HHsearch alignment for GI: 254780711 and conserved domain: TIGR00073
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.05 E-value=0.0027 Score=45.35 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=101.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----HHHH
Q ss_conf 025884189962344333468899999999861489507820542210047799998510347422233210----3689
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ----SPEK 170 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~----dp~~ 170 (461)
T Consensus 29 ~~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~--~~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~m 102 (225)
T TIGR00073 29 FDKEGLLVLNFMSSPGSGKTTLIEKLIERLDD--EVKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHM 102 (225)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHH
T ss_conf 98659789980258861158999999998457--89789997553225569999864----9868863688644401667
Q ss_pred HH--HHHHHHHHHCCC-CEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH-HHHHHHHHCCCCC
Q ss_conf 99--999999974158-86998334422--211246899999985138511000310111225688-8898876358440
Q gi|254780711|r 171 IA--IRATQSARDGGY-DAVILDTAGRN--HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH-LARNFDKIVDLTG 244 (461)
Q Consensus 171 i~--~~a~~~a~~~~~-D~iiiDTaGR~--~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~-~a~~F~~~~~i~g 244 (461)
T Consensus 103 v~G~~~~L~~~~ld~~~DlL~IENVGNLvCP~~FdL-----------Ge~~rVvllSVTEGdDk~lKyP~~F~~A---d~ 168 (225)
T TIGR00073 103 VAGAIHALKDLPLDDISDLLLIENVGNLVCPADFDL-----------GEHMRVVLLSVTEGDDKVLKYPAMFKEA---DL 168 (225)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCC-----------CCCCEEEEEEECCCCCCCCCCCHHHHHH---HH
T ss_conf 865875542168887146268864476100673112-----------3563079998658999654661588744---45
Q ss_pred EEEEECCCCCCCC
Q ss_conf 7764115766330
Q gi|254780711|r 245 IILTRMDGDGRGG 257 (461)
Q Consensus 245 iIlTKlD~~akgG 257 (461)
T Consensus 169 ~~inK~DL~~~v~ 181 (225)
T TIGR00073 169 ILINKVDLAEAVG 181 (225)
T ss_pred HHHCHHHHHHHHC
T ss_conf 6214788997707