HHsearch alignment for GI: 254780711 and conserved domain: PRK13234
>PRK13234 nifH nitrogenase reductase; Reviewed.
Probab=97.28 E-value=0.013 Score=40.09 Aligned_cols=208 Identities=19% Similarity=0.134 Sum_probs=114.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------------HHHHHHHH--HC-----------C
Q ss_conf 18996234433346889999999986148950782054221004------------77999985--10-----------3
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAA------------QEQLRYLG--EQ-----------I 155 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA------------~eQL~~~a--~~-----------~ 155 (461)
T Consensus 5 r~IAiYGKGGIGKSTtssNlsAAlA~-~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC
T ss_conf 57999779844587789999999997-79969997489831656876289999708899876498121538789743779
Q ss_pred CCCCCCCC---CCCH----HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HC
Q ss_conf 47422233---2103----6899999999997-4158869983344222112468999999851385110003101--11
Q gi|254780711|r 156 QVDTLEVI---PEQS----PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LT 225 (461)
Q Consensus 156 ~v~~~~~~---~~~d----p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~ 225 (461)
T Consensus 84 gI~CVEsGGPePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCG-----GFAmPir~g~A~evyIVtSge~ms 158 (293)
T PRK13234 84 GIKCVESGGPEPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCG-----GFAMPIRENKAQEIYIVMSGEMMA 158 (293)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-----CCCCCCCCCCCCEEEEEECCCHHH
T ss_conf 848976899899888777131467888877187657999999567766514-----755665458876899994671879
Q ss_pred CHHHHHHHHHHHHH-----CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 22568888988763-----5844077641157663303677788847873026158672321001368899877358627
Q gi|254780711|r 226 GQDAVHLARNFDKI-----VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 226 Gq~a~~~a~~F~~~-----~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~ 300 (461)
T Consensus 159 lyAANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e~~~v~~fa~~~gt~ii~~---------IPrs~~v~~aE~~~---- 225 (293)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTDRELELAEALAKRLGSKLIHF---------VPRDNIVQHAELRR---- 225 (293)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEE---------CCCCHHHHHHHHCC----
T ss_conf 99999999999998632696246899717898537999999999849937997---------79968899999739----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 889998742112678998886531046
Q gi|254780711|r 301 VSLVEKAARNLNEKQAALTAKKIAKGK 327 (461)
Q Consensus 301 ~~l~e~~~~~~d~~~~~~l~~k~~~g~ 327 (461)
T Consensus 226 ~TviE~~P~s~~A~~Yr~LA~~I~~n~ 252 (293)
T PRK13234 226 MTVIEYAPDSKQAGEYRALAEKIHANS 252 (293)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 777896889879999999999998478