HHsearch alignment for GI: 254780711 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=0 Score=452.23 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=188.7
Q ss_pred HHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999871877---421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 79 HDELVEVLGKE---SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 79 ~~eL~~lLg~~---~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
T Consensus 184 ~~~~~~~~~~~~~~~~~~~l~~g~--VIaLVGvnGvGKTTTiAKLA~~l~~-~gkkV~LVAaDTFRaAAiEQLk~~g~rl 260 (407)
T PRK12726 184 TDWFVPYLSGKLAVEDSFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKL 260 (407)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCC--EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 689999753897703202303690--8999899989789999999999997-7991799970667788999999999997
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf 47422233210368999999999974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN 235 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~ 235 (461)
T Consensus 261 gVpV~~---~~dpa~l~~av~~~a~~~~~DvVIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~qa~~ 337 (407)
T PRK12726 261 DVELIV---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred CCEEEE---ECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 964998---18889999999999862899989996999881349999999998733289669999367566999999998
Q ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf 87635844077641157663303677788847873026158672-32100136889987735862
Q gi|254780711|r 236 FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGD 299 (461)
Q Consensus 236 F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD 299 (461)
T Consensus 338 ~~~~v~ItGiILTKLDgtAKGG~aLSi~~~~~lPI~fIG~GEkIPEDi~~~~~~~l~~R~l~~~~ 402 (407)
T PRK12726 338 KLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDR 402 (407)
T ss_pred HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHH
T ss_conf 70479998799970147898539999999988897999479999701202898999999846316