HHsearch alignment for GI: 254780711 and conserved domain: COG3854

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=95.30  E-value=0.11  Score=33.13  Aligned_cols=99  Identities=21%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             189962344333468899999999861----4895078205422100477999985103474222332103689999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTL----KKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~----~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c----pk~---~gm  210 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC----PKA---EGM  210 (308)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCC----HHH---HHH
T ss_conf             2469965998870779999999863151126773289971500430343588603232210104656----178---889


Q ss_pred             HHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999-7415886998334422211246899999985138
Q gi|254780711|r  177 QSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN  213 (461)
Q Consensus       177 ~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~  213 (461)
T Consensus       211 mmaIrsm~PEViIvDEIGt-------~~d~~A~~ta~~  241 (308)
T COG3854         211 MMAIRSMSPEVIIVDEIGT-------EEDALAILTALH  241 (308)
T ss_pred             HHHHHHCCCCEEEEECCCC-------HHHHHHHHHHHH
T ss_conf             9999954995799834364-------777999999985