HHsearch alignment for GI: 254780711 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=97.02 E-value=0.016 Score=39.38 Aligned_cols=143 Identities=16% Similarity=0.209 Sum_probs=76.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 9985246969999999999999830-31112699899999999-999998718774210002588418996234433346
Q gi|254780711|r 37 TFLEADVSLEVVQSFSKRVQEKAKG-EKILRSIQPGQMVIKIV-HDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKT 114 (461)
Q Consensus 37 aLLeaDV~~~vv~~~~~~Ik~k~~~-~~~~~~~~~~~~i~kiv-~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKT 114 (461)
T Consensus 48 ~Lle~E~~~R~~rr~~rrlk~A~fp~~ktLe~fDf~--~~p~i~~~~i~~L~~~~----~fi~~~~-Nvil~Gp~GtGKT 120 (269)
T PRK08181 48 AIAEHEIAERARRRIERHLAEAHLPPGKTLDSFDFE--AVPMISKAQVMALAAGD----SWLAKGA-NLLLFGPPGGGKS 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC--CCCCCCHHHHHHHHCCC----HHHHCCC-EEEEECCCCCCHH
T ss_conf 999999999999999999986897998886547855--68998999999996567----5886487-0899899998788
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88999999998614895078205422100477999985103474222332103689999999999741588699833442
Q gi|254780711|r 115 TTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGR 194 (461)
Q Consensus 115 TT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR 194 (461)
T Consensus 121 hLA~Alg~~A~~-~G~~V~f~~~~~L----~~~L~~a-~---------~~~~~-----~~~~~--~l~~~dLLIiDe~G~ 178 (269)
T PRK08181 121 HLAAAIGLALIE-NGWRVLFTRTTDL----VQKLQVA-R---------RELQL-----ESAIA--KLDKFDLLILDDLAY 178 (269)
T ss_pred HHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH-H---------HCCCH-----HHHHH--HHHCCCEEEEHHCCC
T ss_conf 999999999998-7993999789999----9999997-7---------55839-----99999--974446012201056
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 22112468999999
Q gi|254780711|r 195 NHINDSLMQEISEI 208 (461)
Q Consensus 195 ~~~d~~lm~El~~i 208 (461)
T Consensus 179 ~~~~~~~~~~lf~l 192 (269)
T PRK08181 179 VTKDQAETSVLFEL 192 (269)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 67998999999999