HHsearch alignment for GI: 254780711 and conserved domain: COG0467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms].
Probab=97.47 E-value=0.0017 Score=46.87 Aligned_cols=145 Identities=19% Similarity=0.261 Sum_probs=84.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC----------CCCCCCC-------
Q ss_conf 18996234433346889999999986148950782054221004779999851034----------7422233-------
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ----------VDTLEVI------- 163 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~----------v~~~~~~------- 163 (461)
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~ 102 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKGLVSIV 102 (260)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 78999938998689999999997762-69858999920698999999988099778975444068763121112542010
Q ss_pred --CCCHHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHH--HHHHHHHHHCCCC--CCCCCCCHHCCHHHHH-HHH
Q ss_conf --210368999999999974158869983344--222112468--9999998513851--1000310111225688-889
Q gi|254780711|r 164 --PEQSPEKIAIRATQSARDGGYDAVILDTAG--RNHINDSLM--QEISEIKSLTNPH--EILLVADALTGQDAVH-LAR 234 (461)
Q Consensus 164 --~~~dp~~i~~~a~~~a~~~~~D~iiiDTaG--R~~~d~~lm--~El~~i~~~~~p~--e~~lV~da~~Gq~a~~-~a~ 234 (461)
T Consensus 103 ~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~~~~~~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 182 (260)
T COG0467 103 VGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLNDPALVRRILLLLKRFLKKLGVTSLLTTEAPVEERGESGVEE 182 (260)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCEE
T ss_conf 46652289999999999986289889996630776652782578999999998765068489999744334666566142
Q ss_pred HHHHHCCCCCEEEEECC
Q ss_conf 88763584407764115
Q gi|254780711|r 235 NFDKIVDLTGIILTRMD 251 (461)
Q Consensus 235 ~F~~~~~i~giIlTKlD 251 (461)
T Consensus 183 -----~~vdgvI~l~~~ 194 (260)
T COG0467 183 -----YIVDGVIRLDLK 194 (260)
T ss_pred -----EEEEEEEEEEEE
T ss_conf -----168999999777