVKMLGGGLLIEWHDN 262 GV ACGS + A K R +++ L + + + Sbjct: 228 GVAEDPACGSGSGAIGAYLANHVFNEKEKFTIDISQGKPIERDAKIQVKVNRLTTK-NGD 286 Query: 263 NHVFMTGEAKKEWEGKLDI 281 + + G A +EG I Sbjct: 287 LSIHVGGHAITCFEGTYSI 305 >gi|282899896|ref|ZP_06307857.1| Phenazine biosynthesis PhzC/PhzF protein [Cylindrospermopsis raciborskii CS-505] gi|281195166|gb|EFA70102.1| Phenazine biosynthesis PhzC/PhzF protein [Cylindrospermopsis raciborskii CS-505] Length = 267 Score = 42.1 bits (97), Expect = 0.099, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 34/238 (14%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV 107 + D +R EV CG+ L S ++ F T G+L+ Sbjct: 52 FLLPENDG---FNLRWFTPTT-EVPLCGHATLASAHVLWSEGYLSPEQTARFYTKSGLLI 107 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 AK+ D + +PL + + ++V + +P Sbjct: 108 AKKQDDWIELDFPVNHSQIVEPLPLLNEVLGVGYKSVSLN-------SLGYLVELASPQL 160 Query: 168 IFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 + ++ DL L + + + + V+ A ++ + Sbjct: 161 VRQIQPDLPQMRLLPVRNVIVTSTGDLEYDFVSRFFAPGFGIDEDPV------------- 207 Query: 226 GSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 + A +A HK + GG L + + N V ++G+A G+L Sbjct: 208 -TGAAHCCLAPFWRHKLQKDTFLAYQASQRGGILKVTYSGGNRVLLSGQAITIIRGEL 264 >gi|197100731|ref|NP_001124957.1| phenazine biosynthesis-like domain-containing protein [Pongo abelii] gi|75042410|sp|Q5RDZ1|PBLD_PONAB RecName: Full=Phenazine biosynthesis-like domain-containing protein gi|55726496|emb|CAH90016.1| hypothetical protein [Pongo abelii] Length = 288 Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 63/226 (27%), Gaps = 8/226 (3%) Query: 62 AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +R SEV CG V F + TF T+ G L A+ DG I Sbjct: 65 FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMTSMLTFVTLSGELRARRAEDGIILDF 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF--VVSMGNPHAIFFVEDDLYH 177 P + + R + + + + ++ + + Sbjct: 124 PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTRKLLIRLSDVYDRSFLENLKVNTEN 183 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 + + +G + S W V GSA A S S Sbjct: 184 LLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VAVAEDPVTGSAHAVLSSYWS 242 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L K GG L I + V +TG A EG L + Sbjct: 243 QHLGKKEMHAFQCSRRGGELGISLRPDGRVDITGSAAVVLEGTLTV 288 >gi|321459854|gb|EFX70903.1| hypothetical protein DAPPUDRAFT_217034 [Daphnia pulex] Length = 288 Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 86/270 (31%), Gaps = 25/270 (9%) Query: 27 HDNITSDAINALSTDDNTHFDQIMLIHDFQ--DASVDAFIRIINCDGSEVQSCGNGMRCV 84 +++ + ++ + N + I + + + S +R EV CG+ Sbjct: 30 ENDLPENLKRKIAAEMNLSETAFVTIENGETFEKSSKFALRWFTP-THEVDLCGHATLAT 88 Query: 85 VRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF 144 + ++ K E + K ++ S+ + P+ ++ + Sbjct: 89 AAIIFHKLGNKEKAIEFNTLSGILKAIQENDSSITLDFPLNPSS------PYEAQNLKDI 142 Query: 145 HIGPVNHLFLRNPFVVSMGNPHAIF----FVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 N+ +++ S + + DL + + L + +GV ++ Sbjct: 143 IRVVANNFEIQDVQHCSTTQKLLLRLADKYKRKDLEDLNPLTQELLTCESSGVVKGVIVT 202 Query: 201 IARVTSLESLDLRTWER---GVGLTAACGSAACASVVASGCLHKTNRAVSVKML-----G 252 + + + G+ CGS A V + K + G Sbjct: 203 LQGNENEGYDFYSRYFAPWVGIPEDPVCGS---AHTVLAAYWEKVYNKDQFRARQCSKRG 259 Query: 253 GGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 G L I+ V +TG+ EGK+ IK Sbjct: 260 GDLNIKII-GQRVKLTGQVAHVLEGKIRIK 288 >gi|302752339|gb|ADL66516.1| diaminopimelate epimerase [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 257 Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 67/259 (25%), Gaps = 24/259 (9%) Query: 32 SDAINALSTDDNTHFDQIMLIHDFQ-DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS 90 + N L + +Q+ I Q D D + + S + CGN + L Sbjct: 15 ASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVM-----SGNEFCGNATMSYIHHLQE 69 Query: 91 RMKRKSFTFETI-RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K F+ G + + +++P + I Sbjct: 70 SHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYE 129 Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 ++ P + +F + + Sbjct: 130 TYVHYVIPVKQVTTEIQH-----------LVEAFVREQQWSHKYKTVGMMLFDEQRQFLQ 178 Query: 210 LDLRTWE-RGVGLTAACGSA-ACASVVASGCLHKTNRAVSVKMLGGGLLIEWHD----NN 263 + E + + +CGS A V + + + +V GG +L+ Sbjct: 179 PLIYIPEIQSLIWENSCGSGTASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGY 238 Query: 264 HVFMTGEAKKEWEGKLDIK 282 + G+ GK I+ Sbjct: 239 QTSIKGQVTTVATGKAYIE 257 >gi|15603368|ref|NP_246442.1| hypothetical protein PM1503 [Pasteurella multocida subsp. multocida str. Pm70] gi|18202816|sp|Q9CKV2|Y1503_PASMU RecName: Full=Uncharacterized isomerase PM1503 gi|12721889|gb|AAK03587.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 289 Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 72/270 (26%), Gaps = 26/270 (9%) Query: 26 CHDNITSDAINALSTDDNTHFDQI---MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 D +T + ++ N + + +H ++S +RI D + + Sbjct: 28 QADGLTDQQMQLIARQFN-----LSETVFVHQTTESSAVRKLRIFTPDYELPFAGHPTIG 82 Query: 83 CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142 +++ +T G++ ++ D Sbjct: 83 AAFVLHQQLNLPETYLLQTQAGLVKLFHEAKQICFGLQNHIDVEV--------IDDNLPQ 134 Query: 143 RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIA 202 + ++ + ++ G+ + + L L + + + L Sbjct: 135 YTQLLGLSESDIAQIAWINTGSRQLLIQL-TSLNALKTCQIHPALFQQIVKQSALYLWFV 193 Query: 203 RVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-------L 255 V GSAA T + G L Sbjct: 194 EQNQANVRLFFGSNGAVVEDPGTGSAAANLGGLCLKNGLTPLNWRIYQ--GDEIQRPNRL 251 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLDIKTGK 285 ++ ++ +++ G+ G+L + +G+ Sbjct: 252 TLQVDESETIYVGGKVIAVGCGELFVPSGE 281 >gi|229491382|ref|ZP_04385206.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus erythropolis SK121] gi|229321667|gb|EEN87464.1| phenazine biosynthesis protein PhzF family protein [Rhodococcus erythropolis SK121] Length = 329 Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 82/273 (30%), Gaps = 21/273 (7%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV-DAFIRIINCDGSEVQSC 77 +V+D RG + + +++ + + LI + + IR + EV C Sbjct: 65 VVLDARG----LDDSELQSVAAEIGY-AETAFLIEPALGGNPRHSRIRYFSPIA-EVPFC 118 Query: 78 GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFD 137 G+ LT R +FTFET G + D + ++ + P+ + Sbjct: 119 GHATIATAIALTERDGDGTFTFETPIGPVSIDTATDEDGTSTATFTSVEPSVSPIDHAVL 178 Query: 138 KMDRDRFHIGPVNHLFLRNPFVVSMGNPH-AIFFVEDDLYHYDLASFGNLLAKHPMFSEG 196 + + GN H + + + + Sbjct: 179 TALLGLIGVDSSALDARYPAMLSYAGNTHPIVVLRDQSTFDEFTFDPSAMRTLMDAQGWA 238 Query: 197 VNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK----TNRAVSVKMLG 252 ++I + + R + + + A+ T R +++ Sbjct: 239 GTVTILHPLDDNTFEARNLFPVGNIVEDPATGSAAASTGGYLRKLEPAATPRRITIHQ-- 296 Query: 253 GG-------LLIEWHDNNHVFMTGEAKKEWEGK 278 G L +E + + +TG A +G+ Sbjct: 297 GRHVGRPSVLAVEIPVDGGISVTGTAVPVVDGQ 329 >gi|301172750|ref|NP_002449.2| mucin-5B precursor [Homo sapiens] gi|308153579|sp|Q9HC84|MUC5B_HUMAN RecName: Full=Mucin-5B; Short=MUC-5B; AltName: Full=Cervical mucin; AltName: Full=High molecular weight salivary mucin MG1; AltName: Full=Mucin-5 subtype B, tracheobronchial; AltName: Full=Sublingual gland mucin; Flags: Precursor Length = 5762 Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 40/199 (20%), Gaps = 23/199 (11%) Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 C + S +T A+ D + P I + Sbjct: 320 RCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGC 379 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 H G S + DL Sbjct: 380 LPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 423 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248 ++ S L + C ++ + T+ V++ Sbjct: 424 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTL 483 Query: 249 KMLGGGLLIEWHDNNHVFM 267 + GG I + VF+ Sbjct: 484 SLDGGDTAIRVQADGGVFL 502 >gi|114052683|ref|NP_001039351.1| phenazine biosynthesis-like domain-containing protein [Bos taurus] gi|110279047|sp|Q2HJF4|PBLD_BOVIN RecName: Full=Phenazine biosynthesis-like domain-containing protein gi|88682907|gb|AAI05466.1| Phenazine biosynthesis-like protein domain containing [Bos taurus] gi|296472115|gb|DAA14230.1| phenazine biosynthesis-like domain-containing protein [Bos taurus] Length = 288 Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 63/224 (28%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +R +EV CG V F + + TF T+ G L A++ DG + Sbjct: 65 FGLRWFTP-QNEVPLCGHATLASAAVLFHKIKNVHSTLTFVTMSGELKARKEEDGIVLDL 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P KL + D + V + F + + Sbjct: 124 PLYPAHPQKLHEVEDLIKTAIGDTLVQDVRYSPDTKKLLVRLSDTYNRSFLESLTVNTEN 183 Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 L + +G + S W GV GSA S S Sbjct: 184 LLQVETTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-YGVAEDPVTGSAHTVLSSYWS 242 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K + GG L I + V + G A EG L Sbjct: 243 EQLGKKDLHAFQCSNRGGELTISLRSDGRVDIKGGAALVLEGTL 286 >gi|296086727|emb|CBI32362.3| unnamed protein product [Vitis vinifera] Length = 337 Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 19/231 (8%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 +R EV CG+ FL + K E I G+L A++ G+ S Sbjct: 107 FRLRWFTPTT-EVNLCGHATLAAAHFLFTSSLMKGNMIEFITLSGVLTARKVMQGNKSDA 165 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + + D + ++ + I E D Sbjct: 166 LKYENGEAQEH-FSVELDFPIVPMVEYNSAEVASISK--ALNGASVIDIKKTEGDDLFVV 222 Query: 180 LASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTAACGSAA 229 L S ++ P F + L I + + + R G+ CGSA Sbjct: 223 LPSGKTVVDIEPQFDDIQKLPGRGLIITGLAPPESEFDFFSRFFCPKLGIKEDPVCGSAH 282 Query: 230 CASV-VASGCLHKTNRAVSVKML-GGGLLIEWHD-NNHVFMTGEAKKEWEG 277 C+ S L K + G + I + N V + G+A EG Sbjct: 283 CSLAPYWSQKLGKCDLLAYAASPRSGRVDIHLDEQNQRVLLRGKAVTVMEG 333 >gi|225436978|ref|XP_002276977.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 303 Score = 41.3 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 19/231 (8%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 +R EV CG+ FL + K E I G+L A++ G+ S Sbjct: 73 FRLRWFTPTT-EVNLCGHATLAAAHFLFTSSLMKGNMIEFITLSGVLTARKVMQGNKSDA 131 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 + + + + D + ++ + I E D Sbjct: 132 LKYENGEAQEH-FSVELDFPIVPMVEYNSAEVASISK--ALNGASVIDIKKTEGDDLFVV 188 Query: 180 LASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVGLTAACGSAA 229 L S ++ P F + L I + + + R G+ CGSA Sbjct: 189 LPSGKTVVDIEPQFDDIQKLPGRGLIITGLAPPESEFDFFSRFFCPKLGIKEDPVCGSAH 248 Query: 230 CASV-VASGCLHKTNRAVSVKML-GGGLLIEWHD-NNHVFMTGEAKKEWEG 277 C+ S L K + G + I + N V + G+A EG Sbjct: 249 CSLAPYWSQKLGKCDLLAYAASPRSGRVDIHLDEQNQRVLLRGKAVTVMEG 299 >gi|239626193|ref|ZP_04669224.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520423|gb|EEQ60289.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 284 Score = 41.3 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 52/193 (26%), Gaps = 14/193 (7%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112 + D + G EV CG+ + + +T ET GIL Sbjct: 51 SESGRADLKLEYFTPTG-EVPLCGHATVGTFVVLRHLHMLDKPCYTIETKSGILRVTAGE 109 Query: 113 DGSISVDMGEPILD--WKLIPLARSF--DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG I ++ P + L R F D + D L + S + Sbjct: 110 DGLILMEQNAPRFYETLDKVDLQRCFCPDIIADDMPVQIVSTGLKDILVPISSPAALGDM 169 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 ++ + + E L+ L G+ +A G++ Sbjct: 170 IPDFAEVSRLSREKDCVGVHAFSLMKEAGELTAVC---RNFAPLY----GINEESATGTS 222 Query: 229 ACASVVASGCLHK 241 CA Sbjct: 223 NCALACYLYQYGL 235 >gi|163839671|ref|YP_001624076.1| MFS transporter [Renibacterium salmoninarum ATCC 33209] gi|162953147|gb|ABY22662.1| MFS transporter [Renibacterium salmoninarum ATCC 33209] Length = 737 Score = 41.3 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 12/219 (5%) Query: 64 IRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEP 123 IR + V CG+ L R S+ F+T G + + ++ G S+ Sbjct: 519 IRYFSPYAG-VPFCGHATVATAVALAERYGVGSYLFDTKSGEIKLETSQHGD-SITASFT 576 Query: 124 ILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASF 183 ++ K ++ + + + P + GNPH + + +DL Sbjct: 577 SVEPKGTEISAEVLATLLELLGLTAADLRVDYPPRIAYAGNPHPVLVISEDLIFDSFEFD 636 Query: 184 GNLLAKHPMFSEGV-NLSIARVTSLESLDLRTWERGVGLT--AACGSAACASVVASGCLH 240 L+ + +++ R+ + ++ + R +T A GSAA + L Sbjct: 637 PALIRQLMDQQGWPGTITVLRLLNAQTFEARNLFPVGVITEDPATGSAAASVGAYLRALG 696 Query: 241 KTNRAVSVKMLGGG-------LLIEWHDNNHVFMTGEAK 272 V++ G L ++ ++ + +TG A Sbjct: 697 LVQTPTQVQIQQGRHVGRPSILEVDIPEHGGITVTGSAT 735 >gi|257463928|ref|ZP_05628313.1| hypothetical protein FuD12_08764 [Fusobacterium sp. D12] Length = 255 Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 32/259 (12%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 R + ++ L N + +Q+ I + + G E CGN R Sbjct: 23 NRENYAEVS----RYLMEYGNVYCEQVGFIEG----------QHLQMMGGE--FCGNASR 66 Query: 83 CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142 +L + E + + G K + Sbjct: 67 SFAAYLAFQD-------EDFQKEKNYEITCSGYSKTLSVWVRQGEKEHQFLAKIAMPEIL 119 Query: 143 RFHIGP--VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 + + V G H I + + ++ ++ E L Sbjct: 120 SMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEIINVFQEYMEKEEY----EAFGLM 175 Query: 201 IARVTSLESL-DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259 ++ +C A ++ R +++ GG L + Sbjct: 176 FFEKEKYRMTPYVQVKGISGVWEKSCAFGTTALGYYLREKYQMQR-ANIQQPGGYLEVSL 234 Query: 260 HDNNHVFMTGEAKKEWEGK 278 + VF+ G K EG+ Sbjct: 235 -EGEQVFIDGLVKIVAEGE 252 >gi|308176863|ref|YP_003916269.1| hypothetical protein AARI_10880 [Arthrobacter arilaitensis Re117] gi|307744326|emb|CBT75298.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117] Length = 265 Score = 40.9 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 15/219 (6%) Query: 37 ALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS 96 L ++ H +Q+ I + + + + C N + + + + Sbjct: 28 RLLRAEHVHAEQVGFILPPRKPQAHTRLHMAGDE-----FCANATLSLAAWHAA-TRPGP 81 Query: 97 FTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI-GPVNHLFLR 155 E + A+++ + + IP +S + G V + Sbjct: 82 DRAELLIETSGARQSLHCRVEPSEAGYRCELS-IPWPQSIEPYKVPGIERAGLVRYPGAV 140 Query: 156 NPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW 215 + G+ + L A + ++ +A + S+ +L W Sbjct: 141 HLVAEGDGSDPLLRERAQQLAVELGAREAVCVVGIMLYDRHRQ-ELAPLVSVPALGSMIW 199 Query: 216 ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG 254 E +CGS A + T SVK GG Sbjct: 200 EG------SCGSGTAAVGAYLAAVTGTPINASVKQPGGT 232 >gi|55378542|ref|YP_136392.1| diaminopimelate epimerase [Haloarcula marismortui ATCC 43049] gi|55231267|gb|AAV46686.1| diaminopimelate epimerase [Haloarcula marismortui ATCC 43049] Length = 303 Score = 40.9 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 74/249 (29%), Gaps = 20/249 (8%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS-RMKRKSFTFETIRGILVAK 109 + +DA D +R + Q+ + + +T T RG + + Sbjct: 50 FVLPAEDA--DRRLRCFSPTKELAQAETAAVAAHAALYERGEIDDSEWTVATARGDVAVE 107 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRD--RFHIGPVNHLFLRNPFVVSM---GN 164 ++G + V+ G + IP + D + + + + S Sbjct: 108 TKQNGMVWVEQGRADITEVDIPYSDVADALGLNAATLKDVGADLPLVTAGVGESWLMVPV 167 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE---RGVGL 221 + + + S + + ++ + A T + R + R Sbjct: 168 NYFEHLSGLTMDVAAVDSLCDRVDAAGVYPFTFDTVGADATRRSTFHGRAFRVGSRAEEP 227 Query: 222 TAACGSAACASVVASGCLHKTNRAVS-VKMLGGGL-----LIEWHDNN-HVFMTGEAKKE 274 A S ACA+ V + + + GG + + V++ G A Sbjct: 228 VTATASGACAAFV--RRYGALDDTIEQIIAEGGHFRDRPGTVSVDTDGTEVWVGGRAVTA 285 Query: 275 WEGKLDIKT 283 +G + + Sbjct: 286 LDGTVTVPA 294 >gi|229161960|ref|ZP_04289937.1| Phenazine biosynthesis protein phzF [Bacillus cereus R309803] gi|228621567|gb|EEK78416.1| Phenazine biosynthesis protein phzF [Bacillus cereus R309803] Length = 298 Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 48/198 (24%), Gaps = 15/198 (7%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D I EV CG+ L K + V Sbjct: 64 SESEVADYKIEYFTP-KEEVDLCGHATIGSFAILMHLNKLFKSRYTIETNSGVLTITIKD 122 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + +I D D + +VS G + ++ + Sbjct: 123 DIIFMEQNEPIFYDVISPNEFIDCFDIEDIEN-------TYPIQIVSTGLKDILIPIKSE 175 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSAAC 230 L + K S+ N+ + + + AA G++ Sbjct: 176 ---TQLHTLQPNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLYDINEEAATGTSNS 232 Query: 231 ASVVASGCLHKTNRAVSV 248 A H + V V Sbjct: 233 ALACYLYEQHYLQKEVYV 250 >gi|171317643|ref|ZP_02906828.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria MEX-5] gi|171097171|gb|EDT42021.1| phenazine biosynthesis protein PhzF family [Burkholderia ambifaria MEX-5] Length = 293 Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 59/241 (24%), Gaps = 15/241 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D D +RI G E+ G+ R G+ Sbjct: 52 FVCTPTDPQADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGVLIQQCGVGRV 110 Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + P D P+ + + D P VV + + Sbjct: 111 ELREQADGWAFAAPPARFTPLDRADYPVLAAALRSDAIDPDAEPCAVDNGAPWLVVRLTS 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 A + D + ++ + A + G G A Sbjct: 171 ADACIGLAPDPAALAALTHRYGAHGLAAYAPHPDDGPATF--EIRCLMTGDGFGTGEDPA 228 Query: 225 CGSAACASVVASGCLHK------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 GSA A + T R + G + + + D+ +++ G +G Sbjct: 229 TGSANAALAELLSRQQRRPGTSYTARQGTAIGRDGRIAVRYGDDGTIWIGGHVVTVVDGT 288 Query: 279 L 279 Sbjct: 289 F 289 >gi|269960320|ref|ZP_06174694.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834931|gb|EEZ89016.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 299 Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 22/228 (9%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDGS-- 115 D +R EV CG+G + L + K + F+T+ G L AK N Sbjct: 87 DMRLRWFTP-KVEVALCGHGTLATAQILKEQGFAKVGDTIAFQTLSGELHAKVNESTIEL 145 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 + + I L + + + N + +E + Sbjct: 146 DFPATQFEMDVEQDIALLAGLGLKAEQVVSYAQFDSKG-----FIEVDNEKTVLELEPNF 200 Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACA-SVV 234 L + S +L + GV GSA CA + Sbjct: 201 DA--LKNIQGRGVVVTAQSNSPDLDFISRYFAPWV-------GVNEDPVTGSAHCALTQF 251 Query: 235 ASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L + RA GG L E +N + + G AK GKL + Sbjct: 252 WSQKLGQNQFRAYQASARGGHLQTELLENGRIKLIGSAKTVISGKLKV 299 >gi|51491893|ref|NP_612539.2| phenazine biosynthesis-like domain-containing protein [Rattus norvegicus] gi|81884389|sp|Q68G31|PBLD_RAT RecName: Full=Phenazine biosynthesis-like domain-containing protein gi|51261154|gb|AAH78735.1| Phenazine biosynthesis-like protein domain containing [Rattus norvegicus] gi|149043908|gb|EDL97359.1| rCG60889, isoform CRA_a [Rattus norvegicus] Length = 288 Score = 40.5 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 64/224 (28%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSISVD 119 +R SEV CG+ L ++K + TF T+ G L A+ DG + Sbjct: 65 FGLRWFTP-VSEVPLCGHATMASAAVLFHKIKNVNSTLTFVTLSGELKARRAEDGIVLDF 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177 P + D R V + + ++ + Sbjct: 124 PLYPTFPQDFHEVKDLIKAAIGDTTVQDIQYSPDTRKLLVRLSDSYDRSFLESLKVNTEP 183 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 + + +G + S W GV GSA S S Sbjct: 184 LPGIEKTGKVKGLILTVKGESGGQTTPYDFYSRYFAPW-VGVPEDPVTGSAHTVLSSYWS 242 Query: 237 GCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K RA GG L I + V M G A EG L Sbjct: 243 QQLGKKEMRAFQCSCRGGELDISLRPDGRVDMKGGAAVVLEGML 286 >gi|150018319|ref|YP_001310573.1| hypothetical protein Cbei_3494 [Clostridium beijerinckii NCIMB 8052] gi|149904784|gb|ABR35617.1| phenazine biosynthesis protein PhzF family [Clostridium beijerinckii NCIMB 8052] Length = 303 Score = 40.5 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 67/253 (26%), Gaps = 28/253 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I + D +R SEV CG+ + ++ G + Sbjct: 51 FILSSNSSEYDVQVRFFTP-TSEVPICGHATIAAHYVRAIENELETSRIYHKTGAGILPV 109 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDR----FHIGPVNHLFLRNPFVVSMGNPH 166 + + + I+ I D ++++ I + L +VS G Sbjct: 110 DIIK--ENNDYKIIMTQGKIEFREIIDGINKEELLKVLKIKESDLLDDYKIQIVSTG-HS 166 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVG 220 + + + N T + D+ R G+ Sbjct: 167 KVMIGIKSIETLNTLQPDYNALSKLSEVIKCNGYYIFTTDSKESDILIHGRMFAPSIGIN 226 Query: 221 LTAACGSAACASVVASGCLHKTNRAVS-----------VKMLG-GGLLIEWHDNNHVF-- 266 G+A V + S + G + ++ DN V Sbjct: 227 EDPVTGNANGPLGVYLVHHNLVKHNNSLFRFKAKQGEAINRPGIIEVEVKIEDNEPVEAK 286 Query: 267 MTGEAKKEWEGKL 279 ++G A ++ +L Sbjct: 287 VSGNAVIIFKSEL 299 >gi|317061454|ref|ZP_07925939.1| diaminopimelate epimerase [Fusobacterium sp. D12] gi|313687130|gb|EFS23965.1| diaminopimelate epimerase [Fusobacterium sp. D12] Length = 269 Score = 40.5 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 66/259 (25%), Gaps = 32/259 (12%) Query: 23 MRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMR 82 R + ++ L N + +Q+ I + + G E CGN R Sbjct: 37 NRENYAEVS----RYLMEYGNVYCEQVGFIEG----------QHLQMMGGE--FCGNASR 80 Query: 83 CVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRD 142 +L + E + + G K + Sbjct: 81 SFAAYLAFQD-------EDFQKEKNYEITCSGYSKTLSVWVRQGEKEHQFLAKIAMPEIL 133 Query: 143 RFHIGP--VNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 + + V G H I + + ++ ++ E L Sbjct: 134 SMKKEDIIMGERSISVYRVCLEGITHFILEEKPKIEIINVFQEYMEKEEY----EAFGLM 189 Query: 201 IARVTSLESL-DLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEW 259 ++ +C A ++ R +++ GG L + Sbjct: 190 FFEKEKYRMTPYVQVKGISGVWEKSCAFGTTALGYYLREKYQMQR-ANIQQPGGYLEVSL 248 Query: 260 HDNNHVFMTGEAKKEWEGK 278 + VF+ G K EG+ Sbjct: 249 -EGEQVFIDGLVKIVAEGE 266 >gi|256061434|ref|ZP_05451578.1| PhzF family phenazine biosynthesis protein [Brucella neotomae 5K33] gi|261325442|ref|ZP_05964639.1| phenazine biosynthesis protein PhzF [Brucella neotomae 5K33] gi|261301422|gb|EEY04919.1| phenazine biosynthesis protein PhzF [Brucella neotomae 5K33] Length = 308 Score = 40.5 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 81/292 (27%), Gaps = 41/292 (14%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQI---MLIHDFQDASVDAFIRIINCDGSEVQ 75 +V D + +T + A++ + N + + IH + + +A +RI Sbjct: 29 IVHDC----EGLTDACMQAIAREFN-----LSETVFIHAPANPAHEASVRIFTPAYELPF 79 Query: 76 SC----GNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIP 131 + G + R T + T E GI+ + + + + + Sbjct: 80 AGHPTVGAAVSLARRQKTGDETDRLVTLEEKVGIVRCGVILGENSAFAEFDLPRLPEQVD 139 Query: 132 LARSFDKM-------DRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFG 184 + ++ + V ++ + + + I + + ++ Sbjct: 140 VKIEREEAAAAIGLGTHEIGFENHVPGVWSAGTPCLLVPVHNLIAAAKVSIDPVYVSESL 199 Query: 185 NLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK--- 241 + P+ S + V A GSA A K Sbjct: 200 PHVGGRPLPIYVYCRETILFDSHFHARMFVIGANVYEDPATGSAVAAFAGMIQQNDKPVD 259 Query: 242 ------------TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 R +++ L + + G A K EG+L + Sbjct: 260 GSSQWWIEQGMEMGRPSRIRL---ELDVSKQKLVSARIGGPAVKIAEGRLFV 308 >gi|260789391|ref|XP_002589730.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae] gi|229274912|gb|EEN45741.1| hypothetical protein BRAFLDRAFT_239453 [Branchiostoma floridae] Length = 293 Score = 40.5 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 218 GVGLTAACGSA-ACASVVASGCLHKTNRAVSVKML-GGGLLIEWHDNNHVFMTGEAKKEW 275 GV CGSA + + L KT+ V GG L + + V + G+A Sbjct: 228 GVAEDPVCGSAHTVLASYWAKELGKTDFYVRQCSPRGGDLKVWLRGDGRVEVAGKATVVL 287 Query: 276 EGKLDI 281 GK+ I Sbjct: 288 NGKIKI 293 >gi|189053892|dbj|BAG35205.1| unnamed protein product [Homo sapiens] Length = 255 Score = 40.5 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 +R SEV CG+ L ++K + T + G L A+ DG + Sbjct: 32 FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDL 90 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + + + V + F + + Sbjct: 91 PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTEN 150 Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 L N + +G + S W GV GSA A S S Sbjct: 151 LLQVENTGKVKGLILTLKGEPCGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 209 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K GG L I + V + G A EG L Sbjct: 210 RHLGKKEMHAFQCSRRGGELGIFLRPDGRVDIRGGAAVVLEGTL 253 >gi|291301784|ref|YP_003513062.1| phenazine biosynthesis protein PhzF family [Stackebrandtia nassauensis DSM 44728] gi|290571004|gb|ADD43969.1| phenazine biosynthesis protein PhzF family [Stackebrandtia nassauensis DSM 44728] Length = 280 Score = 40.5 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 23/239 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGIL 106 + D D +RI G E++ G+ + E G++ Sbjct: 51 FVLSPNDPEADYRLRIFTP-GLELEFAGHPTLGSAHAWLENGGKPKRAGRIVQECAAGLV 109 Query: 107 VAKENRDG-SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVV-SMGN 164 ++ G S + + + + LA D +R + + + V +G+ Sbjct: 110 ELRQGEGGLSFAAPPRRRVGELEAEHLAAIVDAFGIEREAVVSHQWVDNGPGWAVIRLGS 169 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 + +E D + A G + L S GV Sbjct: 170 AEEVLALEPDFSRFPTAMVGAVGEYPKGSEFAYELRTFAPAS-----------GVFEDPV 218 Query: 225 CGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 CGS + + A V G + I ++ V++ G + G Sbjct: 219 CGSMNASVAQWLTGAGEMPAAYKVSQGARLGRRGEVAIAVEEDGTVWVGGATTTCFRGT 277 >gi|294777153|ref|ZP_06742610.1| conserved domain protein [Bacteroides vulgatus PC510] gi|294449022|gb|EFG17565.1| conserved domain protein [Bacteroides vulgatus PC510] Length = 111 Score = 40.5 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRD 113 + A D + I N DGSEV CGN RC+ +++ ++K+ T ET+ GI V K + + Sbjct: 4 KSAKADFSMHIFNADGSEVMMCGNASRCIGKYVYDNKLTQKKAITQETLSGIKVLKLHTE 63 Query: 114 G 114 Sbjct: 64 N 64 >gi|296220550|ref|XP_002756354.1| PREDICTED: phenazine biosynthesis-like domain-containing protein-like [Callithrix jacchus] Length = 288 Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 +R SEV CG V F + +F T+ G L A+ D I Sbjct: 65 FGLRWFTP-ASEVPLCGHATLASAAVLFYKIKNMNSMLSFVTLSGELKARREEDDIILDL 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDDLYH 177 P + + +N V + + ++ + + Sbjct: 124 PLYPAHPQNFHEVEDLIKTTIGNTLVQDVCYSPDTQNLLVRLSDAYDRSFLENLKVNTEN 183 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 + + +G + S W GV GSA A S S Sbjct: 184 LTQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 242 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K GG L I + V + G A EG L Sbjct: 243 QHLGKKEMHAFQCSRRGGELGISLRPDGRVDIRGGAAIVLEGTL 286 >gi|15896687|ref|NP_350036.1| hypothetical protein CA_C3446 [Clostridium acetobutylicum ATCC 824] gi|18202320|sp|P58293|Y3446_CLOAB RecName: Full=Uncharacterized isomerase CA_C3446 gi|15026537|gb|AAK81376.1|AE007842_4 Predicted epimerase, PhzC/PhzF homolog [Clostridium acetobutylicum ATCC 824] gi|325510851|gb|ADZ22487.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 302 Score = 40.1 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 66/253 (26%), Gaps = 28/253 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I +D DA++R SEV CG+ ++ G + Sbjct: 51 FIFSSKDERYDAWVRFFTP-TSEVPICGHATIAAHYARAIENNLETSRVYHKTGAGILPV 109 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRF----HIGPVNHLFLRNPFVVSMGNPH 166 + D + I+ I D +++ +I + L +VS G Sbjct: 110 DVIKE--NDDYKIIMTQGKIEFGSVIDGEKKEKLLRALNIEKSDLLENYKIQIVSTG-HS 166 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--------G 218 + L + + N + E D+ R Sbjct: 167 KVMIGIKSLKTLNKLQPNYDVLSKLSKIIKCNGYYVFAVTSEDSDILIHGRMFAPAIGIN 226 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAV-SVKMLGGG---------LLIEWHDNNHVF-- 266 + + + L + ++ K G + + V Sbjct: 227 EDPVTGNANGPLGAYLVHHKLACYDNSIFKFKAKQGEAIGRQGIIEVEVRVDKEEPVEVK 286 Query: 267 MTGEAKKEWEGKL 279 ++G A ++ +L Sbjct: 287 ISGNAVVVFKSEL 299 >gi|282897634|ref|ZP_06305634.1| Phenazine biosynthesis PhzC/PhzF protein [Raphidiopsis brookii D9] gi|281197557|gb|EFA72453.1| Phenazine biosynthesis PhzC/PhzF protein [Raphidiopsis brookii D9] Length = 263 Score = 40.1 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 34/233 (14%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILV 107 + D +R EV CG+ L S + F T G+L+ Sbjct: 52 FLLPENDG---FNLRWFTPTT-EVPLCGHATLASAHVLWSEGYLSPEQKARFYTKSGLLI 107 Query: 108 AKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHA 167 AK+ D +++ P+ +++ + + +G + ++V + +P Sbjct: 108 AKKQDD---WIELDFPVNHSQIV----EPPPLLNEVLGVGYKSVSLNSLGYLVELASPQL 160 Query: 168 IFFVEDDLYHYDLA--SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 + ++ D L + + + + ++ A ++ + Sbjct: 161 VRQIQPDFQQMRLLPVKSMIVTSTGDLEYDFISRFFAPGFGIDEDPV------------- 207 Query: 226 GSAACASVVASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKE 274 + A +A +K + GG L + + N VF++G+A Sbjct: 208 -TGAAHCCLAPFWRYKLQKDTFLAYQASQRGGILRVTYSGGNRVFLSGQAITV 259 >gi|296171783|ref|ZP_06852918.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893973|gb|EFG73739.1| diaminopimelate epimerase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 41 Score = 40.1 bits (92), Expect = 0.40, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTH 45 M+ FAK G N LV+ G ++ + + AL Sbjct: 1 MI-FAKGHGTENDFLVLPDAGAALDLGAARVAALCDRRRGVG 41 >gi|229097693|ref|ZP_04228648.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-29] gi|229116701|ref|ZP_04246085.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-3] gi|228666533|gb|EEL21991.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-3] gi|228685638|gb|EEL39561.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-29] Length = 298 Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 39/194 (20%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D I EV CG+ L K + V Sbjct: 64 SESEIADYKIEYFTP-KEEVDLCGHATIGSFTILMHLNKLFKNRYTIETNSGVLTITIKE 122 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + +I D D + + + Sbjct: 123 DIIFMEQNEPIFYDVISPNEFIDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHTMQ 182 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 183 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 236 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 237 YLYKQHYLQKEVYV 250 >gi|77460003|ref|YP_349510.1| diaminopimelate epimerase-like [Pseudomonas fluorescens Pf0-1] gi|77384006|gb|ABA75519.1| putative epimerase [Pseudomonas fluorescens Pf0-1] Length = 330 Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 98/317 (30%), Gaps = 62/317 (19%) Query: 5 MVDFAKMEGIGNKILVIDMR-----------------GCHDNITSDAINALST----DDN 43 M F + GN V+ R ++ AI Sbjct: 1 MTQF--YDARGNIYGVVSPRVLRDAGIDLPTSAAQCASSRQTWSTAAIAQCCDWPDGQRP 58 Query: 44 THF-----DQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSF- 97 D ++ I FQ A + I+N DG+ + GNG+ R L + Sbjct: 59 VGSKSHRSDGLL-IGPFQSAPP-FDLLIVNTDGTLAERSGNGLTIFSRALLEQGLMPEEG 116 Query: 98 ---TFETIRGILV---------AKENRDGSISVDMGEPILDWKLIPLAR----SFDKMDR 141 + A+ +D+G+P + F+ ++ Sbjct: 117 ATLRVHHDKQDSQSPVPTSVKPAQVAGVHGFWLDLGQPGFGPVAVGALGVEPVPFNGVEV 176 Query: 142 DRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL--------------YHYDLASFGNLL 187 +R + V +GNPH + V+D++ ++ Sbjct: 177 NRVRPLAQLDPAWAHSQFVRIGNPHCVTLVQDEVALPSNAQMLEPPLADSLTAIAYAMPT 236 Query: 188 AKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNR-AV 246 GVNL A + + R +ERG G TA+ G++A A A+ + + V Sbjct: 237 GAGQPCPAGVNLQWATRAGDQRIVARVFERGEGPTASSGTSASAVASAAWRVGWVSAGEV 296 Query: 247 SVKMLGGGLLIEWHDNN 263 V M GG I + + Sbjct: 297 QVLMPGGTAPILLEERD 313 >gi|260914715|ref|ZP_05921180.1| phenazine biosynthesis PhzC/PhzF protein [Pasteurella dagmatis ATCC 43325] gi|260631219|gb|EEX49405.1| phenazine biosynthesis PhzC/PhzF protein [Pasteurella dagmatis ATCC 43325] Length = 284 Score = 39.8 bits (91), Expect = 0.49, Method: Composition-based stats. Identities = 27/268 (10%), Positives = 67/268 (25%), Gaps = 26/268 (9%) Query: 26 CHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVV 85 D + + ++ N +++ +H + S +RI D + + Sbjct: 29 QADGLNDLQMQLIARQFNL--SEVVFVHQAEQLSAVKKLRIFTPDYELPFAGHPTIGASF 86 Query: 86 RFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFH 145 + +T G++ + I + I + + Sbjct: 87 VLHRQLGLPDQYVLQTNAGLIEIYHQQKQIIFGLNTDI-----QIQTIKDDPLLYAKLLG 141 Query: 146 IGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVT 205 + P + + V+ G+ + L + + Sbjct: 142 LQPADIAQIAW---VNTGSQQLLIQ----LNSASAIKTCQIDTALFHQLVQQSALYVWFE 194 Query: 206 SLESLDLRTW---ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-------L 255 +R + V GSAA T + G L Sbjct: 195 EHNQAKVRLFFGSNGAVVEDPGTGSAAANLGGLCIKNGLTPLNWKITQ--GDEIQRPNRL 252 Query: 256 LIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 + ++ +++ GE G+ + + Sbjct: 253 TLSVDESETIYVGGEVIAVGNGEFFVPS 280 >gi|23308971|ref|NP_601940.2| epimerase [Corynebacterium glutamicum ATCC 13032] gi|62391581|ref|YP_226983.1| epimerase, PhzC/PhzF-like protein [Corynebacterium glutamicum ATCC 13032] gi|21325517|dbj|BAC00139.1| Predicted epimerase, PhzC/PhzF homolog [Corynebacterium glutamicum ATCC 13032] gi|41326923|emb|CAF20767.1| Predicted epimerase, PhzC/PhzF homolog [Corynebacterium glutamicum ATCC 13032] Length = 280 Score = 39.8 bits (91), Expect = 0.50, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 78/277 (28%), Gaps = 39/277 (14%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 ++ D D+++++ + ++ N + + D +RI G Sbjct: 27 VIADA----DDLSAEQMARIARWTN------LSETTFLLKPTQEGADYRVRIFTPTGELP 76 Query: 75 QSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLAR 134 + + F ++ + + LVA DG S + K PL Sbjct: 77 FAGHPTLGTAHVFRELHGEQGTQLVQECVAGLVAVRAIDGPASGLAFQAPPTLKDGPLDA 136 Query: 135 SFDKMDRD------RFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLA 188 S + F VV + + + +E D + G + A Sbjct: 137 SDLDAACEALGISPDFIRAHQWVDNGPGWAVVELPSAQHVLDLEPDFSAHPTLKLGVIGA 196 Query: 189 KHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTN----- 243 +R + +G+G GS + + Sbjct: 197 YPEGAPHAFE-------------VRAFAQGIGEDPVTGSLNASIAQWLHRDGRAGEGYLA 243 Query: 244 RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 + G + I +++ +++ G ++G + Sbjct: 244 SQGTAIGRAGEIHISI-ESHAIWVGGSVTTIFQGTAE 279 >gi|298248633|ref|ZP_06972438.1| phenazine biosynthesis protein PhzF family [Ktedonobacter racemifer DSM 44963] gi|297551292|gb|EFH85158.1| phenazine biosynthesis protein PhzF family [Ktedonobacter racemifer DSM 44963] Length = 305 Score = 39.8 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 70/283 (24%), Gaps = 33/283 (11%) Query: 26 CHDNITSDAINALSTDDNTHFDQ--IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRC 83 +++ + + ++ + N Q + D +R G EV G+ Sbjct: 29 NAQDLSQETMQRIAREFN----QSETTFLLPPTRQETDWRLRSFTPVGIEVGGAGHNALG 84 Query: 84 VVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL---ARSF 136 +L + K F+ G V I + A SF Sbjct: 85 AWWWLAEAGQLKLSGPRTVFQQEIGEQVLAVEVL--AEKREEGAPWQPTTISMRQTAPSF 142 Query: 137 DKMDRDRFHIGPVNHLFLRNPFV------VSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190 + D + L + FV V + A Sbjct: 143 GAIHTDPAALAAALGLESSDLFVEGLPAQVVSTGATHMMVPVQSREAISRAQPDAKRLYQ 202 Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLT------AACGSAACASVVASGCLHKTNR 244 + S G + R T A G+AA + Sbjct: 203 HLRSVGGQGCYLFSLDTVDPLAAAYTRFFNPTEGIVEDPATGTAAGPLACYLAKYGRIGS 262 Query: 245 AVSVKMLGG-GL----LIEWH-DNNHVFMTGEAKKEWEGKLDI 281 V++ + G L IE + V + G EG L + Sbjct: 263 WVTITIEQGYDLARPSRIEIRLHGDEVSICGSGVTVAEGVLRL 305 >gi|62177133|ref|NP_071412.2| phenazine biosynthesis-like domain-containing protein isoform a [Homo sapiens] gi|17380331|sp|P30039|PBLD_HUMAN RecName: Full=Phenazine biosynthesis-like domain-containing protein; AltName: Full=MAWD-binding protein; AltName: Full=Unknown protein 32 from 2D-page of liver tissue gi|16307296|gb|AAH09738.1| Phenazine biosynthesis-like protein domain containing [Homo sapiens] gi|119574659|gb|EAW54274.1| MAWD binding protein, isoform CRA_b [Homo sapiens] gi|119574660|gb|EAW54275.1| MAWD binding protein, isoform CRA_b [Homo sapiens] gi|119574661|gb|EAW54276.1| MAWD binding protein, isoform CRA_b [Homo sapiens] gi|261860514|dbj|BAI46779.1| phenazine biosynthesis-like protein domain containing protein [synthetic construct] Length = 288 Score = 39.8 bits (91), Expect = 0.54, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 +R SEV CG+ L ++K + T + G L A+ DG + Sbjct: 65 FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDL 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + + + V + F + + Sbjct: 124 PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTEN 183 Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 L N + +G + S W GV GSA A S S Sbjct: 184 LLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 242 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K GG L I + V + G A EG L Sbjct: 243 QHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTL 286 >gi|10800086|dbj|BAB16606.1| MAWD binding protein [Homo sapiens] gi|119574663|gb|EAW54278.1| MAWD binding protein, isoform CRA_d [Homo sapiens] Length = 255 Score = 39.8 bits (91), Expect = 0.54, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 +R SEV CG+ L ++K + T + G L A+ DG + Sbjct: 32 FGLRWFTP-ASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIVLDL 90 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P + + + V + F + + Sbjct: 91 PLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVNTEN 150 Query: 180 LASFGNLLAKH--PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASVVAS 236 L N + +G + S W GV GSA A S S Sbjct: 151 LLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 209 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K GG L I + V + G A EG L Sbjct: 210 QHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTL 253 >gi|284048874|ref|YP_003399213.1| hypothetical protein Acfer_1540 [Acidaminococcus fermentans DSM 20731] gi|283953095|gb|ADB47898.1| conserved hypothetical protein [Acidaminococcus fermentans DSM 20731] Length = 271 Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 32/243 (13%) Query: 48 QIMLIHDFQDASVDAFIRIINCDGSE--VQSCGNGMRCVVRFLTSRMKRKSFTFE-TIRG 104 Q++ +H + + I+ + CGN R K F+ T G Sbjct: 33 QLLTLHPSVEQAGCLSIKEGQPQVEMMGGEFCGNATRSAGACALYFNGEKEGEFQVTCSG 92 Query: 105 ILVAKENRDGSISVDMG------EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF 158 V R + ++ P L K I L+ + ++ Sbjct: 93 CPVPLPVRAKKVRENLYEASVQLPPPLSMKKIRLSYERESVECQE--------------- 137 Query: 159 VVSMGNPHAIFF--VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-LRTW 215 VV G H ++F D++ L E L + +++L+ + + Sbjct: 138 VVFPGITHYVYFTLNVDEVDQDQLFYSLQREISRGEEPEAYGLMLVEMSTLKVIPIVYVS 197 Query: 216 ERGVGL-TAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIE--WHDNNHVFMT--GE 270 G +CGS + A A K + A +++ GG + IE W V +T G Sbjct: 198 ATGTLYHENSCGSGSAAVAAALTQRQKRSLAATLQEPGGRIDIETDWQAEKLVSITIGGP 257 Query: 271 AKK 273 + Sbjct: 258 VRL 260 >gi|284164613|ref|YP_003402892.1| phenazine biosynthesis protein PhzF family [Haloterrigena turkmenica DSM 5511] gi|284014268|gb|ADB60219.1| phenazine biosynthesis protein PhzF family [Haloterrigena turkmenica DSM 5511] Length = 299 Score = 39.4 bits (90), Expect = 0.57, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 62/249 (24%), Gaps = 20/249 (8%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAK 109 + + A D IR EV CG+ L + ++ ET G L + Sbjct: 50 FLRPSETA--DYRIRYFTP-TQEVDLCGHATIGSFAHLRDEGLEAGTYALETNVGELEIE 106 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + DG++ + EP + + R D + D + + + A Sbjct: 107 VDSDGTVWMTQDEPRIREVDVGYDRVADALGVDAAALEGASDDIPLAVSSTGLPFLIAPI 166 Query: 170 FVEDDL---YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 DL A S + GV G Sbjct: 167 TYLSDLGSAEPDMRAIEELTDEVDATGVYCFTFDALGRESTLHGRMFAPGAGVPEDPVTG 226 Query: 227 SAACASVVASGCLHKTNRAV----------SVKMLGGGLLIEWHDNNHVFMTGEAKKEWE 276 +A+ A + V G + V + G + Sbjct: 227 TASGAVGAYLDRFGAFDDDFPEELRLEQGHYVDRPG---QVRVRIGEDVRVGGRGVTVLD 283 Query: 277 GKLDIKTGK 285 G L + + Sbjct: 284 GSLAVPEDE 292 >gi|4263517|gb|AAD15343.1| similar to PHZF, catalyzing the hydroxylation of phenazine-1-carboxylic acid to 2-hydroxy-phenazine-1-carboxylic acid [Arabidopsis thaliana] gi|7269771|emb|CAB77771.1| putative protein [Arabidopsis thaliana] gi|51972158|gb|AAU15183.1| At4g02860 [Arabidopsis thaliana] Length = 294 Score = 39.4 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 17/242 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + +R EV CG+ L S S E + + Sbjct: 55 FLIPITGFQARFSLRWFTPLA-EVDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILT- 112 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +S + K + + + ++ I Sbjct: 113 --AKRVSDTSELSDGEVKGGTFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKA 170 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVG 220 + L S ++ P + + I + R GV Sbjct: 171 TATNNILVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVD 230 Query: 221 LTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 CGSA CA S ++K + G + I + V + G+A EG Sbjct: 231 EDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEG 290 Query: 278 KL 279 + Sbjct: 291 HV 292 >gi|311746863|ref|ZP_07720648.1| phenazine biosynthesis protein PhzF family protein [Algoriphagus sp. PR1] gi|126578549|gb|EAZ82713.1| phenazine biosynthesis protein PhzF family protein [Algoriphagus sp. PR1] Length = 264 Score = 39.4 bits (90), Expect = 0.60, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 64/234 (27%), Gaps = 23/234 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-FTFETIRGILVAK 109 + +D +R E+ CG+ + T + Sbjct: 49 FVEKTKDTGY-FGLRWFTP-TLEIDLCGHATLASSFHMLQSGWATPGDTIHFQTKSGELR 106 Query: 110 ENRDGSISVDMGEPILDWKLIP-LARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 DG LIP D F + LR +++ + + A+ Sbjct: 107 VKSDGEWLEMDFP------LIPTFEEEHPYFKDDFFGEKVIQISQLRKNWIIELEDFEAV 160 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA 228 V DL S ++ S ++ GV G A Sbjct: 161 TRVIPDLPTIAANSEEGIIITAKGKEPFDIYSRFFGPNV----------GVDEDPVTGFA 210 Query: 229 ACASVVASG-CLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 CA + K GG L +E HD+ V + G+A EG +D Sbjct: 211 HCALMDYWYQKTGKFKIKAFQASKRGGVLHLEKHDD-RVILRGQAVHVLEGTID 263 >gi|37526184|ref|NP_929528.1| hypothetical protein plu2271 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785614|emb|CAE14564.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 292 Score = 39.4 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 63/247 (25%), Gaps = 20/247 (8%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTS----RMKRKSFTFETIRGIL 106 I ++ D +RI GSE+ G+ L + + E G++ Sbjct: 50 FILPAENPLADYRVRIFTP-GSELPFAGHPTIGTAHALLEAGLIQAREGRIVQECGAGLI 108 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHI------GPVNHLFLRNPFVV 160 + + + + PL+ P V Sbjct: 109 TLNVTERDEGQKLITFELPEPTITPLSSEQIDRLESILDCPLDRALTPALIDVGARWIVA 168 Query: 161 SMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 A+ + D + L + + G A + Sbjct: 169 HTTGAEAVLATKPD--YARLLEHDTQMNITGVCLYGAYHEGAEADIEVRSFAPSCGVNED 226 Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKE 274 G+ + A+ + + + + G G + + H + +F+ G A Sbjct: 227 PVCGSGNGSVAAFMRHHKVAMIDDKIVHSSQGKKLGRQGSVWLS-HSDGKIFVGGSAVTC 285 Query: 275 WEGKLDI 281 G + I Sbjct: 286 INGTITI 292 >gi|257469861|ref|ZP_05633953.1| hypothetical protein FulcA4_11006 [Fusobacterium ulcerans ATCC 49185] gi|317064090|ref|ZP_07928575.1| phenazine biosynthesis protein PhzF family [Fusobacterium ulcerans ATCC 49185] gi|313689766|gb|EFS26601.1| phenazine biosynthesis protein PhzF family [Fusobacterium ulcerans ATCC 49185] Length = 302 Score = 39.4 bits (90), Expect = 0.67, Method: Composition-based stats. Identities = 31/258 (12%), Positives = 68/258 (26%), Gaps = 33/258 (12%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILV 107 I D +R EV CG+ + K +T GIL Sbjct: 51 FIFSSDSKEYDVHVRFFTPLR-EVPICGHATIAAHYVIALENNFKEKTCIRQKTGAGILP 109 Query: 108 AKENRDGS-ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + + +V M + +++ I ++ D++ + L P + Sbjct: 110 VEIEPIDNSYNVIMTQGKVEFGDIINGKNLDRLVSALGI--DNDDLITAAPVQIVSTGHS 167 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVG 220 + D N + D+ R G+ Sbjct: 168 KVMIGIKDYKQLHNLRPDMKELNKLSDIINCNGYFVFTFDSKEKDILLKGRMFAPAIGIE 227 Query: 221 LTAACGSAACASVVASGCLHKT-----------------NRAVSVKMLGGGLLIEWHDNN 263 G+A + +R ++ + + IE + Sbjct: 228 EDPVTGNANGPVGAYIVKYNLVKIENDNLKFSAKQGMSIDREGTINV---NVHIENSEPV 284 Query: 264 HVFMTGEAKKEWEGKLDI 281 V ++G A ++ ++++ Sbjct: 285 KVQVSGTATVVFKTEIEL 302 >gi|239618454|ref|YP_002941776.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF 19.5.1] gi|239507285|gb|ACR80772.1| phenazine biosynthesis protein PhzF family [Kosmotoga olearia TBF 19.5.1] Length = 278 Score = 39.4 bits (90), Expect = 0.69, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 64/221 (28%), Gaps = 14/221 (6%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK-SFTFETIRGILVAKENRDGSISVDM 120 +R EV CG+ L S + F+T+ GI A+ D SV + Sbjct: 64 FELRWFTP-QVEVPLCGHATLATAWILFSEYGCRGKIRFKTLSGIHEAELVSD---SVRL 119 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 P +P+ + ++ ++ +V I ++ D Sbjct: 120 NFPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAK-LLVEFEQASIIRELKPDFKRLLS 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-VASGCL 239 + + G + G+ GSA L Sbjct: 179 LKTNYEIRGLIATARGNDGYDIVSRYFAPWV------GIDEDPVTGSAHTVLGPFWMERL 232 Query: 240 HKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 K GG LL+E + V++TG A +G L Sbjct: 233 GKKKMQAYQASERGGELLLEITGGDRVYITGNAVTILKGTL 273 >gi|324327647|gb|ADY22907.1| phenazine biosynthesis protein PhzF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 286 Score = 39.4 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 52 SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 110 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + +I D D + + + Sbjct: 111 DIIFMEQNKPIFYDVISPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKSETRLHTLQ 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 171 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 224 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 225 YLYEQHNLQKEVYV 238 >gi|290561347|gb|ADD38074.1| Phenazine biosynthesis-like domain-containing protein [Lepeophtheirus salmonis] Length = 242 Score = 39.4 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%) Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 GNP A+ ++ D+ + + + + ++ S +R W Sbjct: 19 GNPAAVVLLKSDIEDSFKQKIASEIKLSE-TAFVLCKNVNDFVSENEFYIR-WFTPSNEV 76 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFM 267 CG A AS K +S + +GG L +E ++ ++ M Sbjct: 77 PLCGHATLASAAVLFYRKKNKNKLSFETMGGDELHVELENDGYISM 122 >gi|119622833|gb|EAX02428.1| hCG1778314, isoform CRA_a [Homo sapiens] Length = 1323 Score = 39.4 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 40/199 (20%), Gaps = 23/199 (11%) Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 C + S +T A+ D + P I + Sbjct: 320 RCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGC 379 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 H G S + DL Sbjct: 380 LPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 423 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248 ++ S L + C ++ + T+ V++ Sbjct: 424 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTL 483 Query: 249 KMLGGGLLIEWHDNNHVFM 267 + GG I + VF+ Sbjct: 484 SLDGGDTAIRVQADGGVFL 502 >gi|29833535|ref|NP_828169.1| phenazine biosynthesis protein [Streptomyces avermitilis MA-4680] gi|29610658|dbj|BAC74704.1| putative phenazine biosynthesis protein [Streptomyces avermitilis MA-4680] Length = 272 Score = 39.4 bits (90), Expect = 0.71, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRF-LTSRMKRKSFTFETIRGILVAKENRDG 114 + D +R EV CG+ TS F T G+L+A DG Sbjct: 55 EGGEADWALRWFTPAT-EVAMCGHATLATAHVLHTSGTHEGPVRFATRSGVLIATPREDG 113 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 SI++D L IP + + + + + ++ + + + + D Sbjct: 114 SITLDFPTAPLTPVEIPEGVA-EALGAEPLT--ACDTGPNVGDLLIELADEKTVRGLAPD 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV- 233 L S ++A G+ GSA A Sbjct: 171 LRALARYSERGIIATARAEDPAQGHDFVS-------RCFFPNVGIDEDPVTGSAHTALAP 223 Query: 234 VASGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 S L + + + G + E D+ + +TG A +G+L Sbjct: 224 FWSQRLGRPDLTGLQASPRSGHVRTELRDDRTL-LTGRAVTVIDGEL 269 >gi|255019199|ref|ZP_05291325.1| diaminopimelate epimerase [Listeria monocytogenes FSL F2-515] Length = 53 Score = 39.4 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 214 TWERGVGLTAACGSAACASVVASGCLHK--TNRAVSVKMLGGGLLIE 258 T+ERGVG T ACG+A A + L K ++V GG + + Sbjct: 1 TFERGVGFTNACGTAMSACSLIKKILDKDTFETPLNVYNDGGRVQVT 47 >gi|299537179|ref|ZP_07050482.1| hypothetical protein BFZC1_14223 [Lysinibacillus fusiformis ZC1] gi|298727420|gb|EFI67992.1| hypothetical protein BFZC1_14223 [Lysinibacillus fusiformis ZC1] Length = 264 Score = 39.4 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 73/232 (31%), Gaps = 25/232 (10%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENR 112 + VD ++ + E+ CG+G L + K + TF T G L AK Sbjct: 52 EKKQVDFSLKWFTPNK-EIPICGHGTLASAFVLWQQGIVPKEHTITFHTASGPLHAKWQH 110 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + PI + P A D + +G ++V +GN I E Sbjct: 111 ERVEIAIKTYPIAEM-ECPSALE-DWLGCKPIFVG-----RTELDYIVEVGNEDQITQFE 163 Query: 173 DD---LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAA 229 + + + + + V+ + ++ + G C Sbjct: 164 PNFFAMKQFPVRGICLTSQSKEEGIDIVSRFFSPAQGIDEDHVNGSSHGALGPYWC---- 219 Query: 230 CASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 ++ + GG L + +N V + G A +G+L+I Sbjct: 220 ----EKLSKQQLVSK--QLSKRGGVLYVT-PHHNKVLIAGAAVTVLQGELNI 264 >gi|283781289|ref|YP_003372044.1| phenazine biosynthesis protein PhzF family [Pirellula staleyi DSM 6068] gi|283439742|gb|ADB18184.1| phenazine biosynthesis protein PhzF family [Pirellula staleyi DSM 6068] Length = 276 Score = 39.4 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 67/229 (29%), Gaps = 23/229 (10%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRK---SFTFETIRGILVAKENRDGS 115 +R EV CG+ +L + TF T G L+A R Sbjct: 54 GDHFELRWFTP-AIEVDLCGHATLAAAHYLWEIAAAETGLPITFSTRSGRLIA-APRGER 111 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDL 175 I +D + +P R+ + PV R ++V + + + Sbjct: 112 IELDFPLIEQAPQQLPEEL------REALGVAPVYTGKGRFDWLVEVATEREVLEACPNF 165 Query: 176 YHYDLASFGNLLAKHP-MFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 A + S+G N S G+ GSA C + Sbjct: 166 DRLGKAEGRGFILTAKASNSQGTNSPKYDFLSRFFAPAA----GINEDPVTGSAHCC--L 219 Query: 235 ASGCLHKTNRAV----SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 A K + GG + +E + V + G A + G+L Sbjct: 220 AGYWASKLGKPSMLGYQASQRGGEVAVEVRGD-RVLLGGAAITIFTGQL 267 >gi|84498557|ref|ZP_00997320.1| Phenazine biosynthesis PhzC/PhzF protein [Janibacter sp. HTCC2649] gi|84381090|gb|EAP96975.1| Phenazine biosynthesis PhzC/PhzF protein [Janibacter sp. HTCC2649] Length = 279 Score = 39.0 bits (89), Expect = 0.74, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 64/240 (26%), Gaps = 17/240 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + D D +RI G + + +L + + G + Sbjct: 48 FLSAPTDPGADYRVRIWTIGGELPFAGHPTIGSAHAWLEAGGVPRGEAVIQECGAGLVTV 107 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKM----DRDRFHIGPVNHLFLRNPFVVSMGNPH 166 R P+ + + + + V +G+ Sbjct: 108 RRSPR-LGFAAPPMTRSGEVDAELRARIVRALAIDESAVVDMAWADNGPGWVGVDLGSAQ 166 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226 A+ V D+ + + + + + +E R G G Sbjct: 167 AVLDVVPDIAAFADLKVTVIGRHNEARATELGA------DVEVRAFYADGRDFGEDPVTG 220 Query: 227 SAACASVVASGCLH-----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 SA A R SV G + IE + V+++G+A EG +D+ Sbjct: 221 SANAALAQWLIGTGALPDSYVARQGSVIGREGRVHIE-AADGEVWVSGDAVTRVEGSVDL 279 >gi|79461947|ref|NP_192195.2| catalytic [Arabidopsis thaliana] gi|332656839|gb|AEE82239.1| Phenazine biosynthesis PhzC/PhzF protein [Arabidopsis thaliana] Length = 313 Score = 39.0 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 17/242 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + +R EV CG+ L S S E + + Sbjct: 74 FLIPITGFQARFSLRWFTPLA-EVDLCGHATLASAHCLFSNGLVDSDMVEFVTRSGILT- 131 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +S + K + + + ++ I Sbjct: 132 --AKRVSDTSELSDGEVKGGTFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKA 189 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVG 220 + L S ++ P + + I + R GV Sbjct: 190 TATNNILVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVD 249 Query: 221 LTAACGSAACASV-VASGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 CGSA CA S ++K + G + I + V + G+A EG Sbjct: 250 EDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEG 309 Query: 278 KL 279 + Sbjct: 310 HV 311 >gi|220905239|ref|YP_002480551.1| hypothetical protein Ddes_1977 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869538|gb|ACL49873.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 283 Score = 39.0 bits (89), Expect = 0.77, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIE-WHDNNHVF--MTGEAKKEWE 276 L +ACGS A A ++ + + S+ GG L + + ++ + G + Sbjct: 215 LESACGSGALALALSRAKSNG-GKHFSIMQPGGSPLEVRLFSEDGTAMAGINGPVALVAD 273 Query: 277 GKLDIKTG 284 G++ + G Sbjct: 274 GQVWLPGG 281 >gi|4038587|emb|CAA06167.1| mucin [Homo sapiens] Length = 1283 Score = 39.0 bits (89), Expect = 0.77, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 40/199 (20%), Gaps = 23/199 (11%) Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 C + S +T A+ D + P I + Sbjct: 281 RCPELCPRTCPLNMQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDITHSGC 340 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 H G S + DL Sbjct: 341 LPLGQCPCTHGGRTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 384 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248 ++ S L + C ++ + T+ V++ Sbjct: 385 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELRKCGLTDNENCLKAVTL 444 Query: 249 KMLGGGLLIEWHDNNHVFM 267 + GG I + VF+ Sbjct: 445 SLDGGDTAIRVQADGGVFL 463 >gi|169840488|ref|ZP_02873676.1| hypothetical protein cdivTM_25664 [candidate division TM7 single-cell isolate TM7a] Length = 28 Score = 39.0 bits (89), Expect = 0.88, Method: Composition-based stats. Identities = 6/14 (42%), Positives = 8/14 (57%) Query: 5 MVDFAKMEGIGNKI 18 M+ F K +G GN Sbjct: 1 MLKFEKYQGAGNDF 14 >gi|150864237|ref|XP_001382977.2| hypothetical protein PICST_55048 [Scheffersomyces stipitis CBS 6054] gi|149385493|gb|ABN64948.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 296 Score = 39.0 bits (89), Expect = 0.92, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 69/252 (27%), Gaps = 30/252 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS----FTFETIRGIL 106 I + + D +RI +E+ G+ L + K E G++ Sbjct: 50 FILKPTEPTADYKVRIFTP-VNELPFAGHPTLGTCFSLLESGRIKPKNGLIIQECKAGLV 108 Query: 107 VAKENRDG-----SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS 161 + ++ + P + P+ + P +V Sbjct: 109 SIRVENYDENDLSNVFLSFTLPYYKFS--PITEEAIAQTEVGLGLPAGAIAASTPPVLVD 166 Query: 162 MGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW--ERGV 219 G AIF ++D D+ + + L + + ++R G Sbjct: 167 DGPKWAIFQLKDAQAVLDVQIDFTKIGVVSEANGWSGLGLFGKHEDGTYEMRNLIPAEGS 226 Query: 220 GLTAACGSAACAS-VVASGCLH------------KTNRAVSVKMLGGGLLIEWHDNNHVF 266 ACGS A A L K NR +K+ L+ V Sbjct: 227 TEDPACGSGAGAVGAYVGAFLKEEVKSLNIKQGIKVNRDAKLKV---TLVTNAEGKLDVI 283 Query: 267 MTGEAKKEWEGK 278 + G + G Sbjct: 284 VGGNVVSVFNGT 295 >gi|229075198|ref|ZP_04208192.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-18] gi|228707975|gb|EEL60154.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-18] Length = 285 Score = 39.0 bits (89), Expect = 0.93, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 39/194 (20%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D I EV CG+ L K + V Sbjct: 51 SESEIADYKIEYFTP-KEEVDLCGHATIGSFTILMHLNKLFKNRYTIETNSGVLTITIKE 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + +I D D + + + Sbjct: 110 DIIFMEQNEPIFYDVISPNEFIDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHTMQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKKISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 224 YLYEQHYLQKEVYV 237 >gi|257126696|ref|YP_003164810.1| phenazine biosynthesis protein PhzF family [Leptotrichia buccalis C-1013-b] gi|257050635|gb|ACV39819.1| phenazine biosynthesis protein PhzF family [Leptotrichia buccalis C-1013-b] Length = 280 Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 20/225 (8%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 ++ +R G E+ CG+ + + ++ T NR Sbjct: 58 NAIHYKLRWFTPGG-EIDLCGHATLACAFVIMNYYEKNLKTVIFDTLSGKLTVNRKNGDL 116 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177 ++ P D K + + + P R+ V F + +L Sbjct: 117 YELDFPAYDLKKVEITDEM----IELIGKKPTEAYLGRDLMCVFDDEE---FILSANLDS 169 Query: 178 YDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA------CGSAACA 231 + LL + ++ N S+ + + R CGS C Sbjct: 170 EKIKKLDGLLLH--ITAQHSNYSLNSKIKNTTDKIDCISRSFAPKLNVYEDPVCGSGHCH 227 Query: 232 SVVASGCLHKTNRAVSVKM---LGGGLLIEWHDNNHVFMTGEAKK 273 ++ G L +N + M+G+A Sbjct: 228 IAPYWIK-KLQKENLTAYQASKRSGMLYCSLANNGRMKMSGKAAL 271 >gi|229103753|ref|ZP_04234433.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-28] gi|228679629|gb|EEL33826.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock3-28] Length = 298 Score = 38.6 bits (88), Expect = 0.99, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 39/194 (20%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D I EV CG+ L K + V Sbjct: 64 SESEIADYKIEYFTP-KEEVDLCGHATIGSFTILMHLNKLFKNRYTIETNSGVLTITIKE 122 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + +I D D + + + Sbjct: 123 DIIFMEQNEPIFYDVISPNEFIDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHTMQ 182 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 183 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 236 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 237 YLYEQHYLQKEVYV 250 >gi|153832175|ref|ZP_01984842.1| phenazine biosynthesis PhzC/PhzF protein [Vibrio harveyi HY01] gi|148871486|gb|EDL70341.1| phenazine biosynthesis PhzC/PhzF protein [Vibrio harveyi HY01] Length = 266 Score = 38.6 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 66/227 (29%), Gaps = 20/227 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +R EV CG+G + L + K G +A + G + + Sbjct: 54 DMRLRWFTP-KVEVALCGHGTLATAQILKEQGLAKV-------GDTIAFQTLSGELHAKV 105 Query: 121 GEPILDWKLIPLARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 E ++ D + D + + + + + Sbjct: 106 NESTIELDFPSTQLEMDVEQDAELLAALGLKAEQVLSYVQFDSKGFIEVD------NEQT 159 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSAACA-SVVA 235 + + A+ S + + + GV GSA CA + Sbjct: 160 VLELAPNFDALKNIQGRGVVVTAQSNSPDLDFISRYFAPWVGVNEDPVTGSAHCALTQFW 219 Query: 236 SGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L + RA GG L E +N + + G A GKL + Sbjct: 220 SQKLGQNQFRAYQASARGGHLQTELLENGRIKLIGSATTVISGKLKV 266 >gi|229044010|ref|ZP_04191699.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH676] gi|228725291|gb|EEL76559.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH676] Length = 287 Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + ++ D D + + + I Sbjct: 112 DIIFMEQNKPRFYDVVSPNEFIDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 226 YLYEQHYLQKEVYV 239 >gi|126699370|ref|YP_001088267.1| hypothetical protein CD1761 [Clostridium difficile 630] gi|115250807|emb|CAJ68631.1| putative phenazine biosynthesis PhzC/PhzF protein [Clostridium difficile] Length = 260 Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 20/228 (8%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R +E+ CG+ +++ + + + R+G++ Sbjct: 50 KGKGNYELRWFTP-KAEIDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNGNL 108 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + +++P+ + P + R+ ++ I + Sbjct: 109 YEMIF-----PEIMPIEIELSPQQANLIGCVPSDVYSSRDLILLLNSEQEVINYKP---N 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + L + L + A+ ++ + + GS+ C + Sbjct: 161 YAQLRKLTDWL---------GIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYW 211 Query: 237 GCLHKTNRAVSVKM--LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 ++ V+ ++ GG + E +N V ++GEA +G + I Sbjct: 212 SEKLGKHKMVAAQLSNRGGIIQCEVLKDNTVKISGEAVLFMQGTIKID 259 >gi|183983517|ref|YP_001851808.1| hypothetical protein MMAR_3536 [Mycobacterium marinum M] gi|183176843|gb|ACC41953.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 280 Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 30/239 (12%), Positives = 57/239 (23%), Gaps = 23/239 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVA 108 + +D + +RI G E+ G + G + Sbjct: 51 FVLPPEDPNAHYKLRIFTPGG-ELAFAGHPTLGSAHAWLEHRESPGCADRIVQECGAGLV 109 Query: 109 KENRDGSISVDMGEPIL---DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS-MGN 164 + R + P+ D L + R + + + V + Sbjct: 110 QLRRHHGMLSFAAPPMRRTGDLDEAYLTQIVAAFGIARDQVLAHQWVDNGPGWAVVQLAT 169 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 + +E D A G + A L GV Sbjct: 170 AQEVLDLEPDFSQMSSAMVGAIGAYPSGSEHAFELRTFAP-----------GVGVAEDPV 218 Query: 225 CGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEGK 278 CGS + +V G + I + V+++G ++G Sbjct: 219 CGSMNAGVAQWLTSTGTAPLSYTVSQGARLARAGEISITTDADGVVWVSGATSTCFKGT 277 >gi|134296539|ref|YP_001120274.1| PhzF family phenazine biosynthesis protein [Burkholderia vietnamiensis G4] gi|134139696|gb|ABO55439.1| phenazine biosynthesis protein PhzF family [Burkholderia vietnamiensis G4] Length = 293 Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 60/243 (24%), Gaps = 11/243 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM--KRKSFTFETIRGILVA 108 + D D +RI G E+ G+ R G+ Sbjct: 52 FVCTPSDPQADYRVRIFTPGG-ELPFAGHPTLGTAHAFLESGARPRTPGRLIQQCGVGRV 110 Query: 109 KENRDGSISVDMGEPIL----DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGN 164 + P D P + + D P VV + + Sbjct: 111 ELREQPDGWAFAAPPARFTPLDRSDYPALAAALRSDAIDPDAEPCAVDNGAPWLVVRLTS 170 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 A + D + ++ + A + + G Sbjct: 171 ADACVGLAPDPAALAALTHRYGTHGLTAYAPHPDGGPATFEIRCLMSGGGFATGEDPVTG 230 Query: 225 CGSAACASVVASGCLH----KTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 +AA A +++ T R + G + + + D+ +++ G +G Sbjct: 231 SANAALAGLLSRQQRRPGASYTARQGTAIGRDGRIAVRYDDDGTIWIGGNVVTIVDGTFS 290 Query: 281 IKT 283 + Sbjct: 291 LPA 293 >gi|30020353|ref|NP_831984.1| phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579] gi|229127663|ref|ZP_04256652.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-Cer4] gi|229144859|ref|ZP_04273256.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-ST24] gi|296502829|ref|YP_003664529.1| phenazine biosynthesis protein PhzF [Bacillus thuringiensis BMB171] gi|29895904|gb|AAP09185.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579] gi|228638581|gb|EEK95014.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-ST24] gi|228655740|gb|EEL11589.1| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-Cer4] gi|296323881|gb|ADH06809.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis BMB171] Length = 287 Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMYLNKLFRNRYTIETNSGVLTITIKD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + ++ D D + + + I Sbjct: 112 DIIFMEQNKPRFYDVVSPNEFIDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 226 YLYEQHYLQKEVYV 239 >gi|299769355|ref|YP_003731381.1| epimerase, PhzC/PhzF [Acinetobacter sp. DR1] gi|298699443|gb|ADI90008.1| epimerase, PhzC/PhzF [Acinetobacter sp. DR1] Length = 289 Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 71/249 (28%), Gaps = 27/249 (10%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106 + D+ D +RI SE+ G+ L ++ + G++ Sbjct: 50 FVLPATDSQADYQVRIFTP-QSELPFAGHPTIGTAYALLEAGLVTAQKGKVVQQCAAGLV 108 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + G IS ++ +P + I N +V +G Sbjct: 109 TLTVSDSGHISFELPKPKITPLD-------AMHTEKLAEILKCEINTQWNATLVDVGARW 161 Query: 167 AI---FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL-ESLDLRTWER--GVG 220 + E L + + +++R++ G+ Sbjct: 162 IVLQAVNAEAVLATQPDFVALKQHDLEMKVTGATVFGFYESNDEQKHIEVRSFGPACGIN 221 Query: 221 LTAACGS--AACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAK 272 CGS + AS + + + G G L +E H + + + G A Sbjct: 222 EDPVCGSGNGSVASFIRHYGILPAQNDTVLSSQGQALGRDGQLQLELHQD-KILVGGTAV 280 Query: 273 KEWEGKLDI 281 +G + + Sbjct: 281 TCIDGTIKL 289 >gi|229030743|ref|ZP_04186771.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1271] gi|228730591|gb|EEL81543.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1271] Length = 298 Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 19/200 (9%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112 + D I EV CG+ +++ + +T ET G V Sbjct: 64 SESEVADYKIEYFTP-KEEVDLCGHATIGSFAILMHVNKLFKNCYTIETNSG--VLTITI 120 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 + + + +I D D +VS G + ++ Sbjct: 121 KDDVIFMEQNEPIFYDVISPNEFIDCFDIKDIDN-------TYPIQIVSTGLKDILVPIK 173 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSA 228 + L + K S+ N+ + + + AA G++ Sbjct: 174 SE---TQLHTLEPNFEKIKAISKYYNVVGMHLYTFNDNRIICRNFAPLYDINEEAATGTS 230 Query: 229 ACASVVASGCLHKTNRAVSV 248 A + + V V Sbjct: 231 NGALACYLYEQNYLQKEVYV 250 >gi|297687817|ref|XP_002821398.1| PREDICTED: mucin-5B-like, partial [Pongo abelii] Length = 2386 Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 38/187 (20%), Gaps = 23/187 (12%) Query: 88 LTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIG 147 + S +T A+ D + P + + H G Sbjct: 331 NMQHHECGSPCEDTCSNPQRAQLCEDHCVDGCFCPPGTVLDDVTHSGCLPLGQCPCTHSG 390 Query: 148 PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSL 207 S + DL ++ S Sbjct: 391 RTYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPGTCSVQGGAHIST 434 Query: 208 ESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSVKMLGGGLLIEWH 260 L + C + + T+ V++ + GG I Sbjct: 435 YDEKLYDLHGDCSYVLSKKCADGSFIVLAELRKCGLTDNENCLKAVTLSLDGGDTAIRVQ 494 Query: 261 DNNHVFM 267 + VF+ Sbjct: 495 ADGGVFL 501 >gi|47568247|ref|ZP_00238950.1| phenazine biosynthesis protein PhzF family [Bacillus cereus G9241] gi|47555075|gb|EAL13423.1| phenazine biosynthesis protein PhzF family [Bacillus cereus G9241] Length = 250 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 39/194 (20%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 16 SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 74 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + + Sbjct: 75 DIIFMEQNKPIFYDVVSPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKNETRLHTLQ 134 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 135 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 188 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 189 YLYEQHNLQKEVYV 202 >gi|325122850|gb|ADY82373.1| hypothetical protein BDGL_001787 [Acinetobacter calcoaceticus PHEA-2] Length = 289 Score = 38.2 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 81/286 (28%), Gaps = 43/286 (15%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72 Query: 75 QSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 G +K K G + S + P K+ PL Sbjct: 73 PFAGHPTIGTAYALLEAGLIKAKEGKLVQQCGAGLVTLTVSESSHISFELPK--PKITPL 130 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 I N +V +G + + + A Sbjct: 131 DA---MHTEKLAEILKCEINTQWNAALVDVGARWIVLQA---VNAEAVLDSQPDFAALKE 184 Query: 193 FSEGVNLS--IARVTSLESLDLRTWER-------GVGLTAACGS--AACASVVASGCLHK 241 + ++ + + + E G+ CGS + AS + + Sbjct: 185 HDLEMKVTGATVFGFHENNDEQKHIEVRSFAPSCGINEDPVCGSGNGSVASFIRYYGILP 244 Query: 242 TNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V V G G L +E + + + + G A +G + + Sbjct: 245 AQNDVVVSSQGGAVGRDGQLQLELYQD-KILVGGTAFTCIDGTIKL 289 >gi|291404275|ref|XP_002718617.1| PREDICTED: MAWD binding protein [Oryctolagus cuniculus] Length = 288 Score = 38.2 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 66/229 (28%), Gaps = 8/229 (3%) Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR--KSFTFETIRGILVAKENRDGSI 116 S +R SE+ CG+ L ++ + TF T+ G L A DG + Sbjct: 62 SSHFGLRWFTP-ASEIPLCGHATLASAAVLFHKINNVNSTLTFVTLSGELRATRAEDGVV 120 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFV--VSMGNPHAIFFVEDD 174 P + D +R V + + ++ + Sbjct: 121 MDFPLYPAHPQDFHEVEALIKTAIGDTLVQDVRYSPDIRGLLVRLSDSYDRSFLENLKVN 180 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSA-ACASV 233 + + + +G S W GV GSA S Sbjct: 181 TSNLLQVENTGKVKGLILTLKGEPGGETHAFDFYSRYFAPW-YGVAEDPVTGSAHTVLSS 239 Query: 234 VASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 S L K RA GG L + + V + G+A EG L + Sbjct: 240 YWSQQLGKKEMRAFQCSCRGGELKLSLCSDGRVDIRGDAAVVVEGTLSV 288 >gi|289582249|ref|YP_003480715.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC 43099] gi|289531802|gb|ADD06153.1| phenazine biosynthesis protein PhzF family [Natrialba magadii ATCC 43099] Length = 302 Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 72/247 (29%), Gaps = 13/247 (5%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM-KRKSFTFETIRGILVAKENRDGS 115 D ++ EV CG+ L + + T ET G+L + DG+ Sbjct: 56 SDEADYRVQYFTP-TQEVDLCGHATIGSFAHLHEEGLEPGTTTLETNVGVLDIDVSDDGT 114 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173 + + P + + AR+ + + ++ + V S G P + + Sbjct: 115 VWMTQNTPQVREVDLSYARAAEVLGVEQAALEGARDDIPLA--VSSTGLPFLVVPITYLS 172 Query: 174 ---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 D A S + G+ G+A+ Sbjct: 173 DLGDAAPDMAAVEELTDEFDAAGVYLFTFDALDRESTLHGRMFAPGAGIPEDPVTGTASG 232 Query: 231 ASVVASGCLHKTNRAV--SVKMLGGGLLIEWHDNNHVFMTGEAKKE-WEGKLDIKTGKWI 287 A + + +++ G ++ V + G + G + I Sbjct: 233 AVAAYLDHFGAFDDDLPEELRLEQGH-YVDRPGYVRVQLEGSTVRVGGRGVTTLDGSIVI 291 Query: 288 KKNEDDE 294 K+++DE Sbjct: 292 PKDDEDE 298 Score = 36.3 bits (82), Expect = 4.9, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 197 VNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLL 256 + + + ++ + CG A S +++ G L Sbjct: 48 SETAFLQASDEADYRVQYF-TPTQEVDLCGHATIGSFAHLHEEGLEPGTTTLETNVGVLD 106 Query: 257 IEWHDNNHVFMT 268 I+ D+ V+MT Sbjct: 107 IDVSDDGTVWMT 118 >gi|302563545|ref|NP_001180703.1| phenazine biosynthesis-like domain-containing protein [Macaca mulatta] gi|297301274|ref|XP_002805753.1| PREDICTED: phenazine biosynthesis-like domain-containing protein-like isoform 2 [Macaca mulatta] Length = 288 Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 61/224 (27%), Gaps = 8/224 (3%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETI--RGILVAKENRDGSISVD 119 +R SEV CG+ L ++K + T + G L A++ DG + Sbjct: 65 FGLRWFTP-ASEVPLCGHATLASAAVLFYKIKNMNSTLTFVTLSGELRARQAEDGIVLDL 123 Query: 120 MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYD 179 P+ + + R + + F + + Sbjct: 124 PLYPVYPQDFHEVEDLIKTAIGNTLVQDICYSPDTRKLLLRLSDTYNRSFLENLKVNTEN 183 Query: 180 LASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRT--WERGVGLTAACGSA-ACASVVAS 236 L N + + S + W GV GSA A S S Sbjct: 184 LLQVENTGKVKGLILTLKGEPGGQSQSFDFYSRYFAPW-VGVAEDPVTGSAHAVLSSYWS 242 Query: 237 GCLHKTNRAV-SVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKL 279 L K GG L I V + G A EG L Sbjct: 243 QQLGKKEMHAFQCSQRGGELGISLRPAGRVDIRGGAAVVLEGTL 286 >gi|118618210|ref|YP_906542.1| hypothetical protein MUL_2768 [Mycobacterium ulcerans Agy99] gi|118570320|gb|ABL05071.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length = 280 Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 27/241 (11%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVA 108 + +D + +RI G E+ G + G + Sbjct: 51 FVLPPEDPNAHHKLRIFTPGG-ELAFAGHPTLGSAHAWLEHRESPGCADHIVQECGAGLV 109 Query: 109 KENRDGSISVDMGEPILDWKLIP------LARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + R + P+ + + +F V++ VV + Sbjct: 110 QLRRHHGMLSFAAPPMRRTGDLDEAYRTQIVAAFGIARDQVLAHQWVDNGP--GWAVVQL 167 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 + +E D A G + A L GV Sbjct: 168 ATAQEVLDLEPDFSQMSAAMVGAIGAYPSGSEHAFELRTFAP-----------GVGVAED 216 Query: 223 AACGSAACASVVASGCLHKTNRAVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEWEG 277 CGS + +V G + I + V+++G ++G Sbjct: 217 PVCGSMNAGVAQWLTSTGTAPLSYTVSQGARLARTGEISITTDPDGVVWVSGATSTCFKG 276 Query: 278 K 278 Sbjct: 277 T 277 >gi|212704355|ref|ZP_03312483.1| hypothetical protein DESPIG_02410 [Desulfovibrio piger ATCC 29098] gi|212672214|gb|EEB32697.1| hypothetical protein DESPIG_02410 [Desulfovibrio piger ATCC 29098] Length = 282 Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 223 AACGSAACASVVASGCLHKTNRAVSVKMLGG-GLLIEWHDN--NHVFMTGEAKKEWEGKL 279 ACGS A A + + + + GG L + D+ F+ G G++ Sbjct: 217 NACGSGALALALLLAAKG-NRKPLDIMQPGGSSLHVHIPDDEQGKAFIDGPVDLVARGRV 275 Query: 280 DIKTGKWIKKNE 291 W+ + Sbjct: 276 ------WLPDAQ 281 >gi|42782163|ref|NP_979410.1| PhzF family phenazine biosynthesis protein [Bacillus cereus ATCC 10987] gi|42738088|gb|AAS42018.1| phenazine biosynthesis protein PhzF family [Bacillus cereus ATCC 10987] Length = 285 Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 47/198 (23%), Gaps = 15/198 (7%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D I EV CG+ L K + V Sbjct: 51 SESEIADYKIEYFTP-KEEVDLCGHATIGSFAILMHVNKLFKNRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + +I D D +VS G + ++ + Sbjct: 110 DIIFMEQNEPIFYDVISPNEFIDCFDSKAIDN-------TYPIQIVSTGLKDILIPIKSE 162 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSAAC 230 L + K S+ N+ + + + AA G++ Sbjct: 163 ---TLLHTLQPNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLYDINEEAATGTSNG 219 Query: 231 ASVVASGCLHKTNRAVSV 248 A H + V V Sbjct: 220 ALACYLYEQHYLQKEVYV 237 >gi|156977830|ref|YP_001448736.1| epimerase [Vibrio harveyi ATCC BAA-1116] gi|156529424|gb|ABU74509.1| hypothetical protein VIBHAR_06618 [Vibrio harveyi ATCC BAA-1116] Length = 266 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 70/226 (30%), Gaps = 18/226 (7%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 D +R EV CG+G + L + K G +A + G + + Sbjct: 54 DMRLRWFTP-KVEVALCGHGTLATAQILKEQGLAKV-------GDTIAFQTLSGELHAKV 105 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 E ++ D L L+ VVS + F+E D + Sbjct: 106 NESTIELDFPSTQLEMDVEQDATLLAA----LGLKAEQVVSYAQFDSKGFIEVD-SEQTV 160 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSAACA-SVVAS 236 + A+ S + + GV GSA CA + + Sbjct: 161 LELEPNFDALKNIQGRGVVVTAQSNSPGLDFISRYFAPWVGVNEDPVTGSAHCALTQFWA 220 Query: 237 GCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 L + RA GG L E +N + + G AK GKL + Sbjct: 221 QKLGQNQFRAYQASARGGHLQTELLENGRIKLIGSAKTVISGKLKV 266 >gi|228958533|ref|ZP_04120253.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801160|gb|EEM48057.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 287 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 19/200 (9%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112 + D EV CG+ +++ R +T ET G+L Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNHYTIETNSGVLTITITD 111 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 D P+ + + +VS G + ++ Sbjct: 112 DIIFMEQNK---------PIFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIK 162 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGV----GLTAACGSA 228 ++ L + K S+ N+ + + + AA G++ Sbjct: 163 SEI---QLHALQPNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLYNINEEAATGTS 219 Query: 229 ACASVVASGCLHKTNRAVSV 248 A H + V V Sbjct: 220 NGALACYLYEQHYLQKEVYV 239 >gi|110596858|ref|ZP_01385148.1| Phenazine biosynthesis PhzC/PhzF protein [Chlorobium ferrooxidans DSM 13031] gi|110341545|gb|EAT60005.1| Phenazine biosynthesis PhzC/PhzF protein [Chlorobium ferrooxidans DSM 13031] Length = 259 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 21/222 (9%) Query: 62 AFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMG 121 +R E+ CG+ + + + G + Sbjct: 57 FKLRWFTPVR-ELDLCGHATLAAAHVIFDIIGYSRQRITFETRSGDLFVQKRGELLEMDF 115 Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181 PL F ++ + P+ + + + Sbjct: 116 PASP-----PLPCGFSEILAEALGKRPLEVWASDDYLALFDSEATL-----RAITPDYAM 165 Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV-VASGCLH 240 L + + G ++ + G+ GSA C + L Sbjct: 166 LCELDLRGVIITAPGSDVDFVSR-------FFAPKFGIHEDPVTGSAHCTLAPYWANKLG 218 Query: 241 KTNRAVS-VKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 K V GG + E + V ++G A E ++ + Sbjct: 219 KHTLTAKQVSRRGGNIACEVKGD-RVLLSGSAVTVMETEITL 259 >gi|254586163|ref|XP_002498649.1| ZYRO0G15378p [Zygosaccharomyces rouxii] gi|238941543|emb|CAR29716.1| ZYRO0G15378p [Zygosaccharomyces rouxii] Length = 277 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 77/277 (27%), Gaps = 35/277 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +V+D ++ D + ++ N + + + D +RI +E+ Sbjct: 22 VVLDA----QGLSEDQMQTVARWTN------LSETTFVLPPTHPNADYTLRIFTP-RTEL 70 Query: 75 QSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 G + +K K+ DG + + P +K I Sbjct: 71 PFAGHPTLGSAHALVESGLVKPKNGILVQQCAQGFVPIRVDGGVFT-LELPDAKFKEIS- 128 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 ++ P V + + D LA L Sbjct: 129 QEDISTLESILKCKLEAPAPVDVGPTFVIGRVENIETLLGLDPDLNRLAELERKLEV--- 185 Query: 193 FSEGVNLSIARVTSLESLDLRTW--ERGVGLTAACGSAACASVVASGCLHKTNRAVSVKM 250 A +++RT+ GV CGS A V C + Sbjct: 186 ---TGITLFADYPDSTDIEVRTFAPSSGVSEDPVCGSGNGALAVFRKCRGLLETPSYMAK 242 Query: 251 LG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 G G + I N+ V + GE +G+L++ Sbjct: 243 QGRKVGRDGRVYITV--NSVVRVGGECVTCLKGELNV 277 >gi|68006370|ref|NP_001018772.1| enhancer of RNA-mediated gene silencing [Schizosaccharomyces pombe 972h-] gi|29839364|sp|Q8NIL3|AES1_SCHPO RecName: Full=Antisense-enhancing sequence 1; AltName: Full=AES factor 1 gi|20873642|emb|CAD31747.1| enhancer of RNA-mediated gene silencing [Schizosaccharomyces pombe] Length = 296 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 64/198 (32%), Gaps = 7/198 (3%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKR----KSFTFETIRGIL 106 + D +RI + E+ G+ + E + G++ Sbjct: 50 FVQKPTIDKADYRLRIFTPEC-ELSFAGHPTIGSCFAVVESGYCTPKNCKIIQECLAGLV 108 Query: 107 VAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPH 166 + + + + +K++ + + + I + P ++ G Sbjct: 109 ELTIDGEKDEDTWISFKLPYYKILQTSETAISEVENALGIPLNYSSQVSPPVLIDDGPKW 168 Query: 167 AIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--GVGLTAA 224 + + + +L L++ ++ + +++ +S + R++ V A Sbjct: 169 LVIQLPNATDVLNLVPKFQSLSQVCKNNDWIGVTVFGELGKDSFESRSFAPLIHVNEDPA 228 Query: 225 CGSAACASVVASGCLHKT 242 CGS A A V G KT Sbjct: 229 CGSGAGAVGVYIGSSQKT 246 >gi|229109706|ref|ZP_04239292.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-15] gi|228673747|gb|EEL29005.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock1-15] Length = 287 Score = 37.8 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + ++ D D + + + I Sbjct: 112 DIIFMEQNKPRFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 226 YLYEQHYLQKEVYV 239 >gi|42566256|ref|NP_192194.2| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] gi|51536516|gb|AAU05496.1| At4g02850 [Arabidopsis thaliana] gi|51972140|gb|AAU15174.1| At4g02850 [Arabidopsis thaliana] gi|332656838|gb|AEE82238.1| phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] Length = 306 Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 22/249 (8%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILV 107 LI +R E+ CG+ + S + F T GIL Sbjct: 58 LIPIPGSEPPRFLLRWFTAVA-EMDICGHATLASAHSIFSNSLVGSSDTVEFSTNSGILT 116 Query: 108 AKENRDGSISVDMGEPILDWKLIPL----ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMG 163 AK S +++ +I ++ + V+ + ++ Sbjct: 117 AKRLS-DCDSKRSFLIEMNFPVITTCEYSSKDVSIFSKALNGATIVDVRETKTDRLIFKP 175 Query: 164 NPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNL----SIARVTSLESLDLRTWER-- 217 A D L+S+ +++ P + V I + + R Sbjct: 176 LIGAFKTTSTDQIIVVLSSWESVIEFQPRVDDIVKCPGKVMIVTAAAPQGSPFDFCSRLF 235 Query: 218 ----GVGLTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGE 270 G+ + CGSA C+ S ++K + + G L + + + V +TG+ Sbjct: 236 APKLGLNEDSVCGSAHCSLAHYWSLKMNKCDFVAFAASQRSGTLKVHYDKEKQRVLLTGK 295 Query: 271 AKKEWEGKL 279 A +G + Sbjct: 296 AVTVMKGSI 304 >gi|47229749|emb|CAG06945.1| unnamed protein product [Tetraodon nigroviridis] Length = 1285 Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 56/192 (29%), Gaps = 10/192 (5%) Query: 16 NKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75 N+ ++ + + T+D + + QI+++ + E Sbjct: 1058 NEFII--TQHPLPHTTTDFWRMIWDHNA----QIIVMLPDNQGLAEDEFVYW-PSREEAM 1110 Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 +C ++ + + IL A ++ P PL+ + Sbjct: 1111 NCITFTVTLISRDRLCLSNEEQII-IHDFILEATQDDYVLEVRHFQCPKWPNPDAPLSST 1169 Query: 136 FDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 F+ + + + + VS G A+ + L + + + + Sbjct: 1170 FELISVIKEEAMTRDGPTIVHDEYGAVSAGMFCALTTLSQQLENEGVVDIYQVAKMINLM 1229 Query: 194 SEGVNLSIARVT 205 GV +I + Sbjct: 1230 RPGVFTNIEQYH 1241 >gi|266619209|ref|ZP_06112144.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi DSM 13479] gi|288869260|gb|EFD01559.1| phenazine biosynthesis protein, PhzF family [Clostridium hathewayi DSM 13479] Length = 317 Score = 37.8 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 56/192 (29%), Gaps = 13/192 (6%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRF--LTSRMKRKSFTFETIRGILVAKENR 112 Q D + G EV CG+ ++K+ +T ET GIL Sbjct: 82 SQSELADYKLEYFTPTG-EVPLCGHATIAAFVVLNYFGQLKKCEYTIETKSGILSIAVKD 140 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 G I + P + + LA D + +VS G I VE Sbjct: 141 GGVIFMQQNTPEFY-ETLELADVVDCLG-----FNADTAPGNLPVQIVSTGLRDIIVPVE 194 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE----RGVGLTAACGSA 228 + L + ++K V + + L G+ +A G++ Sbjct: 195 NPLVLETMVPDFAAVSKLSQKWNCVGIHAFSLVEDGKLTAVCRNFAPLYGIDEESATGTS 254 Query: 229 ACASVVASGCLH 240 CA Sbjct: 255 CCALACYLYQYG 266 >gi|229157332|ref|ZP_04285410.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 4342] gi|228626059|gb|EEK82808.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 4342] Length = 286 Score = 37.8 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 52 SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 110 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 111 DIIFMEQNKPIFYDVVSPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKSETRLHTLQ 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 171 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 224 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 225 YLYEQHNLQKEVYV 238 >gi|228986893|ref|ZP_04147020.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772842|gb|EEM21281.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 286 Score = 37.8 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 52 SESEIADYKFEYFTP-KEEVDLCGHATIGSFVILMHLNKLCQNRYTIETNSGVLTITIKD 110 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 111 DIIFMEQNKPIFYDVVSPNEFIDCFDMKAIDDKYPIQIVSTGLKDILIPIKSETRLHTLQ 170 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 171 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 224 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 225 YLYEQHNLQKEVYV 238 >gi|4263518|gb|AAD15344.1| similar to PHZF, catalyzing the hydroxylation of phenazine-1-carboxylic acid to 2-hydroxy-phenazine-1-carboxylic acid [Arabidopsis thaliana] gi|7269770|emb|CAB77770.1| putative protein [Arabidopsis thaliana] Length = 313 Score = 37.8 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 218 GVGLTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKE 274 G+ + CGSA C+ S ++K + + G L + + + V +TG+A Sbjct: 247 GLNEDSVCGSAHCSLAHYWSLKMNKCDFVAFAASQRSGTLKVHYDKEKQRVLLTGKAVTV 306 Query: 275 WEGKL 279 +G + Sbjct: 307 MKGSI 311 >gi|300173344|ref|YP_003772510.1| hypothetical protein LEGAS_1043 [Leuconostoc gasicomitatum LMG 18811] gi|299887723|emb|CBL91691.1| Uncharacterized isomerase [Leuconostoc gasicomitatum LMG 18811] Length = 283 Score = 37.8 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%) Query: 211 DLRTWERGVGLTAACGSAACASVVASGCLHKTN-RAVSVKMLGGGLLIEWHDNNHVFM 267 + CG A + L+K + +++ G L IE + VFM Sbjct: 57 FCLEYFTPTEEVPLCGHATIGTFAILNLLNKLSKNNYTIETKSGVLSIEVDPDGMVFM 114 >gi|297622131|ref|YP_003710268.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU 86-1044] gi|297377432|gb|ADI39262.1| Phenazine biosynthesis-like protein [Waddlia chondrophila WSU 86-1044] Length = 284 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 70/236 (29%), Gaps = 18/236 (7%) Query: 56 QDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS-----FTFETIRGILVAKE 110 + D +R G E++ CG+ + + K F ET G++ + Sbjct: 53 PSETADFKLRYFTPTGDEIRFCGHATIGAMSAMEQDGWVKHGEKKKFRAETNAGVINLEI 112 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 + E + L P S + +D P+ R + ++ + + Sbjct: 113 DCTAGKPSFNFE-SPEVNLEPFTVSLEPLDFPDVIASPMIETGNRYLY-LAFKDLETLGG 170 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + ++ L + + + GV GS Sbjct: 171 LRPNMDEVK----QYCLEHEIVMICALTPFAIDPKNHVHARAFGPAVGVNEDPFTGSMQG 226 Query: 231 ASVVASGCLHKTNRAVS-VKMLGGGLL-----IEWHDNNHVF-MTGEAKKEWEGKL 279 N +++ + G L ++ +++++ + EA ++ ++ Sbjct: 227 GLFGYCRETGLINPSLTSIYTEQGHFLGRPGYVKIDYDDNIYRLYAEATPVFKTEM 282 >gi|293609585|ref|ZP_06691887.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828037|gb|EFF86400.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 289 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 81/286 (28%), Gaps = 43/286 (15%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +++D +TS+ + A++ N + + D+ D +RI SE+ Sbjct: 24 VIMDAST----LTSEQMQAIANWTN------LSETTFVLPATDSQADYQVRIFTP-QSEL 72 Query: 75 QSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPL 132 G +K K G + S + P K+ PL Sbjct: 73 PFAGHPTIGTAYALLEAGLIKAKEGKLVQQCGAGLVTLTVSESSHISFELPK--PKITPL 130 Query: 133 ARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPM 192 I N +V +G + + + A Sbjct: 131 DA---MHTEKLAEILKCEINTQWNAALVDVGARWIVLQA---VNAEAVLDSQPDFAALKE 184 Query: 193 FSEGVNLS--IARVTSLESLDLRTWER-------GVGLTAACGS--AACASVVASGCLHK 241 + ++ + + + E G+ CGS + AS + + Sbjct: 185 HDLEMKVTGATVFGFHENNDEQKHIEVRSFAPSCGINEDPVCGSGNGSVASFIRYYGILP 244 Query: 242 TNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281 V + G G L +E + + + + G A +G + + Sbjct: 245 AQNDVVLSSQGGAVGRDGQLQLELYQD-KILVGGTAVTCIDGTIKL 289 >gi|255100898|ref|ZP_05329875.1| hypothetical protein CdifQCD-6_08804 [Clostridium difficile QCD-63q42] gi|255306788|ref|ZP_05350959.1| hypothetical protein CdifA_09357 [Clostridium difficile ATCC 43255] Length = 260 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 72/228 (31%), Gaps = 20/228 (8%) Query: 57 DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSI 116 + +R +E+ CG+ +++ + + + R+G++ Sbjct: 50 KGKGNYELRWFTP-KAEIDLCGHATLAAAYVISNFIDVNVKRIDFFTQSGKLEVTRNGNL 108 Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 + +++P+ + P R+ ++ I + Sbjct: 109 YEMIF-----PEIMPIEIELSPQQANLIGCVPSAVYSSRDLILLLNSEQEVINYKP---N 160 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVAS 236 + L + L + A+ ++ + + GS+ C + Sbjct: 161 YAQLRKLTDWL---------GIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYW 211 Query: 237 GCLHKTNRAVSVKM--LGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 ++ V+ ++ GG + E +N V ++GEA +G + I Sbjct: 212 SEKLGKHKMVAAQLSNRGGIIQCEVLKDNTVKISGEAVLFMQGTIKID 259 >gi|229018451|ref|ZP_04175313.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1273] gi|229024707|ref|ZP_04181146.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1272] gi|228736550|gb|EEL87106.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1272] gi|228742803|gb|EEL92941.1| Phenazine biosynthesis protein phzF [Bacillus cereus AH1273] Length = 293 Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 39/194 (20%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 59 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 117 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + + + ++ D D + + + Sbjct: 118 DMIFMEQNKPIFYDVVSPNEFIDCFDIKAIDNTYPIQIVSTGLKDILIPIKSETRLHALQ 177 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 L + M N + + L + AA G++ A Sbjct: 178 LNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 231 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 232 YLYEQHYLQKEVYV 245 >gi|126651765|ref|ZP_01723967.1| Phenazine biosynthesis protein phzF [Bacillus sp. B14905] gi|126591443|gb|EAZ85550.1| Phenazine biosynthesis protein phzF [Bacillus sp. B14905] Length = 284 Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 22/194 (11%), Positives = 36/194 (18%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 D EV CG+ L K + V Sbjct: 51 SASEMADYKFEYFTP-KEEVDLCGHATIGSFTILMHFNKLFKDRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + +I D +D + + + Sbjct: 110 DIIFMEQNKPKFYDVISPNEFIDCIDSKAIDNQYPIQIVSTGLKDILIPIISETQLHALQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + L + AA G++ A Sbjct: 170 PNFEKIKEISEYYHVVGMHVYTFNDDRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 224 YLYEQHHLQKEVYV 237 >gi|145353583|ref|XP_001421089.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581325|gb|ABO99382.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 2146 Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 7/200 (3%) Query: 31 TSDAINALSTDDNTHFDQI-MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLT 89 TS+ + N ++D I + I + S + + + C + C F Sbjct: 473 TSNERKECRAETNANYDGIQISIVNAVSWSACCDACLADPACAVWNFCDDVSGCDGEFAY 532 Query: 90 SRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV 149 K F A DG V + +P + + P+ Sbjct: 533 QTCVLKLFLVGGDPQKPPAIARGDGVPWVSGSLVDRIPEPVPSIEGCRVEENANYKGHPL 592 Query: 150 NHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES 209 N + VV + + + + + + S E Sbjct: 593 NS---GSDLVVDSETECCAECKKMKKCNAWVFCASIDGCGNEYYDYKFGECWLKKLSKED 649 Query: 210 ---LDLRTWERGVGLTAACG 226 + + WERG +T G Sbjct: 650 VETIPVPAWERGENVTWTSG 669 >gi|228939398|ref|ZP_04101988.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972277|ref|ZP_04132890.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978891|ref|ZP_04139258.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis Bt407] gi|228780848|gb|EEM29059.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis Bt407] gi|228787461|gb|EEM35427.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820293|gb|EEM66328.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939969|gb|AEA15865.1| phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar chinensis CT-43] Length = 336 Score = 37.4 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 102 SESEIADYKFEYFTP-KEEVDLCGHATIGSFTILMHLNKNFKNRYTIETNSGVLTITIKD 160 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 161 DIIFMEQNKPIFYDVVSPNEFIDCFDIKDIDNNYPIQIVSTGLKDILIPIKSETQLHALQ 220 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + + N + + L + AA G++ A Sbjct: 221 PNFEKIKEISKYYNVVGIHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 274 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 275 YLYEQHYLQKEVYV 288 >gi|218234344|ref|YP_002366964.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264] gi|218162301|gb|ACK62293.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus B4264] Length = 287 Score = 37.4 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITITD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + I Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 + V V Sbjct: 226 YLYEQDYLKKEVYV 239 >gi|229190349|ref|ZP_04317350.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 10876] gi|228593133|gb|EEK50951.1| Phenazine biosynthesis protein phzF [Bacillus cereus ATCC 10876] Length = 285 Score = 37.4 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 51 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIENKYPIQIVSTGLKDILIPIKSETQLHALQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 224 YLYEQHYLQKEVYV 237 >gi|20466358|gb|AAM20496.1| putative protein [Arabidopsis thaliana] Length = 294 Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 17/242 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 + +R EV C + L S S E + + Sbjct: 55 FLIPITGFQARFSLRWFTPLA-EVDLCDHATLASAHCLFSNGLVDSDMVEFVTRSGILT- 112 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFF 170 +S + K + + + ++ I Sbjct: 113 --AKRVSDTSELSDGEVKGGTFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIVDIKA 170 Query: 171 VEDDLYHYDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWER------GVG 220 + + L S ++ P + + I + R GV Sbjct: 171 TATNNFLVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAPKFGVD 230 Query: 221 LTAACGSAACASVVA-SGCLHKTNRAV-SVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 CGSA CA S ++K + G + I + V + G+A EG Sbjct: 231 EDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAVTVMEG 290 Query: 278 KL 279 + Sbjct: 291 HV 292 >gi|184158813|ref|YP_001847152.1| epimerase PhzC/PhzF [Acinetobacter baumannii ACICU] gi|332875183|ref|ZP_08443016.1| phenazine biosynthesis protein, PhzF family [Acinetobacter baumannii 6014059] gi|183210407|gb|ACC57805.1| predicted epimerase, PhzC/PhzF [Acinetobacter baumannii ACICU] gi|322507374|gb|ADX02828.1| epimerase, PhzC/PhzF [Acinetobacter baumannii 1656-2] gi|323518728|gb|ADX93109.1| epimerase, PhzC/PhzF [Acinetobacter baumannii TCDC-AB0715] gi|332736627|gb|EGJ67621.1| phenazine biosynthesis protein, PhzF family [Acinetobacter baumannii 6014059] Length = 289 Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 71/245 (28%), Gaps = 19/245 (7%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM----KRKSFTFETIRGIL 106 + D+ D +RI SE+ G+ L K + G++ Sbjct: 50 FVLPATDSHADYQVRIFTP-QSELPFAGHPTIGTAYALLEAGLVTAKGGKLVQQCGAGLV 108 Query: 107 VAKENRDGSISVDMGEPILDW-KLIPLARSFDKMDRD-RFHIGPVNHLFLRNPFVVSMGN 164 + IS ++ +P + I + + + + V+ N Sbjct: 109 TLTVSDSKHISFELPQPKITPLDAIHTEKLVEILKCEINTQWNATLVDVGARWVVLQAVN 168 Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 A+ + D + +F N + + S G+ Sbjct: 169 AEAVLATQPDFAALKQHDLEMKVTGATVFGFYENNDEQKHIEVRSFAPSC---GINEDPV 225 Query: 225 CGS--AACASVVASGCLHKTNRAVSVKMLG------GGLLIEWHDNNHVFMTGEAKKEWE 276 CGS + AS + + V G G L +E + + + + G A + Sbjct: 226 CGSGNGSVASFIRYHGILPAQNDVVFSSQGQALGRDGQLKLELYQD-KILVGGTAVTCID 284 Query: 277 GKLDI 281 G + + Sbjct: 285 GSITL 289 >gi|304408425|ref|ZP_07390071.1| phenazine biosynthesis protein PhzF family [Paenibacillus curdlanolyticus YK9] gi|304342610|gb|EFM08458.1| phenazine biosynthesis protein PhzF family [Paenibacillus curdlanolyticus YK9] Length = 293 Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 60/246 (24%), Gaps = 21/246 (8%) Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKE 110 D IR G E+ CG+ + L +R + T ET GIL + Sbjct: 51 PLPSDRADWRIRFFTP-GHEISLCGHATMATIYALKTRGLLGDLTTLTIETKAGILSIQL 109 Query: 111 NRDG---SISVDMGEPILDW-----KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + I++ P + A D+ D + Sbjct: 110 DEREEGLFITMQQAAPQFASFNGSIAQLAYAMGIDQEDIATELPVVYGSTGTWTLIIPVK 169 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLT 222 G + + + HP E + A Sbjct: 170 GLAACERMKPRNELFPSVLEEMPRASLHPFCLETYDP--AAHMHARHFSSPFSGTIEDPV 227 Query: 223 AACGSAACASVVASGCLHKTNR--AVSVKM-----LGGGLLIEWHDNNHVFMTGEAKKEW 275 S + A + + V+ G + + + + + G A Sbjct: 228 TGTASGVMGAYYAKYIQQGQDALFQLRVEQGQEIGRDGRVDVTVANGTGITIRGNAVYVN 287 Query: 276 EGKLDI 281 E ++ I Sbjct: 288 EFEVSI 293 >gi|7513163|pir||JE0352 mucin MUC5B, tracheobronchial - human gi|3789927|gb|AAC67545.1| mucin [Homo sapiens] Length = 1321 Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 41/199 (20%), Gaps = 24/199 (12%) Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 C + + T A+ +D + P I + Sbjct: 320 RCPELCPRTCTNMQHQNCGSPCTDTCSN-PQRAQLCKDHCVDRCFCPPGTVLDNITHSGC 378 Query: 136 FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSE 195 H G S + DL Sbjct: 379 LPLGQCPCTHGGTRYSPGTSFNTTCSSCTCSGGLWQCQDL----------------PCPG 422 Query: 196 GVNLSIARVTSLESLDLRTWERGVGLTAA--CGSAACASVVASGCLHKTNRA-----VSV 248 ++ S L + C ++ + G T+ V++ Sbjct: 423 TCSVQGGAHISTYDEKLYDLHGDCSYVLSKKCADSSFTVLAELGRCGLTDNENCLKAVTL 482 Query: 249 KMLGGGLLIEWHDNNHVFM 267 + GG I + VF+ Sbjct: 483 SLDGGDTAIRVQADGGVFL 501 >gi|290956209|ref|YP_003487391.1| long chain fatty acid-CoA ligase [Streptomyces scabiei 87.22] gi|260645735|emb|CBG68826.1| putative long chain fatty acid-CoA ligase [Streptomyces scabiei 87.22] Length = 608 Score = 37.1 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 8/56 (14%) Query: 225 CGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 C +AA A+ R + G + + D+ +++ G ++G L+ Sbjct: 390 CTAAATANPPERTRYGTVGRPI----PG--VSVHIADDGEIWLRGP--NVFQGYLN 437 >gi|209516128|ref|ZP_03264987.1| phenazine biosynthesis protein PhzF family [Burkholderia sp. H160] gi|209503412|gb|EEA03409.1| phenazine biosynthesis protein PhzF family [Burkholderia sp. H160] Length = 348 Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 75/283 (26%), Gaps = 36/283 (12%) Query: 19 LVIDMRGCHDNITSDAINALSTDDNTHFDQIM----LIHDFQDASVDAFIRIINCDGSEV 74 +V D D + + + A++ N + + DA+ D +RI G Sbjct: 75 VVFDA----DALDTAQMQAIARWTN------LSETTFLLKPTDAAADYRVRIFTPGGELP 124 Query: 75 QSCGNGMRCVVRFLTSRMKRKSF-TFETIRGILVAKENRDGSISVDMGEPILDWKLIPLA 133 + + S K G+ + + G + Sbjct: 125 FAGHPTLGTAHALRESGYHPKQAGRLIQQCGVGLVELKALDGADSAHGAWAFAAPPARVT 184 Query: 134 RSFDKMDRDRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVED-------DLYHYDLASFGN 185 + + + F P V G P + V+ + LA + Sbjct: 185 PLAEHRYKALTTALRSQSIDFSAPPCAVDNGAPWLVVRVDSARTCLALEPDAAALAELVH 244 Query: 186 LLAKH---PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHK- 241 + H + + G G GSA A + Sbjct: 245 SVDTHGVAVYGPHDADGPATFEV---RCLMAGSGFGTGEDPVTGSANAALAGLLNLQQRR 301 Query: 242 -----TNRAVSVKMLGGGLLIEWHDN-NHVFMTGEAKKEWEGK 278 T R +V G + + + D+ + +++ G + +G Sbjct: 302 PGARYTARQGTVLGRAGDVSVHYDDSRDKIWIGGPSVTIVDGT 344 >gi|229150489|ref|ZP_04278705.1| Phenazine biosynthesis protein phzF [Bacillus cereus m1550] gi|228632982|gb|EEK89595.1| Phenazine biosynthesis protein phzF [Bacillus cereus m1550] Length = 287 Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESELADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITITD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + I Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDSKDIDNKYPIQIVSTGLKDILIPIKSEIQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 + V V Sbjct: 226 YLYEQDYLKKEVYV 239 >gi|228952607|ref|ZP_04114683.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079435|ref|ZP_04211976.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-2] gi|229178634|ref|ZP_04305998.1| Phenazine biosynthesis protein phzF [Bacillus cereus 172560W] gi|228604792|gb|EEK62249.1| Phenazine biosynthesis protein phzF [Bacillus cereus 172560W] gi|228703892|gb|EEL56337.1| Phenazine biosynthesis protein phzF [Bacillus cereus Rock4-2] gi|228807073|gb|EEM53616.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 285 Score = 37.1 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 51 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIENKYPIQIVSTGLKDILIPIKSETQLHALQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 + V V Sbjct: 224 YLYEQDYLKKEVYV 237 >gi|228928521|ref|ZP_04091560.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228831126|gb|EEM76724.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 285 Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 43/196 (21%), Gaps = 11/196 (5%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVR--FLTSRMKRKSFTFETIRGILVAKENR 112 + D EV CG+ +++ R +T ET G+L Sbjct: 51 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109 Query: 113 DGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVE 172 D D + D D + + + Sbjct: 110 DSIFMEQNNPIFYDA--VSPNEFIDCFDMKAIDNKYPIQIVSTGLKDILIPIKSETRLHA 167 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232 L + M N + L + AA G++ A Sbjct: 168 LQLSFEKIKEISKYYNVVGMHLYTFNDDRIICRNFAPLY------DINEEAATGTSNGAL 221 Query: 233 VVASGCLHKTNRAVSV 248 H + V V Sbjct: 222 ACYLHEQHNLQKEVYV 237 >gi|255101113|ref|ZP_05330090.1| hypothetical protein CdifQCD-6_09919 [Clostridium difficile QCD-63q42] Length = 304 Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 66/281 (23%), Gaps = 25/281 (8%) Query: 24 RGCHDNITSDAINALSTDDNTHFDQIML--IHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 D ++ + ++ + N + + + D IR +EV CG+ Sbjct: 26 ITNADGLSESQMQKIARELNNSETAFIFNNLAKNHQENYDVHIRFFTP-TNEVPICGHAT 84 Query: 82 RCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141 + + T G + + + +P R Sbjct: 85 IAAHYVRAVENQFNNKTVFQKTGAGILPVDIIKKDNDYEIIMTQGKIEVPPPLQQTYQKR 144 Query: 142 DRFHIG-PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLS 200 G + P +S + +L + S N Sbjct: 145 LLNAFGILKKDIRTDCPIAISSTGHSKVMIGIKELSTLNSLSPNLYELSKISQEIKCNGH 204 Query: 201 IARVTSLESLDLRTWER------GVGLTAACGSAACASVVASGCLHKTNRAVS------- 247 L+ R G+ G+A + Sbjct: 205 YIFTL-HNKETLQVHGRMFAPAIGISEDPVTGNANGPLGAYLVHYKVIPTPNTEFIFEAV 263 Query: 248 ----VKMLGGGL-LIEWHDNNHVF--MTGEAKKEWEGKLDI 281 +K G L + DN V + G+A + ++I Sbjct: 264 QGEAIKRKGKMLVKVIILDNKPVEVKIIGKAVIAFSTNIEI 304 >gi|183598974|ref|ZP_02960467.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827] gi|188021191|gb|EDU59231.1| hypothetical protein PROSTU_02419 [Providencia stuartii ATCC 25827] Length = 316 Score = 37.1 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 57/198 (28%), Gaps = 9/198 (4%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSC-GNGMRCVVRFLTSRMKRKSFTFETIRGILVAK 109 L+ Q+ A + N +G G + T ET G + A Sbjct: 67 LLCKPQNPQATAGVIFFNNEGYLGMCGHGTIGLIASLAYLGTITVGEHTIETPVGDVQAT 126 Query: 110 ENRDGSISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + DGS+S+ K + + + D G L ++P + N A+ Sbjct: 127 LHPDGSVSIQNVYSYRYRKSVAVKVPDVGMVTGDIAWGGNWFFLVEQSPVEIHHRNTKAL 186 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL--RTWERGVGLTAACG 226 + + + + + ++ S + ++R CG Sbjct: 187 TETCLKIKAALVEQHIYGKDDQEIDHIELFAASSQADSQSFVLCPGGAYDRSP-----CG 241 Query: 227 SAACASVVASGCLHKTNR 244 + A + K N Sbjct: 242 TGTSAKLACLAADGKLNE 259 >gi|255655939|ref|ZP_05401348.1| hypothetical protein CdifQCD-2_09619 [Clostridium difficile QCD-23m63] gi|296450639|ref|ZP_06892392.1| possible phenazine biosynthesis protein [Clostridium difficile NAP08] gi|296879243|ref|ZP_06903238.1| possible phenazine biosynthesis protein [Clostridium difficile NAP07] gi|296260483|gb|EFH07325.1| possible phenazine biosynthesis protein [Clostridium difficile NAP08] gi|296429786|gb|EFH15638.1| possible phenazine biosynthesis protein [Clostridium difficile NAP07] Length = 306 Score = 36.7 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 74/284 (26%), Gaps = 29/284 (10%) Query: 24 RGCHDNITSDAINALSTDDNTHFDQIML--IHDFQDASVDAFIRIINCDGSEVQSCGNGM 81 D ++ + ++ + N + + + D IR +EV CG+ Sbjct: 26 ITNADGLSESQMQKIARELNNSETAFIFNKLAKNHQENYDVHIRFFTP-TNEVPICGHAT 84 Query: 82 RCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDR 141 + + T G + + + E I+ I ++ + + Sbjct: 85 IAAHYVRAVENQLNNKTVFQKTGAGILPVDIIKK--DNDYEIIMTQGKIEVSPPLQQTYQ 142 Query: 142 DRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVN 198 +R + P +S + +L + S N Sbjct: 143 ERLLNAFGILKEDIRTDCPIAISSTGHSKVMIGIKELSTLNSLSPNLYELSKISQEIKCN 202 Query: 199 LSIARVTSLESLDLRTWER------GVGLTAACGSAACASVVASGCLHKTNRAVS----- 247 + L+ R G+ G+A + Sbjct: 203 GYYIFTLHDKET-LQVHGRMFAPAIGISEDPVTGNANGPLGAYLVHYKVIPIPNTEFIFE 261 Query: 248 ------VKMLGGGL-LIEWHDNNHVF--MTGEAKKEWEGKLDIK 282 +K G L + DN V + G+A + ++I+ Sbjct: 262 AVQGEAIKRKGKMLVKVIISDNKPVEVKIIGKAVIAFSTNIEIE 305 >gi|229069793|ref|ZP_04203076.1| Phenazine biosynthesis protein phzF [Bacillus cereus F65185] gi|228713328|gb|EEL65220.1| Phenazine biosynthesis protein phzF [Bacillus cereus F65185] Length = 285 Score = 36.7 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 51 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIENKYPIQMVSTGLKDILIPIKSETQLHALQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 + V V Sbjct: 224 YLYEQDYLKKEVYV 237 >gi|330447702|ref|ZP_08311350.1| phenazine biosynthesis-like domain-containing protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491893|dbj|GAA05847.1| phenazine biosynthesis-like domain-containing protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 269 Score = 36.7 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 26/232 (11%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKS---FTFETIRGILVAKENRDGSIS 117 D +R +EV+ CG+G V L R + KS F+T+ G L A N +I Sbjct: 54 DMTLRWFTP-KAEVKLCGHGTLAVAHVLKERGQVKSGDSVNFKTLSGTLTALINES-TIE 111 Query: 118 VDMGEPILDWKLIPLARSF-DKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176 +D P+++ IP ++ D + + ++ + V Sbjct: 112 LDFPSPVIEC-DIPQSQELLDNLGLEESNVRFFGGFETKVFIEVD--------------S 156 Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER---GVGLTAACGSAACASV 233 L + L + S E + + GV GSA CA Sbjct: 157 EETLLNIQPNFEAMKQRKGRGVLVTTQSKSNEFDFISRYFAPWVGVNEDPVTGSAHCALT 216 Query: 234 VA-SGCLHKTNRA-VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKT 283 V S L K + GG + E N + G A +G + + Sbjct: 217 VYWSEKLGKLDFKGYQASERGGHVATELLSNGRTKLIGAAVTVIKGVMQVSA 268 >gi|228908030|ref|ZP_04071879.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL 200] gi|228851627|gb|EEM96432.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL 200] Length = 285 Score = 36.7 bits (83), Expect = 4.5, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 51 SESEIADYKFEYFTP-KEEVDLCGHATIGSFTILMHLNKIFKNRYTIETNSGVLAITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDIKDIDNNYPIQIVSTGLKDILIPIKSETQLHTLQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 224 YLYEQHYLQKEVYV 237 >gi|170085727|ref|XP_001874087.1| predicted protein [Laccaria bicolor S238N-H82] gi|164651639|gb|EDR15879.1| predicted protein [Laccaria bicolor S238N-H82] Length = 295 Score = 36.7 bits (83), Expect = 4.5, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 65/247 (26%), Gaps = 23/247 (9%) Query: 51 LIHDFQ-----DASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGI 105 I Q D + IR +G EV CG+ + L S+ R S + Sbjct: 52 FIGPSQLSAENDTTAVYDIRYFAANGVEVSLCGHATLASAKVLFSQTGRASISVLQFHTP 111 Query: 106 LVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNP 165 + L+ K + N S Sbjct: 112 SEGVVAAKKVDGGLVEIEFPTGTTTKLSEE-QKSRIIPLINKAFGREVVINYLGASGPPY 170 Query: 166 HAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTA-- 223 +E D +LA +N +S + R T Sbjct: 171 EHALLIELD-EKENLAECKVDAEAFRDTGYIINTVTTASSSGNESFVS---RMFSPTMIP 226 Query: 224 -----ACGSAACASVVASGCLHKT--NRAVS---VKMLGGGLLIEWHD-NNHVFMTGEAK 272 CGSA C + +++ V + GG LL+ W + + + GEA Sbjct: 227 GGEDPVCGSAHCVLTPYWYQKQRIASGKSIKAKQVSVRGGDLLLTWDEAAKSIKLVGEAI 286 Query: 273 KEWEGKL 279 G L Sbjct: 287 VIGVGHL 293 >gi|206971531|ref|ZP_03232481.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH1134] gi|206733516|gb|EDZ50688.1| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH1134] Length = 285 Score = 36.3 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 51 SESELADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFIDCFDSKDIDNKYPIQIVSTGLKDILIPIKSETQLHALQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 + V V Sbjct: 224 YLYEQDYLKKEVYV 237 >gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977] gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family protein?) [Mycobacterium abscessus] Length = 226 Score = 36.3 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 220 GLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEA-KKEWEGK 278 +++A S A++ A+ + + V+V + GG + + V +TG A EG Sbjct: 140 AVSSANVSGRPAALTAAEARGQLDDKVAVYLDGGQAELG-AASTIVDLTGPAPVIVREGP 198 Query: 279 L 279 + Sbjct: 199 I 199 >gi|303325526|ref|ZP_07355969.1| PE-PGRS family protein [Desulfovibrio sp. 3_1_syn3] gi|302863442|gb|EFL86373.1| PE-PGRS family protein [Desulfovibrio sp. 3_1_syn3] Length = 287 Score = 36.3 bits (82), Expect = 5.4, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 221 LTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-LLIEWHDNNHVFMT---GEAKKEWE 276 L ++CGS A A ++ R S+ GG L + + + G Sbjct: 219 LESSCGSGALALALSLSRAGG-RRDFSIMQPGGSALDVRLFNEGEERLAAVDGPVSLVAR 277 Query: 277 GKL 279 G++ Sbjct: 278 GQV 280 >gi|221115133|ref|XP_002160657.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 663 Score = 36.3 bits (82), Expect = 5.4, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 53/218 (24%), Gaps = 10/218 (4%) Query: 17 KILVIDMRGCHDNITSDAINALSTDDNTHFDQ------IMLIHDFQDASVDAFIRIINCD 70 + ++ + +D D+ D + +++ DA I + Sbjct: 329 DFICLNFIDLPEGYDTDETRKFIRDNILGKDNRELAANVEVMNFLAKVGPDALINTFTVN 388 Query: 71 ---GSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDW 127 SE C + L + + G + S + E + Sbjct: 389 IKGNSETHLCNQLQDIIFSELNGMKLFTFISLKGSLGDVPTHHCFIVSGKMLDDENKIFL 448 Query: 128 KLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY-HYDLASFGNL 186 IP + VN + + + ++ L Sbjct: 449 DYIPTFADKSHQYNVVLTMKAVNETEKIKFIESCNTDSTYVCKTKYEMTIMDFLRKTSKH 508 Query: 187 LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA 224 ++ G + + L ++ +E +A Sbjct: 509 GITMELYKYGADGTALCAVDLTVDEVFRYEHLENPKSA 546 >gi|218897234|ref|YP_002445645.1| phenazine biosynthesis protein PhzF [Bacillus cereus G9842] gi|218544634|gb|ACK97028.1| phenazine biosynthesis protein PhzF [Bacillus cereus G9842] Length = 287 Score = 36.3 bits (82), Expect = 5.4, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKIFKNRYTIETNSGVLTITITD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 226 YLYEQHYLQKEVYV 239 >gi|228920978|ref|ZP_04084315.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838672|gb|EEM83976.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 285 Score = 36.3 bits (82), Expect = 5.4, Method: Composition-based stats. Identities = 20/194 (10%), Positives = 37/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 51 SESELADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKLFRNRYTIETNSGVLTITIKD 109 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 110 DIIFMEQNKPIFYDVVSPNEFTDCFDSKNIENKYPIQIVSTGLKDILIPIKSETQLHALQ 169 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 170 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 223 Query: 235 ASGCLHKTNRAVSV 248 + V V Sbjct: 224 YLYEQDYLKKEVYV 237 >gi|75761107|ref|ZP_00741102.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900856|ref|ZP_04065071.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL 4222] gi|74491399|gb|EAO54620.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858782|gb|EEN03227.1| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL 4222] Length = 287 Score = 36.3 bits (82), Expect = 5.4, Method: Composition-based stats. Identities = 21/194 (10%), Positives = 38/194 (19%), Gaps = 7/194 (3%) Query: 55 FQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDG 114 + D EV CG+ L K + V Sbjct: 53 SESEIADYKFEYFTP-KEEVDLCGHATIGSFAILMHLNKIFKNRYTIETNSGVLTITITD 111 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 I + + ++ D D + + + Sbjct: 112 DIIFMEQNKPIFYDVVSPNEFTDCFDIKDIDNKYPIQIVSTGLKDILIPIKSETQLHALQ 171 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + M N + + L + AA G++ A Sbjct: 172 PNFEKIKEISKYYNVVGMHLYTFNDNRIICRNFAPLY------DINEEAATGTSNGALAC 225 Query: 235 ASGCLHKTNRAVSV 248 H + V V Sbjct: 226 YLYEQHYLQKEVYV 239 >gi|326671568|ref|XP_001920779.3| PREDICTED: receptor-type tyrosine-protein phosphatase gamma [Danio rerio] Length = 1443 Score = 36.3 bits (82), Expect = 5.6, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 51/191 (26%), Gaps = 10/191 (5%) Query: 16 NKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGSEVQ 75 N+ ++ + + T D + + QI+++ + E Sbjct: 1216 NEFII--TQHPLPHTTKDFWRMIWDHNA----QIIVMLPDNQGLAEDEFVYW-PSREEAM 1268 Query: 76 SCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPILDWKLIPLARS 135 +C + IL A ++ P P++ + Sbjct: 1269 NC-EAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISST 1327 Query: 136 FDKMDRDRFHIGPVNHLFL--RNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMF 193 F+ ++ + + + VS G A+ + L A + + Sbjct: 1328 FELINVIKEEAMTRDGPTIVHDEFGAVSAGMFCALTTLSQQLESEGAAGVYQVAKMINLM 1387 Query: 194 SEGVNLSIARV 204 GV I + Sbjct: 1388 RPGVFTDIEQY 1398 >gi|239980197|ref|ZP_04702721.1| putative long chain fatty acid:CoA ligase [Streptomyces albus J1074] gi|291452051|ref|ZP_06591441.1| acyl-CoA synthetase [Streptomyces albus J1074] gi|291355000|gb|EFE81902.1| acyl-CoA synthetase [Streptomyces albus J1074] Length = 650 Score = 36.3 bits (82), Expect = 5.7, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 250 MLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNED 292 + GG + I D+ V + G + G D ++G+ + D Sbjct: 452 LPGGRVKI--ADDGEVLLGGG--HVFSGYWDAESGEITRGPVD 490 >gi|294655575|ref|XP_457731.2| DEHA2C01166p [Debaryomyces hansenii CBS767] gi|199430435|emb|CAG85759.2| DEHA2C01166p [Debaryomyces hansenii] Length = 297 Score = 36.3 bits (82), Expect = 5.7, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 65/205 (31%), Gaps = 13/205 (6%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCG--NGMRCVVRFLTSRMKRKSFTFETIRGILVA 108 + + D +RI +E+ G C + ++ KS G + Sbjct: 51 FVLKTTNKDADYKLRIFTP-KNELPFAGHPTIGSCFALIESGLIQPKSGKLIQECGAGLV 109 Query: 109 KENRDGSISVD------MGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSM 162 + + G +S+ P I + + + G + + +P ++ + Sbjct: 110 EISVGGDVSIPKNLILSFRLPYFHITPIDTSVHLELESALKISSGFCSK--IASPVLLDV 167 Query: 163 GNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER--GVG 220 G + + + +L +A+ F + + + + R++ GV Sbjct: 168 GPKWLTIQLVEGIDVINLEPNYTEIARLSNFYGWTGIEVFGKHEDGTYESRSFAPVIGVN 227 Query: 221 LTAACGSAACASVVASGCLHKTNRA 245 ACGS A A V + + Sbjct: 228 EDPACGSGAGALGVYLSSISAKDTK 252 >gi|328876777|gb|EGG25140.1| ubiquitin ligase E3 alpha [Dictyostelium fasciculatum] Length = 1884 Score = 36.3 bits (82), Expect = 5.9, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 8/122 (6%) Query: 176 YHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235 + + A + DL +R + CGS CAS + Sbjct: 1723 ELSTIQREDIEYFHIIPLPNNYDDIFACNIKCKRCDLVPSKRDQVVCLLCGSMVCASAMC 1782 Query: 236 SGCLHKTNRAVSVKML--GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTGKWIKKNEDD 293 + V+ GG + + + + +T ++G + ++ + ++ Sbjct: 1783 CREQNG-EGEVTTHSRKCGGDIGVYVLVEHSIVLT-----FFDGCIGFIGSSYLDAHGEE 1836 Query: 294 EA 295 +A Sbjct: 1837 DA 1838 >gi|296110862|ref|YP_003621243.1| putative epimerase [Leuconostoc kimchii IMSNU 11154] gi|295832393|gb|ADG40274.1| putative epimerase [Leuconostoc kimchii IMSNU 11154] Length = 299 Score = 36.3 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 67/253 (26%), Gaps = 25/253 (9%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTF--ETIRGILVA 108 I + + D +R EV CG+ S T ET GIL Sbjct: 50 FICKSEKYNADMRVRFFTPTT-EVPICGHATIGAQYAYAVEHDLDSQTIQQETQIGILPV 108 Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168 + ++ + PL ++ + N L P ++ + Sbjct: 109 EIIKEEDDYKIIMTQGEVSVEEPLKEAYVVSILKALKLN-KNDLIPEAPIAIASTGHSKV 167 Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLT 222 + L K N +L + L R G+ Sbjct: 168 MIGISSNNTLNHLQPNFELLKEISKEINCNGFHVFTVNLGNDPL-IHGRVFAPISGINED 226 Query: 223 AACGSAACASVVASGCLHKT---NRAVSVK-MLG------GGLLIEWH-DNN---HVFMT 268 G+A + ++ + G G + + +N V +T Sbjct: 227 PVTGNANGPLGAYLVKYNLVTTNGSSLEFNAVQGEAMNRTGKMGVHVDIENGAPVKVQIT 286 Query: 269 GEAKKEWEGKLDI 281 G A + K+++ Sbjct: 287 GTANIAFRTKIEL 299 >gi|75908714|ref|YP_323010.1| Rieske (2Fe-2S) protein [Anabaena variabilis ATCC 29413] gi|75702439|gb|ABA22115.1| Rieske (2Fe-2S) region [Anabaena variabilis ATCC 29413] Length = 359 Score = 35.9 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 49/199 (24%), Gaps = 8/199 (4%) Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVD 119 DA+ + E GN +RC + L K ++ Sbjct: 64 CDAYCPHMGAHLGEGTVEGNELRCAFHHWKFNADGICVEIPCLDEPLSLKLKTWPTVEKY 123 Query: 120 MGEPILDWKL----IPLARSFDKMDRDRFHIGPVN---HLFLRNPFVVSMGNPHAIFFVE 172 I ++ +P + D + H L + + ++ Sbjct: 124 GIIWIWTGEIPRESVPFVPELEFQDYEAVLGSSFVINCHPHLIMLNAIDTQYFQGVQVLD 183 Query: 173 DDLYHYDLASFGNLLAKHPMFSEGVNLS-IARVTSLESLDLRTWERGVGLTAACGSAACA 231 +L + +K+ + + R + + G +T G+ Sbjct: 184 IGFEKQELNQNAIIFSKYKRQYHDLPFKKVFRPLYKNPIYSICYWYGSTVTLTVGTDLRR 243 Query: 232 SVVASGCLHKTNRAVSVKM 250 + V V+ Sbjct: 244 CYLMLALRLIAGEQVEVQT 262 >gi|260683600|ref|YP_003214885.1| hypothetical protein CD196_1864 [Clostridium difficile CD196] gi|260687260|ref|YP_003218394.1| hypothetical protein CDR20291_1907 [Clostridium difficile R20291] gi|260209763|emb|CBA63561.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213277|emb|CBE04817.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 251 Score = 35.9 bits (81), Expect = 7.2, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 62/248 (25%), Gaps = 27/248 (10%) Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 + D IR +EV CG+ + + T G + + Sbjct: 7 ENYDVHIRFFTP-TNEVPICGHATIAAHYVRAVENQFNNKTVFQKTGAGILPVDIIKK-- 63 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIG---PVNHLFLRNPFVVSMGNPHAIFFVEDD 174 + E I+ I ++ + + R + P +S + + Sbjct: 64 DNDYEIIMTQGKIEVSPPLQQTYQKRLLNAFGILNEDIRTDCPIAISSTGHSKVMIGIKE 123 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGLTAACGSA 228 L + S N L+ R G+ G+A Sbjct: 124 LSTLNSLSPNLYELSKISQEIKCNGYYIFTL-HNKETLQVHGRMFAPAIGISEDPVTGNA 182 Query: 229 ACASVVASGCLHKTNRAVS-----------VKMLGGGL-LIEWHDNNHVF--MTGEAKKE 274 + +K G L + DN V + G+A Sbjct: 183 NGPLGAYLVHYKVIPIPNTEFIFEAVQGEAIKRKGKMLVKVIISDNKPVEVKIIGKAVIA 242 Query: 275 WEGKLDIK 282 + ++I+ Sbjct: 243 FSTNIEIE 250 >gi|317486579|ref|ZP_07945400.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6] gi|316922179|gb|EFV43444.1| hypothetical protein HMPREF0179_02758 [Bilophila wadsworthia 3_1_6] Length = 291 Score = 35.9 bits (81), Expect = 7.4, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 213 RTWERGVGLTAA---CGSAACASVVASGCLHKTNRAVSVKMLGGG-LLI-----EWHDNN 263 W RG G T A CGS A+ + ++ +S+ GG L + + Sbjct: 197 FVWVRGTGTTYAETACGSGTLAASIVCQGVYGDGGELSLMQPGGEPLRVVPDGAAYPGGW 256 Query: 264 HVFMTGEAKKEWEGKLDIK 282 ++ G ++ G + ++ Sbjct: 257 AAWVGGPVRRIARGDVFVE 275 >gi|229170539|ref|ZP_04298187.1| Uncharacterized isomerase [Bacillus cereus AH621] gi|228612888|gb|EEK70065.1| Uncharacterized isomerase [Bacillus cereus AH621] Length = 306 Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 57/249 (22%), Gaps = 26/249 (10%) Query: 51 LIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKE 110 I ++ D IR EV CG+ + G + Sbjct: 55 FIFKSDNSESDVHIRFFTP-THEVPICGHATIAAHYARAVENSLNTVKVYHKTGAGILPV 113 Query: 111 NRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPV---NHLFLRNPFVVSMGNPHA 167 + + + I+ I + + + N L P + Sbjct: 114 DVINE--DNDYKIIMTQGSISFETVIEGVALENIFTAFNISENDLLEDCPVQIVSTGHSK 171 Query: 168 IFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER------GVGL 221 + + + + L N + D+ R G+ Sbjct: 172 VMIGIKNSELLNQLNPNMDLLIKVSGLINCNGFYVFTMNAPDSDILIHGRMFAPAIGINE 231 Query: 222 TAACGSAACASVVASGCLHKTNRAVSVK----MLG------GGLLIEWH----DNNHVFM 267 G+A ++ + G G + ++ + V + Sbjct: 232 DPVTGNANGPLGAYLIHHRLVKHDNTLFSFKAVQGEAIKRAGIIDVQVKICNQEPEEVRI 291 Query: 268 TGEAKKEWE 276 G A ++ Sbjct: 292 AGNAVIVFK 300 >gi|82915046|ref|XP_728951.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23485651|gb|EAA20516.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 3195 Score = 35.9 bits (81), Expect = 8.1, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 49/180 (27%), Gaps = 8/180 (4%) Query: 54 DFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRD 113 + + + F + + + V C + C++ F + + Sbjct: 2256 NPKKIGTNCFNYNHDNNNNNVCQCVSSN-CMLEENKVCNGHFDNNFCSSCDNRNYYGIEN 2314 Query: 114 GSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED 173 + P + K+I R+ F+ N +NP V + F + Sbjct: 2315 NLYYDEEYIPQENGKIIKTPRNPCNNKDQHFNNSVYN----QNPHNVDNTSNCRCFREQA 2370 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES---LDLRTWERGVGLTAACGSAAC 230 D K + + + + + + +E+ C + AC Sbjct: 2371 QYSENDNNENFMKNGKMKYNNFNNDKCDIKNIHDNNKINNEQKFYEQNNSFQQKCSTCAC 2430 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.126 0.377 Lambda K H 0.267 0.0387 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,045,204,186 Number of Sequences: 14124377 Number of extensions: 86963082 Number of successful extensions: 235083 Number of sequences better than 10.0: 2278 Number of HSP's better than 10.0 without gapping: 2025 Number of HSP's successfully gapped in prelim test: 253 Number of HSP's that attempted gapping in prelim test: 225733 Number of HSP's gapped (non-prelim): 2352 length of query: 296 length of database: 4,842,793,630 effective HSP length: 138 effective length of query: 158 effective length of database: 2,893,629,604 effective search space: 457193477432 effective search space used: 457193477432 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 80 (35.5 bits)