HHsearch alignment for GI: 254780711 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00 E-value=0 Score=547.54 Aligned_cols=264 Identities=21% Similarity=0.373 Sum_probs=238.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 87898999999999999998524696999999999999983031112699899999999999998718774210002588
Q gi|254780711|r 20 GSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPS 99 (461)
Q Consensus 20 ~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~ 99 (461)
T Consensus 4 ~~~~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~ik~k~~~~~~~-----~~~vi~~l~~~l~~~~~~~~----~~~~~ 74 (270)
T PRK06731 4 KKEKQESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMI-----TEEVIEYILEDMSSHFNTEN----VFEKE 74 (270)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHHHHCCCC----CCCCC
T ss_conf 2012650999999999999976998899999999999885045532-----99999999999987507665----46799
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
T Consensus 75 ~~vI~lvG~~G~GKTTT~AKLA~~~~~-~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~---~~~~~~~~~~~~~~ 150 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMTRALTYFK 150 (270)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECC---CCHHHHHHHHHHHH
T ss_conf 818999888989889999999999986-79908999838888889999999999819953545---88789999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 7415886998334422211246899999985138511000310111-225688889887635844077641157663303
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGA 258 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~ 258 (461)
T Consensus 151 ~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~-~~i~gvIlTKlD~ta~gG~ 229 (270)
T PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE 229 (270)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCH
T ss_conf 976999999979998714699999999986063898799998687776999999998077-9998899965358997729
Q ss_pred HHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCC
Q ss_conf 677788847873026158672-321001368899877358
Q gi|254780711|r 259 ALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGM 297 (461)
Q Consensus 259 als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGm 297 (461)
T Consensus 230 als~~~~~~~PI~fig~Ge~VpeDi~~~~~~~la~riL~~ 269 (270)
T PRK06731 230 LLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHC
T ss_conf 9999999885979994599970214137999999998304