HHsearch alignment for GI: 254780711 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.29  E-value=0.0048  Score=43.44  Aligned_cols=152  Identities=19%  Similarity=0.240  Sum_probs=74.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             899623443334688999999998614-8950782054221004779999851034742223321036899999999997
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~  180 (461)
T Consensus         4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~---~~E~er------giTI~~~~~-------------~~~   61 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSN---DLERER------GITILAKNT-------------AVT   61 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCC---HHHHHC------CCCEEEEEE-------------EEE
T ss_conf             8999906898799999999997487630465216861475---888872------876334589-------------999


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCH-----HHHHHHHHHHHHCCCCCEEEEECCC-CC
Q ss_conf             41588699833442221124689999998513851100031011122-----5688889887635844077641157-66
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQ-----DAVHLARNFDKIVDLTGIILTRMDG-DG  254 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq-----~a~~~a~~F~~~~~i~giIlTKlD~-~a  254 (461)
T Consensus        62 ~~~~~~n~IDtPGH----~dF~~~~~~~~~~~--D~ailVVdA~~Gv~~QT~~~l~~a~~~~--~~~-iv~iNK~D~~~a  132 (194)
T cd01891          62 YKDTKINIVDTPGH----ADFGGEVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALELG--LKP-IVVINKIDRPDA  132 (194)
T ss_pred             ECCEEEEEEECCCC----HHHHHHHHHHHHHC--CEEEEEEECCCCCCHHHHHHHHHHHHCC--CCE-EEEEECCCCCCC
T ss_conf             89988999989984----77777898776434--4678986537897589999999998729--974-998856458988


Q ss_pred             CCCHHHHHHHH-----------HCCCHHHEE--CCCCCCCCCC
Q ss_conf             33036777888-----------478730261--5867232100
Q gi|254780711|r  255 RGGAALSMRTV-----------TGKPIKAIG--TGEKINDLEN  284 (461)
Q Consensus       255 kgG~als~~~~-----------~~~PI~fig--~GE~~~dle~  284 (461)
T Consensus       133 ~~~~v~~ei~~~~~~~~~~~~~~~~pii~~SA~~G~~~d~~~~  175 (194)
T cd01891         133 RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED  175 (194)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             8999999999999863999333588578725655335778865