HHsearch alignment for GI: 254780711 and conserved domain: COG3854
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=95.30 E-value=0.11 Score=33.13 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=54.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 189962344333468899999999861----4895078205422100477999985103474222332103689999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTL----KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~----~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c----pk~---~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC----PKA---EGM 210 (308)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCC----HHH---HHH
T ss_conf 2469965998870779999999863151126773289971500430343588603232210104656----178---889
Q ss_pred HHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999-7415886998334422211246899999985138
Q gi|254780711|r 177 QSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN 213 (461)
Q Consensus 177 ~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~ 213 (461)
T Consensus 211 mmaIrsm~PEViIvDEIGt-------~~d~~A~~ta~~ 241 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGT-------EEDALAILTALH 241 (308)
T ss_pred HHHHHHCCCCEEEEECCCC-------HHHHHHHHHHHH
T ss_conf 9999954995799834364-------777999999985