HHsearch alignment for GI: 254780711 and conserved domain: cd00983

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.

Probab=97.05  E-value=0.011  Score=40.60  Aligned_cols=94  Identities=19%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034742223-32103689999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV-IPEQSPEKIAIRATQSA  179 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~-~~~~dp~~i~~~a~~~a  179 (461)
T Consensus        56 Rivei~G~essGKTtlal~~ia~aQk~gg-~~~~i--DaE~--a~d--~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~l  128 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQKLGG-TVAFI--DAEH--ALD--PVYAKKLGVDLDNLLISQPDTGEQALEIADSL  128 (325)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHH--CCC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf             08999889877799999999999873598-39999--6254--259--89999809984675896663899999999997


Q ss_pred             H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf             7-415886998334422211246
Q gi|254780711|r  180 R-DGGYDAVILDTAGRNHINDSL  201 (461)
Q Consensus       180 ~-~~~~D~iiiDTaGR~~~d~~l  201 (461)
T Consensus       129 i~s~~~dliViDSvaal~p~~E~  151 (325)
T cd00983         129 VRSGAVDLIVVDSVAALVPKAEI  151 (325)
T ss_pred             HCCCCCCEEEECCCCCCCCHHHH
T ss_conf             51588767998151123657887