HHsearch alignment for GI: 254780711 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=96.46 E-value=0.04 Score=36.43 Aligned_cols=198 Identities=17% Similarity=0.241 Sum_probs=99.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 25884189962344333468899999999861489507820542210047799998510347422233210368999999
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
T Consensus 162 Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~----~~fi~v~-------~s~l------------~sk~vGe-sek~vr~l 217 (390)
T PRK03992 162 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVV-------GSEL------------VQKFIGE-GARLVREL 217 (390)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHC----CCEEEEE-------HHHH------------HHCCCCH-HHHHHHHH
T ss_conf 999997278689899978999999998748----8879966-------7997------------5245417-99999999
Q ss_pred HHHHHHCCCCEEEEECC---C--CC--------CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC
Q ss_conf 99997415886998334---4--22--------21124689999998513851100031011122568888988763584
Q gi|254780711|r 176 TQSARDGGYDAVILDTA---G--RN--------HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL 242 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTa---G--R~--------~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i 242 (461)
T Consensus 218 F~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG-~~~~~~V~VIaATNrpd~LDpAll--RpGRF 294 (390)
T PRK03992 218 FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG-FDPRGNVKIIAATNRPDILDPALL--RPGRF 294 (390)
T ss_pred HHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCHHCCHHHH--CCCCC
T ss_conf 999997099089714325663356778886208899999999997448-777788279960698100597775--47765
Q ss_pred CCEEEE-ECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 407764-1157663303677788847873026158672321001368899877358--6278899987421126789988
Q gi|254780711|r 243 TGIILT-RMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM--GDVVSLVEKAARNLNEKQAALT 319 (461)
Q Consensus 243 ~giIlT-KlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm--gD~~~l~e~~~~~~d~~~~~~l 319 (461)
T Consensus 295 Dr~I~iplPd~~~R~-~Ilki-~~~~~~l-----~------~dvdl~~lA~~T~G~SGADI~~lc~EA~m---------~ 352 (390)
T PRK03992 295 DRIIEVPLPDEEGRL-EILKI-HTRKMNL-----A------DDVDLEELAELTEGASGADLKAICTEAGM---------F 352 (390)
T ss_pred CEEEEECCCCHHHHH-HHHHH-HHCCCCC-----C------CCCCHHHHHHHCCCCCHHHHHHHHHHHHH---------H
T ss_conf 238870894999999-99999-8479999-----9------88899999976879989999999999999---------9
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 86531046379999999999851
Q gi|254780711|r 320 AKKIAKGKFDLEDLAEQFRQTQK 342 (461)
Q Consensus 320 ~~k~~~g~F~l~Df~~Ql~~i~k 342 (461)
T Consensus 353 Air~~r~~i~~~Df~~Ai~kv~~ 375 (390)
T PRK03992 353 AIRDDRTEVTMEDFLKAIEKVMG 375 (390)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 99858986089999999999967