HHsearch alignment for GI: 254780711 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=98.05 E-value=8.7e-05 Score=56.74 Aligned_cols=132 Identities=23% Similarity=0.349 Sum_probs=87.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC-----CCCC-----CCCHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742-----2233-----2103689
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT-----LEVI-----PEQSPEK 170 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~-----~~~~-----~~~dp~~ 170 (461)
T Consensus 90 qVvii~GeTGsGKTTQiPq~~le~g--~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~VRf~~~~s~~t~i~ 167 (1295)
T PRK11131 90 QVVIVAGETGSGKTTQLPKICLELG--RGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK 167 (1295)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC--CCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 9699976899987889999999627--99999899779659999999999999819998998888945698879997799
Q ss_pred HHHHHHHH------HHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH
Q ss_conf 99999999------9741588699833442221124-6899999985138511000310111225688889887
Q gi|254780711|r 171 IAIRATQS------ARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD 237 (461)
Q Consensus 171 i~~~a~~~------a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~ 237 (461)
T Consensus 168 ~~TdGiLL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~-~R~dLKvIimSATi--d~e~fs~yF~ 238 (1295)
T PRK11131 168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVIITSATI--DPERFSRHFN 238 (1295)
T ss_pred EECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCC--CHHHHHHHCC
T ss_conf 97656999986209987887779986855688019999999999983-39998899955868--9799996579