HHsearch alignment for GI: 254780711 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=100.00 E-value=1.4e-45 Score=368.21 Aligned_cols=250 Identities=23% Similarity=0.260 Sum_probs=203.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99999998524696999999999999983031112699899999999999998718774210002588418996234433
Q gi|254780711|r 32 REIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGS 111 (461)
Q Consensus 32 ~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~Gs 111 (461)
T Consensus 119 ~~l~~~L~~~g~~~~la~~l~~~l~~~---------~~~~~-~~~~~~~~l~~~l~~~~~~-~~~~~~ggV~alVGPTGV 187 (404)
T PRK06995 119 GALFRHLLAAGFSAQLVRMLLENLPAG---------DDAQA-AMDWARSVLASNLPVLGSE-DALMERGGVFALVGPTGV 187 (404)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCC---------CCHHH-HHHHHHHHHHHHCCCCCCC-CCHHCCCCEEEEECCCCC
T ss_conf 999999998799999999999847033---------89789-9999999999746666665-310114755898668887
Q ss_pred CHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 346889999999986148-9507820542210047799998510347422233210368999999999974158869983
Q gi|254780711|r 112 GKTTTTAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILD 190 (461)
Q Consensus 112 GKTTT~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiD 190 (461)
T Consensus 188 GKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~e---L-~~aL~~--l~~~dlILID 261 (404)
T PRK06995 188 GKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD---L-RLALAE--LRNKHIVLID 261 (404)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHH---H-HHHHHH--HCCCCEEEEE
T ss_conf 637589999999999838983799976875478999999999875955999599999---9-999997--0899999980
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
Q ss_conf 344222112468999999851385110003101112-2568888988763584407764115766330367778884787
Q gi|254780711|r 191 TAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKP 269 (461)
Q Consensus 191 TaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~P 269 (461)
T Consensus 262 TaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~-~~~~~~~I~TKLDEt~~~G~iln~~~~~~lP 340 (404)
T PRK06995 262 TVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDTLNEVVQAYR-GPGLAGCILTKLDEAASLGGALDTVIRHKLP 340 (404)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 999897688899999999735788528999779899999999999844-6999839983040679723999999997898
Q ss_pred HHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf 3026158672-32100136889987735862
Q gi|254780711|r 270 IKAIGTGEKI-NDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 270 I~fig~GE~~-~dle~F~p~~~~~riLGmgD 299 (461)
T Consensus 341 lsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~ 371 (404)
T PRK06995 341 LHYVSNGQRVPEDLHVANAKFLLHRAFCAPR 371 (404)
T ss_pred EEEECCCCCCCCCHHCCCHHHHHHHHHHCCC
T ss_conf 5998189958421210898999999862645