HHsearch alignment for GI: 254780711 and conserved domain: cd01879
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=95.87 E-value=0.012 Score=40.55 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=69.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (461)
T Consensus 1 ivG~pNvGKSTL~N~L~g-------~~~~-vs-~------------------~pgtT----rd~~~------~~~~~~~~ 43 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG-------ARQK-VG-N------------------WPGVT----VEKKE------GRFKLGGK 43 (158)
T ss_pred CCCCCCCCHHHHHHHHHC-------CCCE-EC-C------------------CCCCE----EEEEE------EEEEECCE
T ss_conf 979898889999999959-------9864-61-7------------------89827----63478------89962993
Q ss_pred CEEEEECCCCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHH-
Q ss_conf 869983344222112468999--9998513851100031011122568888988763584-407764115766330367-
Q gi|254780711|r 185 DAVILDTAGRNHINDSLMQEI--SEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDL-TGIILTRMDGDGRGGAAL- 260 (461)
Q Consensus 185 D~iiiDTaGR~~~d~~lm~El--~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i-~giIlTKlD~~akgG~al- 260 (461)
T Consensus 44 ~~~lvDtpGi~~~~~~~~~e~i~~~~~~~~~~d~vl~vvD~~~~~~~l~~~~~l~~-~~~p~ivV~NK~D~~~~~~~~~~ 122 (158)
T cd01879 44 EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLE-LGLPVVVALNMIDEAEKRGIKID 122 (158)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHHHCCCHHH
T ss_conf 79999798741256413567899999985178717999777406776899999986-59988999402776552254667
Q ss_pred --HHHHHHCCCHHHEE--CCCCCCCCC
Q ss_conf --77888478730261--586723210
Q gi|254780711|r 261 --SMRTVTGKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 261 --s~~~~~~~PI~fig--~GE~~~dle 283 (461)
T Consensus 123 ~~~l~~~~~~~ii~iSA~~g~Gi~~L~ 149 (158)
T cd01879 123 LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 999998719948999877897999999