HHsearch alignment for GI: 254780711 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00  E-value=0  Score=452.23  Aligned_cols=215  Identities=23%  Similarity=0.329  Sum_probs=188.7

Q ss_pred             HHHHHHHHCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf             99999871877---421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r   79 HDELVEVLGKE---SIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI  155 (461)
Q Consensus        79 ~~eL~~lLg~~---~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~  155 (461)
T Consensus       184 ~~~~~~~~~~~~~~~~~~~l~~g~--VIaLVGvnGvGKTTTiAKLA~~l~~-~gkkV~LVAaDTFRaAAiEQLk~~g~rl  260 (407)
T PRK12726        184 TDWFVPYLSGKLAVEDSFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADKL  260 (407)
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCC--EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             689999753897703202303690--8999899989789999999999997-7991799970667788999999999997


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH
Q ss_conf             47422233210368999999999974158869983344222112468999999851385110003101112256888898
Q gi|254780711|r  156 QVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN  235 (461)
Q Consensus       156 ~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~  235 (461)
T Consensus       261 gVpV~~---~~dpa~l~~av~~~a~~~~~DvVIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~qa~~  337 (407)
T PRK12726        261 DVELIV---ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP  337 (407)
T ss_pred             CCEEEE---ECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             964998---18889999999999862899989996999881349999999998733289669999367566999999998


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCC
Q ss_conf             87635844077641157663303677788847873026158672-32100136889987735862
Q gi|254780711|r  236 FDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGD  299 (461)
Q Consensus       236 F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD  299 (461)
T Consensus       338 ~~~~v~ItGiILTKLDgtAKGG~aLSi~~~~~lPI~fIG~GEkIPEDi~~~~~~~l~~R~l~~~~  402 (407)
T PRK12726        338 KLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVGTDR  402 (407)
T ss_pred             HHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCHH
T ss_conf             70479998799970147898539999999988897999479999701202898999999846316