HHsearch alignment for GI: 254780711 and conserved domain: PRK07133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.09 E-value=0.0018 Score=46.64 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
T Consensus 37 gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~-~~~d~~~pC~~C~~---------~~~~s~DViEIDAASn~gVDdIReL 106 (718)
T PRK07133 37 GKISHAYLFSGPHGTGKTSVAKIFANALNCS-HKTDLIEPCQNCIE---------NFNNNLDIIEMDAASNNGVDEIREL 106 (718)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHH---------CCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 9975058623899868899999999996799-99999997702143---------0478987377545566888999999
Q ss_pred ---HHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH---------
Q ss_conf ---9999-7415886998334422211246899999985138511000310111225-----688889887---------
Q gi|254780711|r 176 ---TQSA-RDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD--------- 237 (461)
Q Consensus 176 ---~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~--------- 237 (461)
T Consensus 107 ie~v~y~P~~gkYKVyIIDEvHMLS~~A--fNALLKtLEE-PP~hvvFIL-aTTep~KIP~TIlSRCQrFdFkrI~~~~I 182 (718)
T PRK07133 107 RENVKNLPQISKYKIYIIDEVHMLSKSA--FNALLKTLEE-PPKHVIFIL-ATTDVQKIPLTILSRVQRFNFRRISEDVI 182 (718)
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHHCC-CCCCCEEEE-EECCHHHCCHHHHHCCEEEECCCCCHHHH
T ss_conf 9982558877872499996620079999--9999985027-987827999-70882548487741220335888999999
Q ss_pred ----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------635844----077641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
T Consensus 183 ~~~L~~I~~kE~I~~e~eAL~lIA~~a~GSmR--DAlSlLDQ----v~~f~ng~it--------~k~v~~~~Gl~~~~~~ 248 (718)
T PRK07133 183 VHQLENILEKEKIKYEKNALKLIASLASGSLR--DALSIADQ----VSIFGNGNIT--------LKNVNELFGLVSNEIV 248 (718)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH----HHHHCCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf 99999999985997789999999997688488--89879999----9985489872--------9999999676557999
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 998742112--6789988865310463799999999998
Q gi|254780711|r 304 VEKAARNLN--EKQAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 304 ~e~~~~~~d--~~~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
T Consensus 249 i~~~n~~~~~~~~~~l~~l~~~~~~gid~~~l~~~li~~ 287 (718)
T PRK07133 249 INFLNLLYSKNIKEVLEKLNQLKFQGIDPELLVISLINL 287 (718)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999986169999999999997588999999999999