RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Length = 144 Score = 110 bits (277), Expect = 9e-26 Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 159 VVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWERG 218 VSMGNPH + V DD+ ++ G LL H F E VN ++ + E + LR +ERG Sbjct: 22 AVSMGNPHCVVQV-DDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERG 80 Query: 219 VGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGGLLIEWH-DNNHVFMTGEAKKEWEG 277 G T ACGS ACA+V N V V + GG L+IEW+ + ++MTGEA ++G Sbjct: 81 AGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 140 Query: 278 KLDI 281 + + Sbjct: 141 FITL 144 >d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]} Length = 130 Score = 109 bits (272), Expect = 4e-25 Identities = 47/127 (37%), Positives = 67/127 (52%), Gaps = 3/127 (2%) Query: 8 FAKMEGIGNKILVIDMRGCHDNITSDAINALSTDD-NTHFDQIMLIHDFQDASVDAFIRI 66 F+KM G+GN +V+D + T + I L+ FDQ++++ D +D RI Sbjct: 3 FSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRI 62 Query: 67 INCDGSEVQSCGNGMRCVVRFLTSR--MKRKSFTFETIRGILVAKENRDGSISVDMGEPI 124 N DGSEV CGNG RC RF+T + +K + T +G +V D I V+MGEPI Sbjct: 63 FNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPI 122 Query: 125 LDWKLIP 131 + IP Sbjct: 123 WEPAKIP 129 >d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716 {Pseudomonas aeruginosa [TaxId: 287]} Length = 153 Score = 70.9 bits (173), Expect = 1e-13 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 13/131 (9%) Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 P VVS G P+ + V + + + + + + ++ + RTW+ Sbjct: 25 PRVVSTGLPYLLLPVTAEALGRARQ-----VNDLQEALDKLGAAFVYLLDVDGREGRTWD 79 Query: 217 R-GVGLTAACGSAACASVVASGCLHKTNRAVSVKMLGGG-------LLIEWHDNNHVFMT 268 G+ A GSAA R + G L ++ + V + Sbjct: 80 NLGLVEDVATGSAAGPVAAYLVEYGLAARGEPFVLHQGRFLERPSRLDVQVATDGSVRVG 139 Query: 269 GEAKKEWEGKL 279 G + +L Sbjct: 140 GHVQLLARAEL 150 >d1qy9a2 d.21.1.2 (A:130-297) Hypothetical protein YddE {Escherichia coli [TaxId: 562]} Length = 168 Score = 52.5 bits (125), Expect = 4e-08 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 23/146 (15%) Query: 157 PFVVSMGNPHAIFFVED----DLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDL 212 V + G+ + ++ D DL + + K G D Sbjct: 25 IQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGC--NGFFP-FQIRPGKNETDG 81 Query: 213 RTWERGVGLTAACGSAACASVVASGCLHK----------TNRAVSVKMLGGGLLIE---- 258 R + +G+ + + + +H + + LG +IE Sbjct: 82 RMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVT 141 Query: 259 --WHDNNHVFMTGEAKKEWEGKLDIK 282 + V ++G A + + I+ Sbjct: 142 IRDNQPEKVTISGTAVILFHAEWAIE 167 >d1xuba2 d.21.1.2 (A:129-278) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Length = 150 Score = 49.8 bits (118), Expect = 3e-07 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 14/136 (10%) Query: 157 PFVVSMGNPHAIFFVEDDLYHYDLASFGNLLAKHPMFSEGVNLSIARVTSLESLDLRTWE 216 + G H + L++ F + A + + Sbjct: 18 IEIYHNGPRHVFVGLPS---IDALSALHPDHRALSNFHDMAINCFAGAGRRWRSRMFSPA 74 Query: 217 RGVGLTAACGSAACASVVASGCLHKTNRAVSVKML-------GGGLLIEWHDNNH----V 265 GV AA GSAA + + V++L + + V Sbjct: 75 YGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRV 134 Query: 266 FMTGEAKKEWEGKLDI 281 ++G G + + Sbjct: 135 EVSGNGVTFGRGTIVL 150 >d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]} Length = 485 Score = 27.8 bits (60), Expect = 1.0 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ + DDL + DL +G+ + P + + G+ + V Sbjct: 3 PNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPV 48 >d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF {Pseudomonas fluorescens [TaxId: 294]} Length = 128 Score = 28.0 bits (62), Expect = 1.1 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 53 HDFQDASVDAFIRIINCDGSEVQSCGNGMRCVVRFLTSRMKRKSFTFETIRGIL-VAKEN 111 + DA + F +E+ G + L + ET G + E Sbjct: 53 RNGGDALIRIF-----TPVNELPFAGAPLLGTAIALGAHTDNHRLYLETQMGTIAFELER 107 Query: 112 RDGS-ISVDMGEPILDWKLIPLA 133 ++GS I+ M +PI W L Sbjct: 108 QNGSVIAASMDQPIPTWT--ALG 128 >d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]} Length = 553 Score = 27.9 bits (60), Expect = 1.2 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 165 PHAIFFVEDDLYHYDLASFGNLLAKHP----MFSEGVNLSIARVTS 206 P+ I + DDL D +GN + P + S GV L+ S Sbjct: 5 PNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAAS 50 >d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 271 Score = 26.9 bits (59), Expect = 1.9 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%) Query: 90 SRMKRKSFTFETIRGILVAK-ENRDGSISVDM-----GEPILDWKLIP 131 S +K T R IL K ++ + DM GE + +K I Sbjct: 15 SYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHIT 62 >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196 Score = 25.9 bits (56), Expect = 4.1 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 5 MVDFAKMEGIGNKILVIDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFI 64 + + + I + +D + ++ I I+L+HD +V+A Sbjct: 107 IRNSLDLSFIMWDVDSLDWKSKNEASILTEIQ-----HQVANGSIVLMHDIHSPTVNALP 161 Query: 65 RII 67 R+I Sbjct: 162 RVI 164 >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63 Score = 25.7 bits (56), Expect = 4.3 Identities = 6/19 (31%), Positives = 8/19 (42%) Query: 66 IINCDGSEVQSCGNGMRCV 84 ++ C E C NG C Sbjct: 3 LVKCAEKEKTFCVNGGECF 21 >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 Score = 24.7 bits (53), Expect = 9.3 Identities = 5/14 (35%), Positives = 13/14 (92%) Query: 9 AKMEGIGNKILVID 22 A+++G+G ++L++D Sbjct: 7 ARLDGLGGRVLIVD 20 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,130,901 Number of extensions: 51375 Number of successful extensions: 136 Number of sequences better than 10.0: 1 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 18 Length of query: 296 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 211 Effective length of database: 1,240,546 Effective search space: 261755206 Effective search space used: 261755206 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (24.8 bits)