RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase
[Candidatus Liberibacter asiaticus str. psy62]
         (296 letters)



>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic;
           PLP-independenet amino acid racemase,
           aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A
           {Arabidopsis thaliana} PDB: 3ekm_A*
          Length = 317

 Score =  211 bits (539), Expect = 1e-55
 Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 13/292 (4%)

Query: 1   MQSSMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDA 58
            ++ ++ F K  G+GN  +++D R   +   +    A   D N     D ++      + 
Sbjct: 22  KETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNG 81

Query: 59  SVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRM---KRKSFTFETIRGILVAKENRDGS 115
           + D  +RI N DGSE + CGNG+RC  RF+        + SFT  T  G++V +   DG 
Sbjct: 82  T-DYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQ 140

Query: 116 ISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED-- 173
           + VDMG PIL  + +P   S +K +        V+ +   N   VSMGNPH I F +   
Sbjct: 141 VKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW-NVTCVSMGNPHCITFGKKGG 199

Query: 174 ---DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAAC 230
               +   +L   G     H MF    N     V S   L +R WERG G T ACG+ AC
Sbjct: 200 PNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGAC 259

Query: 231 ASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           A VVA+    + +R  +V + GG L IEW  ++NH++MTG A+  + G   +
Sbjct: 260 ALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 311


>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid
           biosynthesis, cytoplasm, isomerase, lysine biosynthesis;
           2.60A {Mycobacterium tuberculosis}
          Length = 290

 Score =  156 bits (395), Expect = 5e-39
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 40/296 (13%)

Query: 8   FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASV----- 60
           FAK  G  N  +++        +T+  + AL  D       D ++ +     A       
Sbjct: 4   FAKGHGTQNDFVLLPDVDAELVLTAARVAALC-DRRKGLGADGVLRVTTAGAAQAVGVLD 62

Query: 61  ---------DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK 109
                    D ++   N DGS  Q CGNG+R    +L +     R  F   ++ G     
Sbjct: 63  SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVT 122

Query: 110 ENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIF 169
            +   +   D+   +     +    +     R                  V +GNPH   
Sbjct: 123 CHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLA-------------VDVGNPHLAC 169

Query: 170 FVE----DDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAAC 225
                  D L   D+     +      F +GVN+ +       ++ +R  ERGVG T +C
Sbjct: 170 VDSQLTVDGLAALDVG--APVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGETRSC 227

Query: 226 GSAACASVVASGC-LHKTNRAVSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLD 280
           G+   A+ VA+   +      ++V + GG +++    +   F+ G +     G L 
Sbjct: 228 GTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTV-TDATSFLRGPSVLVARGDLA 282


>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex,
           covalently bound inhibitor, isomerase; HET: ZDP; 1.35A
           {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB:
           1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
          Length = 274

 Score =  150 bits (380), Expect = 3e-37
 Identities = 95/280 (33%), Positives = 141/280 (50%), Gaps = 12/280 (4%)

Query: 7   DFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTH--FDQIMLIHDFQDASVDAFI 64
            F+KM G+GN  +V+D    +   T + I  L+ + +    FDQ++++    D  +D   
Sbjct: 2   QFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLA-NRHCGIGFDQLLIVEAPYDPELDFHY 60

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122
           RI N DGSEV  CGNG RC  RF+T +    +K  +  T +G +V     D  I V+MGE
Sbjct: 61  RIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 120

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
           PI +   IP        ++   +      +       VSMGNPH +  V+D     ++  
Sbjct: 121 PIWEPAKIPF-----TANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDI-QTANVEQ 174

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLHKT 242
            G LL  H  F E VN    ++ + E + LR +ERG G T ACGS ACA+V         
Sbjct: 175 LGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL 234

Query: 243 NRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEGKLDI 281
           N  V V + GG L+IEW+   + ++MTGEA   ++G + +
Sbjct: 235 NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274


>2otn_A Diaminopimelate epimerase; DAP, lysine metabolism, X-RAY,
           lanthionine, isomeras; 2.40A {Bacillus anthracis str}
          Length = 308

 Score =  148 bits (373), Expect = 2e-36
 Identities = 98/290 (33%), Positives = 145/290 (50%), Gaps = 17/290 (5%)

Query: 4   SMVDFAKMEGIGNKILVIDMRGCHDNITSDAINALS-TDDNTH--FDQIMLIHDFQDASV 60
           S   F KM G+GN  + ++M          A+ A   ++ NT    D ++LI     A  
Sbjct: 22  SQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVA-- 79

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAK----ENRDG 114
              +R+ N DGSE +SCGNG+RCV ++      ++   FT ET+ GI+ A+    E +  
Sbjct: 80  PVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVT 139

Query: 115 SISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDD 174
              +DMG P L    IP+     + +        + +        VSMGNPHA+ FV DD
Sbjct: 140 LAKIDMGAPRLTRAEIPML---GEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFV-DD 195

Query: 175 LYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVV 234
           +    L + G +L  H MF E VN+    + + E ++ R WERG G+T ACG+ ACA+VV
Sbjct: 196 VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVV 255

Query: 235 ASGCLHKTNRA--VSVKMLGGGLLIEWHDNNHVFMTGEAKKEWEGKLDIK 282
           AS    K  R   ++V + GG L+I W +  +V M G A+    G  + K
Sbjct: 256 ASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYK 305


>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region;
           PHZF enzyme superfamily, double hot-DOG, structural
           genomics; 2.05A {Saccharomyces cerevisiae}
          Length = 300

 Score = 80.5 bits (197), Expect = 4e-16
 Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 41/301 (13%)

Query: 6   VD-FAKMEGIGNKILVIDMRGCHDNITSDAI-------NALSTDDNTHFDQIMLIHDFQD 57
           VD F +   +GN + VI+     +N  S            LS    T F     +    D
Sbjct: 10  VDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLS---ETTF-----LFKPSD 61

Query: 58  ASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSIS 117
              D  +RI         +    +     FL       + +          +E + G++ 
Sbjct: 62  KKYDYKLRIFTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLV--------QECKIGAVP 113

Query: 118 VDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVED---- 173
           + + E ++ +K           +    +   +   F++ P ++  G    +  VED    
Sbjct: 114 ITINEGLISFKAPMADYESISSEMIADYEKAIGLKFIKPPALLHTGPEWIVALVEDAETC 173

Query: 174 DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASV 233
              + + A   +   ++      +           S ++R +   + +       + +  
Sbjct: 174 FNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVA 233

Query: 234 VASGCLHKTNRAVSVKML---------GGGLLIEWH----DNNHVFMTGEAKKEWEGKLD 280
           +A           +  +           G +L        ++   ++ G A    +GK+ 
Sbjct: 234 LARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIK 293

Query: 281 I 281
           +
Sbjct: 294 V 294


>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein structure
           initiative, structural genomics, PSI; 1.50A {Pseudomonas
           aeruginosa PAO1} SCOP: d.21.1.2 d.21.1.2
          Length = 288

 Score = 76.2 bits (186), Expect = 9e-15
 Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 23/290 (7%)

Query: 6   VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +D FA+    GN + V D       +   A+ A + +      + + +    D    AF 
Sbjct: 10  LDVFAERPLTGNGLAVFDD---ASALDDAAMQAWTRELR--QFESIFLLPGDDP--RAFR 62

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISVDMGE 122
             I     E+   G+ +      L        +      +    VA  +           
Sbjct: 63  ARIFTLEEELPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEM 122

Query: 123 PILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDLAS 182
                +      +              N L    P VVS G P+ +  V  +        
Sbjct: 123 DQGRAEFGATPDAGTCRWFAEAFSLSANDLSGHPPRVVSTGLPYLLLPVTAEA-----LG 177

Query: 183 FGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWER-GVGLTAACGSAACASVVASGCLHK 241
               +       + +  +   +  ++  + RTW+  G+    A GSAA            
Sbjct: 178 RARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDNLGLVEDVATGSAAGPVAAYLVEYGL 237

Query: 242 TNRAVSVKML-------GGGLLIEWHDNNHVFMTGEAKKEWEGKLDIKTG 284
             R     +           L ++   +  V + G  +     +L    G
Sbjct: 238 AARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLTSAG 287


>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis
           protein, epimerase, antibiotic biosynthesis protein,
           structural genomics; 2.00A {Escherichia coli} SCOP:
           d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
          Length = 307

 Score = 66.9 bits (162), Expect = 5e-12
 Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 20/240 (8%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMK--RKSFTFETIRGILVAKENRDGSISV 118
           D  IR       EV  CG+            +     +    ++ G       +      
Sbjct: 67  DVRIRYFT-PTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYR 125

Query: 119 DMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHY 178
              E        PL         +  H+   + L      V + G+   +  ++ ++   
Sbjct: 126 ISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTGHSKVMIPLKPEVDID 185

Query: 179 DLASFGNLLAKHPMFSEGVNLSIARVTSLES-LDLRTWERGVGLTAACGSAACASVVASG 237
            L+   N L               ++   ++  D R +   +G+     +      + + 
Sbjct: 186 ALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIGIVEDPVTGNANGPMGAW 245

Query: 238 CLHKTNRAVSVKML------------GGGLLIEWH----DNNHVFMTGEAKKEWEGKLDI 281
            +H         +L             G + +           V ++G A   +  +  I
Sbjct: 246 LVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFHAEWAI 305


>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A
           {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB:
           1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
          Length = 298

 Score = 57.7 bits (138), Expect = 3e-09
 Identities = 32/232 (13%), Positives = 57/232 (24%), Gaps = 21/232 (9%)

Query: 61  DAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGILVAKENRDGSISVDM 120
           DA IRI      E+   G  +      L +         ET  G +  +  R     +  
Sbjct: 77  DALIRIFTPVN-ELPFAGAPLLGTAIALGAHTDNHRLYLETQMGTIAFELERQNGSVIAA 135

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
                      L R  + +                   +   G  H    +        L
Sbjct: 136 SMDQPIPTWTALGRDAELLKALGISD------STFPIEIYHNGPRHVFVGLPS---IDAL 186

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERGVGLTAACGSAACASVVASGCLH 240
           ++          F +      A         + +   GV   AA GSAA    +      
Sbjct: 187 SALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHG 246

Query: 241 KTNRAVSVKML-------GGGLLIEWHDNN----HVFMTGEAKKEWEGKLDI 281
           +      V++L          +  +          V ++G       G + +
Sbjct: 247 QIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298


>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate
           epimerase-like fold, alpha and beta protein class,
           structural genomics; HET: MSE; 1.50A {Bacillus
           anthracis}
          Length = 299

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 27/301 (8%), Positives = 76/301 (25%), Gaps = 35/301 (11%)

Query: 6   VD-FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
            D F     +GN   ++      D +T + +  ++      F++   +   + A  D  +
Sbjct: 9   YDAFTNKPNMGNPAGIVLDA---DGLTEEEMQRIAEKVG--FNETSFVLSSEVA--DIRM 61

Query: 65  RIINCDGSEVQSCGNGMRCVVRFLTSRMKRK----SFTFETIRGILVAKENRDGSISVDM 120
           R               +  +       +  +    +   +     +    N +G   + M
Sbjct: 62  RYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKM 121

Query: 121 GEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVSMGNPHAIFFVEDDLYHYDL 180
            +    +K         +       +   +          S GN   I  V++      +
Sbjct: 122 RQTAPQFKDFA---GSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERM 178

Query: 181 ASFGNLLAKHPMFSEGVNLSIARVTSLES----LDLRTWERGVGLTAACGSAACASVVAS 236
                +           ++    + + +               G      +   + V+ +
Sbjct: 179 KPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGA 238

Query: 237 GCLHKTNRAVSVKM-----------LGGGLLIEWH-----DNNHVFMTGEAKKEWEGKLD 280
                  +    +M             G + +        +   + + G A    E ++ 
Sbjct: 239 YYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVL 298

Query: 281 I 281
           I
Sbjct: 299 I 299


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.7 bits (69), Expect = 0.43
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 48/112 (42%)

Query: 22  DMRGCHDNITSDAINALSTD----------DNTHFDQIMLIHDFQDASVDAFIRIINCDG 71
           D+R    +I+   ++ +               TH      I DF               G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATH------ILDF---------------G 505

Query: 72  SEVQSCGNGMRCVVRFLTSRMKRKSFTFE-T-IRGILVAKENRDGSISVDMG 121
                 G G   +   LT R K      + T +R I+      D +   D G
Sbjct: 506 P-----G-GASGLGV-LTHRNK------DGTGVRVIVAG--TLDINPDDDYG 542



 Score = 26.4 bits (58), Expect = 7.1
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)

Query: 109  KENRDGSISVDMGEPILDWKLIPLARSFDKMDRDRFHIGPVNHLFLRNPFVVS---MGNP 165
            +EN    I     E I+D KL    + F +++    H    ++ F     ++S      P
Sbjct: 1685 RENYSAMIF----ETIVDGKL-KTEKIFKEINE---H--STSYTFRSEKGLLSATQFTQP 1734

Query: 166  HAIFFVEDDLYHYDLASFGNL-----LAKHPMFSEGVNLSIARVTSLESLDLRTWERGVG 220
             A+  +E   +  DL S G +      A H +       S+A V S+ESL    + RG+ 
Sbjct: 1735 -ALTLMEKAAFE-DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792

Query: 221  LTAA 224
            +  A
Sbjct: 1793 MQVA 1796


>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
           center for structural genomics, JCSG; HET: EPE; 2.40A
           {Bacteroides thetaiotaomicron vpi-5482}
          Length = 482

 Score = 28.2 bits (61), Expect = 2.2
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
           P+ +    D L    + ++G           + S GV  S A V  
Sbjct: 17  PNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGC 62


>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
           enzyme, hydrolase; HET: NDG NAG; 2.10A {Homo sapiens}
           SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
           1e3c_P* 1e33_P*
          Length = 489

 Score = 27.8 bits (60), Expect = 2.7
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
           P+ +    DDL + DL  +G+  +  P    + + G+  +   V  
Sbjct: 3   PNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPV 48


>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
           sulfate, dehydroepiandrosterone sulfate, human placental
           enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
           c.76.1.2
          Length = 562

 Score = 27.8 bits (60), Expect = 3.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
           P+ I  + DDL   D   +GN   + P    + S GV L+     S
Sbjct: 6   PNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAAS 51


>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure
           initiative, NEW YORK structural genomix research
           consortium NYSGXRC, transferase; 1.70A {Escherichia
           coli}
          Length = 502

 Score = 27.6 bits (60), Expect = 3.4
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
           P+ +  + DDL + DLA++G+ + K P    +  EGV  +     +
Sbjct: 28  PNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPA 73


>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
           protein, microsporidian, chitin deacetylase, hydrolase,
           inactive; 1.50A {Encephalitozoon cuniculi}
          Length = 254

 Score = 27.4 bits (60), Expect = 4.1
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 28  DNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRII 67
           D+   +  + +   D  H   I+L+HD Q+A       ++
Sbjct: 160 DDPVGEFESMIEGSDPKHHSFIILMHDGQEADTSRLENMV 199


>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
           structural genomics, PSI-2, protein structure
           initiative; 1.70A {Bacteroides fragilis YCH46}
          Length = 491

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206
           P+ +F + D      +   G    K P    + SEG+N + A  + 
Sbjct: 28  PNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSY 73


>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL,
          glycosidase, hydrolase, peptidoglycan-anchor, secreted;
          1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
          Length = 438

 Score = 26.9 bits (59), Expect = 6.0
 Identities = 6/55 (10%), Positives = 12/55 (21%)

Query: 18 ILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRIINCDGS 72
          + +I  R       SD     S  +   +    ++                  G 
Sbjct: 35 LYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQAGGQDFRDVAGGTMPSGR 89


>2xrf_A Uridine phosphorylase 2; transferase; 2.30A {Homo sapiens}
          Length = 303

 Score = 26.3 bits (57), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 159 VVSMGNPHAIFFVEDDLYHYDLAS 182
            V + NP+     ED LYH DL +
Sbjct: 3   FVHVKNPYLDLMDEDILYHLDLGT 26


>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
           bacterial cell WALL, carbohydrate esterase; 1.7A
           {Bacillus anthracis} SCOP: c.6.2.3
          Length = 247

 Score = 26.3 bits (57), Expect = 9.2
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 5   MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64
           +        +   +  +D +         A N + T    H   I+L+H     + +A  
Sbjct: 165 LTKEMGYYNVFWSLAFLDWKVDEQRGWQYAHNNVMT--MIHPGSILLLHAISKDNAEALA 222

Query: 65  RII 67
           +II
Sbjct: 223 KII 225


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,603,365
Number of extensions: 118633
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 26
Length of query: 296
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 204
Effective length of database: 3,462,782
Effective search space: 706407528
Effective search space used: 706407528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)