RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase
[Candidatus Liberibacter asiaticus str. psy62]
(296 letters)
>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY,
lanthionine, isomeras; 2.40A {Bacillus anthracis str}
(A:97-293)
Length = 197
Score = 179 bits (455), Expect = 4e-46
Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 14/201 (6%)
Query: 78 GNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDG----SISVDMGEPILDWKLIP 131
GNG+RCV ++ ++ FT ET+ GI+ A+ + +DMG P L IP
Sbjct: 1 GNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIP 60
Query: 132 LARSFD-KMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKH 190
+ + R+ F + F VSMGNPHA+ FV DD+ L + G +L H
Sbjct: 61 MLGEGETPFIRENFLYNNHRYAFT----AVSMGNPHAVIFV-DDVEQAPLTTLGPVLETH 115
Query: 191 PMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKTNRA--VSV 248
MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VVAS K R ++V
Sbjct: 116 EMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITV 175
Query: 249 KMLGGGLLIEWHDNNHVFMTG 269
+ GG L+I W + +V M G
Sbjct: 176 HLAGGDLMIAWTEEGNVLMKG 196
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor
complex, covalently bound inhibitor, isomerase; HET:
ZDP; 1.35A {Haemophilus influenzae} (A:)
Length = 274
Score = 160 bits (406), Expect = 2e-40
Identities = 87/280 (31%), Positives = 127/280 (45%), Gaps = 10/280 (3%)
Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFI 64
+ F+KM G+GN +V+D + T + I L+ FDQ++++ D +D
Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHY 60
Query: 65 RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGE 122
RI N DGSEV CGNG RC RF+ +K + T +G +V D I V+MGE
Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120
Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
PI + IP + DD+ ++
Sbjct: 121 PIWEPAKIP------FTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQ 174
Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234
Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
N V V + GG L+IEW+ + ++MTGEA ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic;
PLP-independenet amino acid racemase,
aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A
{Arabidopsis thaliana} PDB: 3ekm_A* (A:)
Length = 317
Score = 147 bits (372), Expect = 1e-36
Identities = 96/290 (33%), Positives = 136/290 (46%), Gaps = 13/290 (4%)
Query: 3 SSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHF--DQIMLIHDFQDASV 60
+ ++ F K G+GN +++D R + + A D N D ++
Sbjct: 24 TGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPG-VNGT 82
Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSIS 117
D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG +
Sbjct: 83 DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVK 142
Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---- 173
VDMG PIL + +P S +K V N VSMGNPH I F +
Sbjct: 143 VDMGTPILKAQDVPTKLSGNKG-EAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPN 201
Query: 174 -DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACAS 232
+ +L G H MF N V S L +R WERG G T ACG+ ACA
Sbjct: 202 LKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAL 261
Query: 233 VVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G +
Sbjct: 262 VVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 311
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta,
amino-acid biosynthesis, cytoplasm, isomerase, lysine
biosynthesis; 2.60A {Mycobacterium tuberculosis} (A:)
Length = 290
Score = 126 bits (316), Expect = 5e-30
Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 34/296 (11%)
Query: 6 VDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH-FDQIMLIHDFQDASVDAFI 64
+ FAK G N +++ +T+ + AL D ++ + A +
Sbjct: 2 MIFAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVL 61
Query: 65 --------------RIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVA 108
N DGS Q CGNG+R +L + R F ++ G
Sbjct: 62 DSLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPV 121
Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
+ + D+ + + V + V +GNPH
Sbjct: 122 TCHHVEAAYADVSVDMGKANRL-------------GAGEAVVGGRRFHGLAVDVGNPHLA 168
Query: 169 FFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACG 226
L + F +GVN+ + ++ +R ERGVG T +CG
Sbjct: 169 CVDSQLTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSCG 228
Query: 227 SAACASVVASGCLHK-TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
+ A+ VA+ ++V + GG +++ + F+ G + G L
Sbjct: 229 TGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLAD 283
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein
structure initiative, structural genomics, PSI; 1.50A
{Pseudomonas aeruginosa PAO1} (A:)
Length = 288
Score = 124 bits (312), Expect = 1e-29
Identities = 45/288 (15%), Positives = 80/288 (27%), Gaps = 25/288 (8%)
Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
+D FA+ GN + V D D+ A Q I AF
Sbjct: 10 LDVFAERPLTGNGLAVFDDASALDDAAXQAWTR-------ELRQFESIFLLPGDDPRAFR 62
Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSISVDMG 121
I E+ G+ + L + +T + + R GS
Sbjct: 63 ARIFTLEEELPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEX 122
Query: 122 EPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLA 181
+ + + F + N L P VVS G P+ + V +
Sbjct: 123 DQGRAEFGATPDAGTCRWFAEAFSL-SANDLSGHPPRVVSTGLPYLLLPVTA-----EAL 176
Query: 182 SFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLH 240
+ + + + + ++ + RTW+ G+ A GSAA
Sbjct: 177 GRARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYG 236
Query: 241 KTNRAVSVKML-------GGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
R + L ++ + V + G + +L
Sbjct: 237 LAARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLT 284
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria,
structural genomics, PSI, protein structure initiative;
2.30A {Enterococcus faecalis V583} (A:)
Length = 262
Score = 120 bits (300), Expect = 3e-28
Identities = 34/280 (12%), Positives = 70/280 (25%), Gaps = 36/280 (12%)
Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
FA+ GN V + + + ++ ++N + +R
Sbjct: 11 FAEEVFKGNPAAVYVLE---KWLPEAVMQNIAIENNLSETAFTVKEGQ-----SYALRWF 62
Query: 68 NCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSISVDMGEPIL 125
+ E+ CG+ L + ++ F + G L + +
Sbjct: 63 TPER-EIDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKEEYYYLDFPYILPE 121
Query: 126 DWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLASFGN 185
+ + +G +++ +A
Sbjct: 122 RI----------------PILPEYEAALGTKIYEAYLGRDLFFVLKDEE----TVAKITP 161
Query: 186 LLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAA----CGSAACASVVASGCLHK 241
+ GV + + RT+ + + A
Sbjct: 162 DFSALKALDLGVGVIVTASGDSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQT 221
Query: 242 TNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDI 281
T A V GG L E N V + G AK +G+ +
Sbjct: 222 TLSAYQVSPRGGFLTCEV-KENRVIIGGTAKLFAKGEAYL 260
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate
epimerase-like fold, alpha and beta protein class,
structural genomics; HET: MSE; 1.50A {Bacillus
anthracis} (A:)
Length = 299
Score = 113 bits (283), Expect = 3e-26
Identities = 40/308 (12%), Positives = 72/308 (23%), Gaps = 39/308 (12%)
Query: 1 MQSSMVD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
+ D F GN ++ I
Sbjct: 4 INVFHYDAFTNKPNXGNPAGIVLDADGLTEEEXQRIAE-------KVGFNETSFVLSSEV 56
Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR---MKRKSFTFETIRGILVAKENRDGSI 116
D G E CG+G + L R ++ S T ET GIL + + +
Sbjct: 57 AD-IRXRYFTPGYEXDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENG 115
Query: 117 SVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLY 176
+ + A S +++ + L S GN I V++
Sbjct: 116 ETFIKXRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSL-PIVYGSTGNWTVIVPVKNL-- 172
Query: 177 HYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTW---------ERGVGLTAACGS 227
P + + + LE+ D + G G+
Sbjct: 173 -DVCERXKPNNEVFPSVLKEIPNASIHPICLETYDEKVHXHGRHFSSAYAGTIEDPVTGT 231
Query: 228 AACASVVASG---------CLHKTNRAVSVKMLGGGLLIEWHDN-----NHVFMTGEAKK 273
A+ G + + + + + G A
Sbjct: 232 ASGVXGAYYATYVEKDFDHEXELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVY 291
Query: 274 EWEGKLDI 281
E ++ I
Sbjct: 292 VKEFEVLI 299
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine
biosynthesis protein, epimerase, antibiotic biosynthesis
protein, structural genomics; 2.00A {Escherichia coli}
(A:)
Length = 307
Score = 113 bits (282), Expect = 3e-26
Identities = 38/304 (12%), Positives = 77/304 (25%), Gaps = 34/304 (11%)
Query: 1 MQSSMVD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDAS 59
Q VD F GN V+ DN++ + +
Sbjct: 13 PQVYHVDAFTSQPFRGNSAGVVFPA---DNLSEAQMQLI----ARELGHSETAFLLHSDD 65
Query: 60 VDAFIRIINCDGSEVQSCGNGMRCVVRFL--TSRMKRKSFTFETIRGILVAKENRDGSIS 117
D IR EV CG+ + + ++ G +
Sbjct: 66 SDVRIRYFT-PTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDY 124
Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYH 177
E PL + H+ + L V + G+ + ++ +
Sbjct: 125 RISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPE--- 181
Query: 178 YDLASFGNLLAKHPMFSEGVNLS----IARVTSLESLDLRTWERGVGLT--AACGSAACA 231
D+ + L S+ + + D R + +G+ G+A
Sbjct: 182 VDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGP 241
Query: 232 SVVASGCLHKTNRAVSVKML----------GGGLLIEWHDNN----HVFMTGEAKKEWEG 277
+ +V + G + + + V ++G A +
Sbjct: 242 MGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHA 301
Query: 278 KLDI 281
+ I
Sbjct: 302 EWAI 305
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD,
structural genomics, PSI, protein structure initiative;
2.13A {Pseudomonas aeruginosa} (A:)
Length = 318
Score = 110 bits (275), Expect = 2e-25
Identities = 38/316 (12%), Positives = 76/316 (24%), Gaps = 43/316 (13%)
Query: 5 MVDFAKMEGIGNKILVIDMR-GCHDNITSDAINALSTDDNTHFDQIML------------ 51
+ G ++ L + + + +
Sbjct: 5 RIRIIDSHTGGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGA 64
Query: 52 -IHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVA 108
+ D A + N G + CG+G +V L + ET G + A
Sbjct: 65 LLCAPVDPEACAGVIFFNNSG-YLGMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEA 123
Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAI 168
+ DGS+SV + + + G V G A
Sbjct: 124 TLHEDGSVSVRNVPAYRYRRQVSVEVPGIGRVSGDIAWGGN-----WFFLVAGHGQRLAG 178
Query: 169 FFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERGVGLTAA 224
++ Y +A L + +G + + + + + +
Sbjct: 179 DNLDAL-TAYTVAVQQALDDQDIRGEDGGAIDHIELFADDPHADSRNFVLCPGKAYDRSP 237
Query: 225 CGSAACASVV---ASGCLHKTNRAVSVKMLGGGLLIEWHDNN-------------HVFMT 268
CG+ A + A G L ++G + + ++
Sbjct: 238 CGTGTSAKLACLAADGKLLPGQPWRQASVIGSQFEGRYEWLDGQPGGPIVPTIRGRAHVS 297
Query: 269 GEAKKEWEGKLDIKTG 284
EA G
Sbjct: 298 AEATLLLADDDPFAWG 313
>1tm0_A Proline racemase; structural genomics, alpha-beta protein
THAT resembles double-beta barrel; 2.80A {Brucella
melitensis 16M} (A:)
Length = 350
Score = 103 bits (256), Expect = 4e-23
Identities = 30/347 (8%), Positives = 71/347 (20%), Gaps = 55/347 (15%)
Query: 3 SSMVDFAKMEGIGNKILVIDMRGCH--DNITSDAINALSTDDN------------THFDQ 48
+ ++ G VI + ++ D+
Sbjct: 4 TKVIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHV 63
Query: 49 IMLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL------TSRMKRKSFTFETI 102
+L+ +D I G+ CV L + E
Sbjct: 64 NLLVPP-KDPRAQXGFIIXEPAD-TPPXSGSNSICVSTVLLDSGIIAXQEPVTHXVLEAP 121
Query: 103 RGILVAKENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVN-HLFLRNPFVVS 161
GI+ + + + + L D +
Sbjct: 122 GGIIEVEAECRNGKAERISVRNVPSFADRLDAPLDVTGLGTIXVDTAYGGDSFVIVDAAQ 181
Query: 162 MGNPHAIFFVED--DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLD-------- 211
+G + ++ + L + ++S ++T + +
Sbjct: 182 IGMKIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFCQITEPVTREGDVLTGVN 241
Query: 212 LRTWERGVGLTAACGSAACASVVASGC--LHKTNRAVSVKMLGGGLLIEWHDNN------ 263
+ G+ A K K + G D
Sbjct: 242 TVAIRPAKFDRSPTGTGCSARXAVLHAKGQXKAGERFIGKSVLGTEFHCRLDKVLELGGK 301
Query: 264 ---HVFMTGEAKKEWEGKLDIK-----------TGKWIKKNEDDEAY 296
++G A +L + + W + + +
Sbjct: 302 PAISPIISGRAWVTGTSQLXLDPSDPFPHGYRLSDTWPRDELEHHHH 348
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic
region; PHZF enzyme superfamily, double hot-DOG,
structural genomics; 2.05A {Saccharomyces cerevisiae}
(A:)
Length = 300
Score = 101 bits (251), Expect = 1e-22
Identities = 43/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)
Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
F + +GN + VI+ +N S + T+ + + D D +R I
Sbjct: 13 FTEKPFMGNPVAVINFLEIDENEVSQEELQAI-ANWTNLSETTFLFKPSDKKYDYKLR-I 70
Query: 68 NCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGSISVDMGEPI 124
SE+ G+ + S E G + N +G IS
Sbjct: 71 FTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITIN-EGLISFKAPMAD 129
Query: 125 LDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED----DLYHYDL 180
+ + ++K +F P ++ G + VED + +
Sbjct: 130 YESISSEMIADYEKAIGLKFIKPPA---------LLHTGPEWIVALVEDAETCFNANPNF 180
Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGL--TAACGSAACASVVASGC 238
A + ++ + S ++R + + + CGS + A
Sbjct: 181 AMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQE 240
Query: 239 LHKTNRAVSVKM-------LGGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
++K + + + G +L ++ G A +GK+ +
Sbjct: 241 VYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294
>1w61_A B-cell mitogen; racemase, racemase pyridoxal
phosphate-independent, stereo inversion, acid/base
catalysis, homodimer, alpha/beta domains; 2.1A
{Trypanosoma cruzi} PDB: 1w62_A (A:)
Length = 414
Score = 98.1 bits (243), Expect = 1e-21
Identities = 34/321 (10%), Positives = 74/321 (23%), Gaps = 43/321 (13%)
Query: 3 SSMVDFAKMEGIGNKILVIDMRG-CHDNITSDAINALSTDDNTHFDQI------------ 49
M G ++ A ++ + +
Sbjct: 43 KKSFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMF 102
Query: 50 -MLIHDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFL--------TSRMKRKSFTFE 100
+ D + D I ++ G + CG+ V ++ +
Sbjct: 103 GAFLFDPIEEGADLGIVFMDTGG-YLNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLD 161
Query: 101 TIRGILVAKENRDGSISVDMGEPILDWKLIPLARS-FDKMDRDRFHIGPVNHLFLRNPFV 159
T G++ + ++ + L + + + V+ F N F
Sbjct: 162 TPAGLVRGTAHLQSGTESEVSNASIINVPSFLYQQDVVVVLPKPYGEVRVDIAFGGNFFA 221
Query: 160 VSMGNPHAIFFVEDDLYHY-----DLASFGNL--LAKHPMFSEGVNLSIARVTSLESLD- 211
+ I +L L + N +HP + + +
Sbjct: 222 IVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINTVDCVEIYGPPTNPE 281
Query: 212 -----LRTWERGVGLTAACGSAACASVV---ASGCLHKTNRAVSVKMLGGGLLIEW---H 260
+ + + CG+ A + A G L V +LG
Sbjct: 282 ANYKNVVIFGNRQADRSPCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEE 341
Query: 261 DNNHVFMTGEAKKEWEGKLDI 281
V + E +
Sbjct: 342 RIPGVKVPVTKDAEEGMLVVT 362
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein;
1.30A {Pseudomonas fluorescens} (A:141-276)
Length = 136
Score = 83.9 bits (207), Expect = 2e-17
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 10/113 (8%)
Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216
+ G H + L++ F + A + +
Sbjct: 26 IEIYHNGPRHVFVGLPSI---DALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPA 82
Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKML-------GGGLLIEWHDN 262
GV AA GSAA + + V++L + +
Sbjct: 83 YGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGR 135
>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY,
lanthionine, isomeras; 2.40A {Bacillus anthracis str}
(A:1-96,A:294-308)
Length = 111
Score = 58.4 bits (141), Expect = 1e-09
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 6 VDFAKMEGIGNKILVIDMRG--CHDNITSDAINALSTDDNT--HFDQIMLIHDFQDASVD 61
F KM G+GN + ++M + + +S + NT D ++LI A
Sbjct: 24 FSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVS-NINTGIGADGMILICPSDVA--P 80
Query: 62 AFIRIINCDGSEVQSCG 78
+R+ N DGSE +SC
Sbjct: 81 VKMRMFNNDGSEGKSCA 97
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed
conformation, open conformation; 2.70A {Eubacterium
barkeri} (A:)
Length = 391
Score = 47.8 bits (113), Expect = 2e-06
Identities = 44/361 (12%), Positives = 80/361 (22%), Gaps = 92/361 (25%)
Query: 8 FAKMEGIGNKILVID-----MRGCHDNITSDAI-NALSTDDNTHFDQIMLIHDFQDASVD 61
F K + + D + G D D + A ++ +I D
Sbjct: 21 FLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPL-----TSKLAIIGPSTHPDAD 75
Query: 62 AFIRIINCDGSEVQ-----SCGNGMRCVVRFL--------TSRMKRKSFTFETIRGILVA 108
++ +CGN V F M R +L A
Sbjct: 76 VDYTFAQVSITDAVVDYNGNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYA 135
Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPF---------- 158
+ + + G+ +D A D L N
Sbjct: 136 EVEVEDGKAKVSGDCKIDGVPGTNAPELMDF-SDTAGAATGKVLPTGNVVDVLSTSKGDI 194
Query: 159 ---VVSMGNPHAIFFVED-----DLYHYDLASFGNLLAK--------------------- 189
+V + NP +D + +LLA
Sbjct: 195 DVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEA 254
Query: 190 --------------HPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVA 235
P + L R V G+A + A
Sbjct: 255 SEKSPAFPMIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSA 314
Query: 236 S---GCL-------HKTNRAVSVKMLGGGLLIEWHDNNH----VFMTGEAKKEWEGKLDI 281
+ G + V + G + + + + A++ EG + +
Sbjct: 315 ARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYV 374
Query: 282 K 282
+
Sbjct: 375 E 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 27.8 bits (62), Expect = 1.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 10/27 (37%)
Query: 200 SIARVTSLESL-DL---RTWERGVGLT 222
S+A V S+ESL ++ R G+T
Sbjct: 1 SLADVMSIESLVEVVFYR------GMT 21
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural
genomics, unknown function, PSI-2, protein structure
initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
Length = 261
Score = 25.9 bits (55), Expect = 6.4
Identities = 9/67 (13%), Positives = 16/67 (23%)
Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASV 60
QS AK + + G + Q + + D S+
Sbjct: 165 AQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERIARRNGQAIGVASAFDESI 224
Query: 61 DAFIRII 67
A +
Sbjct: 225 AAISKWS 231
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics,
joint center for structural genomics, JCSG; HET: EPE;
2.40A {Bacteroides thetaiotaomicron vpi-5482}
(A:1-56,A:111-321)
Length = 267
Score = 26.0 bits (56), Expect = 6.5
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGV 197
P+ + D L + ++G + S GV
Sbjct: 17 PNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGV 53
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,288,914
Number of extensions: 101750
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 22
Length of query: 296
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 208
Effective length of database: 1,981,209
Effective search space: 412091472
Effective search space used: 412091472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)