HHsearch alignment for GI: 254780711 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.69 E-value=0.0049 Score=43.37 Aligned_cols=142 Identities=22% Similarity=0.231 Sum_probs=67.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (461)
T Consensus 1 ivG~~N~GKStL~N~L~-------~~~~~~vs~---~~gtT---------~~~-~~~~~~---------------~~~~~ 45 (163)
T cd00880 1 LFGRTNAGKSSLLNALL-------GQEVAIVSP---VPGTT---------TDP-VEYVWE---------------LGPLG 45 (163)
T ss_pred CCCCCCCCHHHHHHHHH-------CCCCCEECC---CCCEE---------CCC-EEEEEE---------------ECCCC
T ss_conf 91979989999999995-------899610169---89986---------564-589999---------------54786
Q ss_pred CEEEEECCCCCCCHHHHHHHH-HHH-HHHCCCCCCCCCCCHHCCHHHHH--HHHHHHHHCCCCCEEEEECCCCCCC--CH
Q ss_conf 869983344222112468999-999-85138511000310111225688--8898876358440776411576633--03
Q gi|254780711|r 185 DAVILDTAGRNHINDSLMQEI-SEI-KSLTNPHEILLVADALTGQDAVH--LARNFDKIVDLTGIILTRMDGDGRG--GA 258 (461)
Q Consensus 185 D~iiiDTaGR~~~d~~lm~El-~~i-~~~~~p~e~~lV~da~~Gq~a~~--~a~~F~~~~~i~giIlTKlD~~akg--G~ 258 (461)
T Consensus 46 ~i~lvDtpG~~~~~~~-~~~~~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~ 124 (163)
T cd00880 46 PVVLIDTPGIDEAGGL-GREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE 124 (163)
T ss_pred EEEEEECCCCCCCCCH-HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHH
T ss_conf 5999727985222310-168999999999868989999878999755669999999971974278853420678789999
Q ss_pred H-----HHHHHHHCCCHHHEE--CCCCCCCC
Q ss_conf 6-----777888478730261--58672321
Q gi|254780711|r 259 A-----LSMRTVTGKPIKAIG--TGEKINDL 282 (461)
Q Consensus 259 a-----ls~~~~~~~PI~fig--~GE~~~dl 282 (461)
T Consensus 125 ~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L 155 (163)
T cd00880 125 LLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 9999999987679985999978989799999