HHsearch alignment for GI: 254780711 and conserved domain: cd01886
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.66 E-value=0.00039 Score=51.78 Aligned_cols=214 Identities=19% Similarity=0.166 Sum_probs=104.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEC-CCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9962344333468899999999861489507820-5422-1004779999851034742223321036899999999997
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMAS-LDVH-RPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~-~Dt~-R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
T Consensus 2 iai~gH~gaGKTtL~EalL~~ag~-i~-r~G~v~~g~tv~D~~~eE~~R------~isi~~~-------------~~~~~ 60 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGR-IH-KIGEVHGGGATMDFMEQERER------GITIQSA-------------ATTCF 60 (270)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC-CC-CCCEECCCCCCCCCCHHHHHC------CCEEECC-------------EEEEE
T ss_conf 899968999988999999986687-35-581553897556684889876------8707336-------------68999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHH--HHCCC-CCEEEEECCC-CCCC
Q ss_conf 415886998334422211246899999985138511000310111225688889887--63584-4077641157-6633
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFD--KIVDL-TGIILTRMDG-DGRG 256 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~--~~~~i-~giIlTKlD~-~akg 256 (461)
T Consensus 61 w~~~~inliDTPG~~----DF~~e~~~aL~~~--D~AviVv~a~~GVe~~T-~~~w~~~~~~~lP~i~fINKmDre~ad~ 133 (270)
T cd01886 61 WKDHRINIIDTPGHV----DFTIEVERSLRVL--DGAVAVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMDRTGADF 133 (270)
T ss_pred ECCEEEEEEECCCCH----HHHHHHHHHHHHH--CEEEEEEECCCCHHHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 899899998696967----8899999998775--55999984676442636-9999889984999899998878778871
Q ss_pred CHHH-HHHHHHCCCHHH----EECCCCC---CCCC-----CCCHHH---HHHHHHCCCCHHHHHHHHHHHHHHH---HHH
Q ss_conf 0367-778884787302----6158672---3210-----013688---9987735862788999874211267---899
Q gi|254780711|r 257 GAAL-SMRTVTGKPIKA----IGTGEKI---NDLE-----NFFPDR---IANRILGMGDVVSLVEKAARNLNEK---QAA 317 (461)
Q Consensus 257 G~al-s~~~~~~~PI~f----ig~GE~~---~dle-----~F~p~~---~~~riLGmgD~~~l~e~~~~~~d~~---~~~ 317 (461)
T Consensus 134 ~~~l~~i~~~lg~~~vp~~~Pig~g~~f~GvvDll~~ka~~y~~~~~~~~~~~~i-P~~~~~~~~~~r~~L~E~vae~Dd 212 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEI-PEDLLEEAEEAREELIETLAEFDD 212 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 6689999998589738898563278974799977878799841789972378137-456689999999988988861489
Q ss_pred HHHHHH-HCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 888653-1046379999999999851148
Q gi|254780711|r 318 LTAKKI-AKGKFDLEDLAEQFRQTQKIGG 345 (461)
Q Consensus 318 ~l~~k~-~~g~F~l~Df~~Ql~~i~kmG~ 345 (461)
T Consensus 213 eLmekyle~~~l~~~el~~~l~~a~~~g~ 241 (270)
T cd01886 213 ELMEKYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999757899999999999999997695