HHsearch alignment for GI: 254780711 and conserved domain: PRK11131

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=98.05  E-value=8.7e-05  Score=56.74  Aligned_cols=132  Identities=23%  Similarity=0.349  Sum_probs=87.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCC-----CCCHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742-----2233-----2103689
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVI-----PEQSPEK  170 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~-----~~~dp~~  170 (461)
T Consensus        90 qVvii~GeTGsGKTTQiPq~~le~g--~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VRf~~~~s~~t~i~  167 (1295)
T PRK11131         90 QVVIVAGETGSGKTTQLPKICLELG--RGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK  167 (1295)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC--CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf             9699976899987889999999627--99999899779659999999999999819998998888945698879997799


Q ss_pred             HHHHHHHH------HHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH
Q ss_conf             99999999------9741588699833442221124-6899999985138511000310111225688889887
Q gi|254780711|r  171 IAIRATQS------ARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD  237 (461)
Q Consensus       171 i~~~a~~~------a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~  237 (461)
T Consensus       168 ~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~-~R~dLKvIimSATi--d~e~fs~yF~  238 (1295)
T PRK11131        168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVIITSATI--DPERFSRHFN  238 (1295)
T ss_pred             EECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCC--CHHHHHHHCC
T ss_conf             97656999986209987887779986855688019999999999983-39998899955868--9799996579