HHsearch alignment for GI: 254780711 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.62 E-value=0.0035 Score=44.49 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=64.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH-----HHH
Q ss_conf 9962344333468899999999861489507820542210047799998510347422--233210368999-----999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIA-----IRA 175 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~--~~~~~~dp~~i~-----~~a 175 (461)
T Consensus 2 i~iiGHvD~GKSTL~g~lL~~~g~--------i~-----~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~ 68 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGG--------VD-----KRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVG 68 (219)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC--------CC-----HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEE
T ss_conf 899966899899999999998599--------76-----88999999999854998750556613898798589258858
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---------HHHHHHHHHHHHCCCCCE-
Q ss_conf 9999741588699833442221124689999998513851100031011122---------568888988763584407-
Q gi|254780711|r 176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---------DAVHLARNFDKIVDLTGI- 245 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---------~a~~~a~~F~~~~~i~gi- 245 (461)
T Consensus 69 ~~~f~~~~~~~~iiDtPGH~df----~~~mi~--g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~-~~lGik~iI 141 (219)
T cd01883 69 LAKFETEKYRFTILDAPGHRDF----VPNMIT--GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLI 141 (219)
T ss_pred EEEEEECCEEEEEEECCCCHHH----HHHHHH--HHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCCCEEE
T ss_conf 9999849936999878972667----889998--775316689999857675103667776599999999-984997489
Q ss_pred -EEEECCCC
Q ss_conf -76411576
Q gi|254780711|r 246 -ILTRMDGD 253 (461)
Q Consensus 246 -IlTKlD~~ 253 (461)
T Consensus 142 VavNKMD~v 150 (219)
T cd01883 142 VAVNKMDDV 150 (219)
T ss_pred EEEECCCCC
T ss_conf 999875368