HHsearch alignment for GI: 254780711 and conserved domain: COG2403

Probab=96.67  E-value=0.031  Score=37.28  Aligned_cols=147  Identities=18%  Similarity=0.226  Sum_probs=85.4

Q ss_pred             HHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHH----HHHHHHCC----
Q ss_conf             7187742100025884189962344333468899999999861489507820-54221004779----99985103----
Q gi|254780711|r   85 VLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-LDVHRPAAQEQ----LRYLGEQI----  155 (461)
Q Consensus        85 lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-~Dt~R~aA~eQ----L~~~a~~~----  155 (461)
T Consensus       114 ~~gP~et~~--~~ekPviaV~atrtg~GKsaVS~~v~r~l~er-gyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~  190 (449)
T COG2403         114 ELGPKETML--KLEKPVIAVTATRTGVGKSAVSRYVARLLRER-GYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAA  190 (449)
T ss_pred             EECCCHHHH--HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCEEECCCCCHHHHHHHHCHHHCCCCCC
T ss_conf             727527766--51485599997236655678889999999866-982379955702337731001897737765264225


Q ss_pred             ----------CCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             ----------4742-22332103689999999999741588699833442221124689999998513851100031011
Q gi|254780711|r  156 ----------QVDT-LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADAL  224 (461)
Q Consensus       156 ----------~v~~-~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~  224 (461)
T Consensus       191 t~eereeye~~I~tg~~vlAGvdy~~vlke~~~~a-----D~IlwdGgn---nd----------fPfvkpd~~Ivvvda~  252 (449)
T COG2403         191 TDEEREEYESYIPTGGGVLAGVDYGTVLKEGEKEA-----DFILWDGGN---ND----------FPFVKPDLHIVVVDAL  252 (449)
T ss_pred             CHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHC-----CEEEEECCC---CC----------CCCCCCCCEEEEECCC
T ss_conf             56668878743643553465204899998776415-----589994888---77----------8852577059993388


Q ss_pred             C-CHHHHHHHHHHHHHCC---CCCEEEEECCCCCCC
Q ss_conf             1-2256888898876358---440776411576633
Q gi|254780711|r  225 T-GQDAVHLARNFDKIVD---LTGIILTRMDGDGRG  256 (461)
Q Consensus       225 ~-Gq~a~~~a~~F~~~~~---i~giIlTKlD~~akg  256 (461)
T Consensus       253 rpg~ei~~----~pGe~~irlAD~VIItkveea~~~  284 (449)
T COG2403         253 RPGEEIGS----FPGELRIRLADLVIITKVEEAMAE  284 (449)
T ss_pred             CCCHHHCC----CCCCEEEEECCEEEEECCCCHHHH
T ss_conf             87256526----877315322128999613513367