HHsearch alignment for GI: 254780711 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=0 Score=432.49 Aligned_cols=267 Identities=18% Similarity=0.247 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r 30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ 109 (461)
Q Consensus 30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~ 109 (461)
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~v~~~l~~~i~~~i~~~~~-~-~~~~k~~vi~lVGPT 183 (388)
T PRK12723 110 TILKIEDILRSNDFSESYIKDINEFIKREFSLSD----LDDYDKVRDSVIIYIAKTIKCSGS-I-IDNLKKRIFILVGPT 183 (388)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHCCCCC-C-CCCCCCEEEEEECCC
T ss_conf 5899999998675579999999999998722122----440879999999999976223666-5-335576289998998
Q ss_pred CCCHHHHHHHHHHHHHHHCCC---CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 333468899999999861489---50782054221004779999851034742223321036899999999997415886
Q gi|254780711|r 110 GSGKTTTTAKIAYHLKTLKKK---KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 110 GsGKTTT~aKLA~~~~~~~~~---kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
T Consensus 184 GvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~~--~~~~D~ 257 (388)
T PRK12723 184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEITQ--SKDFDL 257 (388)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHHH--HCCCCE
T ss_conf 875787999999999986267677379998078758899999999999788069857889999----99997--249999
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 99833442221124689999998513851-10003101112256-88889887635844077641157663303677788
Q gi|254780711|r 187 VILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALTGQDA-VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRT 264 (461)
Q Consensus 187 iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~Gq~a-~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~ 264 (461)
T Consensus 258 IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~ 336 (388)
T PRK12723 258 VLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLIH 336 (388)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 99958998856899999999999741898459999879899999999999842-79998499983227898669999999
Q ss_pred HHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHC--CCCHHHHHHHHHH
Q ss_conf 847873026158672-32100136889987735--8627889998742
Q gi|254780711|r 265 VTGKPIKAIGTGEKI-NDLENFFPDRIANRILG--MGDVVSLVEKAAR 309 (461)
Q Consensus 265 ~~~~PI~fig~GE~~-~dle~F~p~~~~~riLG--mgD~~~l~e~~~~ 309 (461)
T Consensus 337 ~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~~~~~~ 384 (388)
T PRK12723 337 EMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFIRKLKS 384 (388)
T ss_pred HHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 988886999389968302033899999999848714546999999850