HHsearch alignment for GI: 254780711 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=96.86 E-value=0.023 Score=38.31 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=60.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 189962344333468899999999861489507820542210047799998510347422233-2103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI-PEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~-~~~dp~~i~~~a~~~a 179 (461)
T Consensus 61 RivEi~G~esSGKTtlal~~iaeaQk~Gg-~~a~iD--aE~a--ld--~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~L 133 (350)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGG-TAAFID--AEHA--LD--PVYAKKLGVDIDNLLVSQPDTGEQALEIADAL 133 (350)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEE--ECCC--CC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf 08999889877799999999999997599-479996--0002--79--88999849771571785686799999999999
Q ss_pred H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf 7-415886998334422211246
Q gi|254780711|r 180 R-DGGYDAVILDTAGRNHINDSL 201 (461)
Q Consensus 180 ~-~~~~D~iiiDTaGR~~~d~~l 201 (461)
T Consensus 134 vrsg~vd~IVvDSVaAL~pk~Ei 156 (350)
T PRK09354 134 VRSGAVDLIVVDSVAALVPKAEI 156 (350)
T ss_pred HHCCCCCEEEEECCCCCCCHHHH
T ss_conf 85488418998253345768887