HHsearch alignment for GI: 254780711 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=96.96 E-value=0.0028 Score=45.28 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=61.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-HCC--CCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCC-CCCCCHHHHHHHHH
Q ss_conf 8996234433346889999999986-148--9507820542210047799--9985103474222-33210368999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKT-LKK--KKILMASLDVHRPAAQEQL--RYLGEQIQVDTLE-VIPEQSPEKIAIRA 175 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~-~~~--~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~-~~~~~dp~~i~~~a 175 (461)
T Consensus 164 ~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~-LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~Ti-HRL 241 (607)
T PRK10875 164 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL-HRL 241 (607)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE-EECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEH-HHH
T ss_conf 78996799987788999999999996458997089-9882289999999999878753476656663376556658-975
Q ss_pred HHH------HH---H--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCH
Q ss_conf 999------97---4--1588699833442221124689999998513851-10003101
Q gi|254780711|r 176 TQS------AR---D--GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADA 223 (461)
Q Consensus 176 ~~~------a~---~--~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da 223 (461)
T Consensus 242 Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl~Lm~~---LL~Alp~~aRLILvGD~ 296 (607)
T PRK10875 242 LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDLPMMSR---LIDALPDHARVIFLGDR 296 (607)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHHHHHHH---HHHHCCCCCEEEEECCH
T ss_conf 296789876565779999889899907336--65999999---99828999889996562