HHsearch alignment for GI: 254780711 and conserved domain: cd01883

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.62  E-value=0.0035  Score=44.49  Aligned_cols=131  Identities=18%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHH-----HHH
Q ss_conf             9962344333468899999999861489507820542210047799998510347422--233210368999-----999
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL--EVIPEQSPEKIA-----IRA  175 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~--~~~~~~dp~~i~-----~~a  175 (461)
T Consensus         2 i~iiGHvD~GKSTL~g~lL~~~g~--------i~-----~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~   68 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLLYLLGG--------VD-----KRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVG   68 (219)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCC--------CC-----HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEE
T ss_conf             899966899899999999998599--------76-----88999999999854998750556613898798589258858


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---------HHHHHHHHHHHHCCCCCE-
Q ss_conf             9999741588699833442221124689999998513851100031011122---------568888988763584407-
Q gi|254780711|r  176 TQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---------DAVHLARNFDKIVDLTGI-  245 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---------~a~~~a~~F~~~~~i~gi-  245 (461)
T Consensus        69 ~~~f~~~~~~~~iiDtPGH~df----~~~mi~--g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~-~~lGik~iI  141 (219)
T cd01883          69 LAKFETEKYRFTILDAPGHRDF----VPNMIT--GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLI  141 (219)
T ss_pred             EEEEEECCEEEEEEECCCCHHH----HHHHHH--HHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH-HHCCCCEEE
T ss_conf             9999849936999878972667----889998--775316689999857675103667776599999999-984997489


Q ss_pred             -EEEECCCC
Q ss_conf             -76411576
Q gi|254780711|r  246 -ILTRMDGD  253 (461)
Q Consensus       246 -IlTKlD~~  253 (461)
T Consensus       142 VavNKMD~v  150 (219)
T cd01883         142 VAVNKMDDV  150 (219)
T ss_pred             EEEECCCCC
T ss_conf             999875368