HHsearch alignment for GI: 254780711 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.77 E-value=0.0004 Score=51.72 Aligned_cols=148 Identities=18% Similarity=0.257 Sum_probs=78.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88418996234433346889999999986148950782054221004779999851034742223321036899999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQ 177 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~ 177 (461)
T Consensus 40 g~p-~VaivG~PNvGKSTLlN~L~g-------~~~~v-~-~------------------~~~tT----~d~~~---~~i~ 84 (204)
T cd01878 40 GIP-TVALVGYTNAGKSTLFNALTG-------ADVYA-E-D------------------QLFAT----LDPTT---RRLR 84 (204)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHC-------CCCEE-E-C------------------CCCCC----CCCEE---EEEE
T ss_conf 998-799988999989999999948-------99634-1-5------------------67764----57636---6899
Q ss_pred HHHHCCCCEEEEECCC-CCCCHHHHHHHHHH-HHHHCCCCCCCCCCCHHCC--HHHHHHHHHHHHHCCCCC----EEEEE
Q ss_conf 9974158869983344-22211246899999-9851385110003101112--256888898876358440----77641
Q gi|254780711|r 178 SARDGGYDAVILDTAG-RNHINDSLMQEISE-IKSLTNPHEILLVADALTG--QDAVHLARNFDKIVDLTG----IILTR 249 (461)
Q Consensus 178 ~a~~~~~D~iiiDTaG-R~~~d~~lm~El~~-i~~~~~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i~g----iIlTK 249 (461)
T Consensus 85 --~~~~~~i~l~DT~G~i~~~p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK 162 (204)
T cd01878 85 --LPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred --ECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf --569977999836864467837899999999999973989999997998536677999999999806555760788867
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf 1576633036777888478730261--586723210
Q gi|254780711|r 250 MDGDGRGGAALSMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 250 lD~~akgG~als~~~~~~~PI~fig--~GE~~~dle 283 (461)
T Consensus 163 iDl~~~~-~~~~~~~~~~~~~i~ISA~~g~Gid~L~ 197 (204)
T cd01878 163 IDLLDDE-ELEERLEAGRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred CCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 0479957-5899997089987999886894999999