HHsearch alignment for GI: 254780711 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.025 Score=37.92 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=56.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799998510347-422233210368999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQV-DTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v-~~~~~~~~~dp~~i~~~a~~~ 178 (461)
T Consensus 25 Ge~~~i~G~nGaGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~----~~~~~~i~~v~QL-SgGqkqrv~i-----A~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPL----EELRRRIGYVPQL-SGGQRQRVAL-----AR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCH----HHHHHCCCCCCCC-CHHHHHHHHH-----HH
T ss_conf 979999878899989999999588479962-89999999997999----9999406087668-8699999999-----99
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9741588699833442221124689999998513
Q gi|254780711|r 179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLT 212 (461)
Q Consensus 179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~ 212 (461)
T Consensus 94 al~~~p~ililDEPt-sgLD~~~~~~l~~~i~~l 126 (157)
T cd00267 94 ALLLNPDLLLLDEPT-SGLDPASRERLLELLREL 126 (157)
T ss_pred HHHCCCCEEEEECCC-CCCCHHHHHHHHHHHHHH
T ss_conf 997099999996987-668999999999999999