HHsearch alignment for GI: 254780711 and conserved domain: PRK00313
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional.
Probab=96.89 E-value=0.0047 Score=43.49 Aligned_cols=196 Identities=15% Similarity=0.228 Sum_probs=107.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC----------------CCHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 3443334688999999998614895078205422----------------100477999985103474222332103689
Q gi|254780711|r 107 GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVH----------------RPAAQEQLRYLGEQIQVDTLEVIPEQSPEK 170 (461)
Q Consensus 107 Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~----------------R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~ 170 (461)
T Consensus 60 tvGGTGKTP~v~~La~~L~~-~G~~~~IiSRGYg~~~~~~~~~v~~~~~~~~vGDEpl-lla~~~~~pV~V~~---~R~~ 134 (332)
T PRK00313 60 TVGGTGKTPLILWLIEHCRR-RGLRVGVVSRGYGARPPQLPWRVTADQDAAEAGDEPL-LIVQRTGVPLMIDP---DRPR 134 (332)
T ss_pred EECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCEEECCCCCHHHCCCHHH-HHHHCCCCCEEECC---CHHH
T ss_conf 35887777999999999997-7996589864656766677355457768455585889-99850696299807---6999
Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC--HHHH----HHHHHHHHHCCCC
Q ss_conf 99999999974-158869983344222112468999999851385110003101112--2568----8889887635844
Q gi|254780711|r 171 IAIRATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG--QDAV----HLARNFDKIVDLT 243 (461)
Q Consensus 171 i~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G--q~a~----~~a~~F~~~~~i~ 243 (461)
T Consensus 135 ----a~~~l~~~~~~dviIlDDGf-Qh~~-------------l~rDl~Ivvid~~~~fGNg~lLPaGpLREp~~~l~raD 196 (332)
T PRK00313 135 ----AVQALLAAEPLDLILSDDGL-QHYR-------------LARDLELVLIDAARGLGNGRCLPAGPLREPAERLAEVD 196 (332)
T ss_pred ----HHHHHHHCCCCCEEEECCCC-CCHH-------------HCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf ----99999964999889955853-1201-------------04880699845667888988877864558853760089
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 0776411576633036777888478730261586723210013688998773586278899987421-126789988865
Q gi|254780711|r 244 GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARN-LNEKQAALTAKK 322 (461)
Q Consensus 244 giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~-~d~~~~~~l~~k 322 (461)
T Consensus 197 ~vi~~g~~~~~~~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~k~v~a~aGIgnP~~F~~~L~~~g~~~~~--~--~F 268 (332)
T PRK00313 197 AVLYNGAAADPDDGYAFRLQ---PSALVNLRSGERRP-LDHFPAGQALHAVAGIGNPQRFFNTLEGLHWRPVP--H--PF 268 (332)
T ss_pred EEEECCCCCCCCHHHHHHCC---CCCCEECCCCCCCC-CCHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEE--E--EC
T ss_conf 99997997555645664407---67428678856266-31102488289998159879999999987993766--4--68
Q ss_pred HHCCCCCHHHH
Q ss_conf 31046379999
Q gi|254780711|r 323 IAKGKFDLEDL 333 (461)
Q Consensus 323 ~~~g~F~l~Df 333 (461)
T Consensus 269 pDHh~ys~~Di 279 (332)
T PRK00313 269 ADHAQYSAQEL 279 (332)
T ss_pred CCCCCCCHHHH
T ss_conf 99767899997