HHsearch alignment for GI: 254780711 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00  E-value=0  Score=432.49  Aligned_cols=267  Identities=18%  Similarity=0.247  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r   30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ  109 (461)
Q Consensus        30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~  109 (461)
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~v~~~l~~~i~~~i~~~~~-~-~~~~k~~vi~lVGPT  183 (388)
T PRK12723        110 TILKIEDILRSNDFSESYIKDINEFIKREFSLSD----LDDYDKVRDSVIIYIAKTIKCSGS-I-IDNLKKRIFILVGPT  183 (388)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHCCCCC-C-CCCCCCEEEEEECCC
T ss_conf             5899999998675579999999999998722122----440879999999999976223666-5-335576289998998


Q ss_pred             CCCHHHHHHHHHHHHHHHCCC---CEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             333468899999999861489---50782054221004779999851034742223321036899999999997415886
Q gi|254780711|r  110 GSGKTTTTAKIAYHLKTLKKK---KILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA  186 (461)
Q Consensus       110 GsGKTTT~aKLA~~~~~~~~~---kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~  186 (461)
T Consensus       184 GvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~----~~l~~--~~~~D~  257 (388)
T PRK12723        184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK----EEITQ--SKDFDL  257 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHH----HHHHH--HCCCCE
T ss_conf             875787999999999986267677379998078758899999999999788069857889999----99997--249999


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHCCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf             99833442221124689999998513851-10003101112256-88889887635844077641157663303677788
Q gi|254780711|r  187 VILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALTGQDA-VHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRT  264 (461)
Q Consensus       187 iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~Gq~a-~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~  264 (461)
T Consensus       258 IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~~i~~~f~-~~~~~~~I~TKlDEt~~~G~~l~~~~  336 (388)
T PRK12723        258 VLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLIH  336 (388)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf             99958998856899999999999741898459999879899999999999842-79998499983227898669999999


Q ss_pred             HHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHC--CCCHHHHHHHHHH
Q ss_conf             847873026158672-32100136889987735--8627889998742
Q gi|254780711|r  265 VTGKPIKAIGTGEKI-NDLENFFPDRIANRILG--MGDVVSLVEKAAR  309 (461)
Q Consensus       265 ~~~~PI~fig~GE~~-~dle~F~p~~~~~riLG--mgD~~~l~e~~~~  309 (461)
T Consensus       337 ~~~~Pi~yit~GQ~VPdDie~a~p~~~~~~ilG~~~~~~~~~~~~~~~  384 (388)
T PRK12723        337 EMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISDDAEFIRKLKS  384 (388)
T ss_pred             HHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             988886999389968302033899999999848714546999999850