HHsearch alignment for GI: 254780711 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.28 E-value=0.14 Score=32.33 Aligned_cols=115 Identities=25% Similarity=0.222 Sum_probs=71.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC---HHHHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--998510347422233210---36899999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ---SPEKIAIR 174 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~---dp~~i~~~ 174 (461)
T Consensus 194 g~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs----~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~ 269 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS----AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 86899985467874599999999999866983899925799----99999999998548977666528999899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999974158869983344222112468999999851385110003101
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
T Consensus 270 a~~~l--~~~~l~i~d~~~~ti~--~ir~~~r~~~~~~~~-l~livIDY 313 (421)
T TIGR03600 270 AVDRL--SEKDLYIDDTGGLTVA--QIRSIARRIKRKKGG-LDLIVVDY 313 (421)
T ss_pred HHHHH--HCCCEEEECCCCCCHH--HHHHHHHHHHHHCCC-CCEEEECH
T ss_conf 99986--1687899669988767--899999999986289-86999757