HHsearch alignment for GI: 254780711 and conserved domain: PRK05541

Probab=97.40  E-value=0.00026  Score=53.12  Aligned_cols=101  Identities=30%  Similarity=0.396  Sum_probs=61.2

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
T Consensus         4 ~~kg~viW~TGLsGSGKTTiA~~l~~~L~~-~g~~~~~LDGD~lR~-------~~~~-~---gf---s~~~R~~n~~r~~   68 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDELRE-------IFGH-S---GY---DKESRIEMALKRA   68 (176)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHH-------HHCC-C---CC---CHHHHHHHHHHHH
T ss_conf             888679997899999899999999999997-599779988689998-------7365-8---98---9999999999999


Q ss_pred             HHHH---HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CCCCCC
Q ss_conf             9997---4158869983344222112468999999851385--110003
Q gi|254780711|r  177 QSAR---DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNP--HEILLV  220 (461)
Q Consensus       177 ~~a~---~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p--~e~~lV  220 (461)
T Consensus        69 ~lak~l~~~g-~~vIvs~is-------p~~~~R~~~R~~~~~~~EVyv~  109 (176)
T PRK05541         69 KLAAFLADQG-MIVIVTTIS-------MFNEIYAYNRKHLPNYFEVYLK  109 (176)
T ss_pred             HHHHHHHHCC-CCEEEEECC-------CCHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999986469-803675227-------9899999999748876899994