HHsearch alignment for GI: 254780711 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.61 E-value=0.00065 Score=50.05 Aligned_cols=117 Identities=25% Similarity=0.298 Sum_probs=58.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899623443334688999999998614895-0782054221004779999851034742223321036899999999997
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
T Consensus 113 WYlviG~~gsGKTt~l~~--------Sgl~fPl---~~~~~~~---~~~g~ggt~~cdwwft------------------ 160 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQN--------SGLKFPL---AERLGAA---ALRGVGGTRNCDWWFT------------------ 160 (1169)
T ss_pred EEEEECCCCCCHHHHHHH--------CCCCCCC---CCCCCHH---HCCCCCCCCCCCEEEE------------------
T ss_conf 589978999866899983--------7998877---4100112---2158899855571652------------------
Q ss_pred HCCCCEEEEECCCCCCCHHH-----------HHHHHHHHHHHCCC-CCCCCCCCH--HCCHH---HHHH-------HHHH
Q ss_conf 41588699833442221124-----------68999999851385-110003101--11225---6888-------8988
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDS-----------LMQEISEIKSLTNP-HEILLVADA--LTGQD---AVHL-------ARNF 236 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~-----------lm~El~~i~~~~~p-~e~~lV~da--~~Gq~---a~~~-------a~~F 236 (461)
T Consensus 161 ---~~AVliDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r-~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El 236 (1169)
T TIGR03348 161 ---DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRR-QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL 236 (1169)
T ss_pred ---CCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---787999479760268886400189999999999864898-9987689997899974789999999999999999999
Q ss_pred HHHCCCC---CEEEEECCCCC
Q ss_conf 7635844---07764115766
Q gi|254780711|r 237 DKIVDLT---GIILTRMDGDG 254 (461)
Q Consensus 237 ~~~~~i~---giIlTKlD~~a 254 (461)
T Consensus 237 ~~~lg~~~PVYv~~TK~Dll~ 257 (1169)
T TIGR03348 237 REQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHCCCCCEEEEEECHHHHH
T ss_conf 998299877599866401230