HHsearch alignment for GI: 254780711 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.08 E-value=0.0094 Score=41.22 Aligned_cols=109 Identities=19% Similarity=0.165 Sum_probs=63.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEECC-CCCCCHHHHHHHHHH-H
Q ss_conf 999871877421000258841899623443334688999999998614-----895078205-422100477999985-1
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK-----KKKILMASL-DVHRPAAQEQLRYLG-E 153 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~-----~~kV~lv~~-Dt~R~aA~eQL~~~a-~ 153 (461)
T Consensus 7 ~lD~~LgGGi---p--~--G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~~~~~~ 79 (226)
T cd01393 7 ALDELLGGGI---P--T--GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred HHHHHHCCCC---C--C--CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8998857998---8--8--8399999999998999999999998542211699961999955775319999999876032
Q ss_pred -----CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -----0347422233210368999999999974158869983344222
Q gi|254780711|r 154 -----QIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH 196 (461)
Q Consensus 154 -----~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~ 196 (461)
T Consensus 80 ~~~~~l~~i~~~~~~~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~ 127 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred CHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf 667764333684379999999999999987524784289993220011