HHsearch alignment for GI: 254780711 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.33 E-value=0.0081 Score=41.71 Aligned_cols=122 Identities=22% Similarity=0.233 Sum_probs=62.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
T Consensus 82 lilitGptGSGKtTtl~a~l~~~~~-~~~~i~tiE-dP-----vE~~~~~~~Q~~v~---~~~g~~~~----~~lr~~LR 147 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNT-PEKNIITVE-DP-----VEYQIPGINQVQVN---EKAGLTFA----RGLRAILR 147 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CC-----CCCCCCCCCEEEEC---CCCCCCHH----HHHHHHHC
T ss_conf 8999789999779999999986436-885089986-76-----31456887357616---66687899----99999855
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 158869983344222112468999999851385110003101112256888898876358440776
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIIL 247 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIl 247 (461)
T Consensus 148 ~dPDvi~igEiR----D~eta~~a--~~aa~tGh---lV~tTlHa~~a~~~i~RL~~-lgv~~~~l 203 (264)
T cd01129 148 QDPDIIMVGEIR----DAETAEIA--VQAALTGH---LVLSTLHTNDAPGAITRLLD-MGIESYLL 203 (264)
T ss_pred CCCCEEEECCCC----CHHHHHHH--HHHHHHCC---EEEEEECCCCHHHHHHHHHH-CCCCHHHH
T ss_conf 699988746889----99999999--99997099---69999703999999999998-29998999