HHsearch alignment for GI: 254780711 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00  E-value=6.1e-41  Score=332.60  Aligned_cols=237  Identities=24%  Similarity=0.330  Sum_probs=187.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf             99852469699999999999998303111269989999999999999871877421000258841899623443334688
Q gi|254780711|r   37 TFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTT  116 (461)
Q Consensus        37 aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT  116 (461)
T Consensus       298 rL~~~GfS~~Lar~L~~~lP---------~~~~~~~-a~~~ll~~La~~Lpv~~~d~-~~~gG--v~AlvGpTGvGKTTT  364 (557)
T PRK12727        298 LMDDYGFDAGLTRDVAMQIP---------ADTELHR-GRGLMLGLLSKRLPVAPVDP-LERGG--VIALVGPTGAGKTTT  364 (557)
T ss_pred             HHHHCCCCHHHHHHHHHHCC---------CCCCHHH-HHHHHHHHHHHHCCCCCCCH-HHCCC--EEEEECCCCCCCHHH
T ss_conf             99976699999999997483---------3278889-99999999996287777751-54076--478743777673117


Q ss_pred             HHHHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9999999986148-950782054221004779999851034742223321036899999999997415886998334422
Q gi|254780711|r  117 TAKIAYHLKTLKK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       117 ~aKLA~~~~~~~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
T Consensus       365 ~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l----~~~l~~--l~~~~lvliDTaG~~  438 (557)
T PRK12727        365 IAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESL----LDLLER--LRDYKLVLIDTAGMG  438 (557)
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHH----HHHHHH--HCCCCEEEEECCCCC
T ss_conf             99999999997399818999726640879999999999839757982899999----999998--369998999499988


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE
Q ss_conf             211246899999985138511000310111-2256888898876358440776411576633036777888478730261
Q gi|254780711|r  196 HINDSLMQEISEIKSLTNPHEILLVADALT-GQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG  274 (461)
Q Consensus       196 ~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig  274 (461)
T Consensus       439 ~rd~~~~~~~~~l~-~~~~~~~~Lvl~a~~~~~~l~~~~~~~~-~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t  516 (557)
T PRK12727        439 QRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRFA-HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVT  516 (557)
T ss_pred             CCCHHHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             46999999999875-1477635999968899899999999853-799874899614367870399999999689828975


Q ss_pred             CCCCC-CCCCCCCHHHHHHHH
Q ss_conf             58672-321001368899877
Q gi|254780711|r  275 TGEKI-NDLENFFPDRIANRI  294 (461)
Q Consensus       275 ~GE~~-~dle~F~p~~~~~ri  294 (461)
T Consensus       517 ~GQ~VPeDi~~a~~~~Lv~Ra  537 (557)
T PRK12727        517 DGQRVPDDLHRANAASLVLRL  537 (557)
T ss_pred             CCCCCCCCHHHCCHHHHHHHH
T ss_conf             898285236438999999999