HHsearch alignment for GI: 254780711 and conserved domain: PRK04195

Probab=96.84  E-value=0.043  Score=36.17  Aligned_cols=87  Identities=17%  Similarity=0.202  Sum_probs=47.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             189962344333468899999999861489507-8205422100477999985103474222332103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKIL-MASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~-lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
T Consensus        41 k~lLL~GPpGvGKTT~a~~lAk~~----g~~viElNASD~R~~~~I~~~i~~~~~~~-sl~-------------------   96 (403)
T PRK04195         41 KALLLYGPPGVGKTSLAHALANDY----GWEVIELNASDQRTKDVIERVAGEASTSG-SLF-------------------   96 (403)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH----CCCEEEECCCCCCCHHHHHHHHHHHHHCC-CCC-------------------
T ss_conf             469988939987999999999984----99859977101147899999999876068-877-------------------


Q ss_pred             HHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHC
Q ss_conf             741588699833442221--124689999998513
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI--NDSLMQEISEIKSLT  212 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~--d~~lm~El~~i~~~~  212 (461)
T Consensus        97 -~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s  130 (403)
T PRK04195         97 -GAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA  130 (403)
T ss_pred             -CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             -8873499963434457244479999999998548