HHsearch alignment for GI: 254780711 and conserved domain: PRK13849

>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=98.55  E-value=1.3e-06  Score=70.68  Aligned_cols=135  Identities=19%  Similarity=0.194  Sum_probs=77.0

Q ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH---HCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             89962-3443334688999999998614895078205422100477999985---10347--422233210368999999
Q gi|254780711|r  102 VIMLV-GLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG---EQIQV--DTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus       102 vIllv-Gl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a---~~~~v--~~~~~~~~~dp~~i~~~a  175 (461)
T Consensus         3 vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~v~~iD~Dpq~s~~-----~W~e~a~~~~~~~~~~~v~~-~~~~~~l~~~   75 (231)
T PRK13849          3 LLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRPLT-----RWKENALRSNTWDPACEVYA-ADELPLLEAA   75 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHH-----HHHHHHHHCCCCCCCCCEEE-CCCHHHHHHH
T ss_conf             79996189987699999999999997-89959999689986889-----99987652589887752340-5652578999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-----CCHHCCHHHHH----HHHHHHHHCCCCCEE
Q ss_conf             999974158869983344222112468999999851385110003-----10111225688----889887635844077
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLV-----ADALTGQDAVH----LARNFDKIVDLTGII  246 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV-----~da~~Gq~a~~----~a~~F~~~~~i~giI  246 (461)
T Consensus        76 ~e~~~~~~~D~VIIDtpg~~s~---~~~~Ai~~AD-----LVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~-~vl  146 (231)
T PRK13849         76 YEDAELQGFDYALADTHGGSSE---LNNTIIASSN-----LLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AIL  146 (231)
T ss_pred             HHHHHHCCCCEEEECCCCCCCH---HHHHHHHHCC-----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
T ss_conf             9887536998899818997758---9999999789-----899779998667999999999999999972878865-666


Q ss_pred             EEECCC
Q ss_conf             641157
Q gi|254780711|r  247 LTRMDG  252 (461)
Q Consensus       247 lTKlD~  252 (461)
T Consensus       147 ltRv~a  152 (231)
T PRK13849        147 RQRVPV  152 (231)
T ss_pred             EEECCH
T ss_conf             540504