HHsearch alignment for GI: 254780711 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.66  E-value=0.19  Score=31.19  Aligned_cols=127  Identities=24%  Similarity=0.246  Sum_probs=57.0

Q ss_pred             EEEECCCCCCHHHHHH-HHHHHHHHH--CCCCEEEECCCCCCCHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9962344333468899-999999861--489507820542210047---7999985103474222332103689999999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTA-KIAYHLKTL--KKKKILMASLDVHRPAAQ---EQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT  176 (461)
Q Consensus       103 IllvGl~GsGKTTT~a-KLA~~~~~~--~~~kV~lv~~Dt~R~aA~---eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~  176 (461)
T Consensus        39 vi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT-rELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~----~  113 (203)
T cd00268          39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT-RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ----I  113 (203)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH----H
T ss_conf             8997579972228888699999861667689669999687-9999999999998505798389998389887999----9


Q ss_pred             HHHHHCCCCEEEEECCCCCCC------------------------HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH
Q ss_conf             999741588699833442221------------------------12468999999851385110003101112256888
Q gi|254780711|r  177 QSARDGGYDAVILDTAGRNHI------------------------NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL  232 (461)
Q Consensus       177 ~~a~~~~~D~iiiDTaGR~~~------------------------d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~  232 (461)
T Consensus       114 ~~l-~~~~-~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l  191 (203)
T cd00268         114 RKL-KRGP-HIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDL  191 (203)
T ss_pred             HHH-HCCC-EEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
T ss_conf             998-5387-59996818999999848865132248999858888747769999999985896777999980499889999


Q ss_pred             HHHH
Q ss_conf             8988
Q gi|254780711|r  233 ARNF  236 (461)
Q Consensus       233 a~~F  236 (461)
T Consensus       192 ~~~~  195 (203)
T cd00268         192 ARKF  195 (203)
T ss_pred             HHHH
T ss_conf             9997