>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .

Probab=96.20 E-value=0.033 Score=37.10 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=109.0 Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCC------------CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 8418996234433346889999999986148------------9507820542210047799998510347422233210 Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK------------KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ 166 (461) Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~------------~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~ 166 (461) T Consensus 364 ~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v-~LaAPTGrAA--kRl~E~TG~~a~TIHRL-lG~ 439 (769) T TIGR01448 364 QDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPV-VLAAPTGRAA--KRLAEVTGLEALTIHRL-LGY 439 (769) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE-EEECCCHHHH--HHCCCCCCCHHHHHHHH-HCC T ss_conf 0948998577888616899999999987168775531245677648-8737743788--85110026212347786-368 Q ss_pred HHHHHHHH-HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHC--CHHHHHHHHHHHHHCCC Q ss_conf 36899999-99999741588699833442221124689999998513851-1000310111--22568888988763584 Q gi|254780711|r 167 SPEKIAIR-ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPH-EILLVADALT--GQDAVHLARNFDKIVDL 242 (461) Q Consensus 167 dp~~i~~~-a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~-e~~lV~da~~--Gq~a~~~a~~F~~~~~i 242 (461) T Consensus 440 ~~~~~~~~k~~~--~~~~~DL~IvDE~SM--~Dt~L~~~l---L~a~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s~~i 512 (769) T TIGR01448 440 GSDTKSENKNLE--DPIDADLLIVDESSM--VDTWLASSL---LAAVPDHARLLLVGDADQLPSVGPGQVLKDLIQSKVI 512 (769) T ss_pred CCCCCCCCHHHC--CCCCCCEEEEECCCH--HHHHHHHHH---HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 988873211011--347877699814621--889999999---8617977779888376888988644089999846886 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHCCCHH-HEECCCCCCCCCCCCHHH-HHHHHHCCCCHHHHHHHHH Q ss_conf 40776411576633036777888478730-261586723210013688-9987735862788999874 Q gi|254780711|r 243 TGIILTRMDGDGRGGAALSMRTVTGKPIK-AIGTGEKINDLENFFPDR-IANRILGMGDVVSLVEKAA 308 (461) Q Consensus 243 ~giIlTKlD~~akgG~als~~~~~~~PI~-fig~GE~~~dle~F~p~~-~~~riLGmgD~~~l~e~~~ 308 (461) T Consensus 513 P~~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~s~~e--~~~~~i~~~v~~~~ 578 (769) T TIGR01448 513 PVTRLTKVYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDRSEPE--EAAKHIPLMVEKIV 578 (769) T ss_pred CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHH T ss_conf 6121211124113664678889873178875232446766777764001010--66678999998877

HHsearch alignment for GI: 254780711 and conserved domain: TIGR01448