HHsearch alignment for GI: 254780711 and conserved domain: TIGR03348

>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.61  E-value=0.00065  Score=50.05  Aligned_cols=117  Identities=25%  Similarity=0.298  Sum_probs=58.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             899623443334688999999998614895-0782054221004779999851034742223321036899999999997
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
T Consensus       113 WYlviG~~gsGKTt~l~~--------Sgl~fPl---~~~~~~~---~~~g~ggt~~cdwwft------------------  160 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQN--------SGLKFPL---AERLGAA---ALRGVGGTRNCDWWFT------------------  160 (1169)
T ss_pred             EEEEECCCCCCHHHHHHH--------CCCCCCC---CCCCCHH---HCCCCCCCCCCCEEEE------------------
T ss_conf             589978999866899983--------7998877---4100112---2158899855571652------------------


Q ss_pred             HCCCCEEEEECCCCCCCHHH-----------HHHHHHHHHHHCCC-CCCCCCCCH--HCCHH---HHHH-------HHHH
Q ss_conf             41588699833442221124-----------68999999851385-110003101--11225---6888-------8988
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDS-----------LMQEISEIKSLTNP-HEILLVADA--LTGQD---AVHL-------ARNF  236 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~-----------lm~El~~i~~~~~p-~e~~lV~da--~~Gq~---a~~~-------a~~F  236 (461)
T Consensus       161 ---~~AVliDtaGry~~Q~~~~~~d~~~W~~fL~lLkk~R~r-~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El  236 (1169)
T TIGR03348       161 ---DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRR-QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQEL  236 (1169)
T ss_pred             ---CCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ---787999479760268886400189999999999864898-9987689997899974789999999999999999999


Q ss_pred             HHHCCCC---CEEEEECCCCC
Q ss_conf             7635844---07764115766
Q gi|254780711|r  237 DKIVDLT---GIILTRMDGDG  254 (461)
Q Consensus       237 ~~~~~i~---giIlTKlD~~a  254 (461)
T Consensus       237 ~~~lg~~~PVYv~~TK~Dll~  257 (1169)
T TIGR03348       237 REQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHCCCCCEEEEEECHHHHH
T ss_conf             998299877599866401230