HHsearch alignment for GI: 254780711 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=95.79 E-value=0.042 Score=36.26 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHH-HHH---H------CCC--
Q ss_conf 588699833442---221124689999998513851100031011122-----56888898-876---3------584--
Q gi|254780711|r 183 GYDAVILDTAGR---NHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARN-FDK---I------VDL-- 242 (461)
Q Consensus 183 ~~D~iiiDTaGR---~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~-F~~---~------~~i-- 242 (461)
T Consensus 43 ~~~i~~~DtpGi~~~~~~~~~~~~~~l--~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~ 120 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFL--AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHH--HHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 966999957875457337878999999--874108899999989876554544589999999999997115665554326
Q ss_pred --CCEEEEECCCCCCCCHHH----HHHHHHCCCHHHEEC
Q ss_conf --407764115766330367----778884787302615
Q gi|254780711|r 243 --TGIILTRMDGDGRGGAAL----SMRTVTGKPIKAIGT 275 (461)
Q Consensus 243 --~giIlTKlD~~akgG~al----s~~~~~~~PI~fig~ 275 (461)
T Consensus 121 kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iSA 159 (176)
T cd01881 121 KPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred CCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 971999968603470031599999997468995899977