HHsearch alignment for GI: 254780711 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.60 E-value=0.00017 Score=54.60 Aligned_cols=134 Identities=22% Similarity=0.341 Sum_probs=104.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC----------CCCCCCCCHHHH
Q ss_conf 1899623443334688999999998614895078205422100477999985103474----------222332103689
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD----------TLEVIPEQSPEK 170 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~----------~~~~~~~~dp~~ 170 (461)
T Consensus 85 QVviiAGETGSGKTTQLPKICLELG--rG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVRF~D~v~~~t~VK 162 (1320)
T TIGR01967 85 QVVIIAGETGSGKTTQLPKICLELG--RGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVRFEDQVSSNTLVK 162 (1320)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEE
T ss_conf 9899972448762023216777542--78765412471468899999999999838898861320366314268854363
Q ss_pred HHHHHHHHHH------HCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 9999999997------41588699833442221124-689999998513851100031011122568888988763
Q gi|254780711|r 171 IAIRATQSAR------DGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 171 i~~~a~~~a~------~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
T Consensus 163 LmTDGiLLAE~Q~DRfL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~r-RPDLKiIITSATI--D~ERFs~HFn~A 235 (1320)
T TIGR01967 163 LMTDGILLAETQQDRFLERYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATI--DPERFSRHFNNA 235 (1320)
T ss_pred EHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCC--CHHHHHHHHCCC
T ss_conf 032235899852002221067336511231123388999888763266-8865257400235--744687862278