HHsearch alignment for GI: 254780711 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

Probab=96.75  E-value=0.015  Score=39.63  Aligned_cols=87  Identities=23%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9962344333468899999999861-48950782054221004779999851034--74222332103689999999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQEQLRYLGEQIQ--VDTLEVIPEQSPEKIAIRATQSA  179 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~--v~~~~~~~~~dp~~i~~~a~~~a  179 (461)
T Consensus         3 ~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~l-il~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~   74 (144)
T cd00046           3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVL-VLAPT-RELANQVAERLKELFGEGIKVGYLIGGTSIKQ------QEK   74 (144)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECCH-HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH------HHH
T ss_conf             99988997179999999999999756897699-97467-99999999999997488717999961363677------898


Q ss_pred             HHCCCCEEEEECCCCCCC
Q ss_conf             741588699833442221
Q gi|254780711|r  180 RDGGYDAVILDTAGRNHI  197 (461)
Q Consensus       180 ~~~~~D~iiiDTaGR~~~  197 (461)
T Consensus        75 ~~~~~~~ilv~T~~~l~~   92 (144)
T cd00046          75 LLSGKTDIVVGTPGRLLD   92 (144)
T ss_pred             HHCCCCCEEECCHHHHHH
T ss_conf             745898499828899999