HHsearch alignment for GI: 254780711 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.29 E-value=0.0048 Score=43.44 Aligned_cols=152 Identities=19% Similarity=0.240 Sum_probs=74.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899623443334688999999998614-8950782054221004779999851034742223321036899999999997
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~ 180 (461)
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~---~~E~er------giTI~~~~~-------------~~~ 61 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSN---DLERER------GITILAKNT-------------AVT 61 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC---HHHHHC------CCCEEEEEE-------------EEE
T ss_conf 8999906898799999999997487630465216861475---888872------876334589-------------999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCC-CC
Q ss_conf 41588699833442221124689999998513851100031011122-----5688889887635844077641157-66
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDG-DG 254 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~-~a 254 (461)
T Consensus 62 ~~~~~~n~IDtPGH----~dF~~~~~~~~~~~--D~ailVVdA~~Gv~~QT~~~l~~a~~~~--~~~-iv~iNK~D~~~a 132 (194)
T cd01891 62 YKDTKINIVDTPGH----ADFGGEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALELG--LKP-IVVINKIDRPDA 132 (194)
T ss_pred ECCEEEEEEECCCC----HHHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCCCCC
T ss_conf 89988999989984----77777898776434--4678986537897589999999998729--974-998856458988
Q ss_pred CCCHHHHHHHH-----------HCCCHHHEE--CCCCCCCCCC
Q ss_conf 33036777888-----------478730261--5867232100
Q gi|254780711|r 255 RGGAALSMRTV-----------TGKPIKAIG--TGEKINDLEN 284 (461)
Q Consensus 255 kgG~als~~~~-----------~~~PI~fig--~GE~~~dle~ 284 (461)
T Consensus 133 ~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA~~G~~~d~~~~ 175 (194)
T cd01891 133 RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 8999999999999863999333588578725655335778865