HHsearch alignment for GI: 254780711 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.80 E-value=0.047 Score=35.90 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=55.6
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEECCC-CCCCHHHHHHHHHHH
Q ss_conf 999987187742100025884189962344333468899999999861-----48950782054-221004779999851
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTL-----KKKKILMASLD-VHRPAAQEQLRYLGE 153 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~-----~~~kV~lv~~D-t~R~aA~eQL~~~a~ 153 (461)
T Consensus 6 ~~lD~~L~GGi~-------~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~---~Rl~qia~ 75 (235)
T cd01123 6 KALDELLGGGIE-------TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP---ERLVQIAE 75 (235)
T ss_pred HHHHHHCCCCCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH---HHHHHHHH
T ss_conf 789965079964-------78799999999984999999999998424753678962999953677588---99999999
Q ss_pred CCC---------CCCCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 034---------742223321036899999999997-4158869983344
Q gi|254780711|r 154 QIQ---------VDTLEVIPEQSPEKIAIRATQSAR-DGGYDAVILDTAG 193 (461)
Q Consensus 154 ~~~---------v~~~~~~~~~dp~~i~~~a~~~a~-~~~~D~iiiDTaG 193 (461)
T Consensus 76 ~~~~~~~~~l~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~v~LvVIDSia 125 (235)
T cd01123 76 RFGLDPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHCCCHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECH
T ss_conf 71347245422547963799999999999999987303772399996104