HHsearch alignment for GI: 254780711 and conserved domain: PRK12323

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=97.62  E-value=0.011  Score=40.80  Aligned_cols=216  Identities=17%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEE-----EECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCH
Q ss_conf             88418996234433346889999999986148-9507-----820542210047799998510347422233----2103
Q gi|254780711|r   98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKIL-----MASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQS  167 (461)
Q Consensus        98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~-----lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~d  167 (461)
T Consensus        36 r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~--------C~~i~~g~~~d~~EiDaas~~~v~  107 (721)
T PRK12323         36 RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA--------CTEIDAGRFVDYIEMDAASNRGVD  107 (721)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHH
T ss_conf             975447502799888989999999997689986678987887877654--------687756898764774367678889


Q ss_pred             HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-H----HHHHHHHHHH----
Q ss_conf             6899999999997-4158869983344222112468999999851385110003101112-2----5688889887----
Q gi|254780711|r  168 PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-Q----DAVHLARNFD----  237 (461)
Q Consensus       168 p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q----~a~~~a~~F~----  237 (461)
T Consensus       108 ~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~--afnalLKtlEeP-P~hv~Fil-aTT~~~Kip~TilSRc~~f~~~~~  183 (721)
T PRK12323        108 EMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQM  183 (721)
T ss_pred             HHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCC
T ss_conf             99999985455887664469998540005899--999999840179-75538999-438634485889877654234789


Q ss_pred             ---------------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf             ---------------6358440----776411576633036777888478730261586723210013688998773586
Q gi|254780711|r  238 ---------------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMG  298 (461)
Q Consensus       238 ---------------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmg  298 (461)
T Consensus       184 ~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--Dalslld---Qaia~-~~g~-~~-------~~~v~~mlg~~  249 (721)
T PRK12323        184 PPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMR--DALSLTD---QAIAY-SAGN-VS-------EEAVRGMLGAI  249 (721)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHH---HHHHH-CCCC-CC-------HHHHHHHHCCC
T ss_conf             9999999999999983997799999999997589647--6888999---99986-5896-26-------99999986888


Q ss_pred             CHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             2788999874211267899--8886531046379999999999
Q gi|254780711|r  299 DVVSLVEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       299 D~~~l~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
T Consensus       250 d~~~~~~ll~al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~  292 (721)
T PRK12323        250 DQRYLVRLLDALAAEDGAAVLAIADEMADRSLSFAGALQDLAS  292 (721)
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7789999999999558999999999999868899999999999