RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A* Length = 317 Score = 211 bits (539), Expect = 1e-55 Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 13/292 (4%) Query: 1 MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDA 58 ++ ++ F K G+GN +++D R + + A D N D ++ + Sbjct: 22 KETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNG 81 Query: 59 SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS 115 + D +RI N DGSE + CGNG+RC RF+ + SFT T G++V + DG Sbjct: 82 T-DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQ 140 Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173 + VDMG PIL + +P S +K + V+ + N VSMGNPH I F + Sbjct: 141 VKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW-NVTCVSMGNPHCITFGKKGG 199 Query: 174 ---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230 + +L G H MF N V S L +R WERG G T ACG+ AC Sbjct: 200 PNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGAC 259 Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 A VVA+ + +R +V + GG L IEW ++NH++MTG A+ + G + Sbjct: 260 ALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 311 >3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, cytoplasm, isomerase, lysine biosynthesis; 2.60A {Mycobacterium tuberculosis} Length = 290 Score = 156 bits (395), Expect = 5e-39 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 40/296 (13%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASV----- 60 FAK G N +++ +T+ + AL D D ++ + A Sbjct: 4 FAKGHGTQNDFVLLPDVDAELVLTAARVAALC-DRRKGLGADGVLRVTTAGAAQAVGVLD 62 Query: 61 ---------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109 D ++ N DGS Q CGNG+R +L + R F ++ G Sbjct: 63 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVT 122 Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169 + + D+ + + + R V +GNPH Sbjct: 123 CHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLA-------------VDVGNPHLAC 169 Query: 170 FVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225 D L D+ + F +GVN+ + ++ +R ERGVG T +C Sbjct: 170 VDSQLTVDGLAALDVG--APVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSC 227 Query: 226 GSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280 G+ A+ VA+ + ++V + GG +++ + F+ G + G L Sbjct: 228 GTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLA 282 >2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomerase; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A Length = 274 Score = 150 bits (380), Expect = 3e-37 Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 12/280 (4%) Query: 7 DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFI 64 F+KM G+GN +V+D + T + I L+ + + FDQ++++ D +D Sbjct: 2 QFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLA-NRHCGIGFDQLLIVEAPYDPELDFHY 60 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122 RI N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGE Sbjct: 61 RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 PI + IP ++ + + VSMGNPH + V+D ++ Sbjct: 121 PIWEPAKIPF-----TANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDI-QTANVEQ 174 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242 G LL H F E VN ++ + E + LR +ERG G T ACGS ACA+V Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234 Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281 N V V + GG L+IEW+ + ++MTGEA ++G + + Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 >2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY, lanthionine, isomeras; 2.40A {Bacillus anthracis str} Length = 308 Score = 148 bits (373), Expect = 2e-36 Identities = 98/290 (33%), Positives = 145/290 (50%), Gaps = 17/290 (5%) Query: 4 SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTH--FDQIMLIHDFQDASV 60 S F KM G+GN + ++M A+ A ++ NT D ++LI A Sbjct: 22 SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVA-- 79 Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDG 114 +R+ N DGSE +SCGNG+RCV ++ ++ FT ET+ GI+ A+ E + Sbjct: 80 PVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 139 Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174 +DMG P L IP+ + + + + VSMGNPHA+ FV DD Sbjct: 140 LAKIDMGAPRLTRAEIPML---GEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFV-DD 195 Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234 + L + G +L H MF E VN+ + + E ++ R WERG G+T ACG+ ACA+VV Sbjct: 196 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVV 255 Query: 235 ASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282 AS K R ++V + GG L+I W + +V M G A+ G + K Sbjct: 256 ASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305 >1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae} Length = 300 Score = 80.5 bits (197), Expect = 4e-16 Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 41/301 (13%) Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAI-------NALSTDDNTHFDQIMLIHDFQD 57 VD F + +GN + VI+ +N S LS T F + D Sbjct: 10 VDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLS---ETTF-----LFKPSD 61 Query: 58 ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117 D +RI + + FL + + +E + G++ Sbjct: 62 KKYDYKLRIFTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLV--------QECKIGAVP 113 Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---- 173 + + E ++ +K + + + F++ P ++ G + VED Sbjct: 114 ITINEGLISFKAPMADYESISSEMIADYEKAIGLKFIKPPALLHTGPEWIVALVEDAETC 173 Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233 + + A + ++ + S ++R + + + + + Sbjct: 174 FNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVA 233 Query: 234 VASGCLHKTNRAVSVKML---------GGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280 +A + + G +L ++ ++ G A +GK+ Sbjct: 234 LARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIK 293 Query: 281 I 281 + Sbjct: 294 V 294 >1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure initiative, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.21.1.2 d.21.1.2 Length = 288 Score = 76.2 bits (186), Expect = 9e-15 Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 23/290 (7%) Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 +D FA+ GN + V D + A+ A + + + + + D AF Sbjct: 10 LDVFAERPLTGNGLAVFDD---ASALDDAAMQAWTRELR--QFESIFLLPGDDP--RAFR 62 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122 I E+ G+ + L + + VA + Sbjct: 63 ARIFTLEEELPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEM 122 Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182 + + N L P VVS G P+ + V + Sbjct: 123 DQGRAEFGATPDAGTCRWFAEAFSLSANDLSGHPPRVVSTGLPYLLLPVTAEA-----LG 177 Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHK 241 + + + + + ++ + RTW+ G+ A GSAA Sbjct: 178 RARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYGL 237 Query: 242 TNRAVSVKML-------GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284 R + L ++ + V + G + +L G Sbjct: 238 AARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLTSAG 287 >1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiotic biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A Length = 307 Score = 66.9 bits (162), Expect = 5e-12 Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 20/240 (8%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISV 118 D IR EV CG+ + + ++ G + Sbjct: 67 DVRIRYFT-PTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYR 125 Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178 E PL + H+ + L V + G+ + ++ ++ Sbjct: 126 ISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDID 185 Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGVGLTAACGSAACASVVASG 237 L+ N L ++ ++ D R + +G+ + + + Sbjct: 186 ALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAW 245 Query: 238 CLHKTNRAVSVKML------------GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281 +H +L G + + V ++G A + + I Sbjct: 246 LVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAI 305 >1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A Length = 298 Score = 57.7 bits (138), Expect = 3e-09 Identities = 32/232 (13%), Positives = 57/232 (24%), Gaps = 21/232 (9%) Query: 61 DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120 DA IRI E+ G + L + ET G + + R + Sbjct: 77 DALIRIFTPVN-ELPFAGAPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAA 135 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 L R + + + G H + L Sbjct: 136 SMDQPIPTWTALGRDAELLKALGISD------STFPIEIYHNGPRHVFVGLPS---IDAL 186 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240 ++ F + A + + GV AA GSAA + Sbjct: 187 SALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHG 246 Query: 241 KTNRAVSVKML-------GGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281 + V++L + + V ++G G + + Sbjct: 247 QIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298 >3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis} Length = 299 Score = 52.8 bits (125), Expect = 1e-07 Identities = 27/301 (8%), Positives = 76/301 (25%), Gaps = 35/301 (11%) Query: 6 VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 D F +GN ++ D +T + + ++ F++ + + A D + Sbjct: 9 YDAFTNKPNMGNPAGIVLDA---DGLTEEEMQRIAEKVG--FNETSFVLSSEVA--DIRM 61 Query: 65 RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120 R + + + + + + + N +G + M Sbjct: 62 RYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKM 121 Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180 + +K + + + S GN I V++ + Sbjct: 122 RQTAPQFKDFA---GSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERM 178 Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERGVGLTAACGSAACASVVAS 236 + ++ + + + G + + V+ + Sbjct: 179 KPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGA 238 Query: 237 GCLHKTNRAVSVKM-----------LGGGLLIEWH-----DNNHVFMTGEAKKEWEGKLD 280 + +M G + + + + + G A E ++ Sbjct: 239 YYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVL 298 Query: 281 I 281 I Sbjct: 299 I 299 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.7 bits (69), Expect = 0.43 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 48/112 (42%) Query: 22 DMRGCHDNITSDAINALSTD----------DNTHFDQIMLIHDFQDASVDAFIRIINCDG 71 D+R +I+ ++ + TH I DF G Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATH------ILDF---------------G 505 Query: 72 SEVQSCGNGMRCVVRFLTSRMKRKSFTFE-T-IRGILVAKENRDGSISVDMG 121 G G + LT R K + T +R I+ D + D G Sbjct: 506 P-----G-GASGLGV-LTHRNK------DGTGVRVIVAG--TLDINPDDDYG 542 Score = 26.4 bits (58), Expect = 7.1 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%) Query: 109 KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNP 165 +EN I E I+D KL + F +++ H ++ F ++S P Sbjct: 1685 RENYSAMIF----ETIVDGKL-KTEKIFKEINE---H--STSYTFRSEKGLLSATQFTQP 1734 Query: 166 HAIFFVEDDLYHYDLASFGNL-----LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220 A+ +E + DL S G + A H + S+A V S+ESL + RG+ Sbjct: 1735 -ALTLMEKAAFE-DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792 Query: 221 LTAA 224 + A Sbjct: 1793 MQVA 1796 >3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint center for structural genomics, JCSG; HET: EPE; 2.40A {Bacteroides thetaiotaomicron vpi-5482} Length = 482 Score = 28.2 bits (61), Expect = 2.2 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ + D L + ++G + S GV S A V Sbjct: 17 PNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGC 62 >1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal enzyme, hydrolase; HET: NDG NAG; 2.10A {Homo sapiens} SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P* 1e3c_P* 1e33_P* Length = 489 Score = 27.8 bits (60), Expect = 2.7 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ + DDL + DL +G+ + P + + G+ + V Sbjct: 3 PNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPV 48 >1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone sulfate, dehydroepiandrosterone sulfate, human placental enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP: c.76.1.2 Length = 562 Score = 27.8 bits (60), Expect = 3.0 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ I + DDL D +GN + P + S GV L+ S Sbjct: 6 PNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAAS 51 >3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium NYSGXRC, transferase; 1.70A {Escherichia coli} Length = 502 Score = 27.6 bits (60), Expect = 3.4 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ + + DDL + DLA++G+ + K P + EGV + + Sbjct: 28 PNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPA 73 >2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Length = 254 Score = 27.4 bits (60), Expect = 4.1 Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 28 DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67 D+ + + + D H I+L+HD Q+A ++ Sbjct: 160 DDPVGEFESMIEGSDPKHHSFIILMHDGQEADTSRLENMV 199 >2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis YCH46} Length = 491 Score = 26.9 bits (58), Expect = 4.9 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ +F + D + G K P + SEG+N + A + Sbjct: 28 PNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSY 73 >3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A Length = 438 Score = 26.9 bits (59), Expect = 6.0 Identities = 6/55 (10%), Positives = 12/55 (21%) Query: 18 ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72 + +I R SD S + + ++ G Sbjct: 35 LYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQAGGQDFRDVAGGTMPSGR 89 >2xrf_A Uridine phosphorylase 2; transferase; 2.30A {Homo sapiens} Length = 303 Score = 26.3 bits (57), Expect = 8.2 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 159 VVSMGNPHAIFFVEDDLYHYDLAS 182 V + NP+ ED LYH DL + Sbjct: 3 FVHVKNPYLDLMDEDILYHLDLGT 26 >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Length = 247 Score = 26.3 bits (57), Expect = 9.2 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + + + +D + A N + T H I+L+H + +A Sbjct: 165 LTKEMGYYNVFWSLAFLDWKVDEQRGWQYAHNNVMT--MIHPGSILLLHAISKDNAEALA 222 Query: 65 RII 67 +II Sbjct: 223 KII 225 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,603,365 Number of extensions: 118633 Number of successful extensions: 339 Number of sequences better than 10.0: 1 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 26 Length of query: 296 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 204 Effective length of database: 3,462,782 Effective search space: 706407528 Effective search space used: 706407528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.9 bits)