HHsearch alignment for GI: 254780711 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=97.40  E-value=0.0011  Score=48.38  Aligned_cols=52  Identities=27%  Similarity=0.292  Sum_probs=41.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT  159 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~  159 (461)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~----~~~l~~~~~~~g~d~   53 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEES----PEELIENAESLGWDL   53 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC----HHHHHHHHHHCCCCH
T ss_conf             158768999999999999999987-6997899995079----999999999839985