HHsearch alignment for GI: 254780711 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=6.1e-41 Score=332.60 Aligned_cols=237 Identities=24% Similarity=0.330 Sum_probs=187.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 99852469699999999999998303111269989999999999999871877421000258841899623443334688
Q gi|254780711|r 37 TFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTT 116 (461)
Q Consensus 37 aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT 116 (461)
T Consensus 298 rL~~~GfS~~Lar~L~~~lP---------~~~~~~~-a~~~ll~~La~~Lpv~~~d~-~~~gG--v~AlvGpTGvGKTTT 364 (557)
T PRK12727 298 LMDDYGFDAGLTRDVAMQIP---------ADTELHR-GRGLMLGLLSKRLPVAPVDP-LERGG--VIALVGPTGAGKTTT 364 (557)
T ss_pred HHHHCCCCHHHHHHHHHHCC---------CCCCHHH-HHHHHHHHHHHHCCCCCCCH-HHCCC--EEEEECCCCCCCHHH
T ss_conf 99976699999999997483---------3278889-99999999996287777751-54076--478743777673117
Q ss_pred HHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9999999986148-950782054221004779999851034742223321036899999999997415886998334422
Q gi|254780711|r 117 TAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 117 ~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
T Consensus 365 ~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l----~~~l~~--l~~~~lvliDTaG~~ 438 (557)
T PRK12727 365 IAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESL----LDLLER--LRDYKLVLIDTAGMG 438 (557)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHH----HHHHHH--HCCCCEEEEECCCCC
T ss_conf 99999999997399818999726640879999999999839757982899999----999998--369998999499988
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE
Q ss_conf 211246899999985138511000310111-2256888898876358440776411576633036777888478730261
Q gi|254780711|r 196 HINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG 274 (461)
Q Consensus 196 ~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig 274 (461)
T Consensus 439 ~rd~~~~~~~~~l~-~~~~~~~~Lvl~a~~~~~~l~~~~~~~~-~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t 516 (557)
T PRK12727 439 QRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT 516 (557)
T ss_pred CCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 46999999999875-1477635999968899899999999853-799874899614367870399999999689828975
Q ss_pred CCCCC-CCCCCCCHHHHHHHH
Q ss_conf 58672-321001368899877
Q gi|254780711|r 275 TGEKI-NDLENFFPDRIANRI 294 (461)
Q Consensus 275 ~GE~~-~dle~F~p~~~~~ri 294 (461)
T Consensus 517 ~GQ~VPeDi~~a~~~~Lv~Ra 537 (557)
T PRK12727 517 DGQRVPDDLHRANAASLVLRL 537 (557)
T ss_pred CCCCCCCCHHHCCHHHHHHHH
T ss_conf 898285236438999999999