HHsearch alignment for GI: 254780711 and conserved domain: TIGR00073

>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.05  E-value=0.0027  Score=45.35  Aligned_cols=143  Identities=22%  Similarity=0.303  Sum_probs=101.8

Q ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----HHHH
Q ss_conf             025884189962344333468899999999861489507820542210047799998510347422233210----3689
Q gi|254780711|r   95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ----SPEK  170 (461)
Q Consensus        95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~----dp~~  170 (461)
T Consensus        29 ~~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~--~~K~Avi~GD~~t~~DA~RlR~~----G~~a~~~nTGk~CHLdA~m  102 (225)
T TIGR00073        29 FDKEGLLVLNFMSSPGSGKTTLIEKLIERLDD--EVKIAVIEGDVQTKNDADRLRKY----GVPAIQINTGKECHLDAHM  102 (225)
T ss_pred             HHHCCCEEEEECCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHC----CCEEEEECCCCCCCCHHHH
T ss_conf             98659789980258861158999999998457--89789997553225569999864----9868863688644401667


Q ss_pred             HH--HHHHHHHHHCCC-CEEEEECCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHH-HHHHHHHHCCCCC
Q ss_conf             99--999999974158-86998334422--211246899999985138511000310111225688-8898876358440
Q gi|254780711|r  171 IA--IRATQSARDGGY-DAVILDTAGRN--HINDSLMQEISEIKSLTNPHEILLVADALTGQDAVH-LARNFDKIVDLTG  244 (461)
Q Consensus       171 i~--~~a~~~a~~~~~-D~iiiDTaGR~--~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~-~a~~F~~~~~i~g  244 (461)
T Consensus       103 v~G~~~~L~~~~ld~~~DlL~IENVGNLvCP~~FdL-----------Ge~~rVvllSVTEGdDk~lKyP~~F~~A---d~  168 (225)
T TIGR00073       103 VAGAIHALKDLPLDDISDLLLIENVGNLVCPADFDL-----------GEHMRVVLLSVTEGDDKVLKYPAMFKEA---DL  168 (225)
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCC-----------CCCCEEEEEEECCCCCCCCCCCHHHHHH---HH
T ss_conf             865875542168887146268864476100673112-----------3563079998658999654661588744---45


Q ss_pred             EEEEECCCCCCCC
Q ss_conf             7764115766330
Q gi|254780711|r  245 IILTRMDGDGRGG  257 (461)
Q Consensus       245 iIlTKlD~~akgG  257 (461)
T Consensus       169 ~~inK~DL~~~v~  181 (225)
T TIGR00073       169 ILINKVDLAEAVG  181 (225)
T ss_pred             HHHCHHHHHHHHC
T ss_conf             6214788997707