HHsearch alignment for GI: 254780711 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.91 E-value=0.018 Score=39.12 Aligned_cols=139 Identities=24% Similarity=0.271 Sum_probs=66.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89962344333468899999999861489507820542210047799998510347422233210368999999999974
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD 181 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~ 181 (461)
T Consensus 2 ~VaivG~~n~GKSTL~n~L----~~---~~~~~~-----~~~g~T~--------~i~~~~~~~~--------------~~ 47 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKI----RK---TNVAAG-----EAGGITQ--------HIGAFEVPAE--------------VL 47 (168)
T ss_pred EEEEEECCCCCHHHHHHHH----HC---CCCCEE-----ECCCCEE--------EECEEEEEEE--------------EC
T ss_conf 8999948998598999998----58---675045-----1698168--------7153999988--------------25
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH---H--HHHHHHHHHHHCCCCCEEEEECCCC-CC
Q ss_conf 1588699833442221124689999998513851100031011122---5--6888898876358440776411576-63
Q gi|254780711|r 182 GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ---D--AVHLARNFDKIVDLTGIILTRMDGD-GR 255 (461)
Q Consensus 182 ~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq---~--a~~~a~~F~~~~~i~giIlTKlD~~-ak 255 (461)
T Consensus 48 ~~~~i~~iDTPG--h~~---f~~~~~~~~-~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~--~p-~ivviNKiD~~~~~ 118 (168)
T cd01887 48 KIPGITFIDTPG--HEA---FTNMRARGA-SLTDIAILVVAADDGVMPQTIEAIKLAKAAN--VP-FIVALNKIDKPNAN 118 (168)
T ss_pred CCCEEEEEECCC--CHH---HHHHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHHHCC--CC-EEEEEECCCCCCCC
T ss_conf 887189998998--167---799999998-6268899998646675458999999998769--97-89999893089879
Q ss_pred CCHHHHHHHHH----------CCCHHHEE--CCCCCCCCC
Q ss_conf 30367778884----------78730261--586723210
Q gi|254780711|r 256 GGAALSMRTVT----------GKPIKAIG--TGEKINDLE 283 (461)
Q Consensus 256 gG~als~~~~~----------~~PI~fig--~GE~~~dle 283 (461)
T Consensus 119 ~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG~gi~~L~ 158 (168)
T cd01887 119 PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred HHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf 8999999999754524552898759999899998999999