HHsearch alignment for GI: 254780711 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.71 E-value=0.00011 Score=56.07 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=74.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
T Consensus 129 LiLVTGPTGSGKSTTlAsmIDyI-N~-~~~~HIiTIE-------DPIEyvh~~~~sli~QREvG~DT~sF-~~ALraALR 198 (350)
T TIGR01420 129 LILVTGPTGSGKSTTLASMIDYI-NK-NKAGHIITIE-------DPIEYVHKNKRSLINQREVGLDTLSF-ANALRAALR 198 (350)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HC-CCCCCCEEEE-------CCEEEEECCCEEEEECCCCCCCHHHH-HHHHHHHHC
T ss_conf 38987688986789999999787-40-3888825631-------77314104770245436246754579-999768410
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCHHC-CHHHHHHHHHHHHHCC
Q ss_conf 158869983344222112468999999851385110-00310111-2256888898876358
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEI-LLVADALT-GQDAVHLARNFDKIVD 241 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~-~lV~da~~-Gq~a~~~a~~F~~~~~ 241 (461)
T Consensus 199 eDPDvILi---G-------E~RD~ET~~~AL~AAETGHLV~-gTLHTnsA~~ti~RIid~FP 249 (350)
T TIGR01420 199 EDPDVILI---G-------EMRDLETVELALTAAETGHLVF-GTLHTNSAAKTIERIIDVFP 249 (350)
T ss_pred CCCCEEEE---E-------CCCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_conf 28988998---2-------5562789999998742131567-66664238887677742597