RPSBLAST alignment of GI: 254780710 and protein with PDBid: 3fve

>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis} Length = 290

 Score =  156 bits (395), Expect = 5e-39
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 40/296 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASV----- 60
           FAK  G  N  +++        +T+  + AL  D       D ++ +     A       
Sbjct: 4   FAKGHGTQNDFVLLPDVDAELVLTAARVAALC-DRRKGLGADGVLRVTTAGAAQAVGVLD 62

Query: 61  ---------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109
                    D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G     
Sbjct: 63  SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVT 122

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            +   +   D+   +     +    +     R                  V +GNPH   
Sbjct: 123 CHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLA-------------VDVGNPHLAC 169

Query: 170 FVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
                  D L   D+     +      F +GVN+ +       ++ +R  ERGVG T +C
Sbjct: 170 VDSQLTVDGLAALDVG--APVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSC 227

Query: 226 GSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           G+   A+ VA+   +      ++V + GG +++    +   F+ G +     G L 
Sbjct: 228 GTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLA 282