HHsearch alignment for GI: 254780711 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=98.55 E-value=1.3e-06 Score=70.68 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH---HCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf 89962-3443334688999999998614895078205422100477999985---10347--422233210368999999
Q gi|254780711|r 102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG---EQIQV--DTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a---~~~~v--~~~~~~~~~dp~~i~~~a 175 (461)
T Consensus 3 vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~v~~iD~Dpq~s~~-----~W~e~a~~~~~~~~~~~v~~-~~~~~~l~~~ 75 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRPLT-----RWKENALRSNTWDPACEVYA-ADELPLLEAA 75 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHH-----HHHHHHHHCCCCCCCCCEEE-CCCHHHHHHH
T ss_conf 79996189987699999999999997-89959999689986889-----99987652589887752340-5652578999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----CCHHCCHHHHH----HHHHHHHHCCCCCEE
Q ss_conf 999974158869983344222112468999999851385110003-----10111225688----889887635844077
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV-----ADALTGQDAVH----LARNFDKIVDLTGII 246 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV-----~da~~Gq~a~~----~a~~F~~~~~i~giI 246 (461)
T Consensus 76 ~e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~AD-----LVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~-~vl 146 (231)
T PRK13849 76 YEDAELQGFDYALADTHGGSSE---LNNTIIASSN-----LLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AIL 146 (231)
T ss_pred HHHHHHCCCCEEEECCCCCCCH---HHHHHHHHCC-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
T ss_conf 9887536998899818997758---9999999789-----899779998667999999999999999972878865-666
Q ss_pred EEECCC
Q ss_conf 641157
Q gi|254780711|r 247 LTRMDG 252 (461)
Q Consensus 247 lTKlD~ 252 (461)
T Consensus 147 ltRv~a 152 (231)
T PRK13849 147 RQRVPV 152 (231)
T ss_pred EEECCH
T ss_conf 540504