HHsearch alignment for GI: 254780711 and conserved domain: PRK04301
>PRK04301 radA DNA repair and recombination protein RadA; Validated.
Probab=97.71 E-value=0.0055 Score=43.01 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHCCCCCCCHHHHHH-HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH--------HHHHH
Q ss_conf 98742888789899999-9999999998-52469699999999999998303111269989999999--------99999
Q gi|254780711|r 13 FQNITGKGSLSETDISN-TLREIRRTFL-EADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKI--------VHDEL 82 (461)
Q Consensus 13 ~~~l~~~~~l~e~~i~~-~l~ei~~aLL-eaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~ki--------v~~eL 82 (461)
T Consensus 20 ~~kL~~aG~~tv~~l~~~~~~~----L~~~~gis~~~a~ki~~~a~~~~~~---~~f~Ta~el~~~r~~~~~isTg~~~l 92 (318)
T PRK04301 20 AEKLREAGYDTVEAIAVASPKE----LSEIAGISESTAAKIIEAAREALDI---GGFETALEVLERRKSIGKITTGSKEL 92 (318)
T ss_pred HHHHHHCCCCCHHHHHCCCHHH----HHHHHCCCHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHCCCCCCCCCHHH
T ss_conf 9999986995499987489999----9985099999999999999985365---79826999999863478247888788
Q ss_pred HHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH---HHCC--CCEEEECC-CCCCCHHHHHHHHHHHCC-
Q ss_conf 9871877421000258841899623443334688999999998---6148--95078205-422100477999985103-
Q gi|254780711|r 83 VEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK---TLKK--KKILMASL-DVHRPAAQEQLRYLGEQI- 155 (461)
Q Consensus 83 ~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~---~~~~--~kV~lv~~-Dt~R~aA~eQL~~~a~~~- 155 (461)
T Consensus 93 D~lLgGGi~-------~g~ITEi~Ge~gsGKTQlc~qLav~~qlp~~~GGl~g~vvYIDTEgtF~peRi~qi---a~~~g 162 (318)
T PRK04301 93 DELLGGGIE-------TQSITEFYGEFGSGKTQICHQLAVNVQLPEEEGGLEGKAVYIDTENTFRPERIEQM---AEGLG 162 (318)
T ss_pred HHHCCCCCC-------CCEEEEEECCCCCCCHHHHHHHHHHEECCHHHCCCCCCEEEEECCCCCCHHHHHHH---HHHHC
T ss_conf 805479833-------67078886688787035667767653376777898863799956898697999999---99849
Q ss_pred --------CCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Q ss_conf --------47422233210368999999999974-158869983344222
Q gi|254780711|r 156 --------QVDTLEVIPEQSPEKIAIRATQSARD-GGYDAVILDTAGRNH 196 (461)
Q Consensus 156 --------~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D~iiiDTaGR~~ 196 (461)
T Consensus 163 ~d~~~~L~nI~v~r~~~~~~q~~~~~~~~~~~~~~~~v~LvVvDSi~alf 212 (318)
T PRK04301 163 LDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGNNIKLVIVDSLTAHF 212 (318)
T ss_pred CCHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHE
T ss_conf 99789864026861399899999999999999627880499994342321