HHsearch alignment for GI: 254780711 and conserved domain: PRK10875

>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=96.96  E-value=0.0028  Score=45.28  Aligned_cols=115  Identities=20%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-HCC--CCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCC-CCCCCHHHHHHHHH
Q ss_conf             8996234433346889999999986-148--9507820542210047799--9985103474222-33210368999999
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKT-LKK--KKILMASLDVHRPAAQEQL--RYLGEQIQVDTLE-VIPEQSPEKIAIRA  175 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~-~~~--~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~-~~~~~dp~~i~~~a  175 (461)
T Consensus       164 ~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~-LaAPTGKAAaRL~Esi~~~~~~l~~~~~~~~~~p~~a~Ti-HRL  241 (607)
T PRK10875        164 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL-HRL  241 (607)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEE-EECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEH-HHH
T ss_conf             78996799987788999999999996458997089-9882289999999999878753476656663376556658-975


Q ss_pred             HHH------HH---H--CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCH
Q ss_conf             999------97---4--1588699833442221124689999998513851-10003101
Q gi|254780711|r  176 TQS------AR---D--GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADA  223 (461)
Q Consensus       176 ~~~------a~---~--~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da  223 (461)
T Consensus       242 Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl~Lm~~---LL~Alp~~aRLILvGD~  296 (607)
T PRK10875        242 LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDLPMMSR---LIDALPDHARVIFLGDR  296 (607)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHHHHHHH---HHHHCCCCCEEEEECCH
T ss_conf             296789876565779999889899907336--65999999---99828999889996562