HHsearch alignment for GI: 254780711 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.55 E-value=0.016 Score=39.42 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=42.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233---210368999999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVI---PEQSPEKIAIRATQS 178 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~---~~~dp~~i~~~a~~~ 178 (461)
T Consensus 27 nIlIsG~tGSGKTTll~al~~~i~~--~~rivti-Ed~~El----~l~---~~~~v~l~~~~~~~~~~~~~~-~~~li~~ 95 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP--DERIITI-EDTAEL----QLP---HPNWVRLVTRPGNVEGSGEVT-MADLLRS 95 (186)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC--CCCEEEE-CCCHHH----CCC---CCCEEEEEEECCCCCCCCEEC-HHHHHHH
T ss_conf 8999899999899999999961334--5645984-153540----477---775688886046457865034-9999887
Q ss_pred HHHCCCCEEEEE
Q ss_conf 974158869983
Q gi|254780711|r 179 ARDGGYDAVILD 190 (461)
Q Consensus 179 a~~~~~D~iiiD 190 (461)
T Consensus 96 aLR~~pd~iivG 107 (186)
T cd01130 96 ALRMRPDRIIVG 107 (186)
T ss_pred HCCCCCCEEECC
T ss_conf 366899737317