HHsearch alignment for GI: 254780711 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=97.55 E-value=0.0054 Score=43.05 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=54.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHH
Q ss_conf 58841899623443334688999999998614--895078205422100477999985103474222332--10368999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK--KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP--EQSPEKIA 172 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~--~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~--~~dp~~i~ 172 (461)
T Consensus 34 ~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~d~i 109 (337)
T PRK12402 34 GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKK-YLVED--PRFAHFYDDPKRKYKSVIDNF 109 (337)
T ss_pred CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC-EEECC--CCHHHHHCCHHHCCCCHHHHH
T ss_conf 99876-988892984899999999999679975678333116531135640-01016--642344201533277378999
Q ss_pred HHHHHHHH-----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999997-----4158869983344222112468999999851
Q gi|254780711|r 173 IRATQSAR-----DGGYDAVILDTAGRNHINDSLMQEISEIKSL 211 (461)
Q Consensus 173 ~~a~~~a~-----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~ 211 (461)
T Consensus 110 ~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq--~aLlk~lEe 151 (337)
T PRK12402 110 KHILKEYASMRPLSADYKLILFDNAEALREDAQ--QALRRIMER 151 (337)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH--HHHHHHHHC
T ss_conf 999999861488778804999707131799999--999988740