HHsearch alignment for GI: 254780711 and conserved domain: cd01129

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33  E-value=0.0081  Score=41.71  Aligned_cols=122  Identities=22%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD  181 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~  181 (461)
T Consensus        82 lilitGptGSGKtTtl~a~l~~~~~-~~~~i~tiE-dP-----vE~~~~~~~Q~~v~---~~~g~~~~----~~lr~~LR  147 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNT-PEKNIITVE-DP-----VEYQIPGINQVQVN---EKAGLTFA----RGLRAILR  147 (264)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CC-----CCCCCCCCCEEEEC---CCCCCCHH----HHHHHHHC
T ss_conf             8999789999779999999986436-885089986-76-----31456887357616---66687899----99999855


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             158869983344222112468999999851385110003101112256888898876358440776
Q gi|254780711|r  182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIIL  247 (461)
Q Consensus       182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIl  247 (461)
T Consensus       148 ~dPDvi~igEiR----D~eta~~a--~~aa~tGh---lV~tTlHa~~a~~~i~RL~~-lgv~~~~l  203 (264)
T cd01129         148 QDPDIIMVGEIR----DAETAEIA--VQAALTGH---LVLSTLHTNDAPGAITRLLD-MGIESYLL  203 (264)
T ss_pred             CCCCEEEECCCC----CHHHHHHH--HHHHHHCC---EEEEEECCCCHHHHHHHHHH-CCCCHHHH
T ss_conf             699988746889----99999999--99997099---69999703999999999998-29998999